BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027083
(228 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359472534|ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Vitis vinifera]
gi|297738080|emb|CBI27281.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/229 (82%), Positives = 213/229 (93%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQRAF TL+EFETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+VYFQLEN
Sbjct: 388 LGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLEN 447
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSRA+PPYKSVAA+NCVILGCANIWDLDRAYQTFEA+GSSFGLTPDIHSYNAL+YAFGKL
Sbjct: 448 LSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKL 507
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEASRVFEHL SLG+KPNAMS+SLLVDAHL NRDQKAALSVI+EM+NAGFAPSKE L
Sbjct: 508 KKTFEASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEIL 567
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KKVRRRC+REMD ESND+VE+LA+KF IRM TENR+++LFNL Y+ YA
Sbjct: 568 KKVRRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA 616
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
+ + P+ S+N ++ A + ++T A ++F+ ++ G + P+ SY L+V
Sbjct: 174 YAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTGKESMPDDESYELVVGMLFLTDQI 233
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE--MDE--------ESNDRVEALAKKF-- 205
AAL +D + +G+ S + R CV + +D ++ D+ +AL+ +
Sbjct: 234 DAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKALSPSWNM 293
Query: 206 -----DIRMNTENRKNILFNLEYSASY 227
DI M +N K + LE+ A +
Sbjct: 294 CIFIADIAMQEDNSKLAFYALEFMARW 320
>gi|255542052|ref|XP_002512090.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549270|gb|EEF50759.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/229 (76%), Positives = 204/229 (89%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQ+AF TL E+E+AY S + EE +FSPFTSL PLVVACS+KGFETLD+VYFQLEN
Sbjct: 390 LGNLQKAFTTLREYESAYDSSEKEAEEELFSPFTSLNPLVVACSKKGFETLDTVYFQLEN 449
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSRAE PYKSVAA+NC+ILGCANIWD+DRAYQTFEA+GSSF LTP+IHSYNALIYAFG+L
Sbjct: 450 LSRAERPYKSVAALNCIILGCANIWDIDRAYQTFEAIGSSFELTPNIHSYNALIYAFGRL 509
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+RVFEHLVSLG+KPNA +Y LLVDAHL NRD K ALSVI+EM++AGF PSKETL
Sbjct: 510 KKTFEAARVFEHLVSLGIKPNATTYLLLVDAHLINRDVKTALSVIEEMMSAGFTPSKETL 569
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KKVRRRCVREMD +S+DRV ++AK IRM TENR+++LFNLEYS YA
Sbjct: 570 KKVRRRCVREMDYDSDDRVGSVAKNCKIRMGTENRRDMLFNLEYSTDYA 618
>gi|449452857|ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Cucumis sativus]
gi|449489211|ref|XP_004158247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/228 (75%), Positives = 200/228 (87%), Gaps = 1/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSII-DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQRAF TL EFE AY +S E++FSPFTSL+PLVVACS+KGFETLD VYFQLEN
Sbjct: 389 LGNLQRAFSTLREFEEAYRNSDDGSCEDMFSPFTSLHPLVVACSKKGFETLDLVYFQLEN 448
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSRA+PPYKSVAA+NCVILGCANIWDLDRAYQTFEA+GSSFGLTP+IHSYNAL+YAFG+L
Sbjct: 449 LSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPNIHSYNALMYAFGRL 508
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+RVFEHLV LG+KPNA SYSLL DAHL NRD K+AL+ ID MV AGFAPSKE L
Sbjct: 509 KKTFEAARVFEHLVGLGIKPNATSYSLLADAHLINRDPKSALAAIDNMVTAGFAPSKELL 568
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KKVRRRC+RE D +SND+V LA+ F IRM +E+R++ILFNL Y ++Y
Sbjct: 569 KKVRRRCIREQDYDSNDKVGNLAQNFKIRMGSESRRDILFNLNYGSNY 616
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
+ ++P+ S+N ++ A + ++T A ++ E ++ G + P+ SY L++ L+
Sbjct: 175 YAISPNTASFNLVLKAMYQARETEAAEKLLERMLQTGEESMPDDESYDLVIRMLLSTYQI 234
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
AAL ID G S + + R CVR+
Sbjct: 235 DAALKYIDLTSKPGHMLSLKAFSECVRSCVRK 266
>gi|356494977|ref|XP_003516357.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Glycine max]
Length = 616
Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 170/228 (74%), Positives = 201/228 (88%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G+LQ+AF TLNE+E+AYGDS + E++F PFTSL+PLVVACS+KGFETLD+VYFQLENL
Sbjct: 389 LGNLQKAFGTLNEYESAYGDSGQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENL 448
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+RAEPPYKSVAA+NCVILGCANIWDLDRAYQTFE++GS+FGL PDIHSYN LIYAFGKLK
Sbjct: 449 NRAEPPYKSVAALNCVILGCANIWDLDRAYQTFESIGSTFGLIPDIHSYNGLIYAFGKLK 508
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
KT EA+RVFEHLVSLG+K NA SYSLLVDAHL NRD K+AL+VID+M AG+ PSKE LK
Sbjct: 509 KTHEATRVFEHLVSLGLKSNAKSYSLLVDAHLINRDVKSALAVIDDMRAAGYEPSKEMLK 568
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KVRRRC REMD ES+ RV++LA + ++ +ENR++ILFNL YS YA
Sbjct: 569 KVRRRCTREMDNESDARVQSLANSLNYQLGSENRRDILFNLNYSMGYA 616
>gi|356499885|ref|XP_003518766.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Glycine max]
Length = 615
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 168/225 (74%), Positives = 200/225 (88%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G+LQ+AF TLNE+E AYGDS + E++F PFTSL+PLVVACS+KGFETLD+VYFQLENL
Sbjct: 387 LGNLQKAFGTLNEYEAAYGDSGQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENL 446
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+RAEPPYKSVAA+NCVILGCANIWDLDRAYQTFE++GS+FGL PDIHSYN L+YAFGKLK
Sbjct: 447 NRAEPPYKSVAALNCVILGCANIWDLDRAYQTFESIGSTFGLIPDIHSYNGLMYAFGKLK 506
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
KT EA+RVFEHLVSLG+KPNA SYSLLVDAHL NRD K+AL+VID+M AG+ PSKE LK
Sbjct: 507 KTHEATRVFEHLVSLGLKPNAKSYSLLVDAHLINRDVKSALAVIDDMRAAGYEPSKEVLK 566
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225
KVRRRC+REMD ES+ RV++L + R+ +ENR++ILFNL YS+
Sbjct: 567 KVRRRCMREMDNESDARVQSLVNSLNYRLGSENRRDILFNLNYSS 611
>gi|224108888|ref|XP_002315005.1| predicted protein [Populus trichocarpa]
gi|222864045|gb|EEF01176.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/229 (75%), Positives = 202/229 (88%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G LQ+AF TL E E+ YG S + EE +FSPF+SL PLV+ACS+KGFETLDSVYFQLEN
Sbjct: 380 LGSLQKAFATLRELESCYGSSDKEAEEELFSPFSSLNPLVLACSKKGFETLDSVYFQLEN 439
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSRAE PYKSVAA+NC+ILGCANIWDLDRAYQTFEA+ SSFGLTP+IHSYNALI+AFG+L
Sbjct: 440 LSRAESPYKSVAALNCIILGCANIWDLDRAYQTFEAISSSFGLTPNIHSYNALIFAFGRL 499
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEAS VFEHLVSLGVKPNAMSYSLLVDAHL NRD KAA+ VI++M +AGF PSKE L
Sbjct: 500 KKTFEASNVFEHLVSLGVKPNAMSYSLLVDAHLINRDTKAAVLVIEKMDSAGFVPSKEIL 559
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KKV+RRC+REM+ ES+DRVE A+KFD R+ ++NR+++LFNLEYS +A
Sbjct: 560 KKVKRRCIREMEYESDDRVEFWARKFDYRLGSQNRRDLLFNLEYSTDFA 608
>gi|297851044|ref|XP_002893403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339245|gb|EFH69662.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 204/229 (89%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQ+AF +L+E ETAY DS ++ EE+ SPFTSLYPLVVACS+KGFETLD VYFQLE+
Sbjct: 399 LGNLQKAFTSLHELETAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLES 458
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSR + PYKSVAA+NC+ILGCAN WDLDRAYQTFEA+ +SFGLTP+I SYNAL+YAFGK+
Sbjct: 459 LSRGDTPYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKV 518
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+ VFEHLVS+GVKP++ +YSLLVDAHL NRD K+AL+V+D+M+ AGF PS+ETL
Sbjct: 519 KKTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETL 578
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KK+RRRCVREMD E++D+VEALAKKF IRM TENR+N+LFN++YS A
Sbjct: 579 KKLRRRCVREMDYENDDQVEALAKKFQIRMGTENRRNMLFNIDYSRGRA 627
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
F + P+ SYN ++ A + ++T A ++ E ++ LG + P+ SY L++ H
Sbjct: 185 FSVAPNTASYNLVLKAMYQARETDAAMKLLERMLLLGKESPPDDESYDLVIGMHFGVGKN 244
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
A+ V+D + +G+ S + R CV
Sbjct: 245 DEAMKVMDTALKSGYMLSTTVFTECVRSCV 274
>gi|21537068|gb|AAM61409.1| unknown [Arabidopsis thaliana]
Length = 630
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 164/229 (71%), Positives = 205/229 (89%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQ+AF +L+E E+AY DS ++ EE+ SPFTSLYPLVVACS+KGFETLD VYFQLE+
Sbjct: 399 LGNLQKAFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLES 458
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LS+ + PYKSVAA+NC+ILGCAN WDLDRAYQTFEA+ +SFGLTP+I SYNAL+YAFGK+
Sbjct: 459 LSQGDTPYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKV 518
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+ VFEHLVS+GVKP++ +YSLLVDAHL NRD K+AL+V+D+M+ AGF PS+ETL
Sbjct: 519 KKTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETL 578
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KK+RRRCVREMD+E++D+VEALAKKF IRM +ENR+N+LFN++YS A
Sbjct: 579 KKLRRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYSRGRA 627
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
F + P+ SYN ++ A + ++T A ++ E ++ LG P+ SY L++ H
Sbjct: 185 FSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLGKDSLPDDESYDLVIGMHFGVGKN 244
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
A+ V+D + +G+ S + R CV
Sbjct: 245 DEAMKVMDTALKSGYMLSTSVFTECVRSCV 274
>gi|18395911|ref|NP_564247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173405|sp|Q9FZD1.1|PPR58_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g26460, mitochondrial; Flags: Precursor
gi|9797754|gb|AAF98572.1|AC013427_15 Contains similarity to a hypothetical protein F21B7.16 gi|7485908
from Arabidopsis thaliana BAC F21B7 gb|AC002560 and
contains multiple PPR PF|01535 repeats and a domain of
unknown function PF|00668. ESTs gb|T45755, gb|AI993167,
gb|AV554476, gb|T46823, gb|T41981, gb|AV546597,
gb|AI099868 come from this gene [Arabidopsis thaliana]
gi|19698979|gb|AAL91225.1| unknown protein [Arabidopsis thaliana]
gi|22136300|gb|AAM91228.1| unknown protein [Arabidopsis thaliana]
gi|332192573|gb|AEE30694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 164/229 (71%), Positives = 205/229 (89%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQ+AF +L+E E+AY DS ++ EE+ SPFTSLYPLVVACS+KGFETLD VYFQLE+
Sbjct: 399 LGNLQKAFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLES 458
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LS+ + PYKSVAA+NC+ILGCAN WDLDRAYQTFEA+ +SFGLTP+I SYNAL+YAFGK+
Sbjct: 459 LSQGDTPYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKV 518
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+ VFEHLVS+GVKP++ +YSLLVDAHL NRD K+AL+V+D+M+ AGF PS+ETL
Sbjct: 519 KKTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETL 578
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KK+RRRCVREMD+E++D+VEALAKKF IRM +ENR+N+LFN++YS A
Sbjct: 579 KKLRRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYSRGRA 627
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
F + P+ SYN ++ A + ++T A ++ E ++ LG P+ SY L++ H
Sbjct: 185 FSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLGKDSLPDDESYDLVIGMHFGVGKN 244
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
A+ V+D + +G+ S + R CV
Sbjct: 245 DEAMKVMDTALKSGYMLSTSVFTECVRSCV 274
>gi|357122103|ref|XP_003562755.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 191/228 (83%), Gaps = 2/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSI-IDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G LQRAF TL EFE AYG+S ID+E +FSPF SL PLVVAC + GF TLDSVY QLEN
Sbjct: 392 IGQLQRAFGTLREFENAYGNSENIDIE-LFSPFMSLQPLVVACCKDGFTTLDSVYVQLEN 450
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LS A+PPYKSVAA+NCVI+GCANIWDL+RAY+TFEA+ FGLTPDIHSYNAL+YAFGKL
Sbjct: 451 LSSADPPYKSVAALNCVIVGCANIWDLERAYETFEALKEKFGLTPDIHSYNALLYAFGKL 510
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKT EA VF+HLVSL VKPN+ +YSLLVDAHL NRD KAAL+VIDEMV+ GF PSKETL
Sbjct: 511 KKTEEACNVFQHLVSLDVKPNSTTYSLLVDAHLVNRDPKAALAVIDEMVDVGFTPSKETL 570
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KKVRRRC RE D +S++++++L K+ + RM E R+ +L+N+EYSA Y
Sbjct: 571 KKVRRRCSRESDFDSDEKLQSLCKQLNCRMGGEGRRELLYNIEYSAEY 618
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F ++P+ S+N ++ + + ++ A ++ E ++ G P+ SY+L+VD + +
Sbjct: 180 FEISPNTASHNLILKSMVRAREVEGAEKLVERMLLTGTVPDDESYNLVVDLLIKQNRVDS 239
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
AL +D M+ +G+ S R C+R
Sbjct: 240 ALKYLDLMLKSGYMISSTVFADCVRECIR 268
>gi|115473175|ref|NP_001060186.1| Os07g0599000 [Oryza sativa Japonica Group]
gi|33354185|dbj|BAC81166.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|113611722|dbj|BAF22100.1| Os07g0599000 [Oryza sativa Japonica Group]
Length = 623
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/227 (70%), Positives = 187/227 (82%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G LQRAF TL EFE YG+ E+FSPFTSL PLVVAC + G+ TLDSVY QLENL
Sbjct: 390 IGHLQRAFGTLREFENTYGNFEDIDSELFSPFTSLRPLVVACCKDGYTTLDSVYVQLENL 449
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S A+ PYKSVAA+NCVILGCANIWDL+RAY+TFEA+ FGLTPDIHSYNAL++AFGK K
Sbjct: 450 SSADSPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRK 509
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
KT EA VF+HLVSLGVKPNA +Y LLVD HL NRD KAAL+VI EMV+AGF PSKETLK
Sbjct: 510 KTEEACNVFQHLVSLGVKPNATTYGLLVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLK 569
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KVRRRC RE D +S+++V++LAK+F+ RM ENR+ +LFN+EYSA +
Sbjct: 570 KVRRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLFNIEYSAEF 616
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G I LD A Q E F +TP+ S+N ++ + + ++ A ++ E ++ G +
Sbjct: 162 GALPIEMLDLAEQMRE-----FEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQ 216
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
P+ SY+L+V+ + + L +D M+ +G+ S + R CVR
Sbjct: 217 PDDESYNLVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVR 266
>gi|125600969|gb|EAZ40545.1| hypothetical protein OsJ_25000 [Oryza sativa Japonica Group]
Length = 629
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/227 (70%), Positives = 187/227 (82%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G LQRAF TL EFE YG+ E+FSPFTSL PLVVAC + G+ TLDSVY QLENL
Sbjct: 390 IGHLQRAFGTLREFENTYGNFEDIDSELFSPFTSLRPLVVACCKDGYTTLDSVYVQLENL 449
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S A+ PYKSVAA+NCVILGCANIWDL+RAY+TFEA+ FGLTPDIHSYNAL++AFGK K
Sbjct: 450 SSADSPYKSVAALNCVILGCANIWDLERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRK 509
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
KT EA VF+HLVSLGVKPNA +Y LLVD HL NRD KAAL+VI EMV+AGF PSKETLK
Sbjct: 510 KTEEACNVFQHLVSLGVKPNATTYGLLVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLK 569
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KVRRRC RE D +S+++V++LAK+F+ RM ENR+ +LFN+EYSA +
Sbjct: 570 KVRRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLFNIEYSAEF 616
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q E F +TP+ S+N ++ + + ++ A ++ E ++ G +P+ SY+
Sbjct: 169 LDLAEQMRE-----FEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYN 223
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
L+V+ + + L +D M+ +G+ S + R CVR
Sbjct: 224 LVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVR 266
>gi|343172132|gb|AEL98770.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 594
Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 152/224 (67%), Positives = 190/224 (84%), Gaps = 3/224 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G+L AF TL+EFE + + E++FSPFTSL+PLV+ACS+KG+ETLD VY+QLENL
Sbjct: 374 VGNLPSAFSTLSEFEKKHATA---EEDVFSPFTSLHPLVMACSKKGYETLDLVYYQLENL 430
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SRA+PPYKSVAA+NCV+LGCAN WDLDRAYQTFEA+ S FGLTP+IHSYNAL+YAFGKL+
Sbjct: 431 SRADPPYKSVAALNCVVLGCANTWDLDRAYQTFEAISSGFGLTPNIHSYNALMYAFGKLR 490
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
K EA+RVFEHL SLG+KPNAMSY+LLVDAHL NRD K+ALSV++ M+ AGF P++ TL
Sbjct: 491 KAEEAARVFEHLSSLGMKPNAMSYTLLVDAHLVNRDPKSALSVLEAMIEAGFEPTRATLL 550
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224
K RRRC REMD ES++ VE++A+K I + ENR+++LFN+EYS
Sbjct: 551 KARRRCQREMDHESDNLVESIARKCKIYLGAENRRHLLFNMEYS 594
>gi|343172130|gb|AEL98769.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 594
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/224 (67%), Positives = 190/224 (84%), Gaps = 3/224 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G+L AF TL+EFE + + E++FSPFTSL+PLV+ACS+KG+ETLD VY+QLENL
Sbjct: 374 VGNLPSAFSTLSEFEKKHATA---EEDVFSPFTSLHPLVMACSKKGYETLDLVYYQLENL 430
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SRA+PPYKSVAA+NCV+LGCAN WDLDRAYQTFEA+ S FGLTP+IHSYNAL+YAFGKL+
Sbjct: 431 SRADPPYKSVAALNCVVLGCANSWDLDRAYQTFEAISSGFGLTPNIHSYNALMYAFGKLR 490
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
K EA+RVFEHL SLG+KPNAMSY+LLVDAHL NRD K+ALSV++ M+ AGF P++ TL
Sbjct: 491 KAEEAARVFEHLSSLGMKPNAMSYTLLVDAHLVNRDPKSALSVLEAMIEAGFEPARATLL 550
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224
K RRRC REMD ES++ VE++A+K I + ENR+++LFN+EYS
Sbjct: 551 KARRRCQREMDHESDNLVESIARKCKIYLGAENRRHLLFNMEYS 594
>gi|326527695|dbj|BAK08122.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 622
Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 159/228 (69%), Positives = 189/228 (82%), Gaps = 1/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G LQRAF TL EFE AY + +E+FSPFTSL PLVVAC + GF TLDSVY QLENL
Sbjct: 395 IGQLQRAFGTLREFENAYRNFEGIDKELFSPFTSLQPLVVACCKDGFTTLDSVYVQLENL 454
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S A+PPYKSVAA+NCVILGCANIWDL+RAY+TFEA+ FGLTPDIHSYNAL++AFGKLK
Sbjct: 455 STADPPYKSVAALNCVILGCANIWDLERAYETFEAMKEKFGLTPDIHSYNALLHAFGKLK 514
Query: 121 KTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KT EAS VF+HLVSL VKPNA +YSLLVDAHL NRD KAAL+V+DEMV+ GF PSKETL
Sbjct: 515 KTEEASNVFQHLVSLDDVKPNATTYSLLVDAHLVNRDPKAALAVLDEMVDVGFTPSKETL 574
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KKVRRRC RE D S++++++L K+ ++RM E R+ +L+N+EYSA Y
Sbjct: 575 KKVRRRCSRESDFGSDEKLQSLCKRLNLRMGGEGRREMLYNIEYSAEY 622
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F + P+ SYN ++ K ++ A ++ E ++ G+ P+ SY+L+VD L + +
Sbjct: 183 FHIVPNTASYNLVLKTMVKAREVQGAEKLVERMLQTGIVPDDESYNLVVDLLLKHNRADS 242
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
A ++ M+ +G+A S + R CV+ + R++ LA + TE K
Sbjct: 243 AFKYLELMLKSGYAVSSPVFAEYVRVCVK------SGRLDTLASIIEKCKATEKNK 292
>gi|242046198|ref|XP_002460970.1| hypothetical protein SORBIDRAFT_02g038410 [Sorghum bicolor]
gi|241924347|gb|EER97491.1| hypothetical protein SORBIDRAFT_02g038410 [Sorghum bicolor]
Length = 616
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/228 (67%), Positives = 195/228 (85%), Gaps = 2/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDS-IIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G LQRAF TL EFE AYG+S ID+E +FSPFTSL+PLVVAC + GF TLDSVY QLEN
Sbjct: 390 IGQLQRAFGTLREFENAYGNSEDIDLE-LFSPFTSLHPLVVACCKDGFTTLDSVYVQLEN 448
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSRA+PPYKSV+A+NCVILGCANIWD++RAY+TF A+ F LTPDIHSYNAL+ AFGKL
Sbjct: 449 LSRADPPYKSVSALNCVILGCANIWDINRAYETFVAIKEKFELTPDIHSYNALLCAFGKL 508
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K+T EA VF+H+++LGVKPN+ +YSLLVDAHL N+D KAAL++IDEMV+AGF PSK+TL
Sbjct: 509 KQTGEACNVFQHVLTLGVKPNSTTYSLLVDAHLANKDPKAALAIIDEMVDAGFTPSKDTL 568
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
+KVRRRC RE D +S+++V++LAK+F+ R+ ENR+ +L+++EY+ Y
Sbjct: 569 RKVRRRCSRESDFDSDEKVQSLAKQFNYRLGGENRREMLYSIEYNPVY 616
>gi|326494056|dbj|BAJ85490.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 622
Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/228 (69%), Positives = 188/228 (82%), Gaps = 1/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G LQRAF TL EFE AY + +E+FSPFTSL PLVVAC + GF TLDSVY QLENL
Sbjct: 395 IGQLQRAFGTLREFENAYRNFEGIDKELFSPFTSLQPLVVACRKDGFTTLDSVYVQLENL 454
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S A+PPYKSVAA+NCVILGCANIWDL+RAY+TFEA+ FGLTPDIHSYNAL++AFGKLK
Sbjct: 455 STADPPYKSVAALNCVILGCANIWDLERAYETFEAMKEKFGLTPDIHSYNALLHAFGKLK 514
Query: 121 KTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KT EAS VF+HLVSL VKPNA +YSLLVDAHL NRD KAAL+V+DEMV+ GF PSKETL
Sbjct: 515 KTEEASNVFQHLVSLDDVKPNATTYSLLVDAHLVNRDPKAALAVLDEMVDVGFTPSKETL 574
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
KKVRRRC RE D S++++++L K+ ++RM E R+ + +N+EYSA Y
Sbjct: 575 KKVRRRCSRESDFGSDEKLQSLCKRLNLRMGGEGRREMPYNIEYSAEY 622
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F + P+ SYN ++ K ++ A ++ E ++ G+ P+ SY+L+VD L + +
Sbjct: 183 FHIVPNTASYNLVLKTMVKAREVQGAEKLVERMLQTGIVPDDESYNLVVDLLLKHNRADS 242
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
A ++ M+ +G+A S + R CV+ + R++ LA + TE K
Sbjct: 243 AFKYLELMLKSGYAVSSPVFAEYVRVCVK------SGRLDTLASIIEKCKATEKNK 292
>gi|414590760|tpg|DAA41331.1| TPA: hypothetical protein ZEAMMB73_952868 [Zea mays]
gi|414590761|tpg|DAA41332.1| TPA: hypothetical protein ZEAMMB73_952868 [Zea mays]
Length = 407
Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/228 (66%), Positives = 193/228 (84%), Gaps = 2/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDS-IIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G LQRAF TL EFE AYG+S ID+E +FSPFTSL+PLVVAC + GF TLDSVY QLEN
Sbjct: 181 IGQLQRAFGTLREFENAYGNSEDIDLE-LFSPFTSLHPLVVACCKDGFSTLDSVYGQLEN 239
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L A+PPYKS+AA+NCV+LGCANIWD++RAY+TF A+ F LTPDIHSYNAL+ AFGKL
Sbjct: 240 LIHADPPYKSLAALNCVVLGCANIWDINRAYETFVAIKEKFDLTPDIHSYNALLCAFGKL 299
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K+T EA VF+H+++LGVKPNA +YSLLVDAHL N+D KAAL++IDEMV+AGF PSK+TL
Sbjct: 300 KQTGEACNVFQHVLTLGVKPNATTYSLLVDAHLANKDPKAALAIIDEMVDAGFTPSKDTL 359
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
+KVRRRC RE D +S+++V++LAK+F+ RM ENR+ +L+++EY+ Y
Sbjct: 360 RKVRRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLYSIEYNPVY 407
>gi|414887458|tpg|DAA63472.1| TPA: hypothetical protein ZEAMMB73_429774 [Zea mays]
Length = 618
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 151/228 (66%), Positives = 193/228 (84%), Gaps = 2/228 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSI-IDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G LQRAF TL+EFE AYG+S +D+E +FSPFTSL+PLVVAC + GF TLD VY QLEN
Sbjct: 392 IGQLQRAFGTLHEFENAYGNSKDVDLE-LFSPFTSLHPLVVACCKDGFSTLDLVYVQLEN 450
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LS A+PPYKSVAA+NCVILGCANIWD++RAY+TF A+ F L+PDIHSYNAL+ AFGKL
Sbjct: 451 LSHADPPYKSVAALNCVILGCANIWDINRAYETFVAIKEKFELSPDIHSYNALLCAFGKL 510
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K+T EA VF+H+++LGVKPNA +YS LVDAHL N+D KAAL++IDEMV+AGF PSK+TL
Sbjct: 511 KQTGEACNVFQHVLTLGVKPNATTYSRLVDAHLANKDPKAALAIIDEMVDAGFTPSKDTL 570
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
+KVRRRC RE D +S+++V++LAK+F+ RM ENR+ +L+++EY+ Y
Sbjct: 571 RKVRRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLYSIEYNPVY 618
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F L P+ SYN ++ + K+++ A ++ E ++ G P+ SY+L+V + +
Sbjct: 180 FELEPNSASYNLVLKSMVADKESYGAEKLIERMLQTGTVPDEESYNLVVGLLIRQNLVDS 239
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDE--------ESNDRVEALAKKF---- 205
+L +D M+ +G+ PS + CVR +D ++ D+++ L ++
Sbjct: 240 SLKYLDLMLKSGYTPSLTVFTDYIQACVRSGRLDTLTSIIQKCKTADKIKVLCPQWAWCI 299
Query: 206 DIR---MNTENRKNILFNLEYSASY 227
DI N K LF LE+ A +
Sbjct: 300 DISEAAFEANNSKLALFALEFLARW 324
>gi|357487545|ref|XP_003614060.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515395|gb|AES97018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 611
Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 144/224 (64%), Positives = 189/224 (84%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G+LQ+AF TL+++E+AYG+S + +++F PFTSL+PL VACS+KGFETLD+VYFQLENL
Sbjct: 377 LGNLQKAFGTLHDYESAYGNSDQEADDLFCPFTSLHPLSVACSKKGFETLDTVYFQLENL 436
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S AE PYKSVAA+NCVI+G ANIWDLDRAYQTFE++ S+FGLT +IHSYN L+YAFGK+
Sbjct: 437 SHAERPYKSVAALNCVIVGSANIWDLDRAYQTFESIASTFGLTHNIHSYNGLMYAFGKVN 496
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
K E S+VF ++V+ G+KPNA SY LL+DAHL NRD K+A+ V+D+M+ AGF P K TLK
Sbjct: 497 KADEVSKVFGYIVNSGLKPNAKSYCLLIDAHLINRDVKSAMGVLDDMIAAGFEPMKGTLK 556
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224
K+RRRC+RE D ES++R+E+LA ++ RM +E R+N+LFNL YS
Sbjct: 557 KIRRRCIREFDTESDERLESLALSYNYRMGSEGRRNMLFNLNYS 600
>gi|125559060|gb|EAZ04596.1| hypothetical protein OsI_26746 [Oryza sativa Indica Group]
Length = 945
Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 145/202 (71%), Positives = 173/202 (85%)
Query: 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
++FSPFTSL PLVVAC + G+ TLDSVY QLENLS A+ PYKSVAA+NCVILGCANIWDL
Sbjct: 732 QLFSPFTSLRPLVVACCKDGYTTLDSVYVQLENLSSADSPYKSVAALNCVILGCANIWDL 791
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+RAY+TFEA+ FGLTPDIHSYNAL++AFGK KKT EA VF+HLVSLGVKPNA +Y L
Sbjct: 792 ERAYETFEAIKEKFGLTPDIHSYNALLHAFGKRKKTEEACNVFQHLVSLGVKPNATTYGL 851
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
LVD HL NRD KAAL+VI EMV+AGF PSKETLKKV+RRC RE D +S+++V++LAK+F+
Sbjct: 852 LVDTHLVNRDAKAALAVIAEMVDAGFTPSKETLKKVQRRCSRESDFDSDEKVQSLAKQFN 911
Query: 207 IRMNTENRKNILFNLEYSASYA 228
RM ENR+ +LFN+EYSA +A
Sbjct: 912 YRMGGENRREMLFNIEYSAEFA 933
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q E F +TP+ S+N ++ + + ++ A ++ E ++ G +P+ SY+
Sbjct: 535 LDLAEQMRE-----FEITPNTASHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYN 589
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
L+V+ + + L +D M+ +G+ S + R CVR
Sbjct: 590 LVVNLLIKLNRVDSTLKYLDLMLKSGYTISSSVFVEYVRACVR 632
>gi|414887460|tpg|DAA63474.1| TPA: hypothetical protein ZEAMMB73_429774 [Zea mays]
Length = 179
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 150/175 (85%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
VY QLENLS A+PPYKSVAA+NCVILGCANIWD++RAY+TF A+ F L+PDIHSYNAL
Sbjct: 5 VYVQLENLSHADPPYKSVAALNCVILGCANIWDINRAYETFVAIKEKFELSPDIHSYNAL 64
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ AFGKLK+T EA VF+H+++LGVKPNA +YS LVDAHL N+D KAAL++IDEMV+AGF
Sbjct: 65 LCAFGKLKQTGEACNVFQHVLTLGVKPNATTYSRLVDAHLANKDPKAALAIIDEMVDAGF 124
Query: 173 APSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
PSK+TL+KVRRRC RE D +S+++V++LAK+F+ RM ENR+ +L+++EY+ Y
Sbjct: 125 TPSKDTLRKVRRRCSRESDFDSDEKVQSLAKQFNYRMGGENRREMLYSIEYNPVY 179
>gi|168007109|ref|XP_001756251.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692761|gb|EDQ79117.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 141/215 (65%), Gaps = 4/215 (1%)
Query: 7 AFITLNEFETAYGDSIIDME-EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
AF+ L+E ++ +G + E EI SPF+SL PLV++ S+ G LD YF+L + +
Sbjct: 268 AFLILSEMQSLFGAAQNAEELEILSPFSSLRPLVLSLSQLGPAGLDGAYFKLAEMHASGQ 327
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +AAINCVILGCANIWD DRAYQTFE++ S+FGL PD HS NAL+ AFGK KKT EA
Sbjct: 328 PVP-IAAINCVILGCANIWDADRAYQTFESISSTFGLRPDSHSINALLEAFGKNKKTAEA 386
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
++FE++ G+ P+ S+ L++ H+ NRD ++A +++ M++AG P +E L K+ RR
Sbjct: 387 VKLFEYMKESGIAPDQRSFELMITVHVINRDVESASAILTTMMDAGHTPCREVLYKLWRR 446
Query: 186 CVREMDEESNDRVEALAKKFDIR--MNTENRKNIL 218
RE D ++ + + L K + R ENR+ ++
Sbjct: 447 SRREGDTKTAEYLRGLFKSWGYRDCHVGENRRRLI 481
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEA-SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+P+I YN L++A +L + R+ + S GV P +SY+ L+ + RD KAA
Sbjct: 23 SPNILVYNLLLHAKLRLGAHPDVLHRIVSEMESGGVMPTQLSYNFLLRSVFRQRDSKAAE 82
Query: 162 SVIDEMVNAG 171
++++M AG
Sbjct: 83 LILEKMERAG 92
>gi|384253014|gb|EIE26489.1| hypothetical protein COCSUDRAFT_64515 [Coccomyxa subellipsoidea
C-169]
Length = 589
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 33 TSLYPLVVACSRKGFETLDSVYFQLENLS-RAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
T+L LV A + + E D+ Y++LE++ + EP S ++CV+ C+ + DL RA++
Sbjct: 370 TALATLVNAAA-ESPEAADAAYYELEDMHVKGEP--VSGPMLDCVVAACSQMGDLGRAFE 426
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
TFEA G+ G+ PD +YNA++ T ++ E + + GV NA+++SL V+ H
Sbjct: 427 TFEAYGA-LGMKPDAQAYNAVLMGCIHHGMTASVPKILEEMEASGVAFNALTWSLHVEYH 485
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ +AA +V ++AGF +L+ + RC E N + AL + F T
Sbjct: 486 VVQGGARAAAAVQQAALDAGFQIRPSSLEMLIARC------ERNGEI-ALLEHFASMQRT 538
Query: 212 ENRKNILFNL 221
+ K+ +L
Sbjct: 539 KGTKDTYMDL 548
>gi|297744268|emb|CBI37238.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSV 53
+G+LQRAF TL+EFETAY +S + EE IFSPFTSL+PLV+A SRKGFETLD+V
Sbjct: 137 LGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSRKGFETLDTV 190
>gi|147766832|emb|CAN63146.1| hypothetical protein VITISV_029486 [Vitis vinifera]
Length = 353
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+GDLQRAF TL++FETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+ L
Sbjct: 189 LGDLQRAFSTLHKFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTCTRPLHQ 248
Query: 60 LSRA 63
+ +A
Sbjct: 249 VYKA 252
>gi|297740892|emb|CBI31074.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSV 53
+GDLQRAF TL++FETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+V
Sbjct: 228 LGDLQRAFSTLHKFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTV 281
>gi|147790297|emb|CAN69976.1| hypothetical protein VITISV_011278 [Vitis vinifera]
Length = 329
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVYF 55
+GDLQRAF TL++FETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+ Y
Sbjct: 189 LGDLQRAFSTLHKFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTPYL 244
>gi|147845402|emb|CAN83360.1| hypothetical protein VITISV_015661 [Vitis vinifera]
Length = 241
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 47/55 (85%), Gaps = 1/55 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDSVY 54
+G+LQRAF TL+EFETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+ +
Sbjct: 179 LGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTSF 233
>gi|307108138|gb|EFN56379.1| hypothetical protein CHLNCDRAFT_144903 [Chlorella variabilis]
Length = 763
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 7/192 (3%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G L+ F + + AY + E + + + P+ V + E D+ +F LE +
Sbjct: 467 GQLEGLFGAVEAMQQAYPE-----EGGAASYHAGLPMAVDALAESEERCDAAFFLLEAWA 521
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ E P S +N V+ C I DL RA++TF+A G+ PD +YNAL+ +
Sbjct: 522 QQERPV-SATQLNLVVAACCQIGDLKRAFETFDAF-EGLGVAPDADTYNALMQGCIETGD 579
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
A RV E + GV+ NA ++ LV+A + D + ++ + AG P L++
Sbjct: 580 VGTAHRVHEQMQGAGVEANAHTHHQLVNAAVVAGDIAGMMESLEALEAAGHTPRLALLER 639
Query: 182 VRRRCVREMDEE 193
R R + E
Sbjct: 640 CVARAERAGERE 651
>gi|414887459|tpg|DAA63473.1| TPA: hypothetical protein ZEAMMB73_429774 [Zea mays]
Length = 452
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 2/58 (3%)
Query: 1 MGDLQRAFITLNEFETAYGDSI-IDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQL 57
+G LQRAF TL+EFE AYG+S +D+E +FSPFTSL+PLVVAC + GF TLD V+ +
Sbjct: 392 IGQLQRAFGTLHEFENAYGNSKDVDLE-LFSPFTSLHPLVVACCKDGFSTLDLVHSHI 448
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F L P+ SYN ++ + K+++ A ++ E ++ G P+ SY+L+V + +
Sbjct: 180 FELEPNSASYNLVLKSMVADKESYGAEKLIERMLQTGTVPDEESYNLVVGLLIRQNLVDS 239
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDE--------ESNDRVEALAKKF---- 205
+L +D M+ +G+ PS + CVR +D ++ D+++ L ++
Sbjct: 240 SLKYLDLMLKSGYTPSLTVFTDYIQACVRSGRLDTLTSIIQKCKTADKIKVLCPQWAWCI 299
Query: 206 DIR---MNTENRKNILFNLEYSASY 227
DI N K LF LE+ A +
Sbjct: 300 DISEAAFEANNSKLALFALEFLARW 324
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V + N +I G DLD A +T S G+TPD+++Y ALI ++ + +A
Sbjct: 273 RTVVSFNTMISGMCRAGDLDGA-ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARG 331
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
VFE + G+KPNA+ +++L+DAH D + L + EM G P T +
Sbjct: 332 VFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLC 391
Query: 188 REMDEESNDRVEALAKKFDIRMNT 211
R D +S + + +R +T
Sbjct: 392 RARDLKSASGIVVEMRSAGLRPDT 415
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D +Y ALI K ++ +A RV ++ G++P+ +Y++++DA D K
Sbjct: 445 GVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTG 504
Query: 161 LSVIDEMVNAGFAPSKET 178
L ++ EM N G P T
Sbjct: 505 LRLLKEMQNKGRKPGVVT 522
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YNA++ + + AS + + S G++P+ ++Y+ L+D + + A
Sbjct: 375 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMA 434
Query: 161 LSVIDEMVNAGFA 173
+ + MV G
Sbjct: 435 MEIKQNMVAEGVG 447
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G P + +YN ++ F KL + A + ++++GV P+ ++Y++L+D H
Sbjct: 515 GRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGH 565
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +Y +I AF + R+ + + + G KP ++Y+++++ K A
Sbjct: 480 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA 539
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ M+N G +P T
Sbjct: 540 DMLLNAMINIGVSPDDIT 557
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V + N +I G DLD A +T S G+TPD+++Y ALI ++ + +A
Sbjct: 149 RTVVSFNTMISGMCRAGDLDGA-ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARG 207
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
VFE + G+KPNA+ +++L+DAH D + L + EM G P T +
Sbjct: 208 VFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLC 267
Query: 188 REMDEESNDRVEALAKKFDIRMNT 211
R D +S + + +R +T
Sbjct: 268 RARDLKSASGIVVEMRSAGLRPDT 291
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D +Y ALI K ++ +A RV ++ G++P+ +Y++++DA D K
Sbjct: 321 GVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTG 380
Query: 161 LSVIDEMVNAGFAPS 175
L ++ EM N G P
Sbjct: 381 LRLLKEMQNKGRKPG 395
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YNA++ + + AS + + S G++P+ ++Y+ L+D + + A
Sbjct: 251 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMA 310
Query: 161 LSVIDEMVNAGFA 173
+ + MV G
Sbjct: 311 MEIKQNMVAEGVG 323
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G P + +YN ++ F KL + A + ++++GV P+ ++Y++L+D H
Sbjct: 391 GRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGH 441
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +Y +I AF + R+ + + + G KP ++Y+++++ K A
Sbjct: 356 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA 415
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ M+N G +P T
Sbjct: 416 DMLLNAMINIGVSPDDIT 433
>gi|147837032|emb|CAN77056.1| hypothetical protein VITISV_020699 [Vitis vinifera]
Length = 323
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDS 52
+GDLQRAF T +EFETAY +S + EE IFSPFTSL+PLV+A S+KGFETLD+
Sbjct: 189 LGDLQRAFSTPHEFETAYRNSPKESEEDIFSPFTSLHPLVMASSKKGFETLDT 241
>gi|401887100|gb|EJT51105.1| hypothetical protein A1Q1_07700 [Trichosporon asahii var. asahii
CBS 2479]
Length = 586
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D +++LE++++ P VAA+N VI NI DL RA T + S G+ PD+ ++
Sbjct: 355 VDQAFYELEDMAQNNEPV-DVAALNAVIAASVNIGDLQRARAT-QLAAESLGVKPDVDTF 412
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N +I A K V L S G+KPNA +Y L+ LT + A +++M
Sbjct: 413 NLVIRACEKAGHRVLGDTVLNELTSAGLKPNAETYEALIHLCLTQVPFEDAFFFLEKMKA 472
Query: 170 AGFAPSKETLKKVRRRCVREMDE 192
G P + ++ +CVR D+
Sbjct: 473 QGVTPPRSVYLELAFKCVRTDDK 495
>gi|406695171|gb|EKC98484.1| hypothetical protein A1Q2_07221 [Trichosporon asahii var. asahii
CBS 8904]
Length = 587
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D +++LE++++ P VAA+N VI NI DL RA T + S G+ PD+ ++
Sbjct: 356 VDQAFYELEDMAQNNEPV-DVAALNAVIAASVNIGDLQRARAT-QLAAESLGVKPDVDTF 413
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N +I A K V L S G+KPNA +Y L+ LT + A +++M
Sbjct: 414 NLVIRACEKAGHRVLGDTVLNELTSAGLKPNAETYEALIHLCLTQVPFEDAFFFLEKMKA 473
Query: 170 AGFAPSKETLKKVRRRCVREMDE 192
G P + ++ +CVR D+
Sbjct: 474 QGVTPPRSVYLELAFKCVRTDDK 496
>gi|108862483|gb|ABA97464.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 675
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GLTPD+ SY AL+ A K K EA RV+EH+
Sbjct: 431 NAVLLACSRAAETSAAVDIFKRMIDQ-GLTPDVVSYGALLSALEKGKLYDEALRVWEHMC 489
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GVKPN +Y++LV ++ + SV+ M++A P+ T + CVR
Sbjct: 490 KVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEPTVVTFNAIISACVR 544
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +SY L L++A + +
Sbjct: 354 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVR 413
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P V C R
Sbjct: 414 LLDKMQQKGLKPGSREWNAVLLACSR 439
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAIN-----CVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
LD+ + +E+L R +N C++ N + R + + + G+ P
Sbjct: 128 LDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIHDVLADMEAQ-GVPP 186
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+I ++N L+ + + K E RVF+ + G+ P A +YS ++ A+ D AAL I
Sbjct: 187 NIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAYKKAGDAFAALKFI 246
Query: 165 D---EMVNAG 171
EM N G
Sbjct: 247 TKLREMYNKG 256
>gi|390602241|gb|EIN11634.1| hypothetical protein PUNSTDRAFT_42835 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 423
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
K + +D + LE + P V A+N V+ C+ + DL RA ++A G+ P
Sbjct: 199 KDADAVDRAWTALEEIHAGGEPV-DVVALNTVLECCSRLQDLQRAIGIYKA-AKDLGVEP 256
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +YN L A LK ++ E + + ++PN +Y + LT + + A +
Sbjct: 257 DVTTYNILFAACTHLKHRELGDKLLEEMRAADIQPNHDTYHRFILLCLTQHNYEDAFFYL 316
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
+EM AGF P + + + R+CV D N VE + +
Sbjct: 317 EEMKKAGFKPPMDVYQSIIRKCVAHKDSRYNIAVEEMVE 355
>gi|115488188|ref|NP_001066581.1| Os12g0283900 [Oryza sativa Japonica Group]
gi|113649088|dbj|BAF29600.1| Os12g0283900 [Oryza sativa Japonica Group]
Length = 675
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GLTPD+ SY AL+ A K K EA RV+EH+
Sbjct: 431 NAVLLACSRAAETSAAVDIFKRMIDQ-GLTPDVVSYGALLSALEKGKLYDEALRVWEHMC 489
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GVKPN +Y++LV ++ + SV+ M++A P+ T + CVR
Sbjct: 490 KVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEPTVVTFNAIISACVR 544
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +SY L L++A + +
Sbjct: 354 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVR 413
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P V C R
Sbjct: 414 LLDKMQQKGLKPGSREWNAVLLACSR 439
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAIN-----CVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
LD+ + +E+L R +N C++ N + R + + + G+ P
Sbjct: 128 LDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIHDVLADMEAQ-GVPP 186
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+I ++N L+ + + K E RVF+ + G+ P A +YS ++ A+ D AAL I
Sbjct: 187 NIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAYKKAGDAFAALKFI 246
Query: 165 D---EMVNAG 171
EM N G
Sbjct: 247 TKLREMYNKG 256
>gi|125579030|gb|EAZ20176.1| hypothetical protein OsJ_35776 [Oryza sativa Japonica Group]
Length = 642
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GLTPD+ SY AL+ A K K EA RV+EH+
Sbjct: 398 NAVLLACSRAAETSAAVDIFKRMIDQ-GLTPDVVSYGALLSALEKGKLYDEALRVWEHMC 456
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GVKPN +Y++LV ++ + SV+ M++A P+ T + CVR
Sbjct: 457 KVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKIEPTVVTFNAIISACVR 511
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +SY L L++A + +
Sbjct: 321 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVR 380
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P V C R
Sbjct: 381 LLDKMQQKGLKPGSREWNAVLLACSR 406
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAIN-----CVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
LD+ + +E+L R +N C++ N + R + + + G+ P
Sbjct: 95 LDAAFAVVEHLKRGSGSGGGGGGVNQFVYNCLLGAVKNSGEFGRIHDVLADMEAQ-GVPP 153
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+I ++N L+ + + K E RVF+ + G+ P A +YS ++ A+ D AAL I
Sbjct: 154 NIVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSAYKKAGDAFAALKFI 213
Query: 165 D---EMVNAG 171
EM N G
Sbjct: 214 TKLREMYNKG 223
>gi|393217309|gb|EJD02798.1| hypothetical protein FOMMEDRAFT_86064 [Fomitiporia mediterranea
MF3/22]
Length = 407
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E +D Y LE L + E V A+N +I CA + DL RA ++ + SS G+ PD
Sbjct: 202 ELIDGAYALLEELHK-EGSTVDVIAVNVLIKACAMLNDLQRAVGIYKTM-SSLGVQPDAE 259
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y L+ A + R+F + G+ P A S+ L+ LT D + A ++EM
Sbjct: 260 TYEMLLKACRAARHVELGERLFNEMREAGLNPTARSFERLISLVLTQTDYENAFFYLEEM 319
Query: 168 VNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+G PS T + + ++CV D VE L K+ R+++
Sbjct: 320 KVSGHTPSYPTYEDIVKKCVSASDGRYKLAVEEL-KQMGYRVSS 362
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
++NL R P + N VI G LD A + F+ + +S G+ PD++SY+ LI F
Sbjct: 268 IQNLCRKNQPLNN-HCFNAVIYGLCQGGILDEASEVFKEMKNS-GILPDVYSYSILIDGF 325
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + +AS VF+ + + G+ PN SYS+L+D AL V +EM N+G P
Sbjct: 326 CRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILP 383
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A + F+ + +S G+ P+I+SY+ LI F K + +A VFE + + G+ P+ SYS
Sbjct: 331 VDQASEVFKEMRNS-GILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYS 389
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L+D D +A+ +EM + F+PS
Sbjct: 390 ILIDGFCRKGDMDSAIKFWEEMTSNNFSPS 419
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
H +NA+IY + EAS VF+ + + G+ P+ SYS+L+D A V E
Sbjct: 281 HCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKE 340
Query: 167 MVNAGFAPS 175
M N+G P+
Sbjct: 341 MRNSGILPN 349
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A + FE + +S G+ PD++SY+ LI F + A + +E + S P+A +Y
Sbjct: 366 VDKALEVFEEMKNS-GILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYC 424
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + ++ AL M G P
Sbjct: 425 SLIKGYYKSKQFANALKEFRIMQKLGMWP 453
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
IN I C +D AY+ F+ + S + PD +Y +L+ F + A +F+ +
Sbjct: 567 INLFISDC----KMDVAYRLFKGMKES-RVYPDQIAYTSLVAGFCNTGEMTRARALFDEM 621
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G PN ++Y+ ++ +L A + ++M G P +
Sbjct: 622 SREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQ 665
>gi|147855498|emb|CAN83858.1| hypothetical protein VITISV_014675 [Vitis vinifera]
Length = 257
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDS 52
+G+LQRAF L+EFETAY +S + EE IFSPFTSL+PLV+A S KGFETLD+
Sbjct: 186 LGNLQRAFSXLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSXKGFETLDT 238
>gi|125536310|gb|EAY82798.1| hypothetical protein OsI_38004 [Oryza sativa Indica Group]
Length = 669
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GLTPD+ SY AL+ A K K EA RV+EH+
Sbjct: 425 NAVLLACSRAAETSAAVDIFKRMIDQ-GLTPDVVSYGALLSALEKGKLYDEALRVWEHMC 483
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GVKPN +Y++LV ++ + SV+ M++A P+ T + CVR
Sbjct: 484 KVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKVEPTVVTFNAIISACVR 538
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +SY L L++A + +
Sbjct: 348 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVR 407
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P V C R
Sbjct: 408 LLDKMQQKGLKPGSREWNAVLLACSR 433
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAI--NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
LD+ + +E+L R V NC++ N + R + + + G+ P++
Sbjct: 125 LDAAFAVVEHLKRGSGSGGGVNQFVYNCLLGAVKNSGEFGRIHDVLADMEAQ-GIPPNVV 183
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA---LSVI 164
++N L+ + + K E RVF+ + G+ P A +YS ++ ++ D AA L+ +
Sbjct: 184 TFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSSYKKAGDAFAALKFLTKL 243
Query: 165 DEMVNAG 171
EM N G
Sbjct: 244 REMYNKG 250
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K EA ++
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEAHKL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ ++ G+ PN ++++ L+D H N A+ + +M++ GF+P T
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXIT 278
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+ + + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDGI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDEAHKLFDEMLDRGLVPNGVT 243
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N LD A + ++ + S G +PD +YN LIY K +A + + + G+KP
Sbjct: 252 CKN-GKLDLAMEIYKQMLSQ-GFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKP 309
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+ ++Y+ L+D D + A M+
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIK 339
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
SY ALI K ++ +A ++ ++S+G+KP+ +Y++++ N D K ++ EM
Sbjct: 348 SYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEM 407
Query: 168 VNAGFAP 174
G P
Sbjct: 408 QRDGHVP 414
>gi|58262548|ref|XP_568684.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134118990|ref|XP_771998.1| hypothetical protein CNBN1760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254602|gb|EAL17351.1| hypothetical protein CNBN1760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230858|gb|AAW47167.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 551
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 21 SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80
S I + +S+ P+V A K E +D Y+ LE++ ++ + A+N VI
Sbjct: 322 STIRSTGLTPTLSSIQPIVNAL--KSAEVIDQAYYTLEDMHKSGQAV-DITALNAVIAAS 378
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
++I DL RA T A+ FG+TP+I +YN ++ + + + V+PN
Sbjct: 379 SSIGDLQRARATQSAI-PEFGMTPNIDTYNLVLQCCVTTSHRPLGDTLLSEMAAQNVQPN 437
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A +Y L+ LT + A +++M GF P + ++CV+ D
Sbjct: 438 ATTYDHLIHLCLTQPSYEDAFYYLEKMKAGGFKPGYAVYASLVKKCVKMGD 488
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAINCVILGCANI 83
++E P Y ++V C D+V YF+ L+ +P + N +I G
Sbjct: 955 IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDP---DTVSYNLMINGLGKS 1011
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
L+ A F + + G++P++++YNALI FG +A ++FE L +G++PN +
Sbjct: 1012 RRLEEALSLFSEMKNR-GISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFT 1070
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
Y+ L+ H + ++ A SV +M+ G +P+ T ++ +C
Sbjct: 1071 YNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A+ + V G+ P++H+YN LI L++ EA +F ++ SLGV P A SY
Sbjct: 383 VDQAFDMLD-VMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYV 441
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L +D + D + AL ++M G PS
Sbjct: 442 LFIDYYGKLGDPEKALDTFEKMKKRGIMPS 471
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 35 LYPLV-VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF 93
+ PL+ V C +K + LD+ + +++ + + + NC++ G + A + F
Sbjct: 755 ILPLIRVLCKQK--KALDAKKL-FDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLF 811
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ ++ G P+I +YN L+ A GK K+ E ++ ++ G KPN +++++++ A +
Sbjct: 812 VEMKNA-GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ AL + E+++ F+P+ T
Sbjct: 871 SNSINKALDLYYEIISGDFSPTPCT 895
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP + Y +++ C K + + E LS P + +N +I +D
Sbjct: 503 LSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEP--DIIVVNSLIDTLYKAGRVDE 560
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A+Q F + L P + +YN LI GK K +A +F + G PN ++++ L+
Sbjct: 561 AWQMFGRL-KDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALL 619
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
D N AL + M +P T + ++E
Sbjct: 620 DCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKE 660
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +SYN LIY + EA +V++ ++S G+KP+ +YS L+ A RD
Sbjct: 187 GFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTI 246
Query: 161 LSVIDEMVNAGFAPS 175
+ +++EM G P+
Sbjct: 247 MDLLEEMETLGLRPN 261
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ A + FE + + P+ YN LI FGK A +F+ ++ G++P+ SY++
Sbjct: 910 EEAMKIFEEM-PDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTI 968
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LV+ A+ +E+ G P
Sbjct: 969 LVECLFMTGRVDDAVHYFEELKLTGLDP 996
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y L+ A K K +A + + + G+ PN +Y+ L+ L R A
Sbjct: 362 GYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEA 421
Query: 161 LSVIDEMVNAGFAPS 175
L + + M + G AP+
Sbjct: 422 LELFNNMESLGVAPT 436
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P + +Y+AL+ A G+ + T + E + +LG++PN +Y++ +
Sbjct: 220 SEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRID 279
Query: 159 AALSVIDEMVNAGFAP 174
A ++ M + G P
Sbjct: 280 DAYGILKTMEDEGCGP 295
>gi|409039282|gb|EKM48927.1| hypothetical protein PHACADRAFT_265975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 497
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD++ AF L E + + E SP +Y ++ + + +D Y LE+L
Sbjct: 239 GDVKEAFGVL---ELMRNNDVPPTLETASP---IYEVISGSA----DIVDEAYGMLEDL- 287
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R E VAA N VI C + DL RA T++ G G+TP+I +YN L+ A
Sbjct: 288 RNEKRTVDVAAFNVVIQACVALMDLQRALGTYQVAGD-LGVTPNIDTYNLLLSACVSAGH 346
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
R+ + V P+A +Y LV LT + A ++EM G P++ +
Sbjct: 347 RQLGDRLINDMREASVAPDAYTYERLVSLCLTQPTYEDAFYYLEEMKTRGIRPTQLIYES 406
Query: 182 VRRRC 186
+ R+C
Sbjct: 407 IIRKC 411
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKVDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H N +A+ + +M++ GF+P
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSP 274
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ RA F+A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 151 EMRRAQSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S+L++ A + +EM++ G P+ T
Sbjct: 210 SVLINGLCKESKVDEANELFNEMLDRGLVPNGVTF 244
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ F + D +Y AL+ + + +A ++F ++S+
Sbjct: 317 LIDGCCKEGDLETAFE-FRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSV 375
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+KP+ +Y+++++ D + A ++ EM G P
Sbjct: 376 GLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414
>gi|242096916|ref|XP_002438948.1| hypothetical protein SORBIDRAFT_10g028800 [Sorghum bicolor]
gi|241917171|gb|EER90315.1| hypothetical protein SORBIDRAFT_10g028800 [Sorghum bicolor]
Length = 678
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GL PD+ SY AL+ A K K EA RV+EH+
Sbjct: 437 NAVLLSCSRASEASAAVDIFKKMVDE-GLKPDVVSYGALLSALEKGKLYDEALRVWEHMC 495
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+G+KPN +Y++LV ++ + +V+ +MV+ P+ T + CVR
Sbjct: 496 KVGIKPNLYAYTILVSIYIGKGNHAMVDAVLHDMVSKQIEPTVVTFNAIISACVR 550
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +S+ L L+DA + +
Sbjct: 360 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSHELIMSHFKILLDAAKRRGIWRWGVR 419
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
++++M G P + V C R E++ V+ K D
Sbjct: 420 LLNKMQEKGLKPGSKEWNAVLLSCSRA--SEASAAVDIFKKMVD 461
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ + + + A +F+ +V G+KP+ +SY L+ A + A
Sbjct: 428 GLKPGSKEWNAVLLSCSRASEASAAVDIFKKMVDEGLKPDVVSYGALLSALEKGKLYDEA 487
Query: 161 LSVIDEMVNAGFAPS 175
L V + M G P+
Sbjct: 488 LRVWEHMCKVGIKPN 502
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 66 PY--KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
PY V + N +I G I ++D+A++ F+ +G+ FG PDI SYN LI F ++ +
Sbjct: 208 PYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGN-FGCFPDIVSYNTLINGFCRVNEIS 266
Query: 124 EASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + E ++ GV P+ ++Y+ ++ + D KAA + DEMV++G P+ T
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D+ A + F+ + SS G+ P+ ++N LI FGK+ A ++E ++ L
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSS-GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P+ ++++ L+D + + L + +EM +P+ T
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYT 392
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 66 PY--KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
PY V + N +I G I ++D+A++ F+ +G+ FG PDI SYN LI F ++ +
Sbjct: 208 PYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGN-FGCFPDIVSYNTLINGFCRVNEIS 266
Query: 124 EASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + E ++ GV P+ ++Y+ ++ + D KAA + DEMV++G P+ T
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D+ A + F+ + SS G+ P+ ++N LI FGK+ A ++E ++ L
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSS-GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P+ ++++ L+D + + L + +EM +P+ T
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYT 392
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K + EA+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMRAS-GVQPDVYTYSVLINGLCKESRMDEANGL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H N A+ + +M+N GF+P
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSP 274
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + EM++ G P+ T
Sbjct: 214 NGLCKESRMDEANGLFGEMLDNGLVPNGVT 243
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 271 GFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETA 330
Query: 161 LSVIDEMV 168
+ + M+
Sbjct: 331 FELRERMI 338
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+ + FSP Y L+ +KG L + L+ +SR + +I G
Sbjct: 268 LNQGFSPDVVTYNTLIYGLCKKG--DLKQARYLLDEMSRKGLKPDKITYTT-LIDGSCKE 324
Query: 84 WDLDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
DL+ A++ E + S L D Y ALI+ + + +A ++ ++ +G+KP+
Sbjct: 325 GDLETAFELRERMIKESIRL--DDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDE 382
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y+++++ D K A ++ EM G P
Sbjct: 383 TYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V +N VI GC L RA + +E +GS G PD+H+YN L++ KL + A
Sbjct: 312 PEVNVVMLNTVIRGCLAEGKLARATELYEMMGSK-GCPPDVHTYNILMHGLCKLGRCGSA 370
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
R+ + + G PN ++YS L+ + N A +++D+M GF+
Sbjct: 371 VRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFS 418
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN LI K+ T A + E L + V P+ ++Y++L+ H R A
Sbjct: 591 GLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDA 650
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++D+ V+ G P++ T + + VR+
Sbjct: 651 SMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + + + S G PDI +YN +IY + EA +F +L+ GV N ++Y+
Sbjct: 437 LDEAMRLVQEMKSQ-GCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYN 495
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
L+ A L + + L + +EMV G
Sbjct: 496 TLIHALLHSGRWQEGLRLANEMVLHG 521
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 80 CAN-IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C N +WD RA S+ G + + YN +IYA GK K EA R+ + + S G K
Sbjct: 397 CRNGMWDDARAMLDQM---SAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCK 453
Query: 139 PNAMSYSLLVDAHLTNRDQ 157
P+ +Y+ ++ HL N DQ
Sbjct: 454 PDICTYNTII-YHLCNNDQ 471
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ SYN LI A K + + E +++ G+KPN SY++L++ + A
Sbjct: 521 GCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDA 580
Query: 161 LSVIDEMVNAGFAP 174
L + EM+N G P
Sbjct: 581 LELSKEMLNQGLTP 594
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHGS-GIQPDVYTYSVLINGLCKESKMNDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H A+ EM+ GF+P T + +
Sbjct: 229 FDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
E D +++ D ++ ++ K
Sbjct: 289 EGDLKQAQDLIDEMSMK 305
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +GL P + S+N L+ + +L E R+ + G++P+ +YS+L++
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKM 222
Query: 158 KAALSVIDEMVNAGFAPSKETL 179
A + DEM+ G P+ T
Sbjct: 223 NDANELFDEMIGNGLVPNGVTF 244
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330
Query: 161 LSVIDEMV 168
M+
Sbjct: 331 FKYKKRMI 338
>gi|15221081|ref|NP_172636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200496|sp|Q9SAA6.1|PPR34_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11710, mitochondrial; Flags: Precursor
gi|4835786|gb|AAD30252.1|AC007296_13 F25C20.14 [Arabidopsis thaliana]
gi|22655109|gb|AAM98145.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|30725498|gb|AAP37771.1| At1g11710 [Arabidopsis thaliana]
gi|332190652|gb|AEE28773.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-NIWDLDRAYQTFEAV 96
LV AC++ G Y +E +RAE SV A+N +GC N+ ++DR ++ ++ +
Sbjct: 154 LVRACTQNG--DAQGAYEVIEQ-TRAEGFCVSVHALNN-FMGCLLNVNEIDRFWKVYKEM 209
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G +++++N +IY+F K K FEA VF ++ GV PN +S+++++D D
Sbjct: 210 -DSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGD 268
Query: 157 QKAALSVIDEM 167
+ AL ++ +M
Sbjct: 269 MRFALQLLGKM 279
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG--L 102
K FE L SV++++ + +V + N +I G D+ A Q +G G +
Sbjct: 233 KLFEAL-SVFYRMLKCG----VWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFV 287
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P+ +YN++I F K + A R+ +V GV N +Y LVDA+ AL
Sbjct: 288 SPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALR 347
Query: 163 VIDEMVNAGFA 173
+ DEM + G
Sbjct: 348 LCDEMTSKGLV 358
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFE 130
A N V+ C DLD A +G S G P D SYN +I + K +A +VF+
Sbjct: 159 AWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFD 218
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V +GV PN ++Y+ ++D H+ D +A + D+M++ G P+ T
Sbjct: 219 EMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVT 266
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ S+ +++ AF K K EA + + ++ V PNA Y+ ++DA++ + D + A
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528
Query: 161 LSVIDEMVNAGFAPS 175
L ++++M N+G + S
Sbjct: 529 LLLVEKMKNSGVSAS 543
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I C N D D+A + + + + +G+ P + + + L+ A + + ++
Sbjct: 579 VVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTCHTLVSALASAGRVHDMECLY 637
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ ++ V+P++ Y ++VDA++ + S+ EM G A
Sbjct: 638 QQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + DL A+ FE + S + PD +YNALI KL+ +A + +
Sbjct: 373 NTLINGYCQVRDLRGAFCIFEQMKSRH-IRPDHITYNALINGLCKLEMVTKAEDLVMEME 431
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
GV P+ +++ L+DA+ T + +V+ +M G
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 70 VAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ A C IL G + +A Q FE + + GL P YN LI + +++ A
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQVFEMLVHT-GLVPTTVIYNTLINGYCQVRDLRGAFC 390
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+FE + S ++P+ ++Y+ L++ A ++ EM +G PS ET
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVET 441
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G + + V + G+K + +S+ +V A N A
Sbjct: 434 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 493
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M+ AP+ + +
Sbjct: 494 VAILDDMIYKDVAPNAQVYNSI 515
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 67 YKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
YK VA N +I D ++A E + +S G++ I +YN L+ + +
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNS-GVSASIVTYNLLLKGLCRSSQI 560
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA + L + G++P+ +SY+ ++ A D AL ++ EM G P+ T
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 616
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ A ++DR ++ + + S G PD S+N ++ A GK K A VF +V
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEM-SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G KP+ +SY++L+D++ D A +++EMV AGF P +T
Sbjct: 338 ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKT 382
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 19/179 (10%)
Query: 10 TLNEFETAYG--DSIIDMEEIFSPFTSLYPLVVACSR--KGFETLDSVYFQLENLSRAEP 65
TL + TAYG + D ++F+ S ACS F L + RAE
Sbjct: 32 TLVKLITAYGRGNKSGDAFDLFNQAESF-----ACSPTVHAFTKLIDILVNSGEFERAEL 86
Query: 66 PYKSVA---------AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
YK + A N +I LD A + F + G PD ++Y L+ A
Sbjct: 87 VYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIK-GSEPDEYTYGFLVNAL 145
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GK + EA F+ ++ G+ PN +Y+LL+DA AL + EM GF PS
Sbjct: 146 GKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPS 204
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I A +D A+ E + ++ G PD+ +YN L+ GK + A+R+F+ +
Sbjct: 384 NSLIHWLATDGQVDEAFAVLEEMETA-GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMK 442
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
GV+P+ +SY++ +D + AL + +M G K + + R R D E
Sbjct: 443 DKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTE 502
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVI--LGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
+D V+ ++ +SR + + + N ++ LG AN D A + F + S G PD+
Sbjct: 291 MDRVWKLMKEMSR-KGFHPDAFSFNTIMDALGKAN--KPDAAREVFARMVES-GCKPDLI 346
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
SYN LI ++ + +A ++ E +V G P +Y+ L+ T+ A +V++EM
Sbjct: 347 SYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406
Query: 168 VNAGFAPSKETLKKV 182
AG P T ++
Sbjct: 407 ETAGCRPDVVTYNRL 421
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP+I +YN L+ AF K+ + A +F + G +P+ ++Y++L+DA + AA
Sbjct: 165 GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +M G +P T
Sbjct: 225 RKLFHKMTGDGCSPDSYT 242
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 35 LYPLVVACSRKGFETLDSVYFQ--LENLSRAEPP---------------YKSVAAINCVI 77
++ L+ SRKGF D+ F ++ L +A P + + N +I
Sbjct: 294 VWKLMKEMSRKGFHP-DAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI 352
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
A D +A Q E + + G P+ +YN+LI+ + EA V E + + G
Sbjct: 353 DSYARFGDAAQARQMLEEMVEA-GFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC 411
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+P+ ++Y+ L+D + + A + +M + G P
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
+E +P Y L++ RK + ++ E R P SV N ++ +
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQP--SVVTYNILLDALCSAG 219
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ A + F + + G +PD ++Y+ L+ GK + EA +VF +V GV + ++Y
Sbjct: 220 RVGAARKLFHKM-TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+ + ++ EM GF P
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHP 308
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I AN DLD A S G P++ +Y ALI AF + KK EA ++ E +
Sbjct: 31 IITAMANAGDLDGAMDHLR----SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 86
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G PN ++Y++LVDA AA V+ +M+ GFAP+ T
Sbjct: 87 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 129
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ F K +A ++ +V+ G++PN ++YS L+D ++ A
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181
Query: 161 LSVIDEMVNAGFAP 174
V++EM +G P
Sbjct: 182 KEVLEEMKASGVTP 195
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y +I K + EA + + + G PN ++Y+ L+ R A
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 392
Query: 161 LSVIDEMVNAGFAPS 175
V++EM NAG P+
Sbjct: 393 ERVMEEMRNAGCPPN 407
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +Y+ALI K +K EA V E + + GV P+A +YS L+ + A
Sbjct: 157 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA 216
Query: 161 LSVIDEMVNAGFAP 174
++ M +G P
Sbjct: 217 EQMLRRMAGSGCTP 230
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSP--FTSLYPLVVACSRKGFETLDSVYFQLEN 59
GDL A L E ++A F+P FT P++ A + G LD L +
Sbjct: 4 GDLHAALELLEEMKSAG----------FAPDAFTH-TPIITAMANAG--DLDGAMDHLRS 50
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ +P +V +I A L+ A + E + G P++ +YN L+ A KL
Sbjct: 51 MG-CDP---NVVTYTALIAAFARAKKLEEAMKLLEEM-RERGCPPNLVTYNVLVDALCKL 105
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A V + ++ G PN M+++ LVD + A ++ MV G P+
Sbjct: 106 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 161
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 49/114 (42%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V N VI G + + A + + S + PD+ +Y+ +I K
Sbjct: 259 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDM 318
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++ + + G P+ ++Y+ ++D + A ++ M AG AP+
Sbjct: 319 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 372
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++ A Q + S G TPD+ Y+++I+AF K K EA + + +
Sbjct: 203 LIHGLCKADKIEEAEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 261
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
P+ ++Y+ ++D A ++D+M +G
Sbjct: 262 RKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + E + +S G+TPD +Y+ALI+ K K EA ++ + G P+ + YS ++
Sbjct: 181 AKEVLEEMKAS-GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239
Query: 149 DAHLTNRDQKAALSVIDEM 167
A + A + EM
Sbjct: 240 HAFCKSGKLLEAQKTLQEM 258
>gi|226507856|ref|NP_001143319.1| uncharacterized protein LOC100275894 [Zea mays]
gi|195617622|gb|ACG30641.1| hypothetical protein [Zea mays]
Length = 665
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GL PD+ SY AL+ A K + EA RV+EH+
Sbjct: 422 NAVLLACSRASETSAAVDVFKKM-MERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMR 480
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
LG++PN +Y++L ++ D A +V+ +M++ AP+ T + C R
Sbjct: 481 RLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAIISACAR 535
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +S+ L L+DA + +
Sbjct: 345 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSHELIMSHFNVLLDAAKRRGIWRWGVR 404
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P + V C R
Sbjct: 405 LLDKMQEKGLKPGGKEWNAVLLACSR 430
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A + +T A VF+ ++ G+KP+ +SY L+ A R A
Sbjct: 413 GLKPGGKEWNAVLLACSRASETSAAVDVFKKMMERGLKPDVVSYGALLSALEKGRLYDEA 472
Query: 161 LSVIDEMVNAGFAPS 175
L V + M G P+
Sbjct: 473 LRVWEHMRRLGIEPN 487
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
CVI G D A+ E + G+ P+ YN L+ A + V + +
Sbjct: 114 TCVIRGLGKGNSPDAAFAVVEHL-KRRGVVPNQFVYNCLLGAVKSCGELGRVQSVLDDME 172
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ GV PN ++++ L+ H+ + AL V ++ G P+ T V
Sbjct: 173 AQGVPPNIVTFNTLMSIHVQQGRVEDALRVYADVQGRGLVPTAATYSTV 221
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD +RAF L+E G I + +TSL + V R + D+++ +++
Sbjct: 405 GDAKRAFGLLDEM---VGKGI---QPTLVTYTSL--IYVLGKRNRMKEADALFSKIQQ-- 454
Query: 62 RAEPPYKSVAAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
E + N +I G CAN ++DRA+Q + + + + PD +YN L+ + +
Sbjct: 455 --EGLLPDIIVFNALIDGHCAN-GNIDRAFQLLKEM-DNMKVLPDEITYNTLMQGYCREG 510
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
K EA ++ + + G+KP+ +SY+ L+ + D K A V DEM+ GF P+ T
Sbjct: 511 KVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYN 570
Query: 181 K-VRRRCVREMDEESNDRVEALAKK 204
++ C + E + + ++ + K
Sbjct: 571 ALIQGLCKNQEGEHAEELLKEMVSK 595
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G RA F+ + GL PD ++YN+ I K + EAS +
Sbjct: 250 NVVTYNTIIHGHCLRGKFQRARVIFQTMKDK-GLEPDCYTYNSFISGLCKEGRLEEASGL 308
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ G+ PNA++Y+ L+D + D A + DEM++ G S
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMAS 355
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G N DLD+AY + + S G+ + +YN I+A + +A + + +
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISK-GIMASLVTYNLFIHALFMEGRMGDADNMIKEMR 383
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ P+A+++++L++ + D K A ++DEMV G P+
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPT 425
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
++++N +I K K +A H+ +LGVKPN ++Y+ ++ H + A +
Sbjct: 216 LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQ 275
Query: 166 EMVNAGFAP 174
M + G P
Sbjct: 276 TMKDKGLEP 284
>gi|321265684|ref|XP_003197558.1| hypothetical protein CGB_N2560W [Cryptococcus gattii WM276]
gi|317464038|gb|ADV25771.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 550
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 1 MGDLQRAFITLNEFETAYGD-SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G L AF + A+ S I + +S+ P+V K E +D Y+ LE+
Sbjct: 298 LGPLLEAFCNAGQVPNAFHVLSTIRSTGLTPTLSSIQPIVNVL--KSAEVIDQAYYTLED 355
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ ++ + A+N VI + I DL RA T A+ FG+TP I +YN ++
Sbjct: 356 MHKSGQAV-DITALNAVIAASSAIGDLQRARATQSAI-PEFGVTPTIDTYNCVLQCCVIT 413
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + + ++PNA +Y L++ LT + A +++M GF P
Sbjct: 414 SHRALGDTLLSEMAAQDIQPNATTYDYLINLCLTQPAYEDAFYYLEKMKADGFKPGYAVY 473
Query: 180 KKVRRRCVREMD 191
+ ++CV+ D
Sbjct: 474 ASLVKKCVKMGD 485
>gi|413943230|gb|AFW75879.1| hypothetical protein ZEAMMB73_724096 [Zea mays]
Length = 665
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GL PD+ SY AL+ A K + EA RV+EH+
Sbjct: 422 NAVLLACSRASETSAAVDVFKKM-VERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMR 480
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
LG++PN +Y++L ++ D A +V+ +M++ AP+ T + C R
Sbjct: 481 RLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAIISACAR 535
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A + +T A VF+ +V G+KP+ +SY L+ A R A
Sbjct: 413 GLKPGGKEWNAVLLACSRASETSAAVDVFKKMVERGLKPDVVSYGALLSALEKGRLYDEA 472
Query: 161 LSVIDEMVNAGFAPS 175
L V + M G P+
Sbjct: 473 LRVWEHMRRLGIEPN 487
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +S+ L L+DA + +
Sbjct: 345 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSHELIMSHFNVLLDAAKRRGIWRWGVR 404
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P + V C R
Sbjct: 405 LLDKMQEKGLKPGGKEWNAVLLACSR 430
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
CVI G D A+ E + G+ P+ YN L+ A + V + +
Sbjct: 114 TCVIRGLGKGNSPDAAFAVVEHL-KRRGVVPNQFVYNCLLGAVKSCGELGRVQAVLDDME 172
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ GV PN ++++ L+ H+ + AL V ++ G P+ T V
Sbjct: 173 AQGVPPNIVTFNTLMSIHVQQGRVEDALRVYADVQGRGLVPTAATYSTV 221
>gi|413943231|gb|AFW75880.1| hypothetical protein ZEAMMB73_724096 [Zea mays]
Length = 702
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GL PD+ SY AL+ A K + EA RV+EH+
Sbjct: 459 NAVLLACSRASETSAAVDVFKKM-VERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMR 517
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
LG++PN +Y++L ++ D A +V+ +M++ AP+ T + C R
Sbjct: 518 RLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAIISACAR 572
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A + +T A VF+ +V G+KP+ +SY L+ A R A
Sbjct: 450 GLKPGGKEWNAVLLACSRASETSAAVDVFKKMVERGLKPDVVSYGALLSALEKGRLYDEA 509
Query: 161 LSVIDEMVNAGFAPS 175
L V + M G P+
Sbjct: 510 LRVWEHMRRLGIEPN 524
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G KPN +S+ L L+DA + +
Sbjct: 382 NHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSHELIMSHFNVLLDAAKRRGIWRWGVR 441
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P + V C R
Sbjct: 442 LLDKMQEKGLKPGGKEWNAVLLACSR 467
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
CVI G D A+ E + G+ P+ YN L+ A + V + +
Sbjct: 151 TCVIRGLGKGNSPDAAFAVVEHL-KRRGVVPNQFVYNCLLGAVKSCGELGRVQAVLDDME 209
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ GV PN ++++ L+ H+ + AL V ++ G P+ T V
Sbjct: 210 AQGVPPNIVTFNTLMSIHVQQGRVEDALRVYADVQGRGLVPTAATYSTV 258
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G ++ +++ A + +A+ G+ PD ++Y +LI K + EAS +
Sbjct: 261 NVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGL 319
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ +V +G+ PNA++Y+ L+D + D + A S DEMV G PS T
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 369
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI +G+ +A RV + ++S+G P ++Y+ L+ N++ A
Sbjct: 537 GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 596
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EMVN G +P T
Sbjct: 597 EELLKEMVNKGISPDDST 614
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC----SRKGFETLDSVYFQL 57
GDL+RAF +Y D ++ ++ P S Y L+V R G D + ++
Sbjct: 346 GDLERAF--------SYRDEMV--KKGIMPSVSTYNLLVHALFMEGRMG--EADDMIKEM 393
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
R + N +I G + + +A+ + S G+ P +Y +LIY
Sbjct: 394 ----RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK-GIEPTHVTYTSLIYVLS 448
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ + EA +FE ++ GV P+ + ++ +VD H N + + A ++ EM P +
Sbjct: 449 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEV 508
Query: 178 TLKKVRR-RCVREMDEESNDRVEALAKK 204
T + + RC EE+ ++ + ++
Sbjct: 509 TFNTLMQGRCREGKVEEARMLLDEMKRR 536
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+ ++AF NE + +E +TSL + V R + D ++ ++ L
Sbjct: 416 GNAKKAFDLHNEMLSK------GIEPTHVTYTSL--IYVLSRRNRMKEADDLFEKI--LD 465
Query: 62 RAEPPYKSVAAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ P V N ++ G CAN +++RA+ + + + PD ++N L+ +
Sbjct: 466 QGVSP--DVIMFNAMVDGHCAN-GNVERAFMLLKEMDRK-SVPPDEVTFNTLMQGRCREG 521
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K EA + + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+
Sbjct: 522 KVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 576
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G ++ +++ A + +A+ G+ PD ++Y +LI K + EAS +
Sbjct: 283 NVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGL 341
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ +V +G+ PNA++Y+ L+D + D + A S DEMV G PS T
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 391
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI +G+ +A RV + ++S+G P ++Y+ L+ N++ A
Sbjct: 559 GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 618
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EMVN G +P T
Sbjct: 619 EELLKEMVNKGISPDDST 636
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC----SRKGFETLDSVYFQL 57
GDL+RAF +Y D ++ ++ P S Y L+V R G D + ++
Sbjct: 368 GDLERAF--------SYRDEMV--KKGIMPSVSTYNLLVHALFMEGRMG--EADDMIKEM 415
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
R + N +I G + + +A+ + S G+ P +Y +LIY
Sbjct: 416 ----RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK-GIEPTHVTYTSLIYVLS 470
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ + EA +FE ++ GV P+ + ++ +VD H N + + A ++ EM P +
Sbjct: 471 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEV 530
Query: 178 TLKKVRR-RCVREMDEESNDRVEALAKK 204
T + + RC EE+ ++ + ++
Sbjct: 531 TFNTLMQGRCREGKVEEARMLLDEMKRR 558
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+ ++AF NE + +E +TSL + V R + D ++ ++ L
Sbjct: 438 GNAKKAFDLHNEMLSK------GIEPTHVTYTSL--IYVLSRRNRMKEADDLFEKI--LD 487
Query: 62 RAEPPYKSVAAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ P V N ++ G CAN +++RA+ + + + PD ++N L+ +
Sbjct: 488 QGVSP--DVIMFNAMVDGHCAN-GNVERAFMLLKEMDRK-SVPPDEVTFNTLMQGRCREG 543
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K EA + + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+
Sbjct: 544 KVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 598
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G ++ +++ A + +A+ G+ PD ++Y +LI K + EAS +
Sbjct: 207 NVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGL 265
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ +V +G+ PNA++Y+ L+D + D + A S DEMV G PS T
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI +G+ +A V + ++S+G P ++Y+ L+ N++ A
Sbjct: 483 GIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 542
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EMVN G +P T
Sbjct: 543 EELLKEMVNKGISPDDST 560
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+ +RAF NE + +E +TSL + V R + D ++ ++ L
Sbjct: 362 GNAKRAFDLHNEMLSK------GIEPTHVTYTSL--IYVLSRRNRMKEADDLFEKI--LD 411
Query: 62 RAEPPYKSVAAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ P V N +I G CAN +++RA+ + + + PD ++N L+ +
Sbjct: 412 QGVSP--DVIMFNAMIDGHCAN-GNVERAFMLLKEMDRK-SVPPDEVTFNTLMQGRCREG 467
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K EA + + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+
Sbjct: 468 KVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPT 522
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC----SRKGFETLDSVYFQL 57
GDL+RAF +Y D ++ ++ P S Y L+V R G D + ++
Sbjct: 292 GDLERAF--------SYRDEMV--KKGIMPSVSTYNLLVHALFMEGRMG--EADDMIKEM 339
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
R + N +I G + + RA+ + S G+ P +Y +LIY
Sbjct: 340 ----RKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSK-GIEPTHVTYTSLIYVLS 394
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ + EA +FE ++ GV P+ + ++ ++D H N + + A ++ EM P +
Sbjct: 395 RRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEV 454
Query: 178 TLKKVRRRCVRE 189
T + + RE
Sbjct: 455 TFNTLMQGRCRE 466
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I AN DLD A S G P++ +Y ALI AF + KK EA ++ E +
Sbjct: 153 IITAMANAGDLDGAMDHLR----SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G PN ++Y++LVDA AA V+ +M+ GFAP+ T
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 251
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ F K +A ++ +V+ G++PN ++YS L+D ++ A
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 303
Query: 161 LSVIDEMVNAGFAP 174
V++EM G P
Sbjct: 304 KEVLEEMKTRGVTP 317
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +Y+ALI K +K EA V E + + GV P+A +YS L+ + A
Sbjct: 279 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA 338
Query: 161 LSVIDEMVNAGFAP 174
++ M +G P
Sbjct: 339 EQMLRRMAGSGCTP 352
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
A S G + S+N+L+ + KK EA +F + +P+ SY++++
Sbjct: 66 APASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNA 125
Query: 155 RDQKAALSVIDEMVNAGFAP 174
D AAL +++EM +AGFAP
Sbjct: 126 GDLHAALELLEEMKSAGFAP 145
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y +I K + EA + + + G PN ++Y+ L+ R A
Sbjct: 455 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 514
Query: 161 LSVIDEMVNAGFAPS 175
V++EM NAG P+
Sbjct: 515 ERVMEEMRNAGCPPN 529
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSP--FTSLYPLVVACSRKGFETLDSVYFQLEN 59
GDL A L E ++A F+P FT P++ A + G LD L +
Sbjct: 126 GDLHAALELLEEMKSAG----------FAPDAFTH-TPIITAMANAG--DLDGAMDHLRS 172
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ +P +V +I A L+ A + E + G P++ +YN L+ A KL
Sbjct: 173 MG-CDP---NVVTYTALIAAFARAKKLEEAMKLLEEM-RERGCPPNLVTYNVLVDALCKL 227
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A V + ++ G PN M+++ LVD + A ++ MV G P+
Sbjct: 228 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N VI G + + A E + S + PD+ +Y+ +I K EA ++
Sbjct: 389 VVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 448
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + G P+ ++Y+ ++D + A ++ M AG AP+
Sbjct: 449 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 494
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++ A Q + S G TPD+ Y+++I+AF K K EA + + +
Sbjct: 325 LIHGLCKADKIEEAEQMLRRMAGS-GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 383
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
P+ ++Y+ ++D A ++++M +G
Sbjct: 384 RKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD +Y+ALI+ K K EA ++ + G P+ + YS ++ A + A
Sbjct: 314 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 373
Query: 161 LSVIDEM 167
+ EM
Sbjct: 374 QKTLQEM 380
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLMSGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H N A+ + ++++ GF+P
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSP 274
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + +EM++ G P+ T
Sbjct: 214 NGLCKESKMDEANELFNEMLDNGLVPNGVT 243
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V +N VI GC L RA + +E +GS G PD+H+Y+ L++ KL + A
Sbjct: 309 PEVNVVMLNTVIRGCLTEGKLARATELYEMMGSK-GCPPDVHTYSILMHGLCKLGRFGSA 367
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
R+ + + G PN ++YS L+ + N A +++D+M+ GF+
Sbjct: 368 VRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFS 415
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN LI K+ T A + E L + V P+ ++Y++L+ H R A
Sbjct: 588 GLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDA 647
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++D+ ++ G P++ T + + VR+
Sbjct: 648 AMLLDKAISGGIVPNERTWGMMVQNFVRQ 676
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ SYN LI A K + + E +V+ G+KPN SY++L++ + A
Sbjct: 518 GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDA 577
Query: 161 LSVIDEMVNAGFAP 174
L + EM+N G P
Sbjct: 578 LELSKEMLNQGLTP 591
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+A + + + S G PDI +YN +IY EA +F +L+ GV N ++Y+
Sbjct: 434 LDQATRLVQEMKSQ-GCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYN 492
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
L+ A L N + L + EM+ G
Sbjct: 493 TLIHALLRNGRWQEGLRLASEMLLHG 518
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 80 CAN-IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C N +WD RA + + F + + YN +IYA K K +A+R+ + + S G K
Sbjct: 394 CRNGMWDDARAMLD-QMLAKGFSM--NSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK 450
Query: 139 PNAMSYSLLVDAHLTNRD 156
P+ +Y+ ++ HL N D
Sbjct: 451 PDICTYNTMI-YHLCNND 467
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFE 130
A N V+ C DLD A +G S G P D SYN +I + K +A +VF+
Sbjct: 159 AWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFD 218
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+V +GV PN ++Y+ ++D H+ D +A + D+M++ G P+
Sbjct: 219 EMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPN 263
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I C N D D+A + + + + +G+ P + +Y+ L+ A + + ++
Sbjct: 579 VVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTYHTLVSALASAGRVHDMECLY 637
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ ++ V+P++ Y ++VDA++ + S+ EM G A
Sbjct: 638 QQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ S+ +++ AF K K EA + + ++ V PNA Y+ ++DA++ + D + A
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528
Query: 161 LSVIDEMVNAGFAPS 175
++++M N+G + S
Sbjct: 529 FLLVEKMKNSGVSAS 543
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + DL A+ FE + S + PD +YNALI KL+ +A + +
Sbjct: 373 NTLINGYCQVRDLRGAFCIFEQMKSRH-IRPDHITYNALINGLCKLEMVTKAEDLVMEME 431
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
GV P+ +++ L+DA+ T + +V+ +M G
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 67 YKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
YK VA N +I D ++A+ E + +S G++ I +YN L+ + +
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNS-GVSASIVTYNLLLKGLCRSSQI 560
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA + L + G++P+ +SY+ ++ A D AL ++ EM G P+ T
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 616
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 70 VAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ A C IL G + +A Q E + + GL P YN LI + +++ A
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT-GLVPTTVIYNTLINGYCQVRDLRGAFC 390
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+FE + S ++P+ ++Y+ L++ A ++ EM +G PS ET
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVET 441
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G + + V + G+K + +S+ +V A N A
Sbjct: 434 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 493
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M+ AP+ + +
Sbjct: 494 VAILDDMIYKDVAPNAQVYNSI 515
>gi|405123932|gb|AFR98695.1| hypothetical protein CNAG_06456 [Cryptococcus neoformans var.
grubii H99]
Length = 551
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 5/192 (2%)
Query: 1 MGDLQRAFITLNEFETAYGD-SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+ L AF E A+ S I + +S+ P+V K E +D Y+ LE+
Sbjct: 301 LAPLLEAFCNAGEVPNAFHVLSTIRSTGLTPTLSSIQPIVNVL--KSAEVIDQAYYTLED 358
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ ++ + A+N V+ I DL RA T A+ FG+TP+I +YN ++
Sbjct: 359 MHKSGQAV-DIVALNAVVAASGAIGDLQRARATQSAI-PEFGMTPNIDTYNLVLQCCVVT 416
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + + ++PNA +Y L+ LT + A +++M GF P
Sbjct: 417 THRALGDTLLSEMATQNIQPNATTYDYLIHLCLTQPSYEDAFYYLEKMKADGFKPGYAVY 476
Query: 180 KKVRRRCVREMD 191
+ ++CV+ D
Sbjct: 477 ASLVKKCVKMGD 488
>gi|449442429|ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
mitochondrial-like [Cucumis sativus]
gi|449477884|ref|XP_004155152.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
mitochondrial-like [Cucumis sativus]
Length = 479
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
AE P AA N VI G + DL+ A + + + S GL PD++SY A+I + K +
Sbjct: 305 AEGPPPGNAAFNAVICGYSKAGDLEEAMELIKLM-ESRGLKPDVYSYTAVISGYAKGGQM 363
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK- 181
EA V + K + ++Y L+ H + +AL ++ EM N G P+ + K
Sbjct: 364 KEAYEVLDEAKKKHAKLSHITYHTLIRNHCKLEEYDSALKLLSEMKNFGVQPNVDEYNKL 423
Query: 182 VRRRCVREMDEESNDRVEALAKKFDIRMNTENR 214
+R C++ +D +++R+ K+ + +N R
Sbjct: 424 IRSLCLKAVDWRTSERLFEEMKENGLHLNGITR 456
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E SP Y V+ +C+R G +E L ++ Q+ R E + N ++ CA
Sbjct: 209 KERVSPSILTYNTVINSCARGGLDWEELLGLFAQM----RHEGIQADIVTYNTLLSACAR 264
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A F + G+ PDI +Y+ L+ FGKL + + S + + + S G P+
Sbjct: 265 RGLGDEAEMVFRTMNEG-GILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDIT 323
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
SY++L++AH + K A+ V +M AG P+ T
Sbjct: 324 SYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAAT 359
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + +F+ + S GV P+ S+
Sbjct: 125 DWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSF 184
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++A+ N K++L ++D M +PS T V C R
Sbjct: 185 TALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCAR 228
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E I + + L+ AC+R+G + F+ N P + + ++ +
Sbjct: 246 EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILP---DITTYSYLVETFGKLNR 302
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L++ + + + S G PDI SYN L+ A + EA VF + G PNA +YS
Sbjct: 303 LEKVSELLKEMESG-GSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYS 361
Query: 146 LLVDAH 151
+L++ +
Sbjct: 362 ILLNLY 367
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L + E P ++ + +I G + A+ F+ + G+ P+ H+Y +LIY+
Sbjct: 703 EMLEKDEVP-PTLVSYTILIDGLGKAGRVSEAFSQFQEMIDR-GIIPECHTYTSLIYSLA 760
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K + EA ++ E +V LGV P+ +YS L+ + + A V EM+ G AP++
Sbjct: 761 KAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEV 820
Query: 178 TLKKVRR 184
T K +RR
Sbjct: 821 TYKVLRR 827
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+ I +++ A + E + S G+ PD +YN+L+ + KL++ +A V++ +V+ G+KPN
Sbjct: 619 SKIGNVEAAGEILELMAKS-GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A+++++L+ + A S+ EM+ P
Sbjct: 678 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP 711
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y +I F K+ A + E + GV P+ +Y+ L+D ++ A
Sbjct: 603 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 662
Query: 161 LSVIDEMVNAGFAPSKET 178
V D MV +G P+ T
Sbjct: 663 FGVYDRMVASGIKPNAVT 680
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V A VI G ++ + FE + S P +Y +I K + +A +V
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGS-SCVPTRTTYTVVIDGLCKAQMLPDACKV 455
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
FE +V G P+ ++Y+ L+D A ++D M+ G P+ T V C
Sbjct: 456 FEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 515
Query: 188 REMDEESNDRVEALAKK 204
+M E+ + + + ++
Sbjct: 516 LDMINEAKEVIAQMRER 532
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI +YN L+ F + + +A +F+ L S G KPNA +Y+ ++ + + A +
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356
Query: 164 IDEMVN 169
DE ++
Sbjct: 357 FDEALD 362
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + VI G A+ +D A + FE + ++ G +P++ +Y A+I K + + + F
Sbjct: 363 VISYTTVIKGLADSKRIDEACELFEKLKTA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E + P +Y++++D + A V ++MV G P T
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ AYQ + ++ G PD+ Y +LI + EA VF+ ++ G P+A++Y
Sbjct: 555 EEAYQVLTEM-TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 613
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + +AA +++ M +G P
Sbjct: 614 IIQNFSKIGNVEAAGEILELMAKSGVGP 641
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
Q E + F D+ SY +I K+ EA +FE L + G PN ++Y+ ++D
Sbjct: 348 QRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDG 407
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKET 178
L + L ++M + P++ T
Sbjct: 408 LLKAGRIEDGLKNFEDMSGSSCVPTRTT 435
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G DLD ++ E + ++ G PD +Y LI KL + EA +FE +
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAA-GCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G + +++ L++A + A + EM+ G+ P E
Sbjct: 189 GCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEV 231
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R +P V + +I G + +LD A+Q + + G+ PD +Y++LI + K+
Sbjct: 251 RVKP---DVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKR 306
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+A +FE+++ LGV+P+ +Y+ L+D H + + ALS+ DEM+ G P
Sbjct: 307 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 359
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEI-FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL 60
L RA E A G + DM +P Y +VA C + + V +
Sbjct: 16 LVRALCARGRLEEAVG-VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 74
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
A+P ++ N ++ G ++ A + F+ + GL PD+ SYN L+ + K+
Sbjct: 75 GNAKP---NLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVG 130
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
E+ VF + G+ P+ ++++ L+ A + + A++++ +M G
Sbjct: 131 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 182
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 56/126 (44%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+LD A + + P++ ++N+++ K + A +VF+ +V G+ P+ +SY
Sbjct: 60 ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 119
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ L+ + +L+V EM G P T + + + E + A ++
Sbjct: 120 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 179
Query: 205 FDIRMN 210
+RMN
Sbjct: 180 RGLRMN 185
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 44 RKGFETLDSVYFQLENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KGF LD +E + + +P SV N +I G + +D A + + +
Sbjct: 198 KKGF--LDDALLAVEEMRKCGIQP---SVVCYNALINGYCKLGRMDLARELIREMEAKR- 251
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +Y+ +I + K+ A ++ + ++ GV P+A++YS L+ + A
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 311
Query: 162 SVIDEMVNAGFAPSKET 178
+ + M+ G P + T
Sbjct: 312 ELFENMLQLGVQPDEFT 328
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + YNALI + KL + A + + + VKP+ ++YS ++ + + +A
Sbjct: 216 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 275
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVE 199
+ +M+ G P T + +R + EE ND E
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSL----IRGLCEEKRLNDACE 312
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N ++ G + L + F + + GL PD+ ++ +LI+A K +A +
Sbjct: 116 VVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 174
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G++ N ++++ L+D AL ++EM G PS
Sbjct: 175 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 220
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 103 TPDIHSYNALIYAFGK--------LKKTF-------EASRVFEHLVSLGVKPNAMSYSLL 147
PD Y+AL+ K L K F EA +V++ ++ K + YS+L
Sbjct: 393 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 452
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVR 183
+ H + + ALS +M+ +GF+P S T+ VR
Sbjct: 453 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVR 489
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + + +I G +L++A+Q E V G++PD+ +Y++LI K ++ E +
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++SLG+ P+ ++Y+ L++A+ D AL + DEM+ GF+P
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ L + Y+Q ++ S A + V+ CA + +++A + S+G P +
Sbjct: 118 FQCLKNSYYQCKS---------SSAVFDLVVKSCARVNLINKALSIVN-LAKSYGFMPGV 167
Query: 107 HSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
SYNA++ A + K++ + A +F+ +V GV PN +Y++L+ T + + L
Sbjct: 168 LSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFG 227
Query: 166 EMVNAGFAPSKETLKKV 182
EM G P+ T +
Sbjct: 228 EMERNGCLPNVVTYNTI 244
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +AYQ + + + G TP I +YNALI L + +AS + + ++ G P+ +SYS
Sbjct: 394 LKQAYQIMKEMVEN-GFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ N++ + A + EMV G +P T
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 7 AFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--C-SRKGFETLDSVYFQLENLSRA 63
F E E A+ + + + SP + Y ++ C R+ E D FQ E LS
Sbjct: 457 GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD--LFQ-EMLSLG 513
Query: 64 EPP----YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
PP Y S+ C+ DLD+A + + + G +PDI +YN LI F K
Sbjct: 514 LPPDEVTYTSLINAYCIE------GDLDKALRLHDEMIQK-GFSPDIVTYNVLINGFNKQ 566
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+T EA R+ L+ PN ++Y+ L+D + N + K+AL+++ G
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLID-NCNNLEFKSALALMKGFCMKGL 618
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G N+ + +A A GL+P++ +Y LI + K A + +
Sbjct: 312 NTLINGYCNVGNFHQAL-VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN +Y+ L+D K A ++ EMV GF P+
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 50 LDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
LD+V +++ AE +K +V N +I G +L+ F + +
Sbjct: 174 LDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERN- 232
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN +I A+ KL+K EA ++ + G+ PN +SY+++++ K
Sbjct: 233 GCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKET 292
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EM + P + T
Sbjct: 293 SEILEEMSKRRYVPDRVT 310
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+RA + + + GL P+ +Y LI F + +A ++ + +V G P ++Y
Sbjct: 358 NLNRAMEFLDQMRDR-GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALA 202
+ L++ H + A ++ EM+ GF P + + R E+++ +VE +A
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476
Query: 203 K 203
K
Sbjct: 477 K 477
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PD ++N LI + + +A + +V G+ PN ++Y+ L+++ + A+
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364
Query: 163 VIDEMVNAGFAPSKET 178
+D+M + G P+ T
Sbjct: 365 FLDQMRDRGLHPNGRT 380
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + + +I G +L++A+Q E V G++PD+ +Y++LI K ++ E +
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++SLG+ P+ ++Y+ L++A+ D AL + DEM+ GF+P
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ L + Y+Q ++ S A + V+ CA + +++A + S+G P +
Sbjct: 118 FQCLKNSYYQCKS---------SSAVFDLVVKSCARVNLINKALSIVN-LAKSYGFMPGV 167
Query: 107 HSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
SYNA++ A + K++ + A +F+ +V GV PN +Y++L+ T + + L
Sbjct: 168 LSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFG 227
Query: 166 EMVNAGFAPSKETLKKV 182
EM G P+ T +
Sbjct: 228 EMERNGCLPNVVTYNTI 244
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +AYQ + + + G TP I +YNALI L + +AS + + ++ G P+ +SYS
Sbjct: 394 LKQAYQIMKEMVEN-GFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYS 452
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ N++ + A + EMV G +P T
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 7 AFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--C-SRKGFETLDSVYFQLENLSRA 63
F E E A+ + + + SP + Y ++ C R+ E D FQ E LS
Sbjct: 457 GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD--LFQ-EMLSLG 513
Query: 64 EPP----YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
PP Y S+ C+ DLD+A + + + G +PDI +YN LI F K
Sbjct: 514 LPPDEVTYTSLINAYCIE------GDLDKALRLHDEMIQK-GFSPDIVTYNVLINGFNKQ 566
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+T EA R+ L+ PN ++Y+ L+D + N + K+AL+++ G
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLID-NCNNLEFKSALALMKGFCMKGL 618
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G N+ + +A A GL+P++ +Y LI + K A + +
Sbjct: 312 NTLINGYCNVGNFHQAL-VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR 370
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN +Y+ L+D K A ++ EMV GF P+
Sbjct: 371 DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN +I A+ KL+K EA ++ + G+ PN +SY+++++ K
Sbjct: 233 GCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKET 292
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EM + P + T
Sbjct: 293 SEILEEMSKRRYVPDRVT 310
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+RA + + + GL P+ +Y LI F + +A ++ + +V G P ++Y
Sbjct: 358 NLNRAMEFLDQMRDR-GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALA 202
+ L++ H + A ++ EM+ GF P + + R E+++ +VE +A
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476
Query: 203 K 203
K
Sbjct: 477 K 477
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PD ++N LI + + +A + +V G+ PN ++Y+ L+++ + A+
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364
Query: 163 VIDEMVNAGFAPSKET 178
+D+M + G P+ T
Sbjct: 365 FLDQMRDRGLHPNGRT 380
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
RA + + +GLTPD HSYNALI A GK +A VFE + + G++P ++++ L
Sbjct: 546 RALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNAL 605
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+ + D A+ ++D M+ G P T+ + C R D
Sbjct: 606 IYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQD 649
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Query: 4 LQRAFITLNEFETAYG---------DSIIDMEEIF--SPFTSLY-PLVVACSRKGFETLD 51
+Q IT N +A G +++ DM EI+ +P Y L+ AC + G
Sbjct: 524 IQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSG--DFT 581
Query: 52 SVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
Y E + R + N +I G + DL +++ + + GL PD ++ N
Sbjct: 582 KAYEVFEEM-RTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQE-GLNPDAYTMNT 639
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI A + + A V E LGV P+ ++++ +DA + ++ EM + G
Sbjct: 640 LISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRG 699
Query: 172 FAPSKETLKKVRRRCVR 188
+PSK TL + C R
Sbjct: 700 ISPSKVTLNTIVGCCGR 716
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++RA FE + + + PD+ ++NALI FGKL++ +A +++ + L ++P+ ++++
Sbjct: 474 VERALAIFEEM-THERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFN 532
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNA-GFAPSKETLKKVRRRCVREMD 191
L+ A ++ AL + +M G P + + + C + D
Sbjct: 533 ALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGD 579
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 56 QLENLSRAEPPYKSVAAI--NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
+++N++ Y +V I C C I RA + + G PD+ +Y LI
Sbjct: 375 RIDNIAPNTVTYNAVIKIVSRCKRNDCGGI---TRAMSLLREMATK-GCIPDVVTYATLI 430
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
AF K + A ++F+ + VKPN YS L+ A + AL++ +EM +
Sbjct: 431 DAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIV 490
Query: 174 P 174
P
Sbjct: 491 P 491
>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 892
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+NC C + D+++AY A G+ P+ H YN LI FG + A V +
Sbjct: 479 VNC----CVKLGDMEQAYNLL-AEMKQVGIQPNAHCYNPLIMGFGSQARLDRALEVLREM 533
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVR- 188
+S GV+P++ +YS+L+ A R++ A+ + +EM+ G P+ + V RC +
Sbjct: 534 LSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQRGVQPNAGIYSAMASVFARCGKL 593
Query: 189 ----EMDEESNDRVEALAKK 204
EM +E R E + K
Sbjct: 594 ERSIEMVKEIERRGEVVGTK 613
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 24 DMEE---IFSPFTSLYPLVVACSRKG-----FETLDSVYFQLENLSRAEPPYKSVAAINC 75
D+EE I +P L+ +C + G + LD + + LS PY A N
Sbjct: 391 DVEEQCRINAPPEVFNILIDSCCKHGHVSWGLDLLDEMQQRGTKLS----PY----AFNP 442
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
I A + A++ A+G G+ P + +Y+ L+ KL +A + + +
Sbjct: 443 FICDFARWGMYEEAFEMKAAMGR-LGVQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQV 501
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++PNA Y+ L+ + AL V+ EM++AG P T
Sbjct: 502 GIQPNAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQPDSYT 544
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFE 130
A N + C DLD A +G S G P D SYN +I + K +A +VF+
Sbjct: 160 AWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFD 219
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V GV PN ++Y+ ++D H+ D +A + D+M+ G P+ T
Sbjct: 220 EMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVT 267
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ A N +I G + DL A+ FE + S + PD +YNALI K++ EA +
Sbjct: 369 TTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH-IRPDHITYNALINGLCKMEMITEAEDL 427
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ GV P+ +++ L+DA+ + +V+ +M + G
Sbjct: 428 VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G+ + + V + G+K N +S+ +V A N A
Sbjct: 435 GVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEA 494
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M++ P+ + +
Sbjct: 495 VAILDDMIHKDVVPNAQVYNSI 516
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 70 VAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ A C IL G + +A Q E + + GL P YN LI + +++ A
Sbjct: 333 IGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT-GLVPTTAIYNTLINGYCQVRDLQGAFS 391
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+FE + S ++P+ ++Y+ L++ A ++ EM +G PS ET
Sbjct: 392 IFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVET 442
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I C N D DRA + + + + + P + +Y+ L+ A G + + ++
Sbjct: 580 VVSYNTIISACCNKGDTDRALELLQEM-HKYDIRPTLRTYHPLLSALGSAGRVHDMECLY 638
Query: 130 EHLVSLGVKPNAMSYS 145
+H+V V+P++ Y
Sbjct: 639 QHMVHKNVEPSSSIYG 654
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A+ E + SS G++ I +YN L+ K + EA + +L + G++P+ +SY+
Sbjct: 527 EQAFLLVEKMKSS-GVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNT 585
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ A D AL ++ EM P+ T
Sbjct: 586 IISACCNKGDTDRALELLQEMHKYDIRPTLRT 617
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ S+ +++ AF K K EA + + ++ V PNA Y+ ++DA++ + + A
Sbjct: 470 GIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQA 529
Query: 161 LSVIDEMVNAGFAPS 175
++++M ++G + S
Sbjct: 530 FLLVEKMKSSGVSAS 544
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ YN++I A+ + T +A + E + S GV + +Y+LL+ N A
Sbjct: 506 VVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAE 565
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
+I + N G P + + C + D + + K+DIR
Sbjct: 566 ELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIR 612
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 11/170 (6%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL A L + G D FS Y +V+A + + D++ E +
Sbjct: 172 GDLDEALAMLRRMGRSEGAPPPDA---FS-----YNVVIAGLWRSGKGSDALKVFDEMVD 223
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R P + N +I G DL+ ++ + + G P++ +YN L+ + +
Sbjct: 224 RGVAPNQ--ITYNTMIDGHVKGGDLEAGFRLRDQMLQD-GRKPNVVTYNVLLSGLCRAGR 280
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
E + + + S + P+ +YS+L D D + LS+ E + G
Sbjct: 281 MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKG 330
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R +P V + +I G + +LD A+Q + + G+ PD +Y++LI + K+
Sbjct: 393 RVKP---DVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKR 448
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+A +FE+++ LGV+P+ +Y+ L+D H + + ALS+ DEM+ G P
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEI-FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL 60
L RA E A G + DM +P Y +VA C + + V +
Sbjct: 158 LVRALCARGRLEEAVG-VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
A+P ++ N ++ G ++ A + F+ + GL PD+ SYN L+ + K+
Sbjct: 217 GNAKP---NLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVG 272
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
E+ VF + G+ P+ ++++ L+ A + + A++++ +M G
Sbjct: 273 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YNA++ A A R ++ GV PN +Y++LV A + A
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ V+ +M AG AP+ T + R + + +RV +L ++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 56/126 (44%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+LD A + + P++ ++N+++ K + A +VF+ +V G+ P+ +SY
Sbjct: 202 ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 261
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ L+ + +L+V EM G P T + + + E + A ++
Sbjct: 262 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 321
Query: 205 FDIRMN 210
+RMN
Sbjct: 322 RGLRMN 327
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 44 RKGFETLDSVYFQLENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KGF LD +E + + +P SV N +I G + +D A + + +
Sbjct: 340 KKGF--LDDALLAVEEMRKCGIQP---SVVCYNALINGYCKLGRMDLARELIREMEAKR- 393
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +Y+ +I + K+ A ++ + ++ GV P+A++YS L+ + A
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453
Query: 162 SVIDEMVNAGFAPSKET 178
+ + M+ G P + T
Sbjct: 454 ELFENMLQLGVQPDEFT 470
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + YNALI + KL + A + + + VKP+ ++YS ++ + + +A
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVE 199
+ +M+ G P T + +R + EE ND E
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSL----IRGLCEEKRLNDACE 454
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N ++ G + L + F + + GL PD+ ++ +LI+A K +A +
Sbjct: 258 VVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G++ N ++++ L+D AL ++EM G PS
Sbjct: 317 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 103 TPDIHSYNALIYAFGK--------LKKTF-------EASRVFEHLVSLGVKPNAMSYSLL 147
PD Y+AL+ K L K F EA +V++ ++ K + YS+L
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVR 183
+ H + + ALS +M+ +GF+P S T+ VR
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVR 631
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R +P V + +I G + +LD A+Q + + G+ PD +Y++LI + K+
Sbjct: 393 RVKP---DVVTYSTIISGYCKVGNLDSAFQLNQKMLKK-GVLPDAITYSSLIRGLCEEKR 448
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+A +FE+++ LGV+P+ +Y+ L+D H + + ALS+ DEM+ G P
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YNA++ A A R ++ GV PN +Y++LV A + A
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ V+ +M AG AP+ T + R + + +RV +L ++
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE 215
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEI-FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL 60
L RA E A G + DM +P Y +VA C + + V +
Sbjct: 158 LVRALCARGRLEEAVG-VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
A+P ++ N ++ G ++ A + F+ + GL PD+ SYN L+ + K+
Sbjct: 217 GNAKP---NLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVG 272
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
E+ VF + G+ P+ ++++ L+ A + + A++++ +M G
Sbjct: 273 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 56/126 (44%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+LD A + + P++ ++N+++ K + A +VF+ +V G+ P+ +SY
Sbjct: 202 ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 261
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ L+ + +L+V EM G P T + + + E + A ++
Sbjct: 262 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 321
Query: 205 FDIRMN 210
+RMN
Sbjct: 322 RGLRMN 327
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 44 RKGFETLDSVYFQLENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KGF LD +E + + +P SV N +I G + +D A + + +
Sbjct: 340 KKGF--LDDALLAVEEMRKCGIQP---SVVCYNALINGYCKLGRMDLARELIREMEAKR- 393
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +Y+ +I + K+ A ++ + ++ GV P+A++YS L+ + A
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453
Query: 162 SVIDEMVNAGFAPSKET 178
+ + M+ G P + T
Sbjct: 454 ELFENMLQLGVQPDEFT 470
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + YNALI + KL + A + + + VKP+ ++YS ++ + + +A
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVE 199
+ +M+ G P T + +R + EE ND E
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSL----IRGLCEEKRLNDACE 454
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N ++ G + L + F + + GL PD+ ++ +LI+A K +A +
Sbjct: 258 VVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G++ N ++++ L+D AL ++EM G PS
Sbjct: 317 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 103 TPDIHSYNALIYAFGK--------LKKTF-------EASRVFEHLVSLGVKPNAMSYSLL 147
PD Y+AL+ K L K F EA +V++ ++ K + YS+L
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEAL 201
+ H + + ALS +M+ +GF+P S T+ VR M E+++ ++ L
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G+ PD +SYN +IYA+G+ + EASR+
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G+KP+ ++Y++ V ++++N + A+ ++ MV G P++ T +
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 739
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI + EA++VF+ + + G +P+ ++++ L+D + R A
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297
Query: 161 LSVIDEMVNAGFAPS 175
+ VI EM G PS
Sbjct: 298 IEVIQEMERVGCPPS 312
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI + K A ++ +V G KPN +Y+ L+ H
Sbjct: 343 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402
Query: 161 LSVIDEMVNAGFAP 174
++V DE +AGF P
Sbjct: 403 MAVFDEFRSAGFVP 416
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q F+ + +S G PD ++N+L+ +GK ++ EA V + +
Sbjct: 247 NTLISCCRRRALYKEAAQVFDEMKAS-GFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G P+ ++Y+ L+ +++ + + A+++ EM G P
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKP 346
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNALI G K E VF+ S G P+ ++++ L+ N
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEV 437
Query: 161 LSVIDEMVNAGFAPSKET 178
V EM AG+ P ++T
Sbjct: 438 SGVFKEMKKAGYIPERDT 455
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR---DQKAA 160
PD +Y AL+ AF + + +A VF +V GV+P ++Y++++ H+ ++ K
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVL--HVYSKMAVPWKEV 227
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ ++ M G AP + T + C R
Sbjct: 228 VELVASMKEHGVAPDRYTYNTLISCCRR 255
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 411 SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 470
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + M+ AG P T V
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAV 494
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A Q ++ + + G+ PD+ +YNA++ A + + +A ++F + KP+ SYS
Sbjct: 470 DLAMQIYKRMMEA-GIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 528
Query: 147 LVDAHLTNR--DQKAALS 162
L+ A+ + D+ ALS
Sbjct: 529 LLHAYANAKRLDKMKALS 546
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI + A + F + S GL PD+ +YN + ++ EA + ++V
Sbjct: 667 NTVIYAYGRKGQMKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725
Query: 134 SLGVKPNAMSYSLLVDAHLTN 154
+ G KPN +Y+ +V+ + N
Sbjct: 726 TQGCKPNERTYNSIVEGYCRN 746
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILG-CANIWDLDRAYQTFEAV 96
+ +L V+ + +S AE +K + N +I G C N ++DRA+Q + +
Sbjct: 430 YTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVN-GNIDRAFQLLKEM 488
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
++ + PD ++N L+ + + +K EA ++ + + G+KP+ +SY+ L+ + D
Sbjct: 489 DNA-KVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGD 547
Query: 157 QKAALSVIDEMVNAGFAPS 175
K AL V DEM++ GF P+
Sbjct: 548 MKDALEVFDEMLSLGFDPT 566
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N VI G + A + F+ + L PD ++YN+ I K ++ EAS V
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDK-NLKPDCYTYNSFISRLCKERRIEEASGV 309
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ G+ PNA++Y+ L+D D A + DEM+N G S
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVAS 356
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACS--RKGFETLDSVYFQLEN 59
GDL +AF AY D +++ + S FT Y L++ K E + + ++
Sbjct: 336 GDLDKAF--------AYRDEMMNRGIVASVFT--YNLLIHALFLEKRIEEAEDMIKEMRE 385
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
EP V N I G + +A F+ + + P + +Y +LI FGK
Sbjct: 386 -KGVEP---DVVTYNIQINGYCRCGNAKKALSLFDEMVEK-NIRPTVETYTSLIDVFGKR 440
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ EA F+ + G+ P+ + ++ L+D H N + A ++ EM NA P + T
Sbjct: 441 NRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTF 500
Query: 180 KKVRRRCVRE 189
+ + RE
Sbjct: 501 NTLMQGYCRE 510
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI + K +A VF+ ++SLG P ++Y+ L+ + + A
Sbjct: 527 GIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHA 586
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM + G P T
Sbjct: 587 EELLREMQSKGITPDDST 604
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G++ RAF L E + A ++ E F+ Y C + E + +++
Sbjct: 476 GNIDRAFQLLKEMDNA---KVVPDEVTFNTLMQGY-----CRERKVEEAKKLLDEMK--E 525
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R P + N +I G + D+ A + F+ + S G P + +YNALI + K+ +
Sbjct: 526 RGIKP--DHISYNTLISGYSKRGDMKDALEVFDEM-LSLGFDPTLLTYNALIQGYSKIGE 582
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
A + + S G+ P+ +Y +++A TN D
Sbjct: 583 ADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDD 617
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+G+ P++ +YN +I + L+ FE AS++F+ + +KP+ +Y+ + R +
Sbjct: 246 YGVKPNVVTYNTVINGYC-LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIE 304
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A V+ +++ +G P+ T + C + D
Sbjct: 305 EASGVLCKLLESGLVPNAVTYNALIDGCCNKGD 337
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G+ PD +SYN +IYA+G+ + EASR+
Sbjct: 609 SAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRL 667
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G+KP+ ++Y++ V ++++N + A+ ++ MV G P++ T +
Sbjct: 668 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 721
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI + EA++VF+ + + G +P+ ++++ L+D + R A
Sbjct: 220 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 279
Query: 161 LSVIDEMVNAGFAPS 175
+ VI EM G PS
Sbjct: 280 IEVIQEMERVGCPPS 294
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI + K A ++ +V G KPN +Y+ L+ H
Sbjct: 325 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 384
Query: 161 LSVIDEMVNAGFAP 174
++V DE +AGF P
Sbjct: 385 MAVFDEFRSAGFVP 398
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q F+ + +S G PD ++N+L+ +GK ++ EA V + +
Sbjct: 229 NTLISCCRRRALYKEAAQVFDEMKAS-GFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 287
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G P+ ++Y+ L+ +++ + + A+++ EM G P
Sbjct: 288 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKP 328
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNALI G K E VF+ S G P+ ++++ L+ N
Sbjct: 360 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEV 419
Query: 161 LSVIDEMVNAGFAPSKET 178
V EM AG+ P ++T
Sbjct: 420 SGVFKEMKKAGYIPERDT 437
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR---DQKAA 160
PD +Y AL+ AF + + +A VF +V GV+P ++Y++++ H+ ++ K
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVL--HVYSKMAVPWKEV 209
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ ++ M G AP + T + C R
Sbjct: 210 VELVASMKEHGVAPDRYTYNTLISCCRR 237
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 393 SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 452
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + M+ AG P T V
Sbjct: 453 LAMQIYKRMMEAGIYPDVSTYNAV 476
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A Q ++ + + G+ PD+ +YNA++ A + + +A ++F + KP+ SYS
Sbjct: 452 DLAMQIYKRMMEA-GIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 510
Query: 147 LVDAHLTNR--DQKAALS 162
L+ A+ + D+ ALS
Sbjct: 511 LLHAYANAKRLDKMKALS 528
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI + A + F + S GL PD+ +YN + ++ EA + ++V
Sbjct: 649 NTVIYAYGRKGQMKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 707
Query: 134 SLGVKPNAMSYSLLVDAHLTN 154
+ G KPN +Y+ +V+ + N
Sbjct: 708 TQGCKPNERTYNSIVEGYCRN 728
>gi|326495786|dbj|BAJ85989.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A TF+ + GL PD+ SY AL+ A K + EA RV+EH+
Sbjct: 393 NAVLLACSRAAESSAAVDTFKRM-IDRGLKPDVVSYGALLSALEKGRLYDEALRVWEHMR 451
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GV PN +Y++L + D A +V+ +M++A P+ T + C R
Sbjct: 452 KVGVDPNLHAYTILASIYAGKGDHGKADAVLRDMLSAKIEPTVVTFNAIITACWR 506
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A + ++ A F+ ++ G+KP+ +SY L+ A R A
Sbjct: 384 GLEPGSREWNAVLLACSRAAESSAAVDTFKRMIDRGLKPDVVSYGALLSALEKGRLYDEA 443
Query: 161 LSVIDEMVNAGFAPS 175
L V + M G P+
Sbjct: 444 LRVWEHMRKVGVDPN 458
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS-------YSLLVDAHLTNRDQKAALS 162
N LI+ G+ KK + A ++E L+ G KPN +S +++L++A + A+S
Sbjct: 316 NHLIWLMGRAKKWWAALEIYEDLLEKGPKPNNLSQELIRSHFNVLLNAAKRRGIWRWAVS 375
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
++++M G P V C R ES+ V+ + D
Sbjct: 376 LLEKMQEKGLEPGSREWNAVLLACSRAA--ESSAAVDTFKRMID 417
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ N + R Q A + G++P+I ++N L+ + + K E RV++ +
Sbjct: 117 NCLLGAVKNSGEFGR-IQDVLADMEAQGISPNIVTFNTLMSVYVEQGKIEEVLRVYDDIE 175
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
G+ P A +YS ++ A+ + D AAL
Sbjct: 176 GRGLVPTAATYSTVMSAYKSAGDGFAAL 203
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L + E P ++ + +I G + A+ F+ + G+ P+ H+Y +LIY+
Sbjct: 448 EMLEKEEVP-PTLVSYTILIDGLGKAGRVSEAFLQFQEM-IDRGIIPECHTYTSLIYSLA 505
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K + EA ++ E +V LGV P+ +YS L+ + + A V EM+ G AP++
Sbjct: 506 KAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEV 565
Query: 178 TLKKVRR 184
T K +RR
Sbjct: 566 TYKVLRR 572
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I + I +++ A + E + S G+ PD +YN+L+ + KL++ +A V++ +V+
Sbjct: 359 IIQNFSKIGNVEAAGEILELMAKS-GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS 417
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
G+KPNA+++++L+ + A S+ EM+
Sbjct: 418 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEML 450
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G DLD Y F AV L D+ SY +I K+ EA +FE L +
Sbjct: 82 VIHGYCKAGDLDTGY--FRAVTPKASL--DVISYTTVIKGLADSKRIDEACELFEELKTA 137
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G PN ++Y+ ++D L + L +EM + P++ T
Sbjct: 138 GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAIN--CVILGCANIWDL 86
F P LY V+ K + LD+ YF RA P S+ I+ VI G A+ +
Sbjct: 72 FRPDVFLYTSVIHGYCKAGD-LDTGYF------RAVTPKASLDVISYTTVIKGLADSKRI 124
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + FE + ++ G +P++ +Y A+I K + + + FE + P +Y++
Sbjct: 125 DEACELFEELKTA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTV 183
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D + A V ++MV G P T
Sbjct: 184 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 215
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y +I F K+ A + E + GV P+ +Y+ L+D ++ A
Sbjct: 348 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 407
Query: 161 LSVIDEMVNAGFAPSKETL 179
V D MV +G P+ T
Sbjct: 408 FGVYDRMVASGIKPNAVTF 426
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V A VI G ++ + FE + S P +Y +I K + +A +V
Sbjct: 142 NVVAYTAVIDGLLKAGRIEDGLKNFEEMSGS-SCVPTRTTYTVVIDGLCKAQMLPDACKV 200
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
FE +V G P+ ++Y+ L+D A ++D M+ G P+ T V C
Sbjct: 201 FEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 260
Query: 188 REMDEESNDRVEALAKK 204
+M E+ + + + ++
Sbjct: 261 LDMINEAKEVIAQMRER 277
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ AYQ + ++ G PD+ Y +LI + EA VF+ ++ G P+A++Y
Sbjct: 300 EEAYQVLTEM-TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 358
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + +AA +++ M +G P
Sbjct: 359 IIQNFSKIGNVEAAGEILELMAKSGVGP 386
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G+ PD +SYN +IYA+G+ + EASR+
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G+KP+ ++Y++ V ++++N + A+ ++ MV G P++ T +
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 739
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI + EA++VF+ + + G +P+ ++++ L+D + R A
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297
Query: 161 LSVIDEMVNAGFAPS 175
+ VI EM G PS
Sbjct: 298 IEVIQEMERVGCPPS 312
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI + K A ++ +V G KPN +Y+ L+ H
Sbjct: 343 GIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402
Query: 161 LSVIDEMVNAGFAP 174
++V DE+ +AGF P
Sbjct: 403 MAVFDELRSAGFVP 416
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q F+ + +S G PD ++N+L+ +GK ++ EA V + +
Sbjct: 247 NTLISCCRRRALYKEAAQVFDEMKAS-GFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G P+ ++Y+ L+ +++ + + A+++ EM G P
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKP 346
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNALI G K E VF+ L S G P+ ++++ L+ N
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEV 437
Query: 161 LSVIDEMVNAGFAPSKET 178
V EM AG+ P ++T
Sbjct: 438 SGVFKEMKKAGYIPERDT 455
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR---DQKAA 160
PD +Y AL+ AF + + +A VF +V GV+P ++Y++++ H+ ++ K
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVL--HVYSKMAVPWKEV 227
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ ++ M G AP + T + C R
Sbjct: 228 VELVASMKEHGVAPDRYTYNTLISCCRR 255
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 411 SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 470
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + M+ AG P T V
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAV 494
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A Q ++ + + G+ PD+ +YNA++ A + + +A ++F + KP+ SYS
Sbjct: 470 DLAMQIYKRMMEA-GIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 528
Query: 147 LVDAHLTNR--DQKAALS 162
L+ A+ + D+ ALS
Sbjct: 529 LLHAYANAKRLDKMKALS 546
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI + A + F + S GL PD+ +YN + ++ EA + ++V
Sbjct: 667 NTVIYAYGRKGQMKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725
Query: 134 SLGVKPNAMSYSLLVDAHLTN 154
+ G KPN +Y+ +V+ + N
Sbjct: 726 TQGCKPNERTYNSIVEGYCRN 746
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ ++ G+ PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAT-GVQPDVYTYSVLINGLCKESKMDEANEM 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++ G+ PN ++++ L+D H N A+ + +M++ GF P T + R
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288
Query: 189 EMD-EESNDRVEALAKK 204
D ++ D VE + K
Sbjct: 289 RGDLGQARDLVEEMIMK 305
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSV-YFQL------ENLSRAEPPYKSVAAINCVIL 78
+I+ PF + RK E L + YF+L E L PP S+ N ++
Sbjct: 95 HKIWVPFDT--------CRKVLEHLMKLRYFRLVWGFYKEILECGYPP--SLYFFNILMH 144
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
++ A F+A+ + + L P + S+N L+ + +L E R+ + + GV+
Sbjct: 145 RFCKEGEMRLAQMVFDAI-TKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQ 203
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ +YS+L++ A +++EM++ G P+ T
Sbjct: 204 PDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVT 243
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N +D A + ++ + S G PD+ +YN LIY + +A + E ++ G+KP
Sbjct: 252 CKN-GKVDLAMEIYKQMLSQ-GFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKP 309
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+ ++Y+ L+D D + + M+
Sbjct: 310 DKITYTTLIDGSCKEGDLEITFELRKRMI 338
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMNDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F ++ G+ PN ++++ L+D H A+ EM+ GF+P T + +
Sbjct: 229 FGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +D A +T++ + G +PD+ +YN LIY K +A + + +
Sbjct: 247 LIDGHCKTGSIDLAMETYKEMLRQ-GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMK 305
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
G+KP+ ++Y+ L+D D + AL M+
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETALYYRKRMI 338
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +GL P + S+N L+ + +L E R+ + + GV+P+ +YS+L++
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + EM+ G P+ T
Sbjct: 223 NDANELFGEMIGNGLVPNGVT 243
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP+ +Y+++++ D K ++ EM
Sbjct: 348 AYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEM 407
Query: 168 VNAGFAP 174
G P
Sbjct: 408 QRDGHVP 414
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N VI G N +D+AY F G++PD+ +YN +I K ++ A VF
Sbjct: 193 VVSYNIVINGFFNEGQVDKAYSLF----LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVF 248
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +V GVKPN ++Y+ ++D ++ A V +MV+ G PS T
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVT 297
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +N ++ K + EA R+ + +V +G+KP+ +SY+ L+D H A
Sbjct: 605 GIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEA 664
Query: 161 LSVIDEMVNAGFAPS 175
+ ++D MV+AG P+
Sbjct: 665 VKLLDGMVSAGLKPN 679
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +DRA F+ + G+ PD +YN +I K + +A VF+ ++
Sbjct: 299 NTIIDGLCKAQAVDRAEGVFQQMIDR-GVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI 357
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GVKP+ ++Y++++D + A V +M++ G P+ T
Sbjct: 358 DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G ++DRA F+ + G+ P+ +YN +I K ++ A VF
Sbjct: 225 VVTYNTIIDGLCKAQEVDRAEDVFQQMVEK-GVKPNNVTYNTIIDGLCKAQEVDMAEGVF 283
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +V GVKP+ ++Y+ ++D + A V +M++ G P T
Sbjct: 284 QKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVT 332
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL PD+ SYN LI + EA ++ + +VS G+KPN +SY+ L+ +
Sbjct: 639 MGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDN 698
Query: 160 ALSVIDEMVNAGFAPSKET 178
A + EM+ G P ET
Sbjct: 699 AYCLFREMLRKGVTPGVET 717
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++D A F+ + G+ P +YN +I K + A VF+ ++
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDK-GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GVKP+ ++Y+ ++D + A V +M++ G P T
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT 367
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + + + V+ Q+ + R P N +I G +D+A F+ + G
Sbjct: 306 CKAQAVDRAEGVFQQM--IDRGVKP--DHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK-G 360
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD +Y +I K + A VF+ ++ GVKPN +Y+ L+ +L+ + +
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420
Query: 162 SVIDEMVNAGFAP 174
I EM P
Sbjct: 421 QRIKEMSAHDLEP 433
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + + + V+ Q+ + + P I +I G +DRA F+ + G
Sbjct: 341 CKAQAIDKAEGVFQQM--IDKGVKPDNLTYTI--IIDGLCKAQSVDRAEGVFQQMIDK-G 395
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ +YN LI+ + + E + + + + ++P+ +Y LL+D N A
Sbjct: 396 VKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEAR 455
Query: 162 SVIDEMVNAGFAPS 175
S+ D M+ G PS
Sbjct: 456 SLFDSMIRKGIKPS 469
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G + + Q + + S+ L PD+ +Y L+ K K EA +F+ ++
Sbjct: 404 NCLIHGYLSTGQWEEVVQRIKEM-SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALS----VIDEMVNAGFAPSKETLKKV 182
G+KP+ Y +++ + +K ALS +++ MV G +P+ V
Sbjct: 463 RKGIKPSVTIYGIMLHGY----GKKGALSEMHDLLNLMVANGISPNHRIFNTV 511
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P++ +Y LI A KL + +A F +++ GV PN + ++ LV T +
Sbjct: 535 GLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594
Query: 161 LSVIDEMVNAGFAP 174
+ EM+N G P
Sbjct: 595 EELFLEMLNQGIRP 608
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ +N +I A+ K E +F + G+ PN ++Y L+DA A
Sbjct: 500 GISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDA 559
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M+N G P+
Sbjct: 560 VLQFNQMINEGVTPN 574
>gi|242206927|ref|XP_002469318.1| predicted protein [Postia placenta Mad-698-R]
gi|220731573|gb|EED85416.1| predicted protein [Postia placenta Mad-698-R]
Length = 520
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 2/183 (1%)
Query: 21 SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80
+I I + +P+ A SR +T+D + LE + V A+N VI
Sbjct: 275 GVIRSRNIIPVTETTFPIFTAISRD-TDTVDEAWGHLEAIRDEGKEAVDVTALNVVIQAS 333
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
I DL RA T++A G +TP++ +YN L+ + R+ + +KP+
Sbjct: 334 VAIGDLQRAVGTYKAAGD-LNVTPNVDTYNLLLAGCIAAQHRQLGDRLLSEMKDAKIKPD 392
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200
+Y L+ LT + + A ++EM F P + + R+CV D S +E
Sbjct: 393 VRTYERLIVLCLTQTNYEDAFFYLEEMKALRFMPPLAVYEAIIRKCVLTGDTRSKIAIEE 452
Query: 201 LAK 203
+ +
Sbjct: 453 MTE 455
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD+ ++ A+ +S G+ PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDQGFKLKNAMHAS-GVQPDVYTYSVLINGLCKESKMNEANDL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H N +A+ +M++ F P
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLP 274
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N +D A +T++ + S L PD+ +YN LIY K +A + + + G+KP
Sbjct: 252 CKN-GKVDSAMETYKQMLSQCFL-PDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKP 309
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+ ++Y+ L+D + D +A + + MV
Sbjct: 310 DKITYTTLIDGNCKEGDLDSAFELRETMV 338
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DLD A++ E + D+ +Y ALI + + +A ++ ++S+G+KP+ +Y
Sbjct: 326 DLDSAFELRETMVKESIRLDDV-AYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTY 384
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+++++ D K A ++ EM G P
Sbjct: 385 TMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
IW A F+++ + +GL P + S+N L+ + +L + ++ + + GV+P+
Sbjct: 150 GEIW---IAQSVFDSI-TKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPD 205
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+YS+L++ A + +EM++ G P+ T
Sbjct: 206 VYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVT 243
>gi|392570261|gb|EIW63434.1| hypothetical protein TRAVEDRAFT_112660 [Trametes versicolor
FP-101664 SS1]
Length = 440
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 12/200 (6%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL+ A I L+ + I E P L K E +D+ + QLE L
Sbjct: 220 GDLKEALIMLDFMRKS---DITPSLETAEPILQLI-------NKDTEAVDNAWGQLEMLH 269
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P V A+N VI + DL RA T++A ++ G+TP+I ++N L+ +
Sbjct: 270 EEGSPV-DVVALNVVIQAAVALNDLQRAIGTYKA-SAALGVTPNIDTFNLLLLGCVVARH 327
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
R+ L + G++P+ +Y +V LT + A ++EM + G P + +
Sbjct: 328 RELGDRLLADLKAAGIRPDETTYERMVRLCLTQSMYEDAFFYLEEMKSLGMVPPRTVYEA 387
Query: 182 VRRRCVREMDEESNDRVEAL 201
V R+ V D VE L
Sbjct: 388 VIRKLVSVGDVRYKLAVEEL 407
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++DRA+ + +S GL PD+ +YN ++ F + + EA + ++
Sbjct: 643 NTLINGFIKEENMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 701
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV P+ +Y+ L++ H+T + K A V DEM+ GF P
Sbjct: 702 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 24 DMEE--IFSPFTSLYPLVVACSRKG-----FETLDSVYFQLENLSRAEPPYKSVAAINCV 76
DMEE +F + L+ A R+G FE +DS+ + P V N +
Sbjct: 279 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMS------GKGLKP--CVFTYNAI 330
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I G RA + + G++PD +YN L+ + +A R+F+ + S G
Sbjct: 331 INGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 389
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V P+ +S+S L+ N AL +M NAG AP
Sbjct: 390 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 427
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI A+ + EA + + + G+KP +Y+ +++ A
Sbjct: 284 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 343
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE---MDEE 193
V+DEM+ G +P T + C R MD E
Sbjct: 344 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 379
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A FE + L PD+ +YN LI F K + + + ++ ++S + PN +SY
Sbjct: 514 NMNKAVTLFEMMIQR-NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 572
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+L++ + A + DEMV GF
Sbjct: 573 GILINGYCNMGCVSEAFRLWDEMVEKGF 600
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A N +++ C ++ A + F+ + S G+ PD+ S++ALI K +A + F
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFR 418
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ + G+ P+ + Y++L+ N AL V DEM+ G
Sbjct: 419 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++ LI + K +A +FE ++ +KP+ ++Y+ L+D + +
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 553
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ P+
Sbjct: 554 NELWNDMISRRIYPN 568
>gi|147807508|emb|CAN72882.1| hypothetical protein VITISV_043674 [Vitis vinifera]
Length = 256
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 6 RAFITLNEFETAYGDSIIDMEE-IFSPFTSLYPLVVACSRKGFETLDS 52
RAF TL+EFETAY +S + +E IFSPFTSL+P V+A S+KGFETLD+
Sbjct: 142 RAFSTLHEFETAYRNSPKEADEDIFSPFTSLHPSVMASSKKGFETLDT 189
>gi|242223202|ref|XP_002477262.1| predicted protein [Postia placenta Mad-698-R]
gi|220723310|gb|EED77540.1| predicted protein [Postia placenta Mad-698-R]
Length = 380
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 2/183 (1%)
Query: 21 SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80
+I I + +P+ A SR +T+D + LE + V A+N VI
Sbjct: 151 GVIRSRNIIPVTETTFPIFTAISRD-TDTVDEAWGHLEAIRDEGKEAVDVTALNVVIQAS 209
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
I DL RA T++A G +TP++ +YN L+ + R+ + +KP+
Sbjct: 210 VAIGDLQRAVGTYKAAGD-LNVTPNVDTYNLLLAGCIAAQHRQLGDRLLSEMKDAKIKPD 268
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200
+Y L+ LT + + A ++EM F P + + R+CV D S +E
Sbjct: 269 VRTYERLIVLCLTQTNYEDAFFYLEEMKALRFMPPLAVYEAIIRKCVLTGDTRSKIAIEE 328
Query: 201 LAK 203
+ +
Sbjct: 329 MTE 331
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
F P + L++ C + E D+ E L P + N +I C + D DR
Sbjct: 491 FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE--ITYNILIRSCCSTGDTDR 548
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+ + F + + GL+PD+++YNA I +F K++K +A + + ++ +G+KP+ +YS L+
Sbjct: 549 SVKLFAKMKEN-GLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLI 607
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + + A + + G P T +R V E+D
Sbjct: 608 KALSESGRESEAREMFSSIERHGCVPDSYT-----KRLVEELD 645
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI LD AY F+ + S G PD +YN LI+ K EA R+ + +
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSD-GCKPDRFTYNILIHGVCKKGVVDEAIRLVKQME 242
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
G +PN +Y++L+D L AL ++ M P++ T++
Sbjct: 243 QEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIR 289
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPL--VVACSRKGFETLDSVYFQLENLSRAEPPYK 68
LN + GD + + +S+Y V+ C K ++ F E R P
Sbjct: 401 LNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISP-- 458
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N + G + D+ + + E + G PD+ +++ +I + K+ +A
Sbjct: 459 NLVTFNTFLSGYSVRGDVKKVHGVLEKL-LVHGFKPDVITFSLIINCLCRAKEIKDAFDC 517
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G++PN ++Y++L+ + + D ++ + +M G +P
Sbjct: 518 FKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSP 563
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++ ++N + + + V E L+ G KP+ +++SL+++ ++ K A
Sbjct: 455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDA 514
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
EM+ G P++ T + R C D + + ++ A K+
Sbjct: 515 FDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKE 558
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA-EPPYKSVAAINCVILGCANIW 84
E + P +S + ++C KG + +++ +SR +P + + +L
Sbjct: 348 ERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFS 407
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ DR + +G GL ++SYNA+I K ++ A+ + G+ PN +++
Sbjct: 408 EGDRY---LKQMGVD-GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTF 463
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + D K V+++++ GF P
Sbjct: 464 NTFLSGYSVRGDVKKVHGVLEKLLVHGFKP 493
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
Y+ + CV++G L + A S G+ P YNA+I A K A
Sbjct: 141 YRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAY 200
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + S G KP+ +Y++L+ A+ ++ +M G P+
Sbjct: 201 LKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPN 249
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMEDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
FE ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + A + +EM++ G P+ T
Sbjct: 214 NGLCKESKMEDANELFEEMLDNGLVPNGVT 243
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
Length = 213
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA +D A+ + V S GLTP+I +YN+LIY K K A +F L S
Sbjct: 15 LIHGCAASGSIDEAF-SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 73
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN ++Y+ L+D + A + +MV G P+
Sbjct: 74 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 113
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ C+ G ++D F L ++ + ++ N +I G L RA F +
Sbjct: 15 LIHGCAASG--SIDEA-FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 71
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G++P+ +YN LI + K KT EA ++ + +V G++P ++YS+L+ T
Sbjct: 72 SK-GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYM 130
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A+ ++D+M+ P+
Sbjct: 131 EEAIKLLDQMIENNVDPN 148
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ LIY EA ++ + ++ V PN ++Y L+ ++ + + +
Sbjct: 109 GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEI 168
Query: 161 LSVIDEMVNAGFAPS 175
+ DEM G P+
Sbjct: 169 SKLYDEMHIRGLLPT 183
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G L+ A F + S G+TPD+++YN+LI G EA +++
Sbjct: 998 VVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1057
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
+ G++PN +++ L+ + + + A +V MV GF+P+ T +++ R
Sbjct: 1058 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1113
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++H+YN LI ++ + +A +F+++ SLGVKP A +Y + +D + + D +A
Sbjct: 395 GILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 454
Query: 161 LSVIDEMVNAGFAPS 175
L ++M G AP+
Sbjct: 455 LETFEKMKTKGIAPN 469
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P + Y +++ C K E +++ E + P V +N +I +D A+
Sbjct: 503 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEP--DVIVVNSLINTLYKADRVDEAW 560
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ F + L P + +YN L+ GK K EA +FE +V G PN ++++ L D
Sbjct: 561 KMFMRM-KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 619
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
N + AL ++ +M++ G P
Sbjct: 620 LCKNDEVTLALKMLFKMMDMGCVP 643
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L A Q FE + S +G P+ YN LI FGK + A +F+ +V
Sbjct: 899 LIDGLSKSGRLYEAKQLFEGM-SDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 957
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV+P+ +YS+LVD L E+ +G P
Sbjct: 958 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNP 996
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G ++D A + + S +P +Y LI K + +EA ++FE +
Sbjct: 861 NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMS 920
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G +PN Y++L++ + AA ++ MV G P +T
Sbjct: 921 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 965
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG + +SYN LI+ K + EA V+ ++ G +P+ +YS L+ RD ++
Sbjct: 184 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIES 243
Query: 160 ALSVIDEMVNAGFAPSKET 178
+ ++ EM G P+ T
Sbjct: 244 VMGLLKEMETLGLKPNVYT 262
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 29 FSPFTSLYP--LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
F P Y +V R+ E++ + ++E L Y I +LG A +
Sbjct: 221 FRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIR--VLGRAG--KI 276
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ AY+ + + G PD+ +Y LI A +K A VF + + KP+ ++Y
Sbjct: 277 NEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYIT 335
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D NRD + EM G P
Sbjct: 336 LLDRFSDNRDLDSVNQFWSEMEKDGHVP 363
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD A + F+ + S G+ P ++Y I +GK + A FE +
Sbjct: 404 NTLICGLLRVHRLDDALEIFDNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 462
Query: 134 SLGVKPNAMSYSL-LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC---VRE 189
+ G+ PN ++ + L RD++A + + + G P T + +C V E
Sbjct: 463 TKGIAPNIVACNASLYSLAKAGRDREAK-QIFYGLKDIGLVPDSVTY-NMMMKCYSKVGE 520
Query: 190 MDE 192
+DE
Sbjct: 521 IDE 523
>gi|297844018|ref|XP_002889890.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335732|gb|EFH66149.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-NIWDLDRAYQTFEAV 96
LV AC++ G Y +E +R E + SV A+N +GC N+ ++D + ++ +
Sbjct: 154 LVRACTQNG--DAQGAYEVIEQ-TRTEGFWVSVHALNN-FMGCLLNLNEIDWFWMVYKEM 209
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G +++++N +IY+F K K FEA VF ++ G+ PN +S+++++D D
Sbjct: 210 -DSLGYVENVNTFNLVIYSFCKENKLFEALSVFYRMLKCGIWPNVVSFNMMIDGACKTGD 268
Query: 157 QKAALSVIDEM 167
+ AL ++ +M
Sbjct: 269 MRFALQLLGKM 279
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG--L 102
K FE L SV++++ + +V + N +I G D+ A Q +G G +
Sbjct: 233 KLFEAL-SVFYRMLKCG----IWPNVVSFNMMIDGACKTGDMRFALQLLGKMGVMSGNFV 287
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P+ +YN++I F K + A R+ +V LGV N +Y LVDA+ AL
Sbjct: 288 SPNAVTYNSVINGFCKAGRLDLAERIRGEMVKLGVDCNERTYGALVDAYGRAGSSDEALR 347
Query: 163 VIDEMVNAGFAPS 175
+ DEM + G +
Sbjct: 348 LCDEMTSKGLVAN 360
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++DRA+ + +S GL PD+ +YN ++ F + + EA + ++ GV P+ +Y
Sbjct: 497 NMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTY 555
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L++ H+T + K A V DEM+ GF P
Sbjct: 556 TSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 24 DMEE--IFSPFTSLYPLVVACSRKG-----FETLDSVYFQLENLSRAEPPYKSVAAINCV 76
DMEE +F + L+ A R+G FE +DS+ + P V N +
Sbjct: 122 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMS------GKGLKP--CVFTYNAI 173
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I G RA + + G++PD +YN L+ + +A R+F+ + S G
Sbjct: 174 INGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 232
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V P+ +S+S L+ N AL +M NAG AP
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 270
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI A+ + EA + + + G+KP +Y+ +++ A
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE---MDEE 193
V+DEM+ G +P T + C R MD E
Sbjct: 187 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 222
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A FE + L PD+ +YN LI F K + + + ++ ++S + PN +SY
Sbjct: 357 NMNKAVTLFEMMIQR-NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 415
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+L++ + A + DEMV GF + T + + R
Sbjct: 416 GILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCR 459
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 71 AAINCVILGCA---NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
A N +++ C N+ D +R + S G+ PD+ S++ALI K +A +
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALK 258
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
F + + G+ P+ + Y++L+ N AL V DEM+ G
Sbjct: 259 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 302
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++ LI + K +A +FE ++ +KP+ ++Y+ L+D + +
Sbjct: 337 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 396
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ P+
Sbjct: 397 NELWNDMISRRIYPN 411
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L + ++ + A + +I G I +D A + FE + + GL P++ Y ALI
Sbjct: 661 FKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNE-GLLPNVFCYTALIG 719
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KL + + + S G++PN ++Y++++D + + K A +++EM+ G AP
Sbjct: 720 GHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAP 779
Query: 175 SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
T +++ +E ++ + + ++++ NI LE +Y
Sbjct: 780 DTVTYNALQKGYCKE-------------RELTVTLQSDHKSNIGLPLEEEITY 819
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + +Y LI KL+ EA+ V + S+G PN + ++ L+D + D AL
Sbjct: 321 VNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEAL 380
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALAKKFDIRMNT 211
V DEM G P+ T + + R +M++ V L+ + M+
Sbjct: 381 RVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDV 432
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L ++Y+ F+ G+ PD+ ++ I AF K + +A +F + LGV PN ++Y
Sbjct: 236 ELHKSYEVFDLACQ--GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTY 293
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-EMDEESND 196
+ ++D + + AL D MV + PS T + ++ EM EE+N+
Sbjct: 294 NNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANE 346
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 36 YPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-NIWDLDRAYQTF 93
+ + V S++G F L + L +L +A +KS + G A +++ A F
Sbjct: 206 FDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDLACQGVAPDVFTFTTAINAF 265
Query: 94 EAVG------------SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
G G+ P++ +YN +I K + EA R + +V V P+
Sbjct: 266 CKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSV 325
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
++Y +L+ + + A V+ EM + GFAP++
Sbjct: 326 VTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNE 360
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I GC ++ A++ E V F PD ++YN L+ + K + R+
Sbjct: 540 NTLIFGCCKWGKIEEAFKLKEEMVQQEF--QPDTYTYNFLMKGLADMGKIDDVHRLLHEA 597
Query: 133 VSLGVKPNAMSYSLLVDAH 151
G PN +Y+LL++ +
Sbjct: 598 KEYGFVPNVYTYALLLEGY 616
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +H+Y+ALI A+ K K EA F + G+KP+ ++YS+++D L + K A
Sbjct: 491 GVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKA 550
Query: 161 LSVIDEMVNAGFAPS------------KETLKKVRRRCVREMDEESN 195
+ + EM+ GF P +E + V R +R+M+E S
Sbjct: 551 MGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSG 597
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
QL N R + N +I C+ +L+ A F + S PD+ +YNA+I
Sbjct: 306 LQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDM-ESHRCQPDLWTYNAMIS 364
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G+ + +A +F+ L S G P+A++Y+ L+ A + + + +EMV GF
Sbjct: 365 VYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQ 424
Query: 175 SKET 178
+ T
Sbjct: 425 DEMT 428
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
R + A+ G+ P I + + L+ ++GK + EA V ++L + GV + + YS +
Sbjct: 1071 RKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSV 1130
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+DA+L D KA + + EM AG P
Sbjct: 1131 IDAYLKKGDFKAGIEKLTEMKEAGIEP 1157
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 41/177 (23%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ ACSR+ E +V+ +E+ R +P + A+ V CA + ++ E
Sbjct: 327 LISACSRESNLEEAVAVFSDMES-HRCQPDLWTYNAMISVYGRCARARKAEELFKELE-- 383
Query: 97 GSSFGLTPDIHSYNALIYAF-----------------------------------GKLKK 121
S G PD +YN+L+YAF GK +
Sbjct: 384 --SKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGR 441
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+A +++ + S G P+A++Y++L+D+ + A +V+ EM++AG P+ T
Sbjct: 442 HDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHT 498
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D+A Q + + SS G PD +Y LI + GK K EA+ V ++ GVKP +YS
Sbjct: 443 DQAMQIYRDMKSS-GRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSA 501
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
L+ A+ ++ A + M +G P +
Sbjct: 502 LICAYAKAGKREEAEETFNCMRRSGIKPDR 531
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P + +Y +LI AF K + +A +FE L S G K + Y L++ + T+ D +
Sbjct: 1012 SLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHR 1071
Query: 159 AALSVIDEMVNAGFAPSKETL 179
A +++ M +G P+ T+
Sbjct: 1072 KAENLLAIMKESGIEPTISTM 1092
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +YN LI A + EA VF + S +P+ +Y+ ++ + + A
Sbjct: 316 GIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKA 375
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMD-EESNDRVEALAKK 204
+ E+ + GF P T + RE + E+ D E + K+
Sbjct: 376 EELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKR 420
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 80 CANIWDLDRAYQTFEAVGSSF------GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
C +I L + F+++G + L PD +YN LI + + ++ E + +
Sbjct: 952 CNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMR 1011
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
SLG++P +Y L+ A R + A + +E+ + G+
Sbjct: 1012 SLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGY 1050
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+DRA+ + V ++ G+ P++H+YN +I K ++ EA + E++ SLGVKP A SY
Sbjct: 390 DVDRAFDMLD-VMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L +D + + D A+ + M G PS
Sbjct: 449 VLFIDYYGKSGDPAKAIDTFETMKKRGIMPS 479
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YF+ L+ +P + N +I G LD A F + + G++PD+++YNALI
Sbjct: 993 YFEELKLTGLDP---DTVSYNFIINGLGKSRRLDEALSLFSEMKNR-GISPDLYTYNALI 1048
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G K A +++E L +G++P+ +Y+ L+ H + ++ A SV +M+ G +
Sbjct: 1049 LHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCS 1108
Query: 174 PSKETLKKVRRRCVR 188
P+ ET ++ + R
Sbjct: 1109 PNTETFAQLPNKYPR 1123
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Query: 2 GDLQRAFITLNEFETAYG-DSIIDMEEIFSPFTSLYPLV-VACSRKGFETLDSVYFQLEN 59
G+L +T E E A I+ + + PL+ V C RK +V+ +
Sbjct: 729 GELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVF---DK 785
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
++ + ++ + NC++ G ++A + FE + S+ G P+ +YN L+ A GK
Sbjct: 786 FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA-GTHPNNFTYNLLLDAHGKS 844
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
K+ + ++ + S G +PNA+++++++ A + + + AL + E+++ F+P+ T
Sbjct: 845 KRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCT 903
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP + Y +++ C K + + E +S+ P V IN +I +D
Sbjct: 511 LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEP--DVMIINSLINTLYKAGRVDA 568
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ F + + L P + +YN L+ GK K +A +F + G PN ++++ L+
Sbjct: 569 AWKMFGRL-KNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLL 627
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
D N AL + M P T + +RE
Sbjct: 628 DCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIRE 668
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+AL+ A G+ T + + E + S+G++PN +Y++ + A R A
Sbjct: 230 GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDA 289
Query: 161 LSVIDEMVNAGFAP 174
+ EM + G P
Sbjct: 290 WGIFKEMDDEGCGP 303
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + +G P+ YN LI FGK + A +F+ +V G++P+ SY++
Sbjct: 918 EQAMKIFEEM-LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTI 976
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LV+ A+ +E+ G P
Sbjct: 977 LVECLCITGRIDEAVQYFEELKLTGLDP 1004
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ G + +SYN LI+ L F EA +V++ ++S G+KP+ +YS L+ A
Sbjct: 193 TEVGFILNAYSYNGLIHL---LLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRG 249
Query: 156 DQKAALSVIDEMVNAGFAPSKET-------LKKVRR-----RCVREMDEES 194
D + +++++EM + G P+ T L + RR +EMD+E
Sbjct: 250 DTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEG 300
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+A + + + +S +PD +Y L+ FGK+ R + + G P+ ++Y+
Sbjct: 321 LDKAKELYVKMRAS-SHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYT 379
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++A + D A ++D M G P+ T
Sbjct: 380 ILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHT 412
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
+E + F TP +Y LI K ++ +A ++FE ++ G PN++ Y++L++
Sbjct: 890 YELMSGDFSPTP--CTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFG 947
Query: 153 TNRDQKAALSVIDEMVNAGFAP 174
+ + A + +MV G P
Sbjct: 948 KSGEIDFACELFKKMVKEGIRP 969
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++DRA+ + +S GL PD+ +YN ++ F + + EA + ++ GV P+ +Y
Sbjct: 758 NMDRAFALVNKMENS-GLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTY 816
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L++ H+T + K A V DEM+ GF P
Sbjct: 817 TSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 24 DMEE--IFSPFTSLYPLVVACSRKG-----FETLDSVYFQLENLSRAEPPYKSVAAINCV 76
DMEE +F + L+ A R+G FE +DS+ + P V N +
Sbjct: 383 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMS------GKGLKP--CVFTYNAI 434
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I G RA + + G++PD +YN L+ + +A R+F+ + S G
Sbjct: 435 INGLCKTGKYLRAKGVLDEM-LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 493
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V P+ +S+S L+ N AL +M NAG AP
Sbjct: 494 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 531
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI A+ + EA + + + G+KP +Y+ +++ A
Sbjct: 388 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 447
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE---MDEE 193
V+DEM+ G +P T + C R MD E
Sbjct: 448 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 483
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A FE + L PD+ +YN LI F K + + + ++ ++S + PN +SY
Sbjct: 618 NMNKAVTLFEMMIQR-NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 676
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+L++ + A + DEMV GF
Sbjct: 677 GILINGYCNMGCVSEAFRLWDEMVEKGF 704
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A N +++ C ++ A + F+ + S G+ PD+ S++ALI K +A + F
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFR 522
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ + G+ P+ + Y++L+ N AL V DEM+ G
Sbjct: 523 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++ LI + K +A +FE ++ +KP+ ++Y+ L+D + +
Sbjct: 598 GVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 657
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ P+
Sbjct: 658 NELWNDMISRRIYPN 672
>gi|224141275|ref|XP_002324000.1| predicted protein [Populus trichocarpa]
gi|222867002|gb|EEF04133.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F + G P + SY AL+ A K + EA RV+EH++
Sbjct: 471 NAVLVACSKASETAAAVQIFRRMVEQ-GEKPTVISYGALLSALEKGRLYDEAVRVWEHML 529
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GVKPN +Y+++ + + ++I+EMV+ G P+ T + C R
Sbjct: 530 KVGVKPNVYAYTIMASVFTRQGNFRLVDAIINEMVSTGIEPTVVTYNAIISGCAR 584
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ YN+L+ A + ++ E ++ E + GV PN ++Y++L+ ++ K AL
Sbjct: 189 IVPNLFIYNSLLSAVKQSEQYEETEKILERMTQEGVAPNVVTYNILMVIYVKQGQAKKAL 248
Query: 162 SVIDEMVNAGFAPS 175
V++EM GF PS
Sbjct: 249 DVLEEMRRNGFTPS 262
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F +V G KP +SY L+ A R A
Sbjct: 462 GLKPGSKEWNAVLVACSKASETAAAVQIFRRMVEQGEKPTVISYGALLSALEKGRLYDEA 521
Query: 161 LSVIDEMVNAGFAPS 175
+ V + M+ G P+
Sbjct: 522 VRVWEHMLKVGVKPN 536
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV---DAHLTNRDQKA----ALS 162
N +I+ GK KK + A V+E L+ G KPN +SY L+V + LT ++ +
Sbjct: 394 NHVIWLMGKAKKWWAALEVYEDLLDKGPKPNNLSYELIVSYFNVLLTAAKKRGIWRWGVR 453
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M G P + V C +
Sbjct: 454 LLNKMEEKGLKPGSKEWNAVLVACSK 479
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G L+ A F + +S G+TPD+++YN+LI G EA +++
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
+ G++PN +++ L+ + + + A +V MV GF+P+ T +++ R
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++H+YN LI ++ + +A +F ++ SLGVKP A +Y + +D + + D +A
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452
Query: 161 LSVIDEMVNAGFAPS 175
L ++M G AP+
Sbjct: 453 LETFEKMKTKGIAPN 467
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P + Y +++ C K E +++ E + P V +N +I +D A+
Sbjct: 501 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP--DVIVVNSLINTLYKADRVDEAW 558
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ F + L P + +YN L+ GK K EA +FE +V G PN ++++ L D
Sbjct: 559 KMFMRM-KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 617
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
N + AL ++ +M++ G P
Sbjct: 618 LCKNDEVTLALKMLFKMMDMGCVP 641
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G ++D A + + S +P +Y LI K + +EA ++FE ++
Sbjct: 859 NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML 918
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G +PN Y++L++ + AA ++ MV G P +T
Sbjct: 919 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L A Q FE + +G P+ YN LI FGK + A +F+ +V
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 955
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV+P+ +YS+LVD L E+ +G P
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG + +SYN LI+ K + EA V+ ++ G +P+ +YS L+ RD +
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 160 ALSVIDEMVNAGFAPSKET 178
+ ++ EM G P+ T
Sbjct: 242 VMGLLKEMETLGLKPNVYT 260
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 27 EIFSPFTSLYP--LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E F P Y +V R+ +++ + ++E L Y I +LG A
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR--VLGRAG-- 272
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ AY+ + + G PD+ +Y LI A +K A VFE + + KP+ ++Y
Sbjct: 273 KINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D NRD + EM G P
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 29 FSPFTSLY-PLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
FSP Y PL+ S+ G +E L+ R + A N +I G +
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP-----NCAIYNILINGFGKAGE 941
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
D A F+ + G+ PD+ +Y+ L+ + + E F+ L G+ P+ + Y+
Sbjct: 942 ADAACALFKRMVKE-GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 146 LLVDAHLTNRDQKAALSVIDEM-VNAGFAP 174
L+++ + + AL + +EM + G P
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+TLD + R + ++ N +I G + LD A + F + S G+ P
Sbjct: 383 FDTLD--------VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM-ESLGVKPTA 433
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-LVDAHLTNRDQKAALSVID 165
++Y I +GK + A FE + + G+ PN ++ + L RD++A +
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK-QIFY 492
Query: 166 EMVNAGFAPSKETLKKVRRRC---VREMDE 192
+ + G P T + +C V E+DE
Sbjct: 493 GLKDIGLVPDSVTY-NMMMKCYSKVGEIDE 521
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F +L + ++ + +AE K SV N +I G + DR +Q E +
Sbjct: 424 FNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQM- 482
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ P++ SY +LI K K EA V ++ GV PNA Y++L+D
Sbjct: 483 EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKV 542
Query: 158 KAALSVIDEMVNAGFAPS 175
K AL DEM+ + +P+
Sbjct: 543 KDALRFFDEMMRSEISPT 560
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
+PL+ CS++G E ++ +Y ++ ++ A I+C A I + +AY +
Sbjct: 635 HPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCY----AEIGNTQKAYSLHQG 690
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ G+ PD +YN+LI + K + ++ + + P A +Y +LV H +
Sbjct: 691 MLDQ-GIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLK 749
Query: 156 DQKAALSVIDEMVNAGFAPS 175
D A EMV F P+
Sbjct: 750 DFSGAYVWYREMVENNFLPN 769
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
++ ++D+A + + + G+TP + +YN LI +GKL ++ E + +GVKPN
Sbjct: 432 CDMKEMDKAEEWVKKMAEK-GVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPN 490
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+SY L++ + A V+ +M+ G P+ +
Sbjct: 491 VVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQV 528
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N +I G + +LD A++ E + + P+I ++N+L+ K++K EA +
Sbjct: 245 SIVTYNTLIDGYCKVGELDAAFKMRERMKEK-SVAPNIITFNSLLSGLCKMRKMKEARSL 303
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + G P+ +YS+L D L D A+ + ++ G
Sbjct: 304 LKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGI 347
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N + G I D+++A T E + SFGL P+ ++N+LI F +K+ +A + +
Sbjct: 390 NTFVNGYCRIGDMNKAILTIERM-ESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA 448
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV P+ +Y+ L+D + ++++M G P+
Sbjct: 449 EKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPN 490
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D YN + + ++ +A E + S G++PN+++++ L+D ++ A
Sbjct: 381 GLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKA 440
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +M G PS ET
Sbjct: 441 EEWVKKMAEKGVTPSVET 458
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ YN LI + K+ +A ++F+ + ++ + + ++Y+ L+D + + AA
Sbjct: 206 GVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAA 265
Query: 161 LSVIDEMVNAGFAPS 175
+ + M AP+
Sbjct: 266 FKMRERMKEKSVAPN 280
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
+ G E LDS+ R +V N +I G + A + F+ + + L
Sbjct: 193 KMGMEFLDSM--------RKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEM-CNINLV 243
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
I +YN LI + K+ + A ++ E + V PN ++++ L+ R K A S+
Sbjct: 244 GSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSL 303
Query: 164 IDEMVNAGFAPSKET 178
+ EM GF P T
Sbjct: 304 LKEMEVNGFMPDGYT 318
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA +D A+ + V S GLTP+I +YN+LIY K K A +F L S
Sbjct: 741 LIHGCAASGSIDEAF-SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN ++Y+ L+D + A + +MV G P+
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 839
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ C+ G ++D F L ++ + ++ N +I G L RA F +
Sbjct: 741 LIHGCAASG--SIDEA-FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 797
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G++P+ +YN LI + K KT EA ++ + +V G++P ++YS+L+ T
Sbjct: 798 SK-GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYM 856
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A+ ++D+M+ P+
Sbjct: 857 EEAIKLLDQMIENNVDPN 874
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ YN +I KL + E +V + + +G++P+ SY+ L+D + + A
Sbjct: 354 GIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413
Query: 161 LSVIDEMVNAGFAPSKET 178
+ MV G A + T
Sbjct: 414 FEMCRMMVRNGLAATTLT 431
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL ++ ++N +I K+ + EA + + + L P++++Y L D + A
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553
Query: 161 LSVIDEMVNAGFAPSKE 177
++++M + GFAPS E
Sbjct: 554 THLMNKMEHLGFAPSVE 570
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
GL ++ +Y+A++ + + T +A R+ E L G+ PN ++Y+LLV + + +
Sbjct: 246 GMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRME 305
Query: 159 AALSVIDEMVNAG 171
A V+ EM G
Sbjct: 306 EAERVVKEMKETG 318
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ LIY EA ++ + ++ V PN ++Y L+ ++ + + +
Sbjct: 835 GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEI 894
Query: 161 LSVIDEMVNAGFAPS 175
+ DEM G P+
Sbjct: 895 SKLYDEMHIRGLLPT 909
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S+ GL+P++ +Y ALI + K EA ++ +V+ G+ PN S L+
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655
Query: 158 KAALSVIDEMVNAGFAPS 175
A V+ ++VN P
Sbjct: 656 DEANLVLQKLVNIDMIPG 673
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A +TF+ + + GL PDI SY +L+ A+G+ + +A VF + KPN +SY+ L+
Sbjct: 384 ALETFKLLKQN-GLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALI 442
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
DA+ + K A+S++ EM G P ++ + C R D + A AK I+
Sbjct: 443 DAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQ 502
Query: 209 MNT 211
+NT
Sbjct: 503 LNT 505
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + K +A +F + KPN +Y+ L+ AH A++++D+M
Sbjct: 156 YGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQ 215
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T V C
Sbjct: 216 RAAIPPSRTTYNNVINAC 233
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 37 PLVVACSR--KGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P VV C++ KGF L +E L P V + N +I G + +D A Q
Sbjct: 95 PDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDP--DVYSYNAMISGFSKANQIDSANQ 152
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
F+ + S G +PD+ +YN +I + GKL+ FE V + L+ G KP+ ++Y++L+
Sbjct: 153 VFDRMRSR-GFSPDVVTYNIMIGSLCSRGKLELAFE---VMDELLKDGCKPSVITYTILI 208
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE-MDEESNDRVEALAKK 204
+A + AL + DE+V+ G P T + R +E M++ + D V L+ +
Sbjct: 209 EATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSAR 265
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
+S+YF +S+ P V +I G N +L +A + E + ++G PD++SYN
Sbjct: 80 ESLYFLESVVSKGFKP--DVVLCTKLIKGFFNSRNLKKAMRVMEIL-ETYG-DPDVYSYN 135
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
A+I F K + A++VF+ + S G P+ ++Y++++ + + + A V+DE++
Sbjct: 136 AMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKD 195
Query: 171 GFAPS 175
G PS
Sbjct: 196 GCKPS 200
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DRA + S+ G PD+ SYN L+ +F + + R+ + +V
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHL-SARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMV 298
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PN +++S+L+ + + A++V++ M G P
Sbjct: 299 LSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTP 339
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 29 FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD- 85
FSP Y +++ CSR E V +L L P + I IL A I +
Sbjct: 162 FSPDVVTYNIMIGSLCSRGKLELAFEVMDEL--LKDGCKP----SVITYTILIEATILEG 215
Query: 86 -LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ A + F+ + S GL PD+++YNA+I K A HL + G P+ +SY
Sbjct: 216 RINEALELFDELVSR-GLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++L+ + L + ++ +MV +G P+ T
Sbjct: 275 NILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ K A VFE L +G P +Y+
Sbjct: 357 LDLAIEYLEKMVSD-GCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYN 415
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + ++ AL +I EM+ G P + T
Sbjct: 416 TMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD +SY+ LI AF K + A E +VS G P+ ++Y+ ++ A
Sbjct: 336 GLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLA 395
Query: 161 LSVIDEMVNAGFAPS 175
L V +++ G P+
Sbjct: 396 LDVFEKLDEVGCPPT 410
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKTAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + R
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCR 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQARDLIDEMSMK 305
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 151 DIRVAQSVFNAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 243
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
Y ALI + + +A +V ++S+G+KP+ ++Y+++++ D ++ EM
Sbjct: 348 GYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G PS
Sbjct: 408 QRDGQMPS 415
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY + +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 316 TLIDGXCKEGDLETAFEHRKRMIQ 339
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N +I G + DLD ++ A+ +S G PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLINGYIKLGDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+ H N A+ + +M++ G +P
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSP 274
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S GL+PD+ +YN LIY K + + + + ++ G+KP+ +SY+
Sbjct: 257 VDLAMEIYKQMLSQ-GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + AL + ++M+
Sbjct: 316 TLIDGSCKEGDLEIALELRNKMIQ 339
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N LI + KL E R+ + + G +P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + +EM++ G P+ T
Sbjct: 214 NGLCKEGKLDEANELFNEMLDNGLVPNGVT 243
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + + +A ++ ++S+G+KP+ +Y+++++ RD K A ++ EM
Sbjct: 348 AYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407
Query: 168 VNAGFAPS 175
G P
Sbjct: 408 QRDGPLPG 415
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G+ PD +SYN +IYA+G+ + EASR+
Sbjct: 639 SAATYNSLMHMYSRLGDCEKCESILTEIKSS-GMRPDRYSYNTVIYAYGRKGQMKEASRL 697
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + GVKP+ ++Y++ + +++ N + A+ ++ +V G P++ T +
Sbjct: 698 FSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSI 751
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +I G + +D A T+ + + G +P++ +YNALI G K E VF
Sbjct: 360 VVTYTTLISGLDRVGKIDAALATYSEMVRN-GCSPNLCTYNALIKLHGVRGKFTEMMAVF 418
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L S G P+ ++++ L+ N V EM AG+ P ++T
Sbjct: 419 DDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDT 467
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++YN LI + EA++VF+ + + G +P+ ++++ L+D + R + A
Sbjct: 250 GIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEA 309
Query: 161 LSVIDEMVNAGFAPS 175
+ V+ M NAG PS
Sbjct: 310 IGVLKRMENAGCTPS 324
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 76 VILGCANIWDLDR-AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
++ C L R A Q F+ + ++ G PD ++N+L+ +GK +K EA V + + +
Sbjct: 260 TLISCCRRRGLHREAAQVFDEMKAA-GFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMEN 318
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ ++Y+ L+ A++ + + AL + EM G P
Sbjct: 319 AGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 358
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 26/191 (13%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLY------------PLVVACSRKGFET 49
G +Q A +T N AY + +E+ + S+ L+ C R+G
Sbjct: 213 GGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHR 272
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG-----SSFGLTP 104
+ F + EP N ++ +++ R ++ EA+G + G TP
Sbjct: 273 EAAQVFDEMKAAGFEP---DKVTFNSLL----DVYGKARKHE--EAIGVLKRMENAGCTP 323
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ +YN+LI A+ K EA + + + G+KP+ ++Y+ L+ AAL+
Sbjct: 324 SVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATY 383
Query: 165 DEMVNAGFAPS 175
EMV G +P+
Sbjct: 384 SEMVRNGCSPN 394
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI ++ K A + +V G PN +Y+ L+ H
Sbjct: 355 GMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEM 414
Query: 161 LSVIDEMVNAGFAP 174
++V D++ +AG+ P
Sbjct: 415 MAVFDDLRSAGYVP 428
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ PDI +YNA++ A + + +A ++F +V KP+ +SYS L+ A+
Sbjct: 495 GIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY 545
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAALS 162
PD +Y AL+ AF + + +A VF+ +V GV+P ++Y+++ A+ + K ++
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D M G + T + C R
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRR 267
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 423 SAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 482
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + M+ AG P T V
Sbjct: 483 QAMEIYKRMIEAGIYPDISTYNAV 506
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YFQ S +P A C+I G N +D Y + + G PD +YNALI
Sbjct: 324 YFQEMIDSGCKP---DAAVYTCLITGFGNRKRMDMVYDLLKEMKEE-GCPPDGLTYNALI 379
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+LK +A+R+++ + G++P +Y++++ ++ R+ + +V DEM GF
Sbjct: 380 KLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFC 439
Query: 174 P 174
P
Sbjct: 440 P 440
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVA---------------AINCV 76
F ++ ++ KG T+D+ + + A+ K+VA IN +
Sbjct: 145 FETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHL 204
Query: 77 I--LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+ LG A + A FE + F TP++ +Y L+ + K+K EA V+ ++
Sbjct: 205 LDSLGRAKLGK--EAQALFENLKGRF--TPNLRTYTVLLNGWCKVKNLMEAGSVWNEMID 260
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G KP+ ++++++++ L ++ + A+ + M G +P
Sbjct: 261 KGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSP 300
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ SY LI + K EA F+ ++ G KP+A Y+ L+ +
Sbjct: 297 GPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMV 356
Query: 161 LSVIDEMVNAGFAP 174
++ EM G P
Sbjct: 357 YDLLKEMKEEGCPP 370
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI ++N ++ + K+ +A ++F + + G P+ SY++L+ + A
Sbjct: 262 GFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEA 321
Query: 161 LSVIDEMVNAGFAP 174
+ EM+++G P
Sbjct: 322 VEYFQEMIDSGCKP 335
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Query: 39 VVACSRKGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
V C GF + +D VY L+ + P + N +I + D A + ++
Sbjct: 339 VYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLT-YNALIKLMTRLKMPDDAARIYKK 397
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ S G+ P IH+YN ++ ++ + + V++ + G P+ SY++L+ ++
Sbjct: 398 MTQS-GIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQG 456
Query: 156 DQKAALSVIDEMVNAGF-APS 175
A ++EM+ G AP
Sbjct: 457 RSGEACKYLEEMLEKGMKAPQ 477
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEA 125
+V + N V+ G + L+RA E + +G++P++ +YN LI + G++ K ++A
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDM-KVWGVSPNVITYNTLIDGYCKMGRIGKMYKA 212
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V+ G+ PN ++Y++L+D + + A+ V EM G P+
Sbjct: 213 DAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + +D A + + SS L P++ ++N LI F K K EA +
Sbjct: 262 NVVTYNILINGLCSDGKVDEAVALRDQMVSS-DLEPNVVTHNVLINGFCKNKTVNEAINL 320
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F + GV PNAM+Y+ L+DA+ + + A ++ + M++ G P T
Sbjct: 321 FNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVST 370
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN LI F K + A RVF + G++PN ++Y++L++ ++ A
Sbjct: 223 GICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEA 282
Query: 161 LSVIDEMVNAGFAPS 175
+++ D+MV++ P+
Sbjct: 283 VALRDQMVSSDLEPN 297
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F L N+ + V+ NC+I G D+ A + S L+ D+ +YN LI
Sbjct: 353 FALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSK-KLSADVVTYNILID 411
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ K ++ +A ++ + + G+ P+ ++Y+ L+D + + +AAL V M G
Sbjct: 412 SLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN LI + A + +VS + + ++Y++L+D+ + + A
Sbjct: 363 GIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKA 422
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++DEM G PS T
Sbjct: 423 VKLLDEMFEKGLNPSHVT 440
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ +YN LI K EA + + +VS ++PN +++++L++ N+ A
Sbjct: 258 GLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEA 317
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ ++M G P+ T
Sbjct: 318 INLFNDMEKQGVDPNAMT 335
>gi|308804632|ref|XP_003079628.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
gi|116058084|emb|CAL53273.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
Length = 616
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FE + S GLTP+++SY ++ A ++ + + ++++ + GV+PN ++Y++LV
Sbjct: 137 AKEAFERIARS-GLTPNVYSYTNMLNAATRVSEVGQMRKIWKEMRDAGVEPNEVAYTVLV 195
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
+ A ++ EM++ G P++ T + R CVR D E+
Sbjct: 196 KGECQAGNIDRAREIVREMIDGGVEPNQRTYGTLLRNCVRYGDVEN 241
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N +I G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 168 SVVSFNTLINGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 226
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 227 FDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 272
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +GL P + S+N LI + +L E R+ + + GV+P+ +YS+L++
Sbjct: 161 TKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 220
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + DEM++ G P+ T
Sbjct: 221 DDANELFDEMLDKGMVPNGVT 241
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K + +A + + + G+KP+ ++Y+
Sbjct: 255 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYT 313
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 314 TLIDGCCKEGDMETAFEHQKRMIQ 337
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N +I G + DLD ++ A+ +S G PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLINGYIKLGDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+ H N A+ + +M++ G +P
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSP 274
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S GL+PD+ +YN LIY K + + + + ++ G+KP+ +SY+
Sbjct: 257 VDLAMEIYKQMLSQ-GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + AL + ++M+
Sbjct: 316 TLIDGSCKEGDLEIALELRNKMIQ 339
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N LI + KL E R+ + + G +P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + +EM++ G P+ T
Sbjct: 214 NGLCKEGKLDEANELFNEMLDNGLVPNGVT 243
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + + +A ++ ++S+G+KP+ +Y+++++ RD K A ++ EM
Sbjct: 348 AYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407
Query: 168 VNAGFAPS 175
G P
Sbjct: 408 QRDGPVPG 415
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMIDNGLVPNGVT 243
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 157 SVVSFNTLMNGYIRLGDLDEGFRLKNAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 215
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 216 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCK 275
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 276 KGDLKQAHDLIDEMSMK 292
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 138 DIRLAQSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTY 196
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 197 SVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 230
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN L Y K +A + + + G+KP+ ++Y+
Sbjct: 244 VDLAMEIYKQMLSQ-SLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 302
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 303 TLIDGCCKEGDMETAFEHQKRMIQ 326
>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 808
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ A F+ + +S GL PD+ SY +L+ ++G+ K+ +A +F + +KPN +S++
Sbjct: 372 EEALSVFKKIKAS-GLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNA 430
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
L+DA+ +N A+ V+ EM G P+ T+ + C R + + D V + AK
Sbjct: 431 LIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRG 490
Query: 207 IRMNT 211
I++NT
Sbjct: 491 IKLNT 495
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YNALI A G+ + A + E ++ + P+ +Y+ L++A ++ + + AL V
Sbjct: 176 PDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKV 235
Query: 164 IDEMVNAGFAP 174
+M G P
Sbjct: 236 SKQMTENGVGP 246
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + T +A +F + KP++ +Y+ L++AH + A++++++M+
Sbjct: 146 YNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDML 205
Query: 169 NAGFAPSKETLKKVRRRC 186
PS+ T + C
Sbjct: 206 REAIPPSRSTYNNLINAC 223
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P N VI + ++A F ++ PDI ++ ++
Sbjct: 270 YFELMKGTNIRP---DTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSI 326
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + VF +++ G+ P +SY+ L+ A+ + + ALSV ++ +G
Sbjct: 327 IHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGL 386
Query: 173 AP 174
P
Sbjct: 387 LP 388
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+ E P +Y PL++ S++G +L LEN+++A + N +I G + +
Sbjct: 482 ISEGLKPNAFMYAPLIIGHSKEGHISL--ACESLENMTKANV-LPDLFCYNSLIKGLSTV 538
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++ A + + V GL PD +Y+ LI+ + K + +A ++ + +++ G+KPNA +
Sbjct: 539 GRIEEAEEYYAQV-QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
Y+ L++ + + D + S++ M+ +G P V R R + E
Sbjct: 598 YTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENME 647
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D+++A + + GL P I YNALI F + A VF+ +++
Sbjct: 671 LISGLCKMADMEKAVGLLDEMAKE-GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAK 729
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D + N D A + +M++ G AP
Sbjct: 730 GLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAP 768
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+ V+ E + R + V N +I G ++ A+ F+ +G
Sbjct: 256 CKARDFDAAKKVF---EEMRRRDCAMNEVT-YNVMISGLCRSGAVEEAF-GFKEEMVDYG 310
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD +Y AL+ K + EA + + + G+KPN + Y+ LVD + A
Sbjct: 311 LSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAF 370
Query: 162 SVIDEMVNAGFAPSK 176
+++EM++AG P+K
Sbjct: 371 DILNEMISAGVQPNK 385
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P+ Y+ LI K+ + AS++ ++ +G +P+ +Y L+ H + D+
Sbjct: 378 SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKD 437
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +++EM N+G P+ T
Sbjct: 438 GAFELLNEMRNSGILPNAYT 457
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G D+ RA F+++ + GL P+ +Y ALI K +A +
Sbjct: 699 GIVCYNALIDGFCRSGDISRARNVFDSILAK-GLLPNCVTYTALIDGNCKNGDITDAFDL 757
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++ ++ G+ P+A Y++L D + AL + +EM N G+A VR C R
Sbjct: 758 YKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKR 817
Query: 189 EMDEESNDRVEALAKKFDIRMNTENRKNIL 218
+E+ + + + +I N + +N++
Sbjct: 818 GRLQETEKLLHVMMDR-EIVPNAQTVENVI 846
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+H Y++LI K+ +A + + + G++P + Y+ L+D + D A
Sbjct: 660 GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 719
Query: 161 LSVIDEMVNAGFAPS 175
+V D ++ G P+
Sbjct: 720 RNVFDSILAKGLLPN 734
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
+D D A++ + +S G+ P+ ++Y +I + ++ EA + E ++S G+KPNA
Sbjct: 434 YDKDGAFELLNEMRNS-GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM 492
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+ H A ++ M A P
Sbjct: 493 YAPLIIGHSKEGHISLACESLENMTKANVLP 523
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P++ Y L+ F K K EA + ++S GV+PN + Y L+
Sbjct: 342 SCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQL 401
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
A +++EM+ G P T + + + D++
Sbjct: 402 GRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDG 438
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I L RA + + G PD +Y+ L+ + A + + +
Sbjct: 391 LIRGLCKIGQLGRASKLLNEM-IKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNS 449
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PNA +Y ++++ N + K A ++++EM++ G P+
Sbjct: 450 GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPN 489
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+++Y+ + A K + A +VFE + N ++Y++++ + + A
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299
Query: 161 LSVIDEMVNAGFAP 174
+EMV+ G +P
Sbjct: 300 FGFKEEMVDYGLSP 313
>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 687
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 13/187 (6%)
Query: 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
D + A L+EF+ + G S T+ Y + +A G + +V E +
Sbjct: 90 DWRTALAALDEFKISGG----------SLDTTSYNIAIAACSNGRQWATAVRLLREMPTE 139
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P V N I C+ A + V + G+TPD+ +YN+ I A +
Sbjct: 140 GVTP--DVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGR 197
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
EA + E +V+ GV PN ++Y+ + A R + A+ +++E++ GF PS T
Sbjct: 198 WKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNP 257
Query: 182 VRRRCVR 188
V C +
Sbjct: 258 VIDACAK 264
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+E+ F P T Y P++ AC++ G E +D + L N A+ V + + VI C
Sbjct: 244 IEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPAD-----VISYSSVIAACG 298
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
A E + + G++P++ SYN+ I A K + EA + + ++G+ P
Sbjct: 299 RGRRWKEAMDLLEQMRTQ-GVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTV 357
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+SY+ A N AL ++ EM G AP+ + C +
Sbjct: 358 ISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAK 404
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLK 120
P + + N + CA ++ + EA+G ++ GLTP+ SY A I+A GK +
Sbjct: 563 PKPDIISYNSAVTACA------KSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGE 616
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A R+ + + + G PN ++YS +DA K A+ ++ ++ G P +T
Sbjct: 617 QWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQT 674
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
AC+ KG +++ E + + PP S N VI CA R + + +G
Sbjct: 226 ACA-KGRRWEEAMDLLEEVIEQGFPP--STRTYNPVIDACAK---GGRWLEAMDLLGQML 279
Query: 101 --GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ D+ SY+++I A G+ ++ EA + E + + GV PN +SY+ +DA K
Sbjct: 280 TNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWK 339
Query: 159 AALSVIDEMVNAGFAPS 175
AL ++ EM G P+
Sbjct: 340 EALDLLREMTTVGLVPT 356
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N I C + A + + ++ GLTP++ +YN+ I A G+ + EA +F
Sbjct: 427 IISFNSAIDACGRGQQWETAVELLREMPTA-GLTPNVITYNSAIEACGRSARWQEAMGLF 485
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + G+ PN ++Y+ ++DA + A+ ++ M G AP
Sbjct: 486 REMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAP 530
Score = 45.1 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I CA + A Q + + G+ PD+ SYN+ I A GK ++ A ++
Sbjct: 496 NVVTYNSMIDACAKGEQWELAVQLLTGMPAR-GVAPDVISYNSAIEACGKGEQWELALQL 554
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + G KP+ +SY+ V A + + AL ++ +M G P+
Sbjct: 555 LKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPN 601
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N I C + A Q + + + G PDI SYN+ + A K + EA +
Sbjct: 532 VISYNSAIEACGKGEQWELALQLLKGMPTR-GPKPDIISYNSAVTACAKSGRWREALGLL 590
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + ++G+ PN +SY + A A+ ++ EM G P+ T C ++
Sbjct: 591 KDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQ 650
Score = 43.9 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 64 EPPYKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
E P + +A + N + CA ++A + + S+ G PDI S+N+ I A G+
Sbjct: 382 EMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGM-STVGSDPDIISFNSAIDACGRG 440
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
++ A + + + G+ PN ++Y+ ++A + + A+ + EM G +P+ T
Sbjct: 441 QQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTY 500
Query: 180 KKVRRRCVR 188
+ C +
Sbjct: 501 NSMIDACAK 509
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
E +P Y +A KG +++ + ++ E V N I C+N
Sbjct: 139 EGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRW 198
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
A E + + G+ P++ +YN+ I A K ++ EA + E ++ G P+ +Y+
Sbjct: 199 KEAMDLLEQMVAQ-GVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNP 257
Query: 147 LVDAHLTNRDQKAALSVIDEMV 168
++DA A+ ++ +M+
Sbjct: 258 VIDACAKGGRWLEAMDLLGQML 279
Score = 37.0 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 34 SLYPLVVACSR--KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
S ++ AC R + E +D LE + R + +V + N I CA DR +
Sbjct: 289 SYSSVIAACGRGRRWKEAMD----LLEQM-RTQGVSPNVISYNSAIDACAK---GDRWKE 340
Query: 92 TFEAVG--SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ + ++ GL P + SYN+ A + EA + + + + G+ PN +SY+ +D
Sbjct: 341 ALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALD 400
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
A + A+ ++ M G P + C R E+
Sbjct: 401 ACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWET 445
>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
Length = 542
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 73 INCVIL--GCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
++C IL G I DL+ A + E +G +G+ PD+ +Y ++ A+ A ++F
Sbjct: 201 VSCNILLKGLVGIGDLNSALKVLDEMIG--WGIVPDVVTYTTVLTAYCAKGDLEGAQQLF 258
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ +++ G +P+A Y++L+D + +R + A ++DEM AG P++ T V C +E
Sbjct: 259 DDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKE 318
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL+ A Q F+ + +S G PD Y LI + +K +A+R+ + + + GV+PN ++Y
Sbjct: 250 DLEGAQQLFDDIIAS-GRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTY 308
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
S++++A R A + EM+ AG+ P K V C E+N+ + K
Sbjct: 309 SVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVK 368
Query: 204 K 204
K
Sbjct: 369 K 369
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI + + EA RV++ +V +PNAM+Y L+
Sbjct: 404 GFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEG 463
Query: 161 LSVIDEMVNAGFAPSK 176
++ EM++ G PSK
Sbjct: 464 YALFKEMMSRGCTPSK 479
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 69 SVAAINCVILG-CAN--------IWD--LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
S+ N +I+G C N +WD ++R Y+ P+ +Y ALI F
Sbjct: 408 SLLTYNSLIIGLCENGELQEAGRVWDDMVERRYE------------PNAMTYEALIKGFC 455
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
K+ K+ E +F+ ++S G P+ Y LVD+
Sbjct: 456 KIGKSNEGYALFKEMMSRGCTPSKFLYQALVDS 488
>gi|392593948|gb|EIW83273.1| hypothetical protein CONPUDRAFT_81278 [Coniophora puteana
RWD-64-598 SS2]
Length = 476
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
Query: 7 AFITLNEFETAYGD-SIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
AF + + + A+G S++ + +++P+ A R + +D + L+ L R E
Sbjct: 230 AFCRVGKMKEAFGTLSVLRANGVTPVSDTVHPIFEAL-RADVDRIDDSWTTLDAL-RTEG 287
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
AA+N ++ C + DL RA ++A G +G PDI ++NAL+ +
Sbjct: 288 KDIDTAALNALVQACVALGDLQRAIGAYQAFGE-YGAAPDIETFNALLAGCVSAQHRALG 346
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
R+ L + G+ P+A +Y +V LT + A ++EM F P + R
Sbjct: 347 DRLLGELKAAGITPDARTYERIVLLCLTQPQYEDAFFYLEEMKAQKFMPPLSVYDTLIRT 406
Query: 186 C 186
C
Sbjct: 407 C 407
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ YN L+ +T EA+ V + + ++G++P+ ++Y L++AH R K A
Sbjct: 6 VKPDLDFYNTLLSGLAYEARTVEANAVVDDMQAMGIEPDRITYHHLIEAH-RYRPSKFAW 64
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR 185
+I+ M A +++T + +R
Sbjct: 65 DLIERMEAADIKANEQTFSLLIKR 88
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 28 IFSPFTS---LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV-------- 76
IFS S P VV+ + L + +++ L RAE YK + +NCV
Sbjct: 468 IFSTMVSERSFVPDVVS-----YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522
Query: 77 ----ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
++ I D Y+ A G S PD+ +Y+ LI+ F +K +A +FE +
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCS----PDVITYSTLIHGFSLARKHDQAHELFETM 578
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+S G +PNA++Y+ L+ A + +MV G P + T
Sbjct: 579 ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVT 624
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +YN L+ + + +A +VFE +V+ GV PN +Y++LV + R+ A+
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFF 187
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMDEES 194
EMV+ GF PS +KV C++ +E
Sbjct: 188 GEMVDKGFKPSSTLYQKV-TECLKATGKEG 216
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G N+ +++A + F+ + S G PD+ +YN L+ F + K EA ++F+ +VS
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSK-GHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSR 686
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM-VNAGFAP 174
KP+ +S+++++D + A+ V + M + G +P
Sbjct: 687 QCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSP 726
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ +A+ F + S PD+ SY+ LI F K+ + A ++++ ++ L PN +Y+
Sbjct: 462 VHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYN 521
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + A V +EMV AG +P
Sbjct: 522 AFLNGLMRKGRIADAQGVYEEMVAAGCSP 550
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD A + FE + G +PD+ +YN+LI+ ++ EA +VF+ +
Sbjct: 696 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 755
Query: 134 SLGVKPNAMSYSLLVDA 150
L + P+ ++++L++A
Sbjct: 756 RLKLSPDPHAFNVLLEA 772
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+SR P + NC++ G D A++ F + G PD +Y L+Y F +
Sbjct: 579 ISRGCRP--NAVTYNCLLHGLCKESKPDEAHELFRKMVER-GCDPDRVTYTTLLYGFCNV 635
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K +A VF+ +VS G P+ ++Y+ L+ A + MV+ P
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKP 690
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
AL+ F K EAS++F +V G KP+A YS +V AH + A + EM
Sbjct: 238 KALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAV 297
Query: 170 AGFAP 174
AP
Sbjct: 298 ESKAP 302
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N +I G + DLD+ ++ A+ +S G+ PD+++ LI K K EA+ +
Sbjct: 170 SVVSFNTLINGYIRLGDLDKGFRLKTAMHAS-GVHPDVYTNTVLINGLCKESKMDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H + AL + +M+ G++P
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSP 274
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + + +A ++ ++S+G+KP +Y+++++ D K A ++ EM
Sbjct: 348 AYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEM 407
Query: 168 VNAGFAP 174
G P
Sbjct: 408 QRDGHVP 414
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ +YN LIY + +A + + G+KP+ ++Y+ L+D D + A
Sbjct: 271 GYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330
Query: 161 LSVIDEMV 168
+ M+
Sbjct: 331 FELRKRMI 338
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ D+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQSDVYTYSVLINGLCKASKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H NR A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D + D + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 162 SVIDEMV 168
M+
Sbjct: 332 EYRKRMI 338
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D L ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQT-FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + + +I G A +LDRA+Q E +G S + PD +Y++LI + ++ EA +
Sbjct: 228 VVSYSTIISGFARNQELDRAFQMKVEMIGKS--VLPDAVTYSSLIQGLCEQRRLTEACDM 285
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ ++++ + P+ +Y+ L++A+ D AL + DEM+ GF P T
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVT 335
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A LD AY+ + S G P I +YNALI L + EA + + +V
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRS-GFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGK 222
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GV P+ +SYS ++ N++ A + EM+ P T
Sbjct: 223 GVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVT 265
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN +I + KLK+T EA + G++PN ++++++++ + K
Sbjct: 13 GCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKET 72
Query: 161 LSVIDEMVNAGFAPSKET 178
V+ EM G+ P + T
Sbjct: 73 SEVLVEMSRKGYVPDEVT 90
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P++ +Y +LI + K A F+ + G+ PN +Y+ +++ A
Sbjct: 118 GLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEA 177
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V++EM +GF PS T + CV EE+ ++ + K
Sbjct: 178 YRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGK 222
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD +YN L+ + K +A + +V G+ PN ++Y+ L+++ +
Sbjct: 80 SRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNL 139
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A+ D+M G P++ T
Sbjct: 140 NRAMEFFDQMHVRGLCPNERT 160
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
AL+ F EA +VFE +++ KPN Y++++ H + A + EMV+
Sbjct: 388 ALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHV 447
Query: 171 GFAPSKET-LKKVRRRCVREMDEESNDRV 198
F P T L V+ MD E N+ +
Sbjct: 448 DFVPHTVTVLALVKALFTEGMDGELNEVI 476
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 36/156 (23%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G DLD ++ + S G+ PD+++Y ALI F + + A ++
Sbjct: 219 TVVTFNTLISGMCRARDLDAVDGLYKEM-SDVGVKPDVYTYGALIKGFCRTGRMENAVKM 277
Query: 129 FEHLVSLGVKPNAMSYSLLVDAH------------------------------LTN---- 154
F + GV PNA+ ++ L+DAH L N
Sbjct: 278 FNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCR 337
Query: 155 -RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
R+ KAA S+++EM NAG P K T + C ++
Sbjct: 338 ARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKD 373
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC LD A + + ++ D +Y ALI K + +A RV ++
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEK-EVSLDEVTYTALISGLSKAGRPVDAERVLREMMEA 424
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++P+ +Y++++DA D K ++ EM N G P
Sbjct: 425 ALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPG 464
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YNAL+ + + A + E + + G+KP+ ++Y+ L+D + A
Sbjct: 320 GVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMA 379
Query: 161 LSVIDEM 167
+ + +M
Sbjct: 380 MDIKQKM 386
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + + +I G +LDRA+Q + + G++PD +Y++LI ++++ EA +
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAVTYSSLIQGLCEMRRLTEACDLS 517
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ +G+ P+ +Y+ L++A+ D AL + DEM++ GF P T
Sbjct: 518 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 566
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SR P +V N +I G ++ +L + F + + G P++ +YN LI A+ K+
Sbjct: 208 SRVSP---NVYTYNILIRGFCSVGELQKGLGCFGEMERN-GCLPNVVTYNTLIDAYCKMG 263
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + + + S G++PN +SY+++++ K A +++EM GF P + T
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P + +Y ALI + K + A F+ + G++PN +Y+ L+D A
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 408
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+++EM +GF+PS T + CV E EE+ V+ + +K
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK 453
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV +I +L+RA + F+ + GL P+ +Y LI F + EA R+
Sbjct: 353 SVVTYTALINSMCKARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRI 411
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G P+ ++Y+ + H + AL V+ EMV G AP
Sbjct: 412 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA 63
L R F ++ E + G +ME P VV + TL Y ++ + A
Sbjct: 220 LIRGFCSVGELQKGLG-CFGEMER-----NGCLPNVVT-----YNTLIDAYCKMGRIDEA 268
Query: 64 EPPYKSVAA---------INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
KS+++ N +I G + A++ E +G G TPD +YN L+
Sbjct: 269 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYK-GFTPDEVTYNTLLN 327
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ K +A + +V GV P+ ++Y+ L+++ R+ A+ D+M G P
Sbjct: 328 GYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRP 387
Query: 175 SKET 178
++ T
Sbjct: 388 NERT 391
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ AY+ + S G +P + +YNA I+ L++ EA V + +V G+ P+ +SYS
Sbjct: 405 LNEAYRILNEMTES-GFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 463
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + A + EMV G +P T
Sbjct: 464 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 496
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
ALI F EA RVFE +V KP Y++++ H + A ++ EM+++
Sbjct: 619 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 678
Query: 171 GFAPSKETLKKVRRRCVRE-MDEESNDRV 198
GF P T+ + + +E M+EE ++ +
Sbjct: 679 GFVPHTVTVITLIKALFKEGMNEEMSEVI 707
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
L+ SR+G L+ Y L ++ + P SV N I G + ++ A +
Sbjct: 395 LIDGFSRQGL--LNEAYRILNEMTESGFSP---SVVTYNAFIHGHCVLERMEEALGVVQE 449
Query: 96 VGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
+ GL PD+ SY+ +I F G+L + F+ + +V GV P+A++YS L+
Sbjct: 450 MVEK-GLAPDVVSYSTIISGFCRKGELDRAFQMK---QEMVEKGVSPDAVTYSSLIQGLC 505
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
R A + EM++ G P + T
Sbjct: 506 EMRRLTEACDLSQEMLDMGLPPDEFT 531
>gi|357154778|ref|XP_003576898.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46610-like [Brachypodium distachyon]
Length = 623
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+L C+ + A F+ + GL PD+ SY AL+ A K K EA RV++H++
Sbjct: 418 NSVLLACSRAAETSAAVNIFKRMIDE-GLKPDVVSYGALLSALEKGKLYDEALRVWKHML 476
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+G+ PN +Y++LV ++ + +V+ +M+ A P+ T + C R
Sbjct: 477 KVGIDPNLHAYTILVSIYIGKGNHDMVDTVLRDMLYAKIEPTVVTFNAIISACAR 531
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +N+++ A + +T A +F+ ++ G+KP+ +SY L+ A + A
Sbjct: 409 GLKPGSREWNSVLLACSRAAETSAAVNIFKRMIDEGLKPDVVSYGALLSALEKGKLYDEA 468
Query: 161 LSVIDEMVNAGFAPS 175
L V M+ G P+
Sbjct: 469 LRVWKHMLKVGIDPN 483
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G +PN +SY L L++A + +
Sbjct: 341 NHLIWLMGKAKKWWAALEIYEDLLEKGPQPNNLSYELIMSHFNILLNAAKRRGIWRWGVR 400
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++D+M G P V C R
Sbjct: 401 LLDKMQEKGLKPGSREWNSVLLACSR 426
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD+ + +E L R E + NC++ + + R + + G++P I ++
Sbjct: 121 LDATFAVVEYLKRREGSSVNQFVYNCLLGAVKSCGEFGRIGDVLTDMEAQ-GVSPSIVTF 179
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
N L+ + + K + RV+ + + G+ P A +YS ++ A+ + D AAL
Sbjct: 180 NTLMSIYVEQGKIDDVFRVYHDIDARGLVPTAATYSTVMSAYKSAGDAYAAL 231
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L N R V N +I G + ++DR + + + S L+PD+ +Y ++I
Sbjct: 257 FELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIIS 316
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ KL K +AS +F +++S G+KPNA ++++L++ D +A ++ +EM+ G P
Sbjct: 317 GYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPP 376
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +++A F + SS G+ P+ ++N LI FGK+ A ++E ++ L
Sbjct: 314 IISGYCKLGKMEKASILFNNMISS-GIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLL 372
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P+ ++++ L+D H + +L + E+ +P++ T
Sbjct: 373 GCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYT 415
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I F K EA+ + + KP+ ++Y++L+ H A+S+ + M+
Sbjct: 451 YNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRML 510
Query: 169 NAGFAPSKETLKKV------------RRRCVREMDEESNDRVEALAKKFDIRMNTE 212
G AP T+ + R ++ E+ N +++L + +R NT+
Sbjct: 511 GTGCAPDSITMTSLISCLLKAGMPNEAYRIMQIASEDFNLGLKSLKRNVPLRTNTD 566
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G DLD+ ++ A+ +S G+ PD+++Y+ LI K K EA+ +
Sbjct: 170 SVVSFNTLMNGYIRQGDLDKGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSP 274
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N +D A + ++ + S L+PD+ +YN LIY K +A + + G+KP
Sbjct: 252 CKN-GKVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKP 309
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+ ++Y+ L+D + D + A M+
Sbjct: 310 DKITYTTLIDGSCKDGDLETAFEYRKRMI 338
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP++ +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G PS
Sbjct: 408 QRDGHVPS 415
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 93 FEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
F+A+ +GL P + S+N L+ + G L K F R+ + + GV+P+ +YS+L++
Sbjct: 159 FDAI-RKWGLRPSVVSFNTLMNGYIRQGDLDKGF---RLKSAMHASGVQPDVYTYSVLIN 214
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A + EM++ G P+ T
Sbjct: 215 GLCKESKMDEANELFXEMLDKGLVPNGVT 243
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 174 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 232
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ V +M++ +P
Sbjct: 233 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSP 278
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 155 DIRVALSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 213
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 214 SVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 247
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ +SY+
Sbjct: 261 VDLAMEVYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYT 319
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 320 TLIDGCCKEGDLETAFEHRKRMIQ 343
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 321 LIDGCCKEGDLETAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSIDAEKMLREMLSV 379
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G++P+ +Y+++++ D ++ EM G PS
Sbjct: 380 GLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 419
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 238 VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESAR 297
Query: 162 SVIDEMVNAGFA 173
V DEM AGFA
Sbjct: 298 KVFDEMPGAGFA 309
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F + G+TPD+ +YN L+ A+ + A +VF+ +
Sbjct: 246 NTLIWGFGLCKKMEAALRVFGDM-KDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMP 304
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G N++SY++++ ++ + A+ + EM G S++T
Sbjct: 305 GAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKT 349
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + P+ + ALI A+GK E+ ++F + LG+ A+SY+ ++ A L +
Sbjct: 165 SFSIAPEEATVAALIAAYGKANIPQESVKLFRLMPDLGIARTALSYNAVLKAILCRGREA 224
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ P T
Sbjct: 225 MARRIYNAMIADAVTPDLST 244
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G+ PD +SYN +IYA+G+ + EASR+
Sbjct: 640 SAATYNSLMHMYSRLGDCEKCEAILTEIKSS-GMRPDRYSYNTVIYAYGRKGQMKEASRL 698
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + GVKP+ ++Y++ + +++ N + A+ ++ +V G P++ T +
Sbjct: 699 FSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSI 752
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +I G I +D A T+ + + G +P++ +YNALI G K E VF
Sbjct: 361 VVTYTTLISGLDRIGKIDAALATYSEMVRN-GCSPNLCTYNALIKMHGVRGKFTEMMIVF 419
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L S G P+ ++++ L+ N V EM AG+ P ++T
Sbjct: 420 DDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 468
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++YN LI + EA+++F+ + + G +P+ ++++ L+D + R + A
Sbjct: 251 GIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEA 310
Query: 161 LSVIDEMVNAGFAPS 175
+ V+ +M NAG PS
Sbjct: 311 IGVLKKMENAGCTPS 325
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI ++ K A + +V G PN +Y+ L+ H
Sbjct: 356 GMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEM 415
Query: 161 LSVIDEMVNAGFAP 174
+ V D++ +AG+ P
Sbjct: 416 MIVFDDLRSAGYVP 429
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q F+ + ++ G PD ++N+L+ +GK ++ EA V + +
Sbjct: 260 NTLISCCRRRGLYREAAQMFDEMKAA-GFEPDKVTFNSLLDVYGKARRHEEAIGVLKKME 318
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G P+ ++Y+ L+ A++ + + AL + EM G P
Sbjct: 319 NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 359
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLY------------PLVVACSRKGFET 49
G +Q A +T N Y + +E+ S+ L+ C R+G
Sbjct: 214 GGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYR 273
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG-----SSFGLTP 104
+ F + EP N ++ +++ R ++ EA+G + G TP
Sbjct: 274 EAAQMFDEMKAAGFEP---DKVTFNSLL----DVYGKARRHE--EAIGVLKKMENAGCTP 324
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ +YN+LI A+ K EA + + + G+KP+ ++Y+ L+ AAL+
Sbjct: 325 SVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATY 384
Query: 165 DEMVNAGFAPS 175
EMV G +P+
Sbjct: 385 SEMVRNGCSPN 395
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR--DQK 158
G+ PDI +YNA++ A + + +A ++F + KP+ +SYS L+ A+ + D+
Sbjct: 496 GIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKM 555
Query: 159 AALS 162
ALS
Sbjct: 556 KALS 559
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 424 SAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 483
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + M+ AG P T V
Sbjct: 484 QAMEIYKRMIEAGIYPDISTYNAV 507
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 238 VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESAR 297
Query: 162 SVIDEMVNAGFA 173
V DEM AGFA
Sbjct: 298 KVFDEMPGAGFA 309
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F + G+TPD+ +YN L+ A+ + A +VF+ +
Sbjct: 246 NTLIWGFGLCKKMEAALRVFGDM-KDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMP 304
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G N++SY++++ ++ + A+ + EM G S++T
Sbjct: 305 GAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKT 349
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + P+ + ALI A+GK E+ ++F + LG+ A+SY+ ++ A L +
Sbjct: 165 SFSIAPEEATVAALIAAYGKANIPQESVKLFRLMPDLGIARTALSYNAVLKAILCRGREA 224
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ P T
Sbjct: 225 MARRIYNAMIADAVTPDLST 244
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Query: 28 IFSPFTS---LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV-------- 76
IFS S + P VV+ + L + +++ L RAE YK + +NCV
Sbjct: 143 IFSTMVSERSVVPDVVS-----YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 197
Query: 77 ----ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
++ I D Y+ + G S PD+ +Y+ LI+ F +K +A +FE +
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCS----PDVITYSTLIHGFSLARKHDQAHELFEAM 253
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+S G +PNA++Y+ L+ A + +MV G P K T
Sbjct: 254 ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ +A+ F + S + PD+ SY+ LI F K+ + A ++++ ++ L PN +Y+
Sbjct: 137 VHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYN 196
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + A V +EM++AG +P
Sbjct: 197 AFLNGLMRKGRIADAQGVYEEMISAGCSP 225
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G N+ +++A + F+ + S G PD+ +YN L+ F + K EA ++F+ +VS
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSK-GHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSR 361
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM-VNAGFAP 174
KP+ +S+++++D + A+ V + M + G +P
Sbjct: 362 ECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSP 401
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD A + FE + G +PD+ +YN+LI+ ++ EA +VF+ +
Sbjct: 371 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 430
Query: 134 SLGVKPNAMSYSLLVDA 150
L + P+ ++++L++A
Sbjct: 431 RLKLSPDPHAFNVLLEA 447
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+SR P + NC++ G D A++ F + G PD +Y L+Y F +
Sbjct: 254 ISRGCRP--NAVTYNCLLHGLCKESKPDEAHELFRKMVER-GCDPDKVTYTTLLYGFCNV 310
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
K +A VF+ +VS G P+ ++Y+ L+
Sbjct: 311 GKIEQAVEVFDEMVSKGHDPDVVAYNCLL 339
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SYN+L+ + K KK +A +F +VS V P+ +SYS+L+D + A + +
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182
Query: 167 MVNAGFAPSKET 178
M++ P+ T
Sbjct: 183 MIDLNCVPNVTT 194
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E +P Y V+ +C+R G +E L S++ ++ R E + N ++ CAN
Sbjct: 205 KEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEM----RHEGIQPDIITYNTLLNACAN 260
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A F + G+ PDI +Y L+ FGKL K + S + + + S G P+
Sbjct: 261 RGLGDEAEMVFRTMNEG-GMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDIS 319
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
SY++L++A+ + D + A+ V +M A P+ T
Sbjct: 320 SYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVT 355
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ +++ +FE + + GV + SY
Sbjct: 121 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSY 180
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++++ + + +L +++ M PS T V C R
Sbjct: 181 TALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCAR 224
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC+ +G + F+ N P + ++ + L++ + + +
Sbjct: 254 LLNACANRGLGDEAEMVFRTMNEGGMVP---DITTYRNLVETFGKLNKLEKVSELLKEME 310
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
SS G PDI SYN L+ A+ A VF + PNA++YS+L++ +
Sbjct: 311 SS-GNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLY 363
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMEDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ +++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + A + DEM+N G P+ T
Sbjct: 214 NGLCKESKMEDANELFDEMLNNGLVPNGVT 243
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A +M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKKMI 338
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + + +I G +LDRA+Q + + G++PD +Y++LI ++++ EA +
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAVTYSSLIQGLCEMRRLTEACDLS 313
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ +G+ P+ +Y+ L++A+ D AL + DEM++ GF P T
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 362
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SR P +V N +I G ++ +L + F + + G P++ +YN LI A+ K+
Sbjct: 4 SRVSP---NVYTYNILIRGFCSVGELQKGLGCFGEMERN-GCLPNVVTYNTLIDAYCKMG 59
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + + + S G++PN +SY+++++ K A +++EM GF P + T
Sbjct: 60 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P + +Y ALI + K + A F+ + G++PN +Y+ L+D A
Sbjct: 145 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 204
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+++EM +GF+PS T + CV E EE+ V+ + +K
Sbjct: 205 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK 249
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA 63
L R F ++ E + G +ME P VV + TL Y ++ + A
Sbjct: 16 LIRGFCSVGELQKGLG-CFGEMER-----NGCLPNVVT-----YNTLIDAYCKMGRIDEA 64
Query: 64 EPPYKSVAA---------INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
KS+++ N +I G + A++ E +G G TPD +YN L+
Sbjct: 65 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYK-GFTPDEVTYNTLLN 123
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ K +A + +V GV P+ ++Y+ L+++ R+ A+ D+M G P
Sbjct: 124 GYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRP 183
Query: 175 SKET 178
++ T
Sbjct: 184 NERT 187
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+RA + F+ + GL P+ +Y LI F + EA R+ + G P+ ++Y
Sbjct: 165 NLNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + H + AL V+ EMV G AP
Sbjct: 224 NAFIHGHCVLERMEEALGVVQEMVEKGLAP 253
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ AY+ + S G +P + +YNA I+ L++ EA V + +V G+ P+ +SYS
Sbjct: 201 LNEAYRILNEMTES-GFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 259
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + A + EMV G +P T
Sbjct: 260 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 292
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
GL PD+ SY+ +I F G+L + F+ + +V GV P+A++YS L+ R
Sbjct: 250 GLAPDVVSYSTIISGFCRKGELDRAFQMK---QEMVEKGVSPDAVTYSSLIQGLCEMRRL 306
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + EM++ G P + T
Sbjct: 307 TEACDLSQEMLDMGLPPDEFT 327
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
ALI F EA RVFE +V KP Y++++ H + A ++ EM+++
Sbjct: 415 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 474
Query: 171 GFAPSKETLKKVRRRCVRE-MDEESNDRV 198
GF P T+ + + +E M+EE ++ +
Sbjct: 475 GFVPHTVTVITLIKALFKEGMNEEMSEVI 503
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|357140623|ref|XP_003571864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Brachypodium distachyon]
Length = 751
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI+ FG +K A RVF + GV P+ +Y+ L++A + N D ++A
Sbjct: 241 GVAPDLSTYNTLIWGFGLSEKMEAAVRVFGDMKGHGVTPDVTTYNNLINAWVRNGDLESA 300
Query: 161 LSVIDEMVNAGF 172
V DEM AGF
Sbjct: 301 RKVFDEMPGAGF 312
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F + G+TPD+ +YN LI A+ + A +VF+ +
Sbjct: 250 NTLIWGFGLSEKMEAAVRVFGDM-KGHGVTPDVTTYNNLINAWVRNGDLESARKVFDEMP 308
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G + N++SY++++ ++ + + A+ + EM G S++T
Sbjct: 309 GAGFERNSVSYNVMIKGYVEAKKVEEAVGLFKEMGEKGLRSSEKT 353
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+F ++PD + AL+ A+GK + EA ++F + LG+ A+SY+ ++ A L +
Sbjct: 169 AFSVSPDEATVAALVAAYGKARIPQEAVKLFRLMPELGITRTALSYNAVLKAILCRGREA 228
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ G AP T
Sbjct: 229 MARRIYNAMIADGVAPDLST 248
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D ++N+LI K A + + GV + +S++LLVD+ L + A + +
Sbjct: 499 DKLAFNSLIRGHAKEGVLEAAQEILAIMTRRGVPTDPISHTLLVDSFLKKNEPADAKTAL 558
Query: 165 DEMVNAGFAPSKETLKKV 182
D M+ G PS K V
Sbjct: 559 DSMMEQGHLPSPALFKSV 576
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 29 FSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
SP Y V+ AC+R G +E L ++ ++ R E + N ++ CA
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEM----RHEGIQPDIVTYNTLLSACAIRGL 262
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
D A F + G+ PD+ +Y+ L+ FGKL++ + S + + S G P+ SY+
Sbjct: 263 GDEAEMVFRTMNDG-GIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYN 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++A+ + K A+ V +M AG P+ T
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANT 354
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + VF+ + S GV + SY
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++A+ N + +L ++D M N +PS T V C R
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACAR 223
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+S G PDI SYN L+ A+ K EA VF + + G PNA +YS+L++
Sbjct: 309 ASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP+ ++Y+ L+ FG+ + + ++F + S P+A +Y++L++ K
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
+++ +MV P ET + + C
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFAC 432
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
Query: 25 MEEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+EE P Y ++ AC + G Q + P K+ + A
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALY 473
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
+ A+ T VGS+ P I +Y++L+Y+F + E+ + LV G+ N +
Sbjct: 474 EEALVAFNTMHEVGSN----PSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++ ++A+ + A+ +M + P + TL+ V
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 31 PFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P+ Y L+V C RK + ++ F E + P + A + I G I +D+
Sbjct: 560 PWIKHYTLLVKQLCKRK--RSAEACNFLAEMVREGFLP--DIVAYSAAIDGFVKIKAVDQ 615
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F + + G PD+ +YN LI F K+K+ EA + + +V+ G+ P+ ++Y+LL+
Sbjct: 616 ALEIFRDICAR-GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D N D A + MV P+
Sbjct: 675 DGWCKNGDIDQAFHCLSRMVGKEREPN 701
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +Y+A I F K+K +A +F + + G P+ ++Y+ L++ + A
Sbjct: 592 GFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEA 651
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEMV G PS T
Sbjct: 652 HDILDEMVAKGLVPSVVT 669
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 38 LVVACSRKGFETLDSVYFQLENL--SRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-E 94
L+ A S+ G ++D V +L+ + S EP ++ + V+ N D+A F E
Sbjct: 205 LLEAISKSG--SIDLVEMRLKEMCDSGWEPDKYTLTS---VLQAYCNSRKFDKALSVFNE 259
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
G + D H + L+ F K + +A + E + LG++ N ++ +L+ +
Sbjct: 260 IYGRGW---VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQ 316
Query: 155 RDQKAALSVIDEMVNAGFAP 174
AL + +M +GFAP
Sbjct: 317 SRVDKALQLFKKMQKSGFAP 336
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I C+ +LD A FE + +S PD+ +YNA++ G+ K +A R+F
Sbjct: 135 VITYNTLISACSQGSNLDDAVAVFEEMMAS-ECRPDLWTYNAMVSVHGRCGKAQDAERMF 193
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
LV G KP+A++Y+ L+ A D V +E+V AGF
Sbjct: 194 RELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGF 236
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCV------ILGCANIWDLDR---AYQTFEAVG 97
+ T+ +Y ++ L A Y + A+ C + ++ +DR A + E +
Sbjct: 243 YNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMA 302
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL P + +++ALI A+ K + EA R F H+V+ GVKP+ ++Y +++D + D
Sbjct: 303 DA-GLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDM 361
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI--RMNTENRK 215
+ +++ M+N G+ P L +V + + +E D +EA+ + ++ +MN +
Sbjct: 362 RKLMALYQTMMNDGYRPDN-ALYQVMLAALAKGNE--YDEIEAVVQDMEVVCQMNPQLVS 418
Query: 216 NILFNLE 222
+IL E
Sbjct: 419 SILIKAE 425
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 38 LVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ ACS +G D+V F+ S P + A+ V C D +R ++
Sbjct: 141 LISACS-QGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFREL--- 196
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G PD +YN+L+YAF K RV E LV G K + ++Y+ ++ +
Sbjct: 197 -VEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGR 255
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
AL + DEM G P T
Sbjct: 256 LDLALGLYDEMRALGCTPDAVT 277
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA- 159
G D +YN +I+ +GK+ + A +++ + +LG P+A++Y++L+D+ L D+ +
Sbjct: 235 GFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDS-LGKMDRISD 293
Query: 160 ALSVIDEMVNAGFAPS 175
A V++EM +AG P+
Sbjct: 294 AGKVLEEMADAGLKPT 309
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 88 RAYQTFEAVGSSF---------GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
RA A GS+F GL PD+ +YN LI A + +A VFE +++ +
Sbjct: 108 RAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECR 167
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
P+ +Y+ +V H + A + E+V GF P T + +E D ++ +RV
Sbjct: 168 PDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERV 227
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + SY +L+ A GK K +A ++FE + S G + N Y +L+ + + A
Sbjct: 829 GLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKA 888
Query: 161 LSVIDEMVNAGFAPSKETL 179
++ M G P+ T+
Sbjct: 889 EQLLASMKEDGIEPTIATM 907
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G PD+ N L+ + G KT E V+ ++ G++PN +Y+ L+ + N
Sbjct: 759 GFEPDLTILNTLLLMYTGNGNFDKTVE---VYHSILEAGLEPNEDTYNTLIVMYSRNLRP 815
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
+ ++++EM G P E+ K +
Sbjct: 816 EEGFTLLNEMGKKGLTPKLESYKSL 840
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A GL+PD +Y+ +I GK A ++F +V G PN ++Y++++D
Sbjct: 457 YQRMQA----GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ ++AL + +M NAGF P K T
Sbjct: 513 LHAKARNYQSALKLYRDMQNAGFEPDKVT 541
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G KP+ ++Y L+D H A
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 161 LSVIDEMVNAGFAP 174
+ + M G +P
Sbjct: 454 MDMYQRMQAGGLSP 467
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++A+ + GL P++ + N+L+ F ++ K EA + +++++LG++P+ +Y
Sbjct: 589 NVEKAWQWYQAMLHA-GLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 647
Query: 145 SLLVDAHLTNRDQ 157
+LL+ R +
Sbjct: 648 TLLLSCCTDGRSK 660
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 419 MNVFNQMQEAGCKPDRVT 436
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 31 PFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P+ Y L+V C RK + ++ F E + P + A + I G I +D+
Sbjct: 520 PWIKHYTLLVKQLCKRK--RSAEACNFLAEMVREGFLP--DIVAYSAAIDGFVKIKAVDQ 575
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F + + G PD+ +YN LI F K+K+ EA + + +V+ G+ P+ ++Y+LL+
Sbjct: 576 ALEIFRDICAR-GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D N D A + MV P+
Sbjct: 635 DGWCKNGDIDQAFHCLSRMVGKEREPN 661
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +Y+A I F K+K +A +F + + G P+ ++Y+ L++ + A
Sbjct: 552 GFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEA 611
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEMV G PS T
Sbjct: 612 HDILDEMVAKGLVPSVVT 629
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 41 ACSRKGFETLDSVYFQLENL--SRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVG 97
A S+ G ++D V +L+ + S EP ++ + V+ N D+A F E G
Sbjct: 168 AISKSG--SIDLVEMRLKEMCDSGWEPDKYTLTS---VLQAYCNSRKFDKALSVFNEIYG 222
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ D H + L+ F K + +A + E + LG++ N ++ +L+ +
Sbjct: 223 RGW---VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRV 279
Query: 158 KAALSVIDEMVNAGFAP 174
AL + +M +GFAP
Sbjct: 280 DKALQLFKKMQKSGFAP 296
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
FTS+ L C + E ++ + N+ AE ++ + N +I A + A+
Sbjct: 331 FTSIIHLYSVCGQ--VENCEAAF----NMMIAEGLKPNIVSYNALIGAYAARGMDNEAHL 384
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
F + + G PDI SY +L+ A+G+ +K +A ++F+ + +KPN +SY+ L+DA+
Sbjct: 385 FFNEIKQN-GFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAY 443
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+N A+ ++ EM G P+ ++ + C R + D V A+ I++NT
Sbjct: 444 GSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNT 503
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +YNA+I A G+ + A + + ++ + P+ +Y+ L++A ++ + K AL+V
Sbjct: 184 PDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 243
Query: 164 IDEMVNAGFAP 174
+M G P
Sbjct: 244 CKKMTENGVGP 254
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N VI + D+A + F ++ TPD+ ++ ++
Sbjct: 278 YFELMKGTHIRP---DTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSI 334
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + F +++ G+KPN +SY+ L+ A+ A +E+ GF
Sbjct: 335 IHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGF 394
Query: 173 AP 174
P
Sbjct: 395 RP 396
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +T +A +F + KP+ +Y+ +++AH + A++++D+M+
Sbjct: 154 YNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDML 213
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T + C
Sbjct: 214 RAAIPPSRSTYNNLINAC 231
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N +++ GK K ++F +++ G N +YS+L+ L++ + + L V+ M +
Sbjct: 717 NQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMED 776
Query: 170 AGFAPSKE 177
AG PSKE
Sbjct: 777 AGIHPSKE 784
>gi|116791998|gb|ABK26193.1| unknown [Picea sitchensis]
Length = 262
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G N LD+AY + + G+ D +YNALI L K EA+++FE
Sbjct: 66 AVYTCMITGYGNTKKLDKAYVLLQEMKEK-GIPHDCRTYNALIKVMMVLHKPDEATKLFE 124
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G +P +Y++L+ + R+ + ++ D+M G P
Sbjct: 125 KMSQCGFQPTIHTYNMLMKLYFRARNPEMGFAIWDQMARNGCCP 168
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 6 RAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSR 62
RA L + E A +M+E SP + V C G+ + LD Y L+ +
Sbjct: 38 RALSKLQKMEEA-SKFFAEMQEHGSPLDAA---VYTCMITGYGNTKKLDKAYVLLQEMKE 93
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
P+ N +I + D A + FE + S G P IH+YN L+ + + +
Sbjct: 94 KGIPH-DCRTYNALIKVMMVLHKPDEATKLFEKM-SQCGFQPTIHTYNMLMKLYFRARNP 151
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-AP 174
+++ + G P+ SY++ + + + A + I+ M++ G AP
Sbjct: 152 EMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACAYIESMIDKGMKAP 204
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G W ++ AY+ F+ + G P SYN LI F K K A V
Sbjct: 78 NVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEVSYNTLIDGFCKKKDLVAAKDV 136
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ +V PN ++Y+ L+D + +AA V+D MV G P+ T
Sbjct: 137 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DL A F+ + S P++ +Y LI K K A+ V + +V
Sbjct: 118 NTLIDGFCKKKDLVAAKDVFDKMVRS-NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV 176
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV PN +YS L+D R A ++++MV G AP+
Sbjct: 177 KKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 218
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 36/50 (72%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+TP++ +Y+ LI F K+++ EA ++ E +V+ G+ P ++Y++L+++
Sbjct: 179 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNS 228
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ +YN LI K + A +F+ + G P +SY+ L+D +D AA
Sbjct: 75 INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 134
Query: 162 SVIDEMVNAGFAPS 175
V D+MV + P+
Sbjct: 135 DVFDKMVRSNCVPN 148
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A T E + + G+ PD YN ++ + +K EA +FE +V + PN ++Y+
Sbjct: 25 IDDALATVEEMATR-GIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYN 83
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
L++ + A + EM G+ P++
Sbjct: 84 TLINGLCKAWRIETAYELFKEMAGKGYVPTE 114
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G W ++ AY+ F+ + G P SYN LI F K K A V
Sbjct: 183 NVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEVSYNTLIDGFCKKKDLVAAKDV 241
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ +V PN ++Y+ L+D + +AA V+D MV G P+ T
Sbjct: 242 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 291
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DL A F+ + S P++ +Y LI K K A+ V + +V
Sbjct: 223 NTLIDGFCKKKDLVAAKDVFDKMVRS-NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV 281
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV PN +YS L+D R A ++++MV G AP+
Sbjct: 282 KKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 323
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 36/50 (72%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+TP++ +Y+ LI F K+++ EA ++ E +V+ G+ P ++Y++L+++
Sbjct: 284 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNS 333
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 57 LENLSRAEPP----YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
+E ++R PP Y + C +D A T E + + G+ PD YN +
Sbjct: 103 IEKMARYAPPDALTYGPIVERLC------KTKRIDDALATVEEMATR-GIKPDAFIYNFV 155
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + +K EA +FE +V + PN ++Y+ L++ + A + EM G+
Sbjct: 156 LSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY 215
Query: 173 APSK 176
P++
Sbjct: 216 VPTE 219
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ +YN LI K + A +F+ + G P +SY+ L+D +D AA
Sbjct: 180 INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 239
Query: 162 SVIDEMVNAGFAPS 175
V D+MV + P+
Sbjct: 240 DVFDKMVRSNCVPN 253
>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
Length = 546
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 73 INCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
++C IL G + DLD A + + + + +G+ PD+ +Y ++ A+ A ++F+
Sbjct: 205 VSCNILLKGLVGMGDLDAALKVLDEM-TGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFD 263
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+V+ G +P+A Y++LVD + + A ++DEM AG P++ T V C +E
Sbjct: 264 DIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKE 322
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL+ A Q F+ + +S G PD Y L+ + K +A+R+ + + + GVKPN ++Y
Sbjct: 254 DLEGAQQLFDDIVAS-GRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTY 312
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S++++A A + EM+ AG+ P KV
Sbjct: 313 SVVIEACCKEGKSIEACDLTREMLGAGYVPDTPLCAKV 350
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI + + EA RV++ +V +PNAM+Y L+
Sbjct: 408 GFVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEG 467
Query: 161 LSVIDEMVNAGFAPSK 176
++ EMV G PSK
Sbjct: 468 YALFKEMVAKGCTPSK 483
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 23/93 (24%)
Query: 69 SVAAINCVILG-CAN--------IWD--LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
S+ N +I+G C N +WD ++R Y+ P+ +Y ALI F
Sbjct: 412 SLLTYNSLIIGLCENGELQEAGRVWDDMVERRYE------------PNAMTYEALIKGFC 459
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
K+ K+ E +F+ +V+ G P+ Y LVD+
Sbjct: 460 KIGKSNEGYALFKEMVAKGCTPSKFLYQALVDS 492
>gi|145476181|ref|XP_001424113.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391176|emb|CAK56715.1| unnamed protein product [Paramecium tetraurelia]
Length = 337
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ C N DL+R +Q + S + D +YN LI G+ K+ EA +FE +
Sbjct: 163 NCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMK 222
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+G+KPN +S++ L+D+ + A +EM
Sbjct: 223 QIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEM 256
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL R F LNE + + I ++EI + L+ C RK + L+ E +
Sbjct: 173 GDLNRGFQLLNEMKQSQS---IQLDEI-----TYNTLIKGCGRK--KRLNEAISLFEEMK 222
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ ++ N ++ C ++ A++ FE + +G+ PD +Y+ L+ K
Sbjct: 223 QIGIKPNRIS-FNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTYSILVNGI----K 277
Query: 122 TFEASR--------VFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
T ++R + E + G KP+ + Y+ L+DA + + + + + EM N
Sbjct: 278 TNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKN 334
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSP 274
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAF 331
Query: 162 SVIDEMVN 169
M+
Sbjct: 332 EYRKRMIK 339
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D +Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++
Sbjct: 345 DXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404
Query: 165 DEMVNAGFAPS 175
EM G+ PS
Sbjct: 405 KEMQRDGYVPS 415
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F A+ +S GL PD+ SY +L+ ++G+ ++ +A VFE + +KPN +SY+ ++
Sbjct: 366 ALSVFNAIKNS-GLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMI 424
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
DA+ +N A+ V+ EM G P+ ++ + C R + + D V A++ I+
Sbjct: 425 DAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIK 484
Query: 209 MNT 211
+NT
Sbjct: 485 LNT 487
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N +I + ++A F+++ PD+ ++ ++
Sbjct: 262 YFELMKGTNIRP---DTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSI 318
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + VF +V+ G+KPN +SY+ L+ A+ ++ K ALSV + + N+G
Sbjct: 319 IHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGL 378
Query: 173 AP 174
P
Sbjct: 379 RP 380
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N +I+G A D++RA +F A+ GL+P + A+I A G +T EA +FE L
Sbjct: 259 LNDIIVGFAKSGDVNRA-MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEEL 317
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P +Y+ L+ ++ K A S++ EM +GF+P + T
Sbjct: 318 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 363
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+++Q + +S G++PD H YN +I FGK A F+ + GV+P+A++++ L
Sbjct: 414 KSFQVLREMRNS-GVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTL 472
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+D H + A + + M +G +P T
Sbjct: 473 IDCHCKSGHHNKAEELFEAMQESGCSPCTTT 503
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
A + VI N + A FE + GL P +YNAL+ + K +A +
Sbjct: 291 TATLVAVITALGNAGRTEEAEAIFEELKEG-GLMPRTRAYNALLKGYVKTGSLKDAESIV 349
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G P+ +YSLL+DA+ ++A V+ EM +G P+ ++
Sbjct: 350 SEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRI 402
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD H+Y+ LI A+ + A V + + + GV+PN+ +S ++ ++ + +
Sbjct: 356 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKS 415
Query: 161 LSVIDEMVNAGFAPSKE 177
V+ EM N+G +P +
Sbjct: 416 FQVLREMRNSGVSPDRH 432
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FEA+ S G +P +YN +I +FG+ ++ + + + S G+ N ++Y+
Sbjct: 483 NKAEELFEAMQES-GCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 541
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LVD + + K A+ ++ M + G PS
Sbjct: 542 LVDIYGQSGRFKDAIECLEVMKSVGLKPS 570
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
V S GL P YNALI A+ + + +A F + + G+KP+ + + L++A +R
Sbjct: 561 VMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 620
Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
A SV+ M P T + + +R E D+V A+ ++ + T +RK
Sbjct: 621 RDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR---VEKFDKVPAVYEEMTLSGCTPDRK 677
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + N+LI AFG+ ++ EA V +++ +KP+ ++Y+ L+ A +
Sbjct: 601 GLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKV 660
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+V +EM +G P ++ + + R +R M+
Sbjct: 661 PAVYEEMTLSGCTPDRKA-RAMLRSALRYME 690
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSY 109
+++YF E + + PP +V + ++ G N+ L+ A F + +G + + P+ ++
Sbjct: 229 EAMYFFSEMVDQGIPP--NVVTYSSILHGFCNLGQLNEATSLFKQMIGRN--VMPNTVTF 284
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
L+ K EA RVFE + GV+P+A +YS L+D + A + D MV
Sbjct: 285 TILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVG 344
Query: 170 AGFAPS 175
GFAPS
Sbjct: 345 KGFAPS 350
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S+ EP + N +I G N L+ A + F + G+ P + +Y +I K
Sbjct: 450 SKIEP---HICIYNILIQGMCNFGKLEAARELFSNLFVK-GIQPSVVTYTVMISGLLKEG 505
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ EA +F +V G PN+ +Y++ + L N D A+ +I+EMV GF+ T +
Sbjct: 506 LSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQ 565
Query: 181 KVRRRCVREMDEESNDRV 198
+ +D ESND +
Sbjct: 566 ML-------LDLESNDEI 576
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 51 DSVYFQLENLSRA-----EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD 105
D V+F L + +P + + + + A I D A + F+ +G G P
Sbjct: 120 DHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIID---AVKLFDEIGK-MGFAPS 175
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
+ +Y +I K+ T A ++ + + G KP+ ++Y+ ++D+ +R A+
Sbjct: 176 LITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFS 235
Query: 166 EMVNAGFAPSKETLKKV 182
EMV+ G P+ T +
Sbjct: 236 EMVDQGIPPNVVTYSSI 252
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FE + + G+ PD ++Y+AL+ + + EA ++F+ +V G P+ Y++L+
Sbjct: 300 ARRVFEMMTEN-GVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILI 358
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ H +R A +++ EM + P T
Sbjct: 359 NGHCKSRRLNEAKTLLSEMYDRDLTPDTVT 388
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I A Q + + G PD+ +YN +I + K ++ EA F +V
Sbjct: 182 IIKGLCKIGHTTNALQLLKKMEEK-GCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ 240
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN ++YS ++ A S+ +M+ P+ T
Sbjct: 241 GIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVT 283
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +Y+ L+ F + + A ++F+ + S G+ P++++YS+L+D + A
Sbjct: 382 LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAF 441
Query: 162 SVIDEMVNAGFAP 174
++ M + P
Sbjct: 442 RLLKAMQESKIEP 454
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N +I+G A D++RA +F A+ GL+P + A+I A G +T EA +FE L
Sbjct: 330 LNDIIVGFAKSGDVNRA-MSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEEL 388
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P +Y+ L+ ++ K A S++ EM +GF+P + T
Sbjct: 389 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 434
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+++Q + +S G++PD H YN +I FGK A F+ + GV+P+A++++ L
Sbjct: 485 KSFQVLREMRNS-GVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTL 543
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+D H + A + + M +G +P T
Sbjct: 544 IDCHCKSGHHNKAEELFEAMQESGCSPCTTT 574
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
A + VI N + A FE + GL P +YNAL+ + K +A +
Sbjct: 362 TATLVAVITALGNAGRTEEAEAIFEELKEG-GLMPRTRAYNALLKGYVKTGSLKDAESIV 420
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G P+ +YSLL+DA+ ++A V+ EM +G P+ ++
Sbjct: 421 SEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRI 473
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD H+Y+ LI A+ + A V + + + GV+PN+ +S ++ ++ + +
Sbjct: 427 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKS 486
Query: 161 LSVIDEMVNAGFAPSKE 177
V+ EM N+G +P +
Sbjct: 487 FQVLREMRNSGVSPDRH 503
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + N+LI AFG+ ++ EA V +++ +KP+ ++Y+ L+ A +
Sbjct: 630 GLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKV 689
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+V +EM +G P ++ + + R +R M+
Sbjct: 690 PAVYEEMTLSGCTPDRKA-RAMLRSALRYME 719
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS G PD +SYN +IYA+G+ + EASR+
Sbjct: 633 STATYNSLMHMYSRLGDCEKCENILTEIKSS-GARPDRYSYNTMIYAYGRKGQMKEASRL 691
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F + S G+ P+ ++Y++ V +++ N + A+ ++ MV G P++ T + + R
Sbjct: 692 FSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCR 751
Query: 189 E 189
Sbjct: 752 H 752
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 83 IWDLDRAYQTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I LDRA + A+G+ G P++ +YNALI G K E VF+ L S G
Sbjct: 361 ISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGF 420
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ ++++ L+ N V EM +G+ P ++T
Sbjct: 421 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDT 461
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y LI + K A ++ ++ G KPN +Y+ L+ H
Sbjct: 349 GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 408
Query: 161 LSVIDEMVNAGFAP 174
++V D++ +AGF P
Sbjct: 409 MAVFDDLRSAGFVP 422
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR--DQK 158
G+ PDI +YNA++ A + + +A ++F + +L +P+ +SYS L+ A+ + D+
Sbjct: 489 GIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKM 548
Query: 159 AALS 162
ALS
Sbjct: 549 KALS 552
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++YN LI + EA++VF+ + + G +P+ ++++ L+D + R A
Sbjct: 244 GIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEA 303
Query: 161 LSVIDEMVNAGFAPS 175
+ V+ EM G PS
Sbjct: 304 IGVLKEMELGGCPPS 318
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI ++ K EA+ + E + G++P+ ++Y+ L+ AA
Sbjct: 314 GCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAA 373
Query: 161 LSVIDEMVNAGFAPS 175
+ DEM+ G P+
Sbjct: 374 IGTYDEMLRNGCKPN 388
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR---DQKAA 160
PD +Y AL+ AF + + +A VF +V+ G++P ++Y++++ H+ ++ K
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVL--HVYSKIAVPWKDV 233
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++++D M N G + T + C R
Sbjct: 234 VALVDSMKNDGIPLDRYTYNTLISCCRR 261
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 417 SAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFD 476
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
++ + M+ AG P T V R E +++ A + D R
Sbjct: 477 QSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCR 526
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++N+L+ +GK + EA V + + G P+ ++Y+ L+ +++ + K A
Sbjct: 279 GFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEA 338
Query: 161 LSVIDEMVNAGFAP 174
+ +EM G P
Sbjct: 339 AELKEEMEVKGIQP 352
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + AL
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAL 331
Query: 162 SVIDEMVN 169
M+
Sbjct: 332 EYRKRMIK 339
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANGL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+ H NR A+ + +M++ +P T + +
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 289 KGDLKQAHDLIDEMSMK 305
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 151 DIRVAQLVFNAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 210 SVLINGLCKESKMDDANGLFDEMLDKGLVPNGVT 243
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ + + D+ +Y ALI + + +A +V ++S+
Sbjct: 317 LIDGCCKEGDLETAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRYLDAEKVLREMLSV 375
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ EM G PS
Sbjct: 376 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 316 TLIDGCCKEGDLETAFEHRKRMIQ 339
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQVS-GVQPDVYTYSVLINGLCKESKMDDANXL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 37 PLVVACSR--KGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P V+ C++ KGF + +E L R P V A N +I G L+ A +
Sbjct: 102 PDVILCTKLIKGFFNSRNIGKATRVMEILERYGKP--DVFAYNALISGFIKANQLENANR 159
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + S G PD+ +YN +I +F K A +FE L+ +P ++Y++L++A
Sbjct: 160 VLDRMKSR-GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEAT 218
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+ + A+ ++DEM++ G P T + R +EM
Sbjct: 219 ILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEM 257
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LS+ P N +I G +D+A++ ++ SS G PDI +YN L+
Sbjct: 233 EMLSKGLEP--DTLTYNAIIRGMCKEMMVDKAFELLRSL-SSRGCKPDIITYNILLRTLL 289
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K E ++ ++S+G KPN +++S+L+ + + A++++ M G P
Sbjct: 290 SRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKP 346
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ + K +A VFE L +G PN SY+
Sbjct: 364 LDLATEFLEYMISD-GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYN 422
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L A ++ D+ AL +I +++N G P + T
Sbjct: 423 TLFSALWSSGDRYRALEMILKLLNQGIDPDEIT 455
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 4 LQRAFITLNEFETAYGDSIID--MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLEN 59
L FI N+ E A + ++D F P Y +++ CSR + ++ +L
Sbjct: 144 LISGFIKANQLENA--NRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLK 201
Query: 60 LSRAEPPYKSVAAINCVILGCANIWD--LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
EP I IL A I D +D A + + + S GL PD +YNA+I
Sbjct: 202 -DNCEP-----TVITYTILIEATILDGGIDVAMKLLDEMLSK-GLEPDTLTYNAIIRGMC 254
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K +A + L S G KP+ ++Y++L+ L+ +I EM++ G P+
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314
Query: 178 T 178
T
Sbjct: 315 T 315
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 20/173 (11%)
Query: 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
PL+ R+G L + + + P + N ++ G D+A + FE +
Sbjct: 353 PLIAGFCREGRLDLATEFLEYMISDGCLP---DIVNYNTIMAGLCRTGKADQALEVFEKL 409
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G P++ SYN L A + A + L++ G+ P+ ++Y+ L+ +
Sbjct: 410 -DEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGM 468
Query: 157 QKAALSVIDEMVNAGFAPSKET-------LKKVRRRCVREMDEESNDRVEALA 202
A+ ++ +M + + P+ + L KV R +ND +E LA
Sbjct: 469 VDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNR---------ANDAIEVLA 512
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
RA + F + S G PD+++YNAL+ A+ + + A VF+ +V GV+P+ +SY++L
Sbjct: 250 RAEEIFAEL-QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNIL 308
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+DA A +V D M AGF P+ ++
Sbjct: 309 IDAFGRAGLTADAQAVYDSMKEAGFKPTMKS 339
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ N +D E++ SS PDI + N LI A+ + +A VF L
Sbjct: 376 NSLLSAYGNSGRIDEMESLLESMVSSVA-KPDISTLNTLINAYAQGGYIEKAEEVFNSLE 434
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-EMDE 192
S G+ P+ MS++ L+ A+ + + +S+ +MV AG P + T K C E +
Sbjct: 435 SKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVK 494
Query: 193 ESNDRVE 199
E D +E
Sbjct: 495 EVTDMIE 501
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F+A+ + G+ PD SYN LI AFG+ T +A V++ + G KP S+ LL+
Sbjct: 286 AKEVFQAMVEA-GVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLL 344
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
++ A ++ E+ N+G P
Sbjct: 345 SSYAKAGKVTEAERLVREIENSGVKP 370
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++Y AL+ A + A +F L S+G P+ +Y+ L++A+ A V
Sbjct: 230 PNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV 289
Query: 164 IDEMVNAGFAPSK 176
MV AG P +
Sbjct: 290 FQAMVEAGVRPDQ 302
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +N LI A+GK K+ EA + F + P S+++L+ A+ + A +
Sbjct: 81 PDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKL 140
Query: 164 IDEMVNAGFAPS 175
EM + ++P
Sbjct: 141 FHEMKESNYSPG 152
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G AY E + S G PDI +Y LI F K KK+ +A RVFE LV
Sbjct: 58 NSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 116
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ G +P+ ++YS L+D K A+ + M+ +G
Sbjct: 117 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 154
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +C+I G L A F + S P+ +YN+LI F ++ K EA +
Sbjct: 124 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 183
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
E + G P+ ++Y+ L++ A ++++M G P+
Sbjct: 184 ERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +D A E + + G +PD+ +Y L+ F KL + +A + +
Sbjct: 164 NSLISGFCRMGKMDEAMNLLERMAET-GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT 222
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN ++++ L+D A+ ++ EM +P+
Sbjct: 223 RKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPT 264
>gi|327356728|gb|EGE85585.1| hypothetical protein BDDG_08530 [Ajellomyces dermatitidis ATCC
18188]
Length = 1517
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + G + + D R F + +G ++ N LI+ + K ++A +
Sbjct: 540 SEEAYQIALTGFSRLGDFRRVTSLFNSYVGHYGQPRKLNLVNPLIHVNAAVGKVYQARKQ 599
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD++ ALS EM++AG P TL +
Sbjct: 600 LERLRSEFSLSPDVTSWNIVLTAHAKARDKQGALSTYQEMIDAGLKPDSHTLGILMGLFA 659
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ ES +AK +DI++N
Sbjct: 660 KDGSVESVMDFLQVAKGYDIQLN 682
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G AY E + S G PDI +Y LI F K KK+ +A RVFE LV
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ G +P+ ++YS L+D K A+ + M+ +G
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +C+I G L A F + S P+ +YN+LI F ++ K EA +
Sbjct: 185 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 244
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E + G P+ ++Y+ L++ A ++++M G P
Sbjct: 245 ERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L++A F S G PD+++Y A+I+A + EA + E + +
Sbjct: 17 LIQGLCKVKRLEQAL-IFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANR 75
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ PN ++Y++L+D A++++ +M
Sbjct: 76 NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
Query: 45 KGFET---LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
KGF L++ Y L+ E SV N V+L + ++ A ++ + G
Sbjct: 405 KGFRKQNLLENAYLLLD--GAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGK-G 461
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TP + SYN +I K +A V ++ G+KPNA++Y++L++ D + A
Sbjct: 462 ITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAF 521
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++ D+MV AG P+ T + C E+ D++ K+
Sbjct: 522 NMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQ 565
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL DI Y LI F K++ A + F L+ +G+ PN + Y++++ A+ + +AA
Sbjct: 636 GLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAA 695
Query: 161 LSVIDEMVN 169
L++ EM+N
Sbjct: 696 LNLHKEMIN 704
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI YN LI + A ++ + + + P + Y+ L+ H + + A
Sbjct: 741 GIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEA 800
Query: 161 LSVIDEMVNAGFAPSKET 178
+ DEM++ G P T
Sbjct: 801 FRLHDEMLDKGLVPDDTT 818
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D ++ L+ A K K EA R F G+K +A SYS+++ A D A ++
Sbjct: 221 DCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLV 280
Query: 165 DEMVNAGFAPSKETLKKVRRRCVR 188
+ G+ PS+ T V CVR
Sbjct: 281 EGDEELGWVPSEGTYAAVIGACVR 304
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D + A+ F+ + ++ G+ P +++N++I K+ + EA + P +M+Y
Sbjct: 516 DCEHAFNMFDQMVAA-GIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTY 574
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ ++D ++ +A SV EM + +P+
Sbjct: 575 NCIIDGYVKEGAIDSAESVYREMCRSEISPN 605
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G AY E + S G PDI +Y LI F K KK+ +A RVFE LV
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ G +P+ ++YS L+D K A+ + M+ +G
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +C+I G L A F + S P+ +YN+LI F ++ K EA +
Sbjct: 185 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 244
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E + G P+ ++Y+ L++ A ++++M G P T + RE
Sbjct: 245 ERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRE 304
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L++A F S G PD+++Y A+I+A + EA + E + +
Sbjct: 17 LIQGLCKVKRLEQAL-IFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANR 75
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ PN ++Y++L+D A++++ +M
Sbjct: 76 NLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
RKG E +++++ LS+ P SV +I G A L+RA+ F + G+
Sbjct: 566 RKGRE----IFYEM--LSKGLTP--SVVTYTVLIHGHAGKGRLERAFIYFSEMQEK-GIL 616
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YN+LI K+++ +A F +V G+ PN SY++L++ + + + ALS+
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676
Query: 164 IDEMVNAGFAPSKET----LKKVRRRC----VREMD 191
+M++ G P T LK++ + C VR+++
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQLE 712
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
PL+ KG +++ Q E + + P +VA N I G + + A Q +
Sbjct: 309 PLIYGYFNKGMLA-EALSLQEEMVLKGASP--TVATYNSFIYGLCKLGRMSDAMQQLSDM 365
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
++ L PD+ SYN LIY + +L +A +F+ L S+ + P ++Y+ L+D +
Sbjct: 366 LAN-NLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 157 QKAALSVIDEMVNAGFAP 174
+ A + EM+N G AP
Sbjct: 425 LEVAQQLKVEMINEGIAP 442
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I+G + D RA+ E + + G PD+ YN ++ KL EAS + + +VS G
Sbjct: 486 IVGELKLGDTSRAFSLQEEMLAK-GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V P+ ++Y+ ++ AHL N + + EM++ G PS T
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVT 586
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ +A + + +G FG+ P I +YN L+ ++ K K + + + G PN ++Y+
Sbjct: 215 MSKAVEVYRTMGE-FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++ + + A +I EM+ G S T
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPD 105
F+ L S+Y + ++ N ++ G +L+ A Q E + G+ PD
Sbjct: 397 FDELRSIYL-----------FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE--GIAPD 443
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
I +Y L+ K+ A F+ ++ G++ ++ +Y+ + L D A S+ +
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 503
Query: 166 EMVNAGFAP 174
EM+ GF P
Sbjct: 504 EMLAKGFPP 512
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ + N ++ +A V+ + G+KP ++Y+ L+D++ + L
Sbjct: 195 LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGL 254
Query: 162 SVIDEMVNAGFAPSKET 178
++ EM G AP+ T
Sbjct: 255 DLLSEMQRRGCAPNDVT 271
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI K + +A + ++ G+K +A +Y+ L+ + A
Sbjct: 264 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323
Query: 161 LSVIDEMVNAGFAPSKET 178
LS+ +EMV G +P+ T
Sbjct: 324 LSLQEEMVLKGASPTVAT 341
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G I DLD ++ ++V + G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKIGDLDEGFR-LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANAL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+++ + +GL P + S+N L+ + K+ E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDSI-TKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A ++ DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANALFDEMLDNGLVPNGVT 243
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D + D + A
Sbjct: 272 LLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 162 SVIDEMV 168
M+
Sbjct: 332 EYRKRMI 338
>gi|239615411|gb|EEQ92398.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 1514
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + G + + D R F + +G ++ N LI+ + K ++A +
Sbjct: 540 SEEAYQIALTGFSRLGDFRRVTSLFNSYVGHYGQPRKLNLVNPLIHVNAAVGKVYQARKQ 599
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD++ ALS EM++AG P TL +
Sbjct: 600 LERLRSEFSLSPDVTSWNIVLTAHAKARDKQGALSTYQEMIDAGLKPDSHTLGILMGLFA 659
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ ES +AK +DI++N
Sbjct: 660 KDGSVESVMDFLQVAKGYDIQLN 682
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 158 SVVSYNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 216
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N AL + +M++ P T + +
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCK 276
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 277 KGDLKQAHDLIDEMSMK 293
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ + + GV+P+ +Y
Sbjct: 139 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 197
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 198 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 231
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 245 VDLALEIYKQMLSQ-SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 303
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D A M+
Sbjct: 304 ALIDGCCKEGDLDTAFEHRKRMIQ 327
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 305 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 363
Query: 136 GVKPNAMSYSLLVD 149
G+KP+A +Y+++++
Sbjct: 364 GLKPDARTYTMIIN 377
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD+ RA +T+ + E+ L P +A F ++ + +++ +
Sbjct: 290 IGDMDRAILTIEQMES----------------RGLRPNCIA-----FNSVIDKFCEMQMI 328
Query: 61 SRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
+AE K SV N +I G + R +Q E + + G P++ SY +
Sbjct: 329 DKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEEN-GEKPNVISYGS 387
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI K K EA V +V GV PNA Y++L+D T + AL DEM G
Sbjct: 388 LINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNG 447
Query: 172 FAPS 175
+
Sbjct: 448 IGAT 451
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+ +PL+ CS++G + ++++ ++ ++ + A I+C + +A+
Sbjct: 522 INTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCY----QETGHVQKAF- 576
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + G+ PD +YN+LI K K E + + + + G+ P A +YSLL+ H
Sbjct: 577 SLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGH 636
Query: 152 LTNRDQKAALSVIDEMVNAGFAPS 175
+D A EM+ GF P+
Sbjct: 637 CDLKDFNGAYVWYREMLENGFLPN 660
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD YNA+I+ + + +A + + +V +GV+P+ +Y+ L+ HL
Sbjct: 552 LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETK 611
Query: 162 SVIDEMVNAGFAPSKET 178
++D+M G P +T
Sbjct: 612 DLVDDMKAKGLIPEADT 628
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + L A + F + +S G PD+ +YN+LI + + + +
Sbjct: 451 TIVTYNSLIKGLCKMGKLKEAEEMFFLI-TSTGHCPDVITYNSLISGYSNAGNSQKCLEL 509
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+E + LG+KP ++ L+ + K ++ +EM+ +P +
Sbjct: 510 YETMKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDR 556
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P YN ++ + ++ A E + S G++PN ++++ ++D + A
Sbjct: 272 GLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKA 331
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +MV G APS ET
Sbjct: 332 EEWVKKMVGKGIAPSVET 349
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+L + DL A + FE + + P++ YN LI K K+ +A ++F +
Sbjct: 73 MLAAVKLGDLKLAMELFETM-KRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRN 131
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ PN ++++ L+D + + A+ + + M PS
Sbjct: 132 LVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPS 170
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 32 FTSL-YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
FTSL Y L C+ +E ++F++ N P I C + + R
Sbjct: 452 FTSLVYGL---CTIDKWEKAGELFFEMVN-QGIHPNVVFFNTIMCNLCTEGRVMKAQRLI 507
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
E VG+ PDI SYNALI + KT EAS++ + ++S+G+KPN +Y+ L+
Sbjct: 508 DLMERVGTR----PDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHG 563
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
+ + A SV EM++ G P
Sbjct: 564 YCRDGRIDDAYSVFQEMLSNGITP 587
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 7 AFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRA 63
F T + + AY + +DM ++ P Y +V+ C + + + V+ Q+ + +
Sbjct: 213 GFFTEGQVDKAY-NLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQM--IDKG 269
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
P ++ C+I G +I + + + S+ GL PD +Y L+ K K
Sbjct: 270 VRP--NIVTYTCLIHGYLSIGQWKEVVRMLKEM-SAHGLEPDCFTYGLLLDYLCKKGKCT 326
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++F+ ++ G+KP+ Y +++ + T S +D MV G +P+
Sbjct: 327 EARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPN 378
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P++ +Y LI A KL + +A F +++ GV PN + ++ LV T + A
Sbjct: 409 GLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKA 468
Query: 161 LSVIDEMVNAGFAPS 175
+ EMVN G P+
Sbjct: 469 GELFFEMVNQGIHPN 483
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRDQKA 159
G++P+ + +N + AF K EA +F + G+ PN ++Y+ L+DA R A
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433
Query: 160 ALSVIDEMVNAGFAPS 175
L ++M+N G AP+
Sbjct: 434 ELK-FNQMINEGVAPN 448
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 85 DLDRAYQTFE-----AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
D +RA + E A G P++ SYN +I F + +A +F + G+ P
Sbjct: 178 DENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPP 237
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
N ++Y++++D + A V +M++ G P+ T
Sbjct: 238 NVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVT 276
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
FE V G+ P++ +N ++ + +A R+ + + +G +P+ +SY+ L+ H
Sbjct: 473 FEMVNQ--GIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHC 530
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
A ++D M++ G P++ T
Sbjct: 531 LVGKTDEASKLLDIMLSVGLKPNECT 556
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 89 AYQTFEAVG------SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK---P 139
A + EA+G S G TP++ SYN L+ F + EA + + V+ P
Sbjct: 143 AKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPP 202
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
N +SY+ +++ T A ++ +M + G P+ T
Sbjct: 203 NLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVT 241
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N +I G + D A + + + S GL P+ +YN L++ + + + +A VF
Sbjct: 519 IISYNALIRGHCLVGKTDEASKLLD-IMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVF 577
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ ++S G+ P ++Y+ ++ R A + M+ +G
Sbjct: 578 QEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619
>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Brachypodium distachyon]
Length = 461
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 74 NCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I G C + DLD A+ + + S G D SYN L+ KL + +A+ + E +
Sbjct: 295 NAMIAGFCEDEMDLDAAFVVLDDMQKS-GCKADTVSYNTLVAGLCKLGRWRDANELVEDM 353
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
G P+ ++Y +L D + A V+DEMV GFAPSK+ +K+
Sbjct: 354 PRRGCSPDVVTYRMLFDGMCAVGEFHEANQVLDEMVFKGFAPSKDGVKR 402
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A GL+PD +Y+ +I GK A ++F +V G PN ++Y++++D
Sbjct: 457 YQRMQA----GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ + AL + +M NAGF P K T
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVT 541
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G KP+ ++Y L+D H A
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 161 LSVIDEMVNAGFAP 174
+ + M G +P
Sbjct: 454 MDMYQRMQAGGLSP 467
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++A+ + GL P++ + N+L+ F ++ K EA + +++++LG++P+ +Y
Sbjct: 589 NVEKAWQWYQAMLHA-GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 647
Query: 145 SLLVDAHLTNRDQ 157
+LL+ R +
Sbjct: 648 TLLLSCCTDGRSK 660
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 419 MNVFNQMQEAGCKPDRVT 436
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMXAS-GVQPDVYTYSVLINGLCKEXKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ND + ++ K
Sbjct: 295 KGDLKQANDLIXEMSMK 311
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ + + GV+P+ +Y
Sbjct: 157 DIRVAXSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKEXKMDDANELFDEMLVKGLVPNXVT 249
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC +LB A++ + + D +Y ALI + + +A ++ ++S+
Sbjct: 323 LIDGCCKEGNLBTAFEHRXRMIEE-NIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA +D A+ + V S GLTP+I +YN+LIY K K A +F L S
Sbjct: 741 LIHGCAASGSIDEAF-SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G+ PN ++Y+ L+D + A + +MV G+
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGY 836
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ YN +I KL + E +V + + +G++P+ SY+ L+D + + A
Sbjct: 354 GIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413
Query: 161 LSVIDEMVNAGFAPSKET 178
+ MV G A + T
Sbjct: 414 FEMCRMMVRNGLAATTLT 431
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL ++ ++N +I K+ + EA + + + L P++++Y L D + A
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553
Query: 161 LSVIDEMVNAGFAPSKE 177
++++M + GFAPS E
Sbjct: 554 THLMNKMEHLGFAPSVE 570
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ C+ G ++D F L ++ + ++ N +I G L RA F +
Sbjct: 741 LIHGCAASG--SIDEA-FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 797
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG----------------VKPNA 141
S G++P+ +YN LI + K KT EA ++ + +V G V PN
Sbjct: 798 SK-GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNY 856
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y L+ ++ + + + + DEM G P+
Sbjct: 857 ITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 890
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
GL ++ +Y+A++ + + T +A R+ E L G+ PN ++Y+LLV + + +
Sbjct: 246 GMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRME 305
Query: 159 AALSVIDEMVNAG 171
A V+ EM G
Sbjct: 306 EAERVVKEMKETG 318
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S+ GL+P++ +Y ALI + K EA ++ +V+ G+ PN S L+
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655
Query: 158 KAALSVIDEMVNAGFAPS 175
A V+ ++VN P
Sbjct: 656 DEANLVLQKLVNIDMIPG 673
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G I DLD ++ ++V + G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKIGDLDEGFR-LKSVMQASGVHPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 229 FDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 289 KGDLKQAHDLIDEMSMK 305
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+++ + +GL P + S+N L+ + K+ E R+ + + GV P+ +YS+L+
Sbjct: 155 AQSVFDSI-TKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM+B G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLBNGLVPNXVT 243
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 272 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAF 331
Query: 162 SVIDEMVN 169
M+
Sbjct: 332 EYRKRMIK 339
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ P+
Sbjct: 408 QRXGYVPN 415
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L + R+ ++ A + +I G +NI +D A Q + + GL+P++ Y ALI
Sbjct: 602 FRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKE-GLSPNVVCYTALIG 660
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ KL + + + + + V PN ++Y+++++ H + KAA +++EM G P
Sbjct: 661 GYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVP 720
Query: 175 SKET 178
T
Sbjct: 721 DAVT 724
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L++AC ++G + + + E + R P + N ++ G N+ ++ A +
Sbjct: 483 LILACCKEG-KVEEGFKLKEEMVRRGIQP--DMYTYNMLLHGLCNMGKIEEAGGLWHECK 539
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G PD ++Y +I + K + E ++F+ +V++ ++ NA+ Y L+ A+ N +
Sbjct: 540 KN-GNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM 598
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A + D+M + G + T
Sbjct: 599 REAFRLRDDMRSRGIPQTSAT 619
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G LD A+Q F+ + P + +Y LI KL++ EA+ +
Sbjct: 231 NVVTYNNIIHGLCKNGRLDEAFQ-FKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCI 289
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G PN + Y+ L+D + + AL + D+M++ G +P+ T
Sbjct: 290 LKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVT 339
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 26 EEIFSPFT--SLYPLVVACSRKGFETLD-SVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
E +F P ++ L++ F+ L V F+L +L + + S+ N ++
Sbjct: 115 ETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVK 174
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
++ +YQ F+ + G+TPD++ ++ ++ AF + +A +F + +GV PN +
Sbjct: 175 ANEVKMSYQVFD-IMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVV 233
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+Y+ ++ N A ++M PS
Sbjct: 234 TYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPS 266
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
FQ + E S+ +I G + D A + + S G P+ YN LI
Sbjct: 252 FQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEM-SDRGYAPNNVVYNTLID 310
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++ A ++ + ++S G+ PN+++ + L+ + + + A +++EM+ G
Sbjct: 311 GYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVI 370
Query: 175 SKETLKKV-RRRCVR 188
++ T V R C++
Sbjct: 371 NQGTFTSVIHRLCLK 385
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + F + G+ P++ +YN +I+ K + EA + E + VKP+ ++Y
Sbjct: 213 VDDAIELFRKM-EKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYG 271
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L++ + A ++ EM + G+AP+
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPN 301
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A GL+PD +Y+ +I GK A ++F +V G PN ++Y++++D
Sbjct: 457 YQRMQA----GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ + AL + +M NAGF P K T
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVT 541
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G KP+ ++Y L+D H A
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 161 LSVIDEMVNAGFAP 174
+ + M G +P
Sbjct: 454 MDMYQRMQAGGLSP 467
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++A+ + GL P++ + N+L+ F ++ K EA + +++++LG++P+ +Y
Sbjct: 589 NVEKAWQWYQAMLHA-GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 647
Query: 145 SLLVDAHLTNRDQ 157
+LL+ R +
Sbjct: 648 TLLLSCCTDGRSK 660
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 419 MNVFNQMQEAGCKPDRVT 436
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A GL+PD +Y+ +I GK A ++F +V G PN ++Y++++D
Sbjct: 574 YQRMQA----GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 629
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ + AL + +M NAGF P K T
Sbjct: 630 LHAKARNYQNALKLYRDMQNAGFEPDKVT 658
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G KP+ ++Y L+D H A
Sbjct: 511 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 570
Query: 161 LSVIDEMVNAGFAP 174
+ + M G +P
Sbjct: 571 MDMYQRMQAGGLSP 584
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++A+ + GL P++ + N+L+ F ++ K EA + +++++LG++P+ +Y
Sbjct: 706 NVEKAWQWYQAMLHA-GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 764
Query: 145 SLLVDAHLTNRDQ 157
+LL+ R +
Sbjct: 765 TLLLSCCTDGRSK 777
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 535
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 536 MNVFNQMQEAGCKPDRVT 553
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQVS-GVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
Length = 561
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 77 ILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+L C W D + ++ +A L PD+ SY AL+ A+ K ++ A F+ +++
Sbjct: 303 LLACQKTWKDAEDVFRKLQAAK----LDPDVFSYTALVNAYAKARRAECAHAAFDDMIAA 358
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++P ++Y+ L++A+ +D + A +V+ +M G P+ E+
Sbjct: 359 GIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVES 401
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +YNALI A+ K K A V + + G P SY+ L+ A+++ A
Sbjct: 359 GIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M A P+ +T
Sbjct: 419 EQTVLRMKEADLQPNLQT 436
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + D+D ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 159 SVVSFNTLMNGYIRLGDMDEGFRLKNAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEM 217
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCK 277
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 278 KGDLKQAHDLIDEMSMK 294
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 140 DIMVAQSVFNAI-TKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTY 198
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 199 SVLINGLCKESKMDDANEMFDEMLDKGLVPNGVT 232
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 246 VDLAMEIYKQMLSQ-SLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 304
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 305 TLIDGCCKEGDLETAFEHRKRMIQ 328
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ + + D+ +Y ALI + ++ +A +V ++S+
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQEXIRLDDV-AYTALISGLCQEERYLDAEKVLREMLSV 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
G+KP+ +Y+++++ D ++ EM
Sbjct: 365 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 289 KGDLKQAHDLIDEMSMK 305
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 151 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 375
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G APS T
Sbjct: 376 GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVT 418
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ +Y+ L+D D A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 331
Query: 162 SVIDEMVN 169
M+
Sbjct: 332 EHRKRMIQ 339
>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V AIN +I A D+A + F+ + S +G+TP + ++N LI A G+ A +VF
Sbjct: 164 VQAINSLINAFAKAGSPDQALKVFDQM-SRYGVTPSVITFNTLIDACGRAGDIDRARQVF 222
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
L G+ PN ++S L+ +H A S + EM G P++ T + C R
Sbjct: 223 SRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGR 281
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I C D+DRA Q F + S GL+P+ +++ALI++ + EA
Sbjct: 198 SVITFNTLIDACGRAGDIDRARQVFSRL-SQAGLSPNDRTFSALIHSHAVQGQVDEAFSW 256
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ + + G++PN ++YS L++A A +DEM G P+ T + C
Sbjct: 257 LQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDAC 314
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
+ +I C L RA+QT + + + G+ P++ ++ LI A GK K+ + ++F+ +
Sbjct: 273 SALINACGRAGQLARAFQTLDEMFGT-GIEPNVVTWTTLIDACGKGKELEWSFKLFKEMR 331
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
G PN ++ S L+DA L + A +V++ M++ G P++ T + +C R
Sbjct: 332 ERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCAR 386
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ + N+LI AF K +A +VF+ + GV P+ ++++ L+DA D A
Sbjct: 159 GITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRA 218
Query: 161 LSVIDEMVNAGFAPSKETL 179
V + AG +P+ T
Sbjct: 219 RQVFSRLSQAGLSPNDRTF 237
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 86 LDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
LD+A + E + G + +Y+AL+ A G+ KK A R+ + + GVKP +Y
Sbjct: 593 LDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTY 652
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
L++ +RD KAA+ V + M G P + + ++ + EE+ R AL +
Sbjct: 653 LALMEVCRHSRDSKAAVEVFEAMETEGVRPGVRSYTSL----LKAISEENTLRTRALQR 707
Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P V A N + + +D +EA+ + L P I +++ LI G ++
Sbjct: 89 PKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLAC-QLRPTIVTFSTLISRAGACRRVRL 147
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A R F ++ G+ P+ + + L++A AL V D+M G PS T +
Sbjct: 148 AERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLID 207
Query: 185 RCVREMD 191
C R D
Sbjct: 208 ACGRAGD 214
Score = 44.7 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAV---GSSFGLTPDIHSYNALIYAFGKL--KKTFEAS 126
A N ++ CA++ + DRA + G GL PD +Y +LI A + + EA
Sbjct: 896 AYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAE 955
Query: 127 RVFEHL------VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+F + S +P ++Y+ L+ A + D AL + + ++AG AP + +
Sbjct: 956 EIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTR 1015
Query: 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
C D ++ +V + ++ IR N+
Sbjct: 1016 AALAACGGAGDVDTALQVYDVMREGGIRPNS 1046
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 27 EIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E SP Y V+ AC+R G +E L ++ ++ R E + N ++ CA
Sbjct: 205 EKISPSILTYNTVINACARGGLDWEGLLGLFAEM----RHEGIQPDIVTYNTLLSACAIR 260
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D A F + G+ PD+ +Y+ L+ FGKL++ + + + S G P+ S
Sbjct: 261 GLGDEAEMVFRTMNDG-GIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y++L++A+ + K A+ V +M AG P+ T
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANT 354
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + VF+ + S GV + SY
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++A+ N + +L ++D M N +PS T V C R
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACAR 223
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+S G PDI SYN L+ A+ K EA VF + + G PNA +YS+L++
Sbjct: 309 ASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP+ ++Y+ L+ FG+ + + ++F + S P+A +Y++L++ K
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
+++ +MV P ET + + C
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFAC 432
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +Y +I+A GK +A ++ +++ + + P++ +Y+ +++A + AL
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
+ M G PS ET +
Sbjct: 478 VAFNTMHEVGSNPSIETFHSL 498
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y++LI + K+ +A +F++++SLG++P+ ++Y+ L+D H + + A
Sbjct: 432 GVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERA 491
Query: 161 LSVIDEMVNAGFAP 174
LS+ DEMV AG P
Sbjct: 492 LSLHDEMVKAGVLP 505
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++DRA + + + GL P++ ++N+++ K + +A +VF+ +V G+ P+ +SY
Sbjct: 207 EVDRAERLVDMMREG-GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSY 265
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ LV + ALSV EM G P
Sbjct: 266 NTLVGGYCKVGCSHEALSVFAEMTRKGIMP 295
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YNA++ A A R F+ ++S GV PN +Y++LV A +K A
Sbjct: 118 GYAPSVLAYNAVLLALSD-ASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176
Query: 161 LSVIDEMVNAGFAPSKET 178
LSV+ +M AG P+ T
Sbjct: 177 LSVLRDMRGAGCDPNAVT 194
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL- 60
G+L+RA + E + + M EI FT+L + +KGF LD + +
Sbjct: 311 GNLERAVGLVREMR----ERGLQMNEI--TFTAL---IDGFCKKGF--LDDALLAVREMR 359
Query: 61 -SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
R +P SV N +I G + +D A + + + G+ PD+ +Y+ ++ A+ K
Sbjct: 360 QCRIQP---SVVCYNALINGYCMVGRMDEARELVREMEAK-GVKPDVVTYSTILSAYCKN 415
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
T A ++ + ++ GV P+A++YS L+ + A + M++ G P + T
Sbjct: 416 GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVT 474
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + YNALI + + + EA + + + GVKP+ ++YS ++ A+ N D +A
Sbjct: 363 IQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAF 422
Query: 162 SVIDEMVNAGFAPSKETLKKVRR 184
+ +M+ G P T + R
Sbjct: 423 QLNQQMLENGVLPDAITYSSLIR 445
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV A N V+L ++ L A + F+++ S G+ P++++YN L+ A EA V
Sbjct: 122 SVLAYNAVLLALSD-ASLPSARRFFDSMLSD-GVAPNVYTYNILVRALCGRGHRKEALSV 179
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G PNA++Y+ LV A + A ++D M G P+ T V
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSV 233
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN L+ AF + + A R+ + + G+KPN ++++ +V+ + A
Sbjct: 187 GCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDA 246
Query: 161 LSVIDEMVNAGFAP 174
V DEMV G AP
Sbjct: 247 RKVFDEMVKEGLAP 260
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+ G ++ A + F+ + GL PD SYN L+ + K+ + EA VF +
Sbjct: 231 NSVVNGICKAGRMEDARKVFDEMVKE-GLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT 289
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G+ P+ ++++ L+ + + A+ ++ EM G
Sbjct: 290 RKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGL 328
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 3 DLQRAFITLNEF-ETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
DL++A ++ + + I+ I T + + +K +E ++S +L+ L
Sbjct: 224 DLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGL- 282
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+N +ILG A D +RA V +S GL P ++ A+I A G +
Sbjct: 283 ----------LLNDIILGFAKAGDPNRALYFLSMVQAS-GLNPKTSTFVAVISALGNHGR 331
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
T EA +FE + G+KP +++ L+ + K A S+I EM +G +P + T
Sbjct: 332 TEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD H YN +I FGK A ++ ++S G++P+ ++++ L+D H + A +
Sbjct: 454 PDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAEL 513
Query: 164 IDEMVNAGFAPSKET 178
+EM G+ P T
Sbjct: 514 FEEMQERGYLPCPTT 528
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ G A L A + S GL+PD H+Y L+ A+ + + A +
Sbjct: 351 IKAFNALLKGYARKGSLKEAESIISEMEKS-GLSPDEHTYGLLVDAYANVGRWESARHLL 409
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ + + V+PN +S ++ ++ + + V+ EM N+ P +
Sbjct: 410 KQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRH 457
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Query: 25 MEEIFSPFTSLYPLVVACSRK-GFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+ E P + ++ C RK G+ + F+ E R P + I LG
Sbjct: 483 LSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFE-EMQERGYLPCPTTYNIMINSLGEQEK 541
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
WD + S GL P++ +Y L+ +G + +A E + S G+KP+A
Sbjct: 542 WD---EVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATM 598
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L++A + A++ M++ G PS
Sbjct: 599 YNALINAFAQRGLSEQAVNAYRVMISDGLRPS 630
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A EA+ S+ GL P YNALI AF + + +A + ++S G++P+ ++ + L+
Sbjct: 580 AIDCLEAMKSA-GLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLI 638
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+A +R A S++ M P T + + +R
Sbjct: 639 NAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIR 678
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
VI N + A FE + GL P I ++NAL+ + + EA + +
Sbjct: 321 AVISALGNHGRTEEAEAIFEEMKEG-GLKPRIKAFNALLKGYARKGSLKEAESIISEMEK 379
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ P+ +Y LLVDA+ ++A ++ +M P+
Sbjct: 380 SGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPN 420
>gi|226495279|ref|NP_001145232.1| uncharacterized protein LOC100278503 [Zea mays]
gi|195653305|gb|ACG46120.1| hypothetical protein [Zea mays]
Length = 549
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C +D A +G P HSYN +I K + +A +VF +
Sbjct: 240 NVLIEVCVKAGGMDEAVHWLRQMGYDGMEPPSAHSYNLVIAGLWKAGRGDDAVKVFGEMT 299
Query: 134 SLGVKPNAMSYSLLVDAHLT------------NRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN +Y+++++ HL N D +AAL+++D+MV GF P + T
Sbjct: 300 DMLVAPNHFTYTVMINGHLKRLSSVLSSRKNENGDLEAALALLDQMVRDGFKPHEYT 356
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
LV C + G+ ++ +F E LS+ P + A N I+G I D A+ E +
Sbjct: 431 LVNGCFKLGYVSMARGFFN-EMLSKGLKPDR--FAYNTRIVGEMKIADTSVAFSMQEEML 487
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G PD+ +YN ++A + EA + E++VS G+ P+ ++Y+ +++ + N
Sbjct: 488 AA-GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHL 546
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A V +EM++ G APS T
Sbjct: 547 RKAREVFNEMLSKGVAPSVVT 567
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G LD A + + + GL PDI +Y L+ KL A
Sbjct: 389 TVITYNTLIHGLCMWGYLDAALRLKKEMTDQ-GLFPDIFTYTILVNGCFKLGYVSMARGF 447
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
F ++S G+KP+ +Y+ + + D A S+ +EM+ AGF P T V C
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507
Query: 188 REMDEESNDRVEALA 202
+ EE+ D +E +
Sbjct: 508 QGNFEEACDLLENMV 522
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
FG+ P + +YN ++ ++ K + +A + + G PN ++Y++LV+ + +
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELE 267
Query: 159 AALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
A +I+EM+N+G S T + C + + E+ D VE + +
Sbjct: 268 QAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LS+ P SV +I A LD A+ F + + ++ +YNA+I
Sbjct: 555 EMLSKGVAP--SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEK-SVPANVITYNAIINGLC 611
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
++ EA + F+ + G+ PN SY++L++ + AL + EM++ P
Sbjct: 612 MTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSF 671
Query: 178 TLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT---ENRKNIL 218
T + R+ + VE+L + + +N RKN++
Sbjct: 672 THSVFLKNLHRDYQVHAVQCVESLIQNVEDNINVRLLRPRKNVM 715
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
TPDI S+N+L+Y + + EA +F+ L + P ++Y+ L+ AAL
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ EM + G P T + C +
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFK 437
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
GC + + A F + S GL PD +YN I K+ T A + E +++ G
Sbjct: 434 GCFKLGYVSMARGFFNEMLSK-GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFP 492
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
P+ ++Y++ V A + + A +++ MV+ G P T +
Sbjct: 493 PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ + N ++ +A V+ + G+KP ++Y+ ++D++ A
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQA 234
Query: 161 LSVIDEMVNAGFAPSKET 178
L ++ EM G P+ T
Sbjct: 235 LELLSEMQERGCYPNDVT 252
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
RKG E +++++ LS+ P SV +I G A L+RA+ F + G+
Sbjct: 566 RKGRE----IFYEM--LSKGLTP--SVVTYTVLIHGHAGKGRLERAFIYFSEMQEK-GIL 616
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YN+LI K+++ +A F +V G+ PN SY++L++ + + + ALS+
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676
Query: 164 IDEMVNAGFAPSKET----LKKVRRRC 186
+M++ G P T LK++ + C
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDC 703
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
PL+ KG +++ Q E + + P +VA N I G + + A Q +
Sbjct: 309 PLIYGYFNKGM-LAEALSLQEEMVLKGASP--TVATYNSFIYGLCKLGRMSDAMQQLSDM 365
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
++ L PD+ SYN LIY + +L +A +F+ L S+ + P ++Y+ L+D +
Sbjct: 366 LAN-NLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 157 QKAALSVIDEMVNAGFAP 174
+ A + EM+N G AP
Sbjct: 425 LEVAQQLKVEMINEGIAP 442
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I+G + D RA+ E + + G PD+ YN ++ KL EAS + + +VS G
Sbjct: 486 IVGELKLGDTSRAFSLQEEMLAK-GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V P+ ++Y+ ++ AHL N + + EM++ G PS
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ +A + + +G FG+ P I +YN L+ ++ K K + + + G PN ++Y+
Sbjct: 215 MSKAVEVYRTMGE-FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++ + + A +I EM+ G S T
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPD 105
F+ L S+Y + ++ N ++ G +L+ A Q E + G+ PD
Sbjct: 397 FDELRSIYL-----------FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE--GIAPD 443
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
I +Y L+ K+ A F+ ++ G++ ++ +Y+ + L D A S+ +
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 503
Query: 166 EMVNAGFAP 174
EM+ GF P
Sbjct: 504 EMLAKGFPP 512
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ + N ++ +A V+ + G+KP ++Y+ L+D++ + L
Sbjct: 195 LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGL 254
Query: 162 SVIDEMVNAGFAPSKET 178
++ EM G AP+ T
Sbjct: 255 DLLSEMQRRGCAPNDVT 271
>gi|413954862|gb|AFW87511.1| hypothetical protein ZEAMMB73_754127 [Zea mays]
Length = 549
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C +D A +G P HSYN +I K + +A +VF +
Sbjct: 240 NVLIEVCVKAGGMDEAVHWLRQMGYDGMEPPSAHSYNLVIAGLWKAGRGDDAVKVFGEMA 299
Query: 134 SLGVKPNAMSYSLLVDAHLT------------NRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN +Y+++++ HL N D +AAL+++D+MV GF P + T
Sbjct: 300 DMLVAPNHFTYTVMINGHLKRLSSVLSSRKNENGDLEAALALLDQMVRDGFKPHEYT 356
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 37 PLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
PL+ C +G +E LD +++ EP +V A N +I G + L+ A Q +
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQD--GCEP---NVVAYNTLIHGLCSNGSLEEALQVCD 373
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ S G P++ +Y+ LI F K AS + ++S G +PN ++Y+ +VD N
Sbjct: 374 QMQRS-GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
A S++++M G P+ T ++ C N RVE K
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLC-------GNGRVEWAMK 475
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +IH++ LI K +EA +++ ++ G +PN ++Y+ L+ +N + A
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368
Query: 161 LSVIDEMVNAGFAPSKET 178
L V D+M +G P+ T
Sbjct: 369 LQVCDQMQRSGCLPNVTT 386
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C+I G + ++A + F +G FG P + YN L+ A K + ++ ++
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGE-FGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN +Y++L+ A N AA + EM N G P T
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVT 216
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKA 159
G PD +YN +I+A+ K K A+++ E + S+ P+ ++Y+ L+ + +
Sbjct: 554 GTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEE 613
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRR 184
A++ +D+ +N G P+ T + R
Sbjct: 614 AMAFLDKAINQGICPNFATWNALVR 638
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ A+ F+ + + L P++ +YN ++Y F + EA ++F + G P++++Y+
Sbjct: 506 EEAFGLFQEI-EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Query: 147 LVDAHLTNRDQKAALSVIDEM 167
++ A+ K A +++ +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERV 585
>gi|388583072|gb|EIM23375.1| hypothetical protein WALSEDRAFT_67637 [Wallemia sebi CBS 633.66]
Length = 466
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+L+ AF L I+ +I + P++ S K + +D Y+ L +L+
Sbjct: 262 GNLKEAFPILG---------IMRQNKIQPQLETAQPILDNIS-KSIDNVDEAYYLLHDLN 311
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ + V+A+N +I C + D+ RA TF+ + F + P +YN L+
Sbjct: 312 K-QGEAMDVSAVNVIISACVKLGDMHRALSTFQEI-DQFKVKPSTETYNILLSGCIDGSN 369
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
++ + V+P+A ++ L+ LT + A ++EM AG+ P + +
Sbjct: 370 RSLGDKLLTMMKKQNVQPDARTFERLIVLCLTQTAYEDAFFYLEEMKGAGYIPPQSVYET 429
Query: 182 VRRRC 186
+ RRC
Sbjct: 430 LIRRC 434
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ YN ++ A+G+ + +A+ +F + + G+ PNA+SY ++ A+ ++ A
Sbjct: 286 GCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADA 345
Query: 161 LSVIDEMVNAGFAPSKET 178
V+D+M AGF+P + +
Sbjct: 346 QIVLDQMTRAGFSPDRSS 363
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +Y L+ + + K EA VF + +G KP+ M YSL++ + + A
Sbjct: 181 GLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEA 240
Query: 161 LSVIDEMVNAGFAPSKET 178
V ++ N G+ P+ T
Sbjct: 241 ALVFRQLQNDGYIPNVVT 258
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+I ++N L+ + + EA+ V++ ++ G+KP ++Y+ LV + K A+
Sbjct: 147 VVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAI 206
Query: 162 SVIDEMVNAGFAP 174
V EM G P
Sbjct: 207 EVFLEMRRVGCKP 219
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ Y+ +I +GK EA+ VF L + G PN +++ L+ A +
Sbjct: 216 GCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEI 275
Query: 161 LSVIDEMVNAGFAP 174
+ +EM+ +G P
Sbjct: 276 GAFFNEMLASGCLP 289
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P+ H+Y ++ G+ T +A +F+ ++S GV+ S++ ++ A+ K A
Sbjct: 6 LKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAW 65
Query: 162 SVIDEMVNAGFAPSKETL 179
+ ++MV +G + TL
Sbjct: 66 RMYEDMVESGIQADEITL 83
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+VA +I G + +A++ + + + G+ P+ ++ ALI ++ K EAS++
Sbjct: 469 TVATYTSLISGYCKDGLVPKAFKLYHEM-TGKGIAPNTVTFTALICGLCQINKMAEASKL 527
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
F+ +V L + PN ++Y++L++ H + A ++DEM+ G +P T +
Sbjct: 528 FDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYR 579
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ +I G + ++ A++ VG G+ P++ YN++I + K K EA +
Sbjct: 329 SEAAVSGLIEGLIKMGSIEGAFELLNKVGK-LGVVPNLFVYNSMINSLCKTGKLEEAELL 387
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F + G+ PN ++Y++L+D A ++M+ G + +
Sbjct: 388 FSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISAT 434
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
QL N + + + + N +I G I A + + V G+ PD +Y+ IY
Sbjct: 769 LQLHN-AMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLD-VMIGIGMVPDCITYSTFIY 826
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ K A ++E ++ G+KP+ + ++ L+ A N + AL + ++M+ G P
Sbjct: 827 EYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKP 886
Query: 175 SKET 178
++ T
Sbjct: 887 TQST 890
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A+ F + G++ ++SYN++I K K A +F+ +V G+KP +Y+
Sbjct: 416 LDVAFYYFNKMIEC-GISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYT 474
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ + + A + EM G AP+ T
Sbjct: 475 SLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVT 507
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+GL P++ + +AL+ A +++K + +F+ LV+ GVKP+ Y+++V +D
Sbjct: 184 YGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNK 243
Query: 160 ALSVIDEMVNAGFAPS 175
A +I++ G + S
Sbjct: 244 AKEIINQAEGNGCSLS 259
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 73 INCVILGC-ANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
I V++ C + D ++A + +A G+ G + I +YN I K K+ +EA V
Sbjct: 227 IYTVVVKCLCELKDFNKAKEIINQAEGN--GCSLSIVTYNVFINGLCKSKRVWEAVEVKR 284
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
L G+K + ++Y LV ++ + + ++DEM+ G+ PS+
Sbjct: 285 SLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSE 330
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y LI FG+ K A F ++ G+ SY+ +++ K A
Sbjct: 395 GLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMA 454
Query: 161 LSVIDEMVNAGFAPSKET 178
+ EMV+ G P+ T
Sbjct: 455 ELLFKEMVDKGLKPTVAT 472
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +Y +LI + K +A +++ + G+ PN ++++ L+ A
Sbjct: 465 GLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEA 524
Query: 161 LSVIDEMVNAGFAPSKET 178
+ DEMV P++ T
Sbjct: 525 SKLFDEMVELKILPNEVT 542
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
LV C + G+ ++ +F E LS+ P + A N I+G I D A+ E +
Sbjct: 431 LVNGCFKLGYVSMARGFFN-EMLSKGLKPDR--FAYNTRIVGEMKIADTSVAFSMQEEML 487
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G PD+ +YN ++A + EA + E++VS G+ P+ ++Y+ +++ + N
Sbjct: 488 AA-GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHL 546
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A V +EM++ G APS T
Sbjct: 547 RKAREVFNEMLSKGVAPSVVT 567
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI +Y L+ KL A F ++S G+KP+ +Y+ + + D A
Sbjct: 420 GLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVA 479
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALA 202
S+ +EM+ AGF P T V C + EE+ D +E +
Sbjct: 480 FSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMV 522
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
FG+ P + +YN ++ ++ K + +A + + G PN ++Y++LV+ + +
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELE 267
Query: 159 AALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
A +I+EM+N+G S T + C + + E+ D VE + +
Sbjct: 268 QAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LS+ P SV +I A LD A+ F + + ++ +YNA+I
Sbjct: 555 EMLSKGVAP--SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEK-SVPANVITYNAIINGLC 611
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
++ EA + F+ + G+ PN SY++L++ + AL + EM++ P
Sbjct: 612 MTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSF 671
Query: 178 TLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
T + R+ + VE+L + + +N
Sbjct: 672 THSVFLKNLHRDYQVHAVQCVESLIQNVEDNINV 705
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
TPDI S+N+L+Y + + EA +F+ L + P ++Y+ L+ AAL
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ EM + G P T + C +
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFK 437
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
GC + + A F + S GL PD +YN I K+ T A + E +++ G
Sbjct: 434 GCFKLGYVSMARGFFNEMLSK-GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFP 492
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
P+ ++Y++ V A + + A +++ MV+ G P T +
Sbjct: 493 PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSI 536
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ + N ++ +A V+ + G+KP ++Y+ ++D++ A
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQA 234
Query: 161 LSVIDEMVNAGFAPSKET 178
L ++ EM G P+ T
Sbjct: 235 LELLSEMQERGCYPNDVT 252
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G N+ DL+ A FE + + G +P++ +Y LI F K +K A +
Sbjct: 211 NVVVYNALIDGYCNVGDLELAVDVFERMDVN-GCSPNVRTYTELISGFCKSRKLDRAMML 269
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F +V G+ PN ++Y+ L+ ++ A ++ M N+G P++ T
Sbjct: 270 FSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWT 319
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR QT S G PD H+Y++LI + K+ EA V + ++ GV+P+ ++Y++
Sbjct: 372 DRLMQTL----VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTI 427
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++D + + ++D+M+ AG P
Sbjct: 428 IIDELVREVGADGSKKILDKMIAAGIKP 455
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +LI K + A R+ + LVS G P+A +YS L+D ++ A+ V+D+M+
Sbjct: 355 YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414
Query: 169 NAGFAPSKETLKKVRRRCVREMDEESNDRV 198
G PS T + VRE+ + + ++
Sbjct: 415 EKGVQPSPVTYTIIIDELVREVGADGSKKI 444
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
G+ P++ +YNALI + L T +A F+H+V+ G KPN SY++L+
Sbjct: 487 GVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLL 534
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G + LD AY+ +++ +S GL P+ + + LI A K ++ EA +
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRLLQSMENS-GLVPNEWTCSVLIDALCKHERVGEAQLL 339
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ G+K N + Y+ L+D AA ++ +V+ GF P T
Sbjct: 340 LGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHT 389
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
R +T + + G P++ YNALI + + A VFE + G PN +Y+ L
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +R A+ + MV+AG P+ T
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT 284
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD H Y +++ +T EA + ++ G +PN + Y+ L+D + D + A
Sbjct: 172 GCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELA 231
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V + M G +P+ T
Sbjct: 232 VDVFERMDVNGCSPNVRT 249
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y + ++ + +A + H+V GV PN ++Y+ L+ + A
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQA 511
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196
S MV G P++E+ + R +++ E SN+
Sbjct: 512 FSTFKHMVANGCKPNEESYTVLLRLLIKK--ESSNN 545
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD++SY+ LI K K +A+ +
Sbjct: 121 SVVSYNTLMNGYXRLGDLDEGFRLKSAMLAS-GVQPDVYSYSVLINGLCKESKMDDANEL 179
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H A+ + M++ P T + +
Sbjct: 180 FDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 239
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ND ++ + K
Sbjct: 240 KGDLKQANDLIDEMGMK 256
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ SY
Sbjct: 102 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSY 160
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G AP+ T
Sbjct: 161 SVLINGLCKESKMDDANELFDEMLVKGLAPNGVT 194
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+++
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMHAS-GVHPDVYTYSVLINGLCKESKMDDANKL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTN---------------------------------- 154
F+ ++ G+ PN+++++ L+D H N
Sbjct: 235 FDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCK 294
Query: 155 -RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
D K A +IDEM G P K T + C +E D ++ + + +IR++
Sbjct: 295 KGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLD 351
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ + + GV P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANKLFDEMLEKGLVPNSVT 249
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKMMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
>gi|361070031|gb|AEW09327.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139485|gb|AFG50982.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139486|gb|AFG50983.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139487|gb|AFG50984.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139488|gb|AFG50985.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139490|gb|AFG50987.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139491|gb|AFG50988.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139492|gb|AFG50989.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
gi|383139493|gb|AFG50990.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
Length = 164
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G N LD+AY + + G+ D +YNALI L K EA+++FE
Sbjct: 30 AVYTCLITGYGNKKKLDKAYGLLQEMKEK-GIRHDCRTYNALIKVMMILHKPDEATKLFE 88
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G +P +Y++++ + R+ + ++ D+M G P
Sbjct: 89 EMSQCGFQPTIHTYNMMMKLYFRARNPEMGFAIWDQMARNGCCP 132
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 9/169 (5%)
Query: 6 RAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSR 62
RA L + E A +M+E SP + V C G+ + LD Y L+ + +
Sbjct: 2 RALSKLQKMEEA-SKFFAEMQEHGSPLDAA---VYTCLITGYGNKKKLDKAYGLLQEM-K 56
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
+ N +I + D A + FE + S G P IH+YN ++ + + +
Sbjct: 57 EKGIRHDCRTYNALIKVMMILHKPDEATKLFEEM-SQCGFQPTIHTYNMMMKLYFRARNP 115
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+++ + G P+ SY++ + + + A + I+ M++ G
Sbjct: 116 EMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+++
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKENKMDDANKL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ + PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ND ++ ++ K
Sbjct: 295 KGDLKQANDLIDEMSMK 311
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ P+ T
Sbjct: 216 SVLINGLCKENKMDDANKLFDEMLVKALVPNGVT 249
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D + D + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 162 SVIDEMV 168
M+
Sbjct: 332 EYRKRMI 338
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
Length = 561
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 77 ILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+L C W D + ++ +A L PD+ SY AL+ A+ K ++ A F+ +++
Sbjct: 303 LLACQKTWKDAEDVFRKLQAAK----LDPDVFSYTALVNAYAKARRAECAHAAFDDMIAA 358
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++P ++Y+ L++A+ +D + A +V+ +M G P+ E+
Sbjct: 359 GIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVES 401
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +YNALI A+ K K A V + + G P SY+ L+ A+++ A
Sbjct: 359 GIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKA 418
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
+ M A P+ +T CV + ++++ + + F+
Sbjct: 419 EQTVLRMKEADLQPNLQTF------CVLMTGYANGNKLDNMMRSFE 458
>gi|223949307|gb|ACN28737.1| unknown [Zea mays]
Length = 488
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C +D A +G P HSYN +I K + +A +VF +
Sbjct: 179 NVLIEVCVKAGGMDEAVHWLRQMGYDGMEPPSAHSYNLVIAGLWKAGRGDDAVKVFGEMA 238
Query: 134 SLGVKPNAMSYSLLVDAHLT------------NRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN +Y+++++ HL N D +AAL+++D+MV GF P + T
Sbjct: 239 DMLVAPNHFTYTVMINGHLKRLSSVLSSRKNENGDLEAALALLDQMVRDGFKPHEYT 295
>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N ++ G I +DRA E V P++ SY +I + +L K EAS +F
Sbjct: 248 IVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLF 307
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+V G KPN ++S LVD + D +AL + +++ G AP+ TL +
Sbjct: 308 YEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSL 360
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC+ +D A+ + + S+ LTP+I +YN+LIY K A +F L S
Sbjct: 687 LIHGCSASGSIDLAFGLRDEMLSAR-LTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSK 745
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PNA++Y+ L+D H + + A + +M+ G P+
Sbjct: 746 GISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPT 785
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 38 LVVACSRKGFETLDSVY-FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ CS G ++D + + E LS P ++ N +I G ++ RA F +
Sbjct: 687 LIHGCSASG--SIDLAFGLRDEMLSARLTP--NIVTYNSLIYGLCKSCNVSRAVSLFNKL 742
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G++P+ +YN LI K T EA ++ + ++ G++P +Y++L+ T
Sbjct: 743 QSK-GISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGY 801
Query: 157 QKAALSVIDEMVNAGFAPS 175
+ A+ ++D+M+ P+
Sbjct: 802 MEEAIKLLDQMIENNVDPN 820
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL ++ + N +I K ++ EA +F + ++++Y L+D + D A
Sbjct: 440 GLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRA 499
Query: 161 LSVIDEMVNAGFAPSKE 177
+ EM N GF PS E
Sbjct: 500 TQIRIEMENLGFVPSVE 516
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y LI+ EA ++ + ++ V PN ++Y L+ + + KA
Sbjct: 781 GIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAI 840
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM G P+ T
Sbjct: 841 TKLYNEMHICGLLPANWT 858
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ S G+ DI SYN ++ K EA +F
Sbjct: 510 IGIYNIIIHGMCNANKVDDAWSLFCSLPSK-GVKRDIQSYNIMLSGLCKRSSLSEADALF 568
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G +P+ +Y+ L+ AHL D ++ +I+EM GF+ T+K V
Sbjct: 569 RKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIV 621
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E ++R P + N +I G N LD A Q + + S G PDI +YN LI F
Sbjct: 360 EMITRGIEP--NTITYNSLIYGLCNDKRLDEANQMMDLMVSK-GCDPDIWTYNILINGFC 416
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K+ + R+F + G+ + ++YS L+ +R A V EMV+ G P
Sbjct: 417 KAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIM 476
Query: 178 T 178
T
Sbjct: 477 T 477
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ +L ++ + N +I G +D + F + S G+ D +Y+ LI
Sbjct: 391 QMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKM-SLRGMIADTVTYSTLIQG 449
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
F + +K A +VF+ +VS GV P M+Y++L+D N + + AL ++D+M
Sbjct: 450 FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQM 501
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TP++ +++ALI + K K EA ++ +++ G++PN ++Y+ L+ ++ A
Sbjct: 331 ITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEAN 390
Query: 162 SVIDEMVNAGFAP 174
++D MV+ G P
Sbjct: 391 QMMDLMVSKGCDP 403
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A F + + G+ ++ +YN+LI +F + + +++ +++ + PN +++S
Sbjct: 281 LDDALSFFSEMETK-GIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFS 339
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
L+D+ + A + +EM+ G P+ T + C + +E+N ++ + K
Sbjct: 340 ALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSK 399
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 157 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 215
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 138 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 196
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 197 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y ALI + ++ +A ++ ++++
Sbjct: 304 LIDGCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNV 362
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP++ +Y+++++ D ++ EM G PS
Sbjct: 363 GLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 402
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 159 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 217
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H + A+ + +M++ +P T + +
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 278 KGDLKQAHDLIDEMSMK 294
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 140 DIRVAQSVFNAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTY 198
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM++ G P+ T
Sbjct: 199 SVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 232
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ + + D+ +Y ALI + + +A +V ++S
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRYLDAEKVLREMLSA 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ EM G PS
Sbjct: 365 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 404
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 261 LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAF 320
Query: 162 SVIDEMVN 169
M+
Sbjct: 321 EHRKRMIQ 328
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G L RA I NE E+ P Y V+A + + D+V + +
Sbjct: 405 GMLDRATIIFNEMR----------EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMID 454
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P S++ + +I G DL +A + + G+ PDI +N +I KL +
Sbjct: 455 QGVAP--SISTYHFLIQGFCTHGDLLKAKDLVLQMMNK-GMRPDIGCFNFIINNLCKLGR 511
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+A +F+ +S+G+ PN M Y+ L+D + + AL V D MV+AG P+
Sbjct: 512 VMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPN 565
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P++ YN L+ + + K A RVF+ +VS G++PN + Y LV+ +
Sbjct: 524 SIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRID 583
Query: 159 AALSVIDEMVNAGFAPS 175
LS+ E+++ G PS
Sbjct: 584 EGLSLFREILHKGIKPS 600
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD H +N LI A+ K A+ +F + GV+P+ ++YS ++ A
Sbjct: 384 SDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMD 443
Query: 159 AALSVIDEMVNAGFAPSKET 178
A+ ++M++ G APS T
Sbjct: 444 DAVEKFNQMIDQGVAPSIST 463
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N VI G D+++A F + G++PD+ +YN ++ A K + +A +
Sbjct: 218 AYNTVIDGFFKEGDVNKACDLFNEMVQR-GISPDLSTYNCVVNALCKARAMDKAEAILRQ 276
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVREM 190
+V GV P+ +Y+ L+ + + K A+ V +M + G P TL + C
Sbjct: 277 MVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK 336
Query: 191 DEESNDRVEALAKK--------FDIRMNTENRKNILFNL 221
+++ D +++A K + I +N K L +L
Sbjct: 337 IKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDL 375
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E + R P ++ NCV+ +D+A + G+ PD +YN+LIY +
Sbjct: 241 EMVQRGISP--DLSTYNCVVNALCKARAMDKAEAILRQMVDK-GVLPDNWTYNSLIYGYS 297
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ EA RV + + S G+ P+ ++ + L+ + + K A V D M G
Sbjct: 298 STGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKG 351
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
G PD+ SY ++ + +K+ +A + + G PNA++Y+ ++D D
Sbjct: 173 LGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDV 232
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
A + +EMV G +P T V + + D+ EA+ ++
Sbjct: 233 NKACDLFNEMVQRGISPDLSTYNCVVNALCK---ARAMDKAEAILRQM 277
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ +V N ++ G + ++ A + F+ + S+ G+ P++ Y L+ + K+ + E
Sbjct: 528 HPNVMVYNTLMDGYCLVGKMENALRVFDVMVSA-GIQPNVVVYGTLVNGYCKVGRIDEGL 586
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+F ++ G+KP+ Y++++ A EM +G A + T
Sbjct: 587 SLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYT 638
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ PD+ + N+L+ + K K +A VF+ + G K + SY ++++ + T
Sbjct: 313 TSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCL 372
Query: 158 KAALSVIDEMVNAGFAP 174
+ + M++ G AP
Sbjct: 373 VDLTELFNLMLSDGIAP 389
>gi|383139489|gb|AFG50986.1| Pinus taeda anonymous locus UMN_4763_01 genomic sequence
Length = 164
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G N LD+AY + + G+ D +YNALI L K EA+++FE
Sbjct: 30 AVYTCLITGYGNKKKLDKAYGLLQEMKEK-GIRHDCRTYNALIKVMMILHKPDEATKLFE 88
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G +P +Y++++ + R+ + ++ D+M G P
Sbjct: 89 EMSQYGFQPTIHTYNMMMKLYFRARNPEMGFAIWDQMARNGCCP 132
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 6 RAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSR 62
RA L + E A +M+E SP + V C G+ + LD Y L+ + +
Sbjct: 2 RALSKLQKMEEA-SKFFAEMQEHGSPLDAA---VYTCLITGYGNKKKLDKAYGLLQEM-K 56
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
+ N +I + D A + FE + S +G P IH+YN ++ + + +
Sbjct: 57 EKGIRHDCRTYNALIKVMMILHKPDEATKLFEEM-SQYGFQPTIHTYNMMMKLYFRARNP 115
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+++ + G P+ SY++ + + + A + I+ M++ G
Sbjct: 116 EMGFAIWDQMARNGCCPDVNSYTVFIGGLIREGRSEEACACIESMIDKG 164
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 66 PYKSVAAINCV----ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P K + A N + + G + D+D A+ E + S PD+H+YN LI K+K+
Sbjct: 433 PMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASE-NCMPDVHTYNTLIDGLCKVKR 491
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A + + + G++P ++++L+ L ++ A + ++M+++G P K+T
Sbjct: 492 LDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQT 548
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++LG L A F + +G D +SY LI + +A RVF +
Sbjct: 129 NCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMS 188
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
+P +Y++L+D R A +++ EMVN G P+ T + + + +E
Sbjct: 189 RGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNAL----IGGLCQE 244
Query: 194 SN-DRVEALAKKFDIRMNTEN 213
D V L +K +I+ ++ +
Sbjct: 245 GRFDDVTKLLEKMEIQRHSPD 265
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+DS + +E ++ +E V N +I G + LDRA + + G+ P ++
Sbjct: 457 IDSAFGLMEKMA-SENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQ-GIEPTTCTF 514
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL---TNRDQKAALSVIDE 166
N LI KK +A++++E ++S G KP+ +Y+L + +++ ++V+ E
Sbjct: 515 NILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVV-E 573
Query: 167 MVNAGFAPSKET 178
M AG P ET
Sbjct: 574 MHEAGVFPDVET 585
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD +Y +++ K K ++V + GV ++Y+ L++ + D KAAL
Sbjct: 263 SPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALD 322
Query: 163 VIDEMVNAGFAPSKETLKKV 182
V+ M P +T +V
Sbjct: 323 VLQLMKRNRVNPGVQTFNEV 342
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 8 FITLNEFETAY---GD-----SIID--MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQL 57
IT N F + Y GD +++ +E +P + L++ C + E D+
Sbjct: 454 LITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFK 513
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L P + N +I + D R+ + F + S GL+P++++YNA+I +F
Sbjct: 514 EMLEWGIKPNE--ITYNILIRSSCSTGDTGRSVKLFANMKES-GLSPNLYAYNAIIQSFC 570
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K+KK +A + + ++ +G+KP+ +YS L+ A + + A + M G P
Sbjct: 571 KMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDSY 630
Query: 178 TLKKVRRRCVREMD 191
T +R V E+D
Sbjct: 631 T-----KRLVEELD 639
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ AY F+ + S PD +YN LI+ K EA R+ + + G +PN +Y+
Sbjct: 190 LNLAYVKFQQMRSD-DCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYT 248
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+L+D L + AL ++ M P++ T++ +
Sbjct: 249 ILIDGFLIAGRIEEALKQLEMMQVRKLNPNEATIRTL 285
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL +++YNA+I K ++T A+ + G+ PN ++++ + + D K
Sbjct: 414 GLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKV 473
Query: 161 LSVIDEMVNAGFAP 174
V+++++ G P
Sbjct: 474 HGVVEKLLEHGCNP 487
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ALI + K K EA F+ ++ G++P+ ++YS+++D HL + K A
Sbjct: 496 GVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRA 555
Query: 161 LSVIDEMVNAGFAPSK-------ETLKKVRR-----RCVREMDE 192
+++ EM++ G TL+KV + R +R+M+E
Sbjct: 556 MTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEE 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C+ +L+ A + F+ + + PD+ +YNA+I +G+ + +A ++F L
Sbjct: 330 NTLISACSRASNLEEAAKVFDDM-EAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLE 388
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S G P+A+SY+ L+ A + + + +EMV GF + T
Sbjct: 389 SRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMT 433
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQK 158
G D +YN +I+ +GK + A +++ + S G P+A++Y++L+D+ TN+ +
Sbjct: 425 IGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAE 484
Query: 159 AALSVIDEMVNAGFAPSKET 178
AA V+ EM+N G P+ +T
Sbjct: 485 AA-GVMSEMLNTGVKPTLKT 503
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q + + SS G PD +Y LI + GK K EA+ V +++ GVKP +YS L+
Sbjct: 450 ALQLYRDMQSS-GRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALI 508
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
+ A D M+ +G P
Sbjct: 509 CGYAKAGKPVEAEETFDCMLRSGIRP 534
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +Y +L+ +FGK + +A +FE L S G K + Y ++ + + A
Sbjct: 1018 GLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKA 1077
Query: 161 LSVIDEMVNAGFAPSKETL 179
+ M +AG P+ T+
Sbjct: 1078 ERLFSMMKDAGVEPTIATM 1096
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + EA++VF+ + + +P+ +Y+ ++ + A
Sbjct: 321 GLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKA 380
Query: 161 LSVIDEMVNAGFAP 174
+ +++ + GF P
Sbjct: 381 EQLFNDLESRGFFP 394
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
+E FSP Y ++ +KG +LD Y L +S V + + C
Sbjct: 428 KEGFSPNIYTYNAIIDGLCKKG--SLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA- 484
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +R+ F + G TPDIHSY LI F + K+ E+ R+FE VSLG+ P +Y
Sbjct: 485 DTNRSLVFFNKM-LKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTY 543
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ + + A+ + M N G AP T
Sbjct: 544 TSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT 577
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + + RAY+ + +G G +P+I++YNA+I K EA R+ +
Sbjct: 406 LIDGHCKVGNFVRAYELMDLMGKE-GFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH 464
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
G++ + ++Y++L+ H D +L ++M+ GF P + + R+ + +
Sbjct: 465 GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKES 524
Query: 196 DRV 198
+R+
Sbjct: 525 ERL 527
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W ++A++ F + S G P++H+Y A+I + K K A + + G+ P
Sbjct: 340 CKKGWT-EKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
N +Y+ L+D H + A ++D M GF+P+
Sbjct: 399 NTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ + +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNXMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L+N +A V + +I G +D A + F+ + + GL P+ ++ LI
Sbjct: 191 FRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN-GLVPNGVTFTTLID 249
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K + A +++ ++S + P+ ++Y+ L+ D K A + DEM G P
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKP 309
Query: 175 SKET 178
K T
Sbjct: 310 DKIT 313
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320
>gi|440803763|gb|ELR24646.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 579
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEP----PYKSVAAINCVILGCANIWDLDRAYQTF 93
LV A SR +D VY +E L +E P +N +I C+ +A+ TF
Sbjct: 365 LVEAMSR-DCRVIDDVYVHVEQLQSSEDVEVDPDVMRTYLNLIIEACSQTQQFSKAFDTF 423
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA-SRVFEHLVSLGVKPNAMSYSLLVDAHL 152
A+ SFGL PD+ S++A++ + A ++V++ L ++P A ++ ++ A L
Sbjct: 424 AAL-ESFGLKPDVQSFHAVLKGICSVPGHLAAVTQVYDQLAKNDLRPTAETFHHVISAFL 482
Query: 153 TNRDQKAALSVI----DEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALA 202
N + + L ++ D VN G+ ++K+ R E+ E + +E+L
Sbjct: 483 VNNELQNGLELLGVARDLEVNVGYDTCAMIVRKMARVQHTELLERAQQAMESLG 536
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G GLTP+ S + L+ A+ R E + G++P+A + L+ + +
Sbjct: 173 GVRHGLTPNATSQHLLVLAYVNAGDFRRGWRQVEVMKEKGIQPSAEVFHALLSSSMLRAL 232
Query: 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESN 195
+ + V++EMV G K +++V C+R ++D+ N
Sbjct: 233 PRNTIQVVEEMVRLGIKLRKNDVQQVLDICLRNEQLDDLQN 273
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 102 LTPDIHSYNALIYAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD+ YN L+ + K+ +F + + + V G+ PNA S LLV A++ D +
Sbjct: 141 IQPDLDIYNGLLNCLAEAKQGSSFGIASILLYGVRHGLTPNATSQHLLVLAYVNAGDFRR 200
Query: 160 ALSVIDEMVNAGFAPSKE 177
++ M G PS E
Sbjct: 201 GWRQVEVMKEKGIQPSAE 218
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 159 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKIDDANEL 217
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN+++++ L+D H N A+ + +M++ +P
Sbjct: 218 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 140 DIRIAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 198
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 199 SVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 232
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ Y ALI + + +A ++ ++S+
Sbjct: 306 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDV-VYTALISGLCREGXSVDAEKMLREMLSV 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 365 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 407
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 246 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYT 304
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D + D A M+
Sbjct: 305 TLIDGCCKDGDLDTAFEHRKRMIQ 328
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N V+ + LD+ +Q + +G + GLTPD+H+YN L++ GK K A +
Sbjct: 284 VLTYNVVLRAKYMLGKLDQFHQLLDEMGKN-GLTPDLHTYNLLLHVLGKGDKPLAALNLL 342
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ +G +PN + ++ L+D + +A DEM+ G P
Sbjct: 343 NYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDP 387
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)
Query: 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
L+P V+ C + ++ QLE + Y A N +I+G + D AY E
Sbjct: 60 LFPWVL-CKANRLDEAVELFEQLEQNRKVPCAY----AYNTMIMGYGSAGKFDEAYGLLE 114
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ G P + +YN ++ GK ++ EA R+FE + V PN +Y++L+D
Sbjct: 115 RQKAK-GSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCRE 172
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
AAL + D+M AG P+ T+ + R C + EE+ E + K
Sbjct: 173 GKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 223
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+ LD Y E +++ +V + +I G + +D AY E + GLTP++
Sbjct: 417 IDRLDEAYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNV 474
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+++N L+ A K ++ EA F+ + L PN ++YS+L++ R A E
Sbjct: 475 YTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQE 534
Query: 167 MVNAGFAPSKET 178
M G P+ T
Sbjct: 535 MQKLGLKPNTIT 546
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N VI G +++AYQ E + G P + +Y ++I K+ + EA +FE
Sbjct: 371 AYNAVIDGFCKSGKVNKAYQLLEEMKVK-GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S G+K N + YS L+D A +++E++ G P+
Sbjct: 430 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 473
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ +V +N +I L+ A FE + TP+ ++++LI GK + +A
Sbjct: 191 FPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV-CTPNAVTFSSLIDGLGKCGRVDDAY 249
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
++E ++ G P A+ Y+ L+ + ++ + EMV+ G +P TL C
Sbjct: 250 SLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL-TLINTYMDC 308
Query: 187 VREMDEESNDR 197
V + E R
Sbjct: 309 VFKAGETEKGR 319
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ + N +I K +K EA +FE + PNA+++S L+D A
Sbjct: 189 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDA 248
Query: 161 LSVIDEMVNAGFAPSKETLKKVRR---RCVREMD 191
S+ ++M++ G P + R +C R+ D
Sbjct: 249 YSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKED 282
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D Y LE +A+ SV A NC++ ++ A + FE + P++ +YN
Sbjct: 107 DEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRD--AVPNVPTYN 163
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
LI + K A + + + G+ PN ++ ++++D + + A S+ + M +
Sbjct: 164 ILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 223
Query: 171 GFAPSKET 178
P+ T
Sbjct: 224 VCTPNAVT 231
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G N +D A+ F ++ S G+ PD+ +YN +I K EA +
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G P+ +Y++L+ AHL +++ +I+EM GF+ T+K V
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 601
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A Q F+ + S G PDI +Y+ LI ++ K K+ + R+F + S G+ PN ++Y+
Sbjct: 366 LHEANQMFDLMVSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV + AA + EMV+ G PS T
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + F + SS GL P+ +YN L+ F + K A +F+ +VS GV P+ ++Y
Sbjct: 401 VDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Query: 146 LLVDAHLTNRDQKAALSVIDEM 167
+L+D N + AL + ++M
Sbjct: 460 ILLDGLCDNGELNKALEIFEKM 481
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN+LI F K EA+++F+ +VS G +P+ ++YS+L++++ +
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + E+ + G P+ T
Sbjct: 405 MRLFREISSKGLIPNTIT 422
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
WD D A E +G + + PD+ +++ALI F K K EA ++ +++ G+ P+ ++
Sbjct: 296 WD-DGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+D A + D MV+ G P
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 93 FEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
F +G ++ G PD +++ L+ F + EA + + +V + +P+ ++ S L++
Sbjct: 125 FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLING 184
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
AL +ID MV GF P + T V R
Sbjct: 185 LCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +Y++LI K + +++ ++ + P+ +++S L+D + A
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM+ G AP T
Sbjct: 335 KELYNEMITRGIAPDTIT 352
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G N +D A+ F ++ S G+ PD+ +YN +I K EA +
Sbjct: 518 GIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADML 576
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G P+ +Y++L+ AHL +++ +I+EM GF+ T+K V
Sbjct: 577 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 630
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A Q F+ + S G PDI +Y+ LI ++ K K+ + R+F + S G+ PN ++Y+
Sbjct: 395 LHEANQMFDLMVSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 453
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV + AA + EMV+ G PS T
Sbjct: 454 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 486
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + F + SS GL P+ +YN L+ F + K A +F+ +VS GV P+ ++Y
Sbjct: 430 VDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 488
Query: 146 LLVDAHLTNRDQKAALSVIDEM 167
+L+D N + AL + ++M
Sbjct: 489 ILLDGLCDNGELNKALEIFEKM 510
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN+LI F K EA+++F+ +VS G +P+ ++YS+L++++ +
Sbjct: 374 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 433
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + E+ + G P+ T
Sbjct: 434 MRLFREISSKGLIPNTIT 451
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
WD D A E +G + + PD+ +++ALI F K K EA ++ +++ G+ P+ ++
Sbjct: 325 WD-DGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 381
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+D A + D MV+ G P
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEP 412
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 93 FEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
F +G ++ G PD +++ L+ F + EA + + +V + +P+ ++ S L++
Sbjct: 154 FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLING 213
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
AL +ID MV GF P + T V R
Sbjct: 214 LCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 248
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +Y++LI K + +++ ++ + P+ +++S L+D + A
Sbjct: 304 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 363
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM+ G AP T
Sbjct: 364 KELYNEMITRGIAPDTIT 381
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + ++ G I D D A++ + G+ PD +Y++LI + ++ +A +F
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKK-GVVPDAITYSSLIRGLCEERRLGDACELF 458
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E ++ LG++P+ +Y+ L+D H + + ALS+ DEM+ G P
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLP 503
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL- 60
G+L+RA + + + + M E FT+L + R GF LD ++ +
Sbjct: 309 GNLERAVALVGQMR----ERGLRMNEF--TFTAL---IDGFCRNGF--LDDALLAMKEMR 357
Query: 61 -SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
R +P SV N +I G + +D A + + + G+ PD+ +Y+ ++ + K+
Sbjct: 358 ECRIQP---SVVCYNVLINGYCKLGRMDEARELIHEMEAK-GMKPDVVTYSTILSGYCKI 413
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
T A + ++ GV P+A++YS L+ R A + ++M+ G P + T
Sbjct: 414 GDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEI-FSPFTSLY-PLVVACSRKGFETLDSVYFQLENLS 61
L RA + E A G DM +P Y LV A R G +D+ +L +
Sbjct: 160 LVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG--EVDAAE-RLVGVM 216
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R S+ N V+ G ++ A + F+ + GLTPD SYN L+ + K
Sbjct: 217 REGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMARE-GLTPDGVSYNTLVSGYCKAGC 275
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
EA VF + GV P+ ++++ L+ A + + A++++ +M G
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGL 326
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + YN LI + KL + EA + + + G+KP+ ++YS ++ + D +A
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ +M+ G P T + R E
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEE 448
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN L+ AF + + A R+ + GV+P+ ++++ +V+ + A
Sbjct: 185 GCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDA 244
Query: 161 LSVIDEMVNAGFAP 174
+ DEM G P
Sbjct: 245 RKMFDEMAREGLTP 258
>gi|242063722|ref|XP_002453150.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
gi|241932981|gb|EES06126.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
Length = 757
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 246 GVAPDVSTYNTLIWGFGLCKKMETAVRVFGEMKGHGVTPDVTTYNALLNAWVRTGDLESA 305
Query: 161 LSVIDEMVNAGF 172
V DEM G
Sbjct: 306 RKVFDEMTGKGI 317
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V+ N +I G ++ A + F + G+TPD+ +YNAL+ A+ + A +VF
Sbjct: 251 VSTYNTLIWGFGLCKKMETAVRVFGEM-KGHGVTPDVTTYNALLNAWVRTGDLESARKVF 309
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G++ N++SY++++ ++ + A+++ EM G S++T
Sbjct: 310 DEMTGKGIERNSVSYNVMIKGYVEGNRVEEAVALFAEMGEKGLRLSEKT 358
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + PD + ALI A+G+ EA ++F + LGV A+SY+ ++ A L +
Sbjct: 174 SFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMMPDLGVPRTALSYNAVLKAILCRGREA 233
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ G AP T
Sbjct: 234 MARRIYNAMIADGVAPDVST 253
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 88 RAYQTFEAVGSSFGLTPDIH------SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
RA EAV F + PD+ SYNA++ A + A R++ +++ GV P+
Sbjct: 193 RAAIPQEAV-KLFRMMPDLGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDV 251
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+Y+ L+ + + A+ V EM G P T + VR D ES +V
Sbjct: 252 STYNTLIWGFGLCKKMETAVRVFGEMKGHGVTPDVTTYNALLNAWVRTGDLESARKV 308
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A G L+PD +Y+ +I GK A R+F +V G PN +++++++
Sbjct: 442 YQRMQAAG----LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 497
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ + AL + +M NAGF P K T
Sbjct: 498 LHAKARNYETALKLYRDMQNAGFQPDKVT 526
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF+ + G +P+ ++Y L+D H A
Sbjct: 379 GCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA 438
Query: 161 LSVIDEMVNAGFAP 174
+ + M AG +P
Sbjct: 439 MDMYQRMQAAGLSP 452
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +R+ + +V G KPN ++Y+ L+ ++ A
Sbjct: 344 GFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEA 403
Query: 161 LSVIDEMVNAGFAPSKET 178
++V +M AG P + T
Sbjct: 404 MNVFKQMQEAGCEPDRVT 421
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++ + + GL P++ + N+L+ F ++ + EA + + +++LG+ P+ +Y
Sbjct: 574 NVEKAWQWYQEMLHA-GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTY 632
Query: 145 SLLV 148
+LL+
Sbjct: 633 TLLL 636
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N VI G ++D A++ + + GL D+ +Y+ LI FGK K+ EA +
Sbjct: 270 SLVTYNVVIGGLCRAGEVDEAFE-LKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
E + S G+KP ++Y+ L+D + D A V +EM+ G + T + + +
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388
Query: 189 EMDEESNDRVEALAKKFDIRMNTENRKNIL 218
D E D + I+ +T+ N++
Sbjct: 389 FGDMEKADALLNEMIMVGIKPDTQTYNNMI 418
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +A+Q E + G++P+I +YNALI K + A +F+ +
Sbjct: 660 NSIISGFCKQGGIGKAFQLHEYMCQK-GISPNIITYNALINGLCKAGEIERARELFDGIP 718
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G+ NA++Y+ ++D + + + A + DEM G P + C +E + E
Sbjct: 719 GKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTE 778
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 2 GDLQRAFITLNEF-ETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
G LQ A L+EF E + I S F C + G FQL
Sbjct: 635 GKLQGAMELLSEFLEKGLVPDVFTYNSIISGF---------CKQGGI----GKAFQLHEY 681
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ ++ N +I G +++RA + F+ + GL + +Y +I + K
Sbjct: 682 MCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK-GLAHNAVTYATIIDGYCKSG 740
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+A R+F+ + GV P++ YS L+D + + ALS+ E V GFA +
Sbjct: 741 NLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAST 795
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P ++ +I + +ASRVFE +VSLGVKPNA+ Y+ L+ H+ + A+
Sbjct: 442 LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV 501
Query: 162 SVIDEMVNAGFAP 174
++ M G P
Sbjct: 502 RILKVMDKKGVQP 514
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ YN++I K +K EA ++ G+KPN +Y L+ + + + + A
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVA 570
Query: 161 LSVIDEMVNAGFAPS 175
EM+ G AP+
Sbjct: 571 DRYFKEMLGCGIAPN 585
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P+ +Y AL+ + + E +F+ +++ ++P+ +++S+++DAHL D L
Sbjct: 861 LMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTL 920
Query: 162 SVIDEMVNAGFAPSK 176
++D+M+ G SK
Sbjct: 921 KLVDDMLKKGGNVSK 935
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 47 FETLDSVYFQLENLSRA-----EPPYKSVA----AINCVILGCANIWDLDRAYQTF-EAV 96
+ T+ Y + NLS+A E K V + +I GC + ++A F E+V
Sbjct: 729 YATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESV 788
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
F T S NAL+ F K K EA+++ E +V VKP+ ++Y++L+D H
Sbjct: 789 QKGFASTS---SLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGF 845
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
K A +M P+ T
Sbjct: 846 LKEAEQFFVDMQKRNLMPNALT 867
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++Y ALI+ + K + A R F+ ++ G+ PN + + L+D + A
Sbjct: 546 GLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEA 605
Query: 161 LSVIDEMVNAGFAPSKET 178
S+ M+ P T
Sbjct: 606 TSIFRCMLGRSVHPDVRT 623
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN++I F K +A ++ E++ G+ PN ++Y+ L++ + + A
Sbjct: 651 GLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERA 710
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D + G A + T
Sbjct: 711 RELFDGIPGKGLAHNAVT 728
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ ALI + K T EA+ +F ++ V P+ +YS L+ L N + A
Sbjct: 581 GIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA 640
Query: 161 LSVIDEMVNAGFAP 174
+ ++ E + G P
Sbjct: 641 MELLSEFLEKGLVP 654
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 49/110 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ +YNAL+ K +A + ++ +G+KP+ +Y+ +++ +L ++
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRV 430
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
++ EM + P+ T + R E RV + ++ N
Sbjct: 431 KDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPN 480
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV------- 76
DME+ + + + + + + + Y + +N SR + + N V
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450
Query: 77 --ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
I G ++ A + FE + S G+ P+ Y LI + + EA R+ + +
Sbjct: 451 MIINGLCRHGSIEDASRVFEIM-VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDK 509
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+P+ + Y+ ++ +R + A + EM+ G P+
Sbjct: 510 KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPN 550
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
+E FSP Y ++ +KG +LD Y L +S V + + C
Sbjct: 428 KEGFSPNIYTYNAIIDGLCKKG--SLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA- 484
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +R+ F + G TPDIHSY LI F + K+ E+ R+FE VSLG+ P +Y
Sbjct: 485 DTNRSLVFFNKM-LKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTY 543
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ + + A+ + M N G AP T
Sbjct: 544 TSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT 577
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + + RAY+ + +G G +P+I++YNA+I K EA R+ +
Sbjct: 406 LIDGHCKVGNFVRAYELMDLMGKE-GFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH 464
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
G++ + ++Y++L+ H D +L ++M+ GF P + + R+ + +
Sbjct: 465 GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKES 524
Query: 196 DRV 198
+R+
Sbjct: 525 ERL 527
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W ++A++ F + S G P++H+Y A+I + K K A + + G+ P
Sbjct: 340 CKKGWT-EKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
N +Y+ L+D H + A ++D M GF+P+
Sbjct: 399 NTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPN 434
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 37 PLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
PL+ C +G +E LD +++ EP +V A N +I G + L+ A Q +
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQD--GCEP---NVVAYNTLIHGLCSNGSLEEALQVCD 373
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ S G P++ +Y+ LI F K AS + ++S G +PN ++Y+ +VD N
Sbjct: 374 QMQRS-GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
A S++++M G P+ T ++ C N RVE K
Sbjct: 433 SMFDQANSLVEKMTLEGCTPNTITFNTFIKGLC-------GNGRVEWAMK 475
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +IH++ LI K +EA +++ ++ G +PN ++Y+ L+ +N + A
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368
Query: 161 LSVIDEMVNAGFAPSKET 178
L V D+M +G P+ T
Sbjct: 369 LQVCDQMQRSGCLPNVTT 386
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C+I G + ++A + F +G FG P + YN L+ A K + ++ ++
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGE-FGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN +Y++L+ A N AA + EM N G P T
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVT 216
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKA 159
G PD +YN +I+A+ K K A+++ E + S+ P+ ++Y+ L+ + +
Sbjct: 554 GTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEE 613
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRR 184
A++ +D+ +N G P+ T + R
Sbjct: 614 AMAFLDKAINQGICPNFATWNALVR 638
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ A+ F+ + + L P++ +YN ++Y F + EA ++F + G P++++Y+
Sbjct: 506 EEAFGLFQEI-EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Query: 147 LVDAHLTNRDQKAALSVIDEM 167
++ A+ K A +++ +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERV 585
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 37 PLVVACSR--KGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILGCANIWDLDRAYQTF 93
P V+ C++ KGF + + ++ + E K V A N VI G +D A +
Sbjct: 110 PDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVL 169
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ + G PD+ +YN LI F + A RV + L+ KP ++Y++L++A +T
Sbjct: 170 DRMKKR-GFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATIT 228
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
A+ ++DEM++ G P + T V +E
Sbjct: 229 QGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKE 264
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI SYN+++ + K EA +FE L +G PNA SY+ L A ++ D+
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKI 443
Query: 159 AALSVIDEMVNAGFAPSKET 178
AL +I EM++ G P + T
Sbjct: 444 RALGMILEMLSNGIDPDEIT 463
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + LD ++ A+ +S G PD+++Y+ LI K K EA +
Sbjct: 170 SVVSFNTLMNGYIKMGILDEGFRLKNAMHAS-GAQPDVYTYSVLINGLCKESKMDEAHEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + ++++ G +P
Sbjct: 229 FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSP 274
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N LD A + ++ + S GL+PD+ +YN LIY F K + + + + G+KP
Sbjct: 252 CKN-GKLDLAMEIYKQILSQ-GLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKP 309
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+ ++Y+ L+D D + A +M+
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKKMI 338
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + K+ E R+ + + G +P+ +YS+L+
Sbjct: 155 AQLVFDAI-TKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM+ G P+ T
Sbjct: 214 NGLCKESKMDEAHELFDEMLEKGLVPNGVT 243
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y ALI K ++ +A ++ ++S+G+KP++ +Y+++++ N D ++ EM
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQ 408
Query: 169 NAGFAPS 175
G PS
Sbjct: 409 RDGHVPS 415
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSYNTLMNGYIRLGDLNEGFKLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
FE ++ G+ PN ++++ L+D H N A+ V +M++ P
Sbjct: 229 FEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLP 274
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E ++ + + GV+P+ +Y
Sbjct: 151 DIRLAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + +EM+ G P+ T
Sbjct: 210 SVLINGLCKESKMDDANELFEEMLVKGLVPNGVT 243
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMMREMLSF 375
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ EM G APS
Sbjct: 376 GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPS 415
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEVYKQMLSQ-SLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D A M+
Sbjct: 316 TLIDGCCKEGDLDTAFEHRKRMIQ 339
>gi|302780409|ref|XP_002971979.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
gi|300160278|gb|EFJ26896.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
Length = 136
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G N +D A + E + +S +PD+++Y +L+ F K+K+ EA RV + +
Sbjct: 6 LVEGYCNAGLVDDAERLLEEMVAS-DCSPDVYTYTSLVNGFCKVKRMVEAHRVLKRMAKG 64
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN ++Y+ L+DA A +++EMV G P+
Sbjct: 65 GCQPNVVTYTALIDAFCRAGKPMVAYKLLEEMVGNGVQPN 104
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y ALI AF + K A ++ E +V GV+PN ++Y L+ D + A
Sbjct: 65 GCQPNVVTYTALIDAFCRAGKPMVAYKLLEEMVGNGVQPNFITYRSLIGGFCGTGDLEEA 124
Query: 161 LSVIDEM 167
++ +
Sbjct: 125 HKMLKRL 131
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N +I G LD A + +S+G+ PD+ +YN+LIY + K A
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V + + G KPN SY++LVD A +V++EM G P+
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+++SY L+ F KL K EA V + + G+KPN + ++ L+ A A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + EM G P T +
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSL 500
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D Y L +S A+ + NC+I + A + F + G PD++++
Sbjct: 440 IDEAYNVLNEMS-ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKPDVYTF 497
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N+LI ++ + A + ++S GV N ++Y+ L++A L + K A +++EMV
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557
Query: 170 AG 171
G
Sbjct: 558 QG 559
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPDI ++N+LI + + + +F L + G+ P+ ++++ L+ A
Sbjct: 629 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Query: 161 LSVIDEMVNAGFAPSKET 178
++DE + GF P+ T
Sbjct: 689 CLLLDEGIEDGFVPNHRT 706
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRLAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 263 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D +A M+
Sbjct: 322 TLIDGCCKEGDLDSAFEHRKRMIQ 345
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 151 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 210 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y AL + ++ +A ++ ++S+
Sbjct: 317 LIDGCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSV 375
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+A +Y+++++ D ++ EM G PS
Sbjct: 376 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 415
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D +A M+
Sbjct: 316 TLIDGCCKEGDLDSAFEHRKRMIQ 339
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +LD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGNLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L+N +A V + +I G +D A + F+ + + GL P+ ++ LI
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN-GLVPNGVTFTTLID 249
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K + A +++ ++S + P+ ++Y+ L+ D K A + DEM G P
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKP 309
Query: 175 SKET 178
K T
Sbjct: 310 DKIT 313
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+APS
Sbjct: 408 QRDGYAPS 415
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDG 320
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+++AY+ F + GL PD H+Y LI+ EAS++++ +V + ++PN + Y
Sbjct: 367 DIEKAYEMFHLM-KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIY 425
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS------------KETLKKVRRRCVREMDE 192
+ +++ + + AL ++EMV G P+ K+ +R ++EM E
Sbjct: 426 NTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTE 485
Query: 193 ESNDRVEALAKK 204
E+L K
Sbjct: 486 AGLKPPESLCSK 497
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LE + RA + N ++ G N LD+A E + GL P + +YN LI F
Sbjct: 270 LERMKRAHIN-PTTRTFNMLMDGLCNTGQLDKALSYLEKL-KLIGLCPTLVTYNILISGF 327
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
K+ + S + + G+ P+ ++Y++L++ + + D + A + M G P +
Sbjct: 328 SKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQ 387
Query: 177 ET 178
T
Sbjct: 388 HT 389
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKG-FETLDSVYFQLEN 59
G++ + F L + ET SP +Y +++ AC R G + ++ ++++
Sbjct: 121 GNVSKGFELLAQMETMG----------VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDD 170
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L A Y IN D YQ + VG + P++++YN+LI + +
Sbjct: 171 LGLAANQYIYTIMING-FFKKGYKKDGFELYQKMKLVG----VLPNLYTYNSLITEYCRD 225
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
K A +VF+ + GV NA++Y++L+ A +++ M A P+ T
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRT 284
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L + D +A F +
Sbjct: 5 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 61
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 62 SS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 120
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 121 LEALSVFSEM 130
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 168 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 227
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 228 ANNLIQEMQSRGIEPNSIT 246
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKIDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN+++++ L+D H N A+ + +M++ +P
Sbjct: 235 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRIAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 250
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDV-VYTALISGLCREGQSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 263 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYT 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D + D A M+
Sbjct: 322 TLIDGCCKDGDLDTAFEHRKRMIQ 345
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G I DLD ++ ++V + G+ PD+++++ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKIGDLDEGFR-LKSVMQASGVQPDVYTHSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P
Sbjct: 229 FDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+++ + +GL P + S+N L+ + K+ E R+ + + GV+P+ ++S+L+
Sbjct: 155 AQSVFDSI-TKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM+B G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLBNGLVPNGVT 243
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D +Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++
Sbjct: 345 DDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404
Query: 165 DEMVNAGFAPSKET 178
EM G+ P+ T
Sbjct: 405 KEMQRXGYXPNXVT 418
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K + + + + G+KP+ ++Y+ L+D + D + A
Sbjct: 272 LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 162 SVIDEMV 168
M+
Sbjct: 332 EYRKRMI 338
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D V+ LE + R N +I G N D + AY E + + G PD+ SYN
Sbjct: 271 DEVFVVLEEM-RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAK-GCKPDVISYN 328
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+I K K EA+ +FE + G P+ SY +L D A ++DEMV
Sbjct: 329 VIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFK 388
Query: 171 GFAPSKETLKK 181
G+AP + K
Sbjct: 389 GYAPKSASKTK 399
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D Y+ LI A K+ + E V E + G KP+ ++Y+ ++ +D +AA V+
Sbjct: 253 DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL 312
Query: 165 DEMVNAGFAP 174
+EMV G P
Sbjct: 313 EEMVAKGCKP 322
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLEN 59
GDL R F F G I +P Y +++ C T S++ Q++
Sbjct: 113 GDLSRDF-----FRDMVGAGI-------APTVFTYNIMIGHVCKEGDMLTARSLFEQMKK 160
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ + N +I G I LD + FE + G PD+ +YNALI +F K
Sbjct: 161 MGLT----PDIVTYNTLIDGYGKIGLLDESVCLFEEM-KFMGCEPDVITYNALINSFCKF 215
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
K A F + +KPN +SYS L+DA + A+ +M G P++ T
Sbjct: 216 KGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFT 274
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A + F A+G + G+TP++ +Y ALI+ K++ +A +F + +KP+ + +
Sbjct: 323 MNEAEELFRAMGKA-GVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWG 381
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+V + + ++ EM +G +
Sbjct: 382 TIVWGLCSESKLEECKIIMTEMKESGIGAN 411
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ A +I G + +D+A + F + + PDI + +++ K E +
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREK-DIKPDILLWGTIVWGLCSESKLEECKII 399
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ G+ N + Y+ L+DA+ ++ A+++++EM + G
Sbjct: 400 MTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG 442
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRJAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+A +Y+++++ D ++ EM G PS
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPS 421
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 263 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D +A M+
Sbjct: 322 TLIDGCCKEGDLDSAFEHRKRMIQ 345
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E SP Y V+ AC+R G +E L ++ ++ R E V N ++ CA+
Sbjct: 199 QERVSPSILTYNTVINACARGGLDWEGLLGLFAEM----RHEGIQPDVITYNTLLGACAH 254
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A F + S G+ PDI++Y+ L+ FGKL + + S + + S G P+
Sbjct: 255 RGLGDEAEMVFRTMNES-GIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDIT 313
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
SY++L++A+ K A+ V +M AG
Sbjct: 314 SYNVLLEAYAELGSIKEAMDVFRQMQAAG 342
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC+ +G + F+ N S P IN L+R + E +
Sbjct: 248 LLGACAHRGLGDEAEMVFRTMNESGIVPD------INTYSYLVQTFGKLNRLEKVSELLR 301
Query: 98 S--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
S G PDI SYN L+ A+ +L EA VF + + G NA +YS+L++ +
Sbjct: 302 EMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLY 357
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 59 NLSRAEPPYKSVAAIN---CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+++R P+K+ ++N V A D R+ + F+ + P+ H Y +I
Sbjct: 86 SIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITL 145
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ + VF+ + S GV Y+ +++A+ N A+L +++ M +PS
Sbjct: 146 LGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPS 205
Query: 176 KETLKKVRRRCVR 188
T V C R
Sbjct: 206 ILTYNTVINACAR 218
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+++AY+ F + GL PD H+Y LI+ EAS++++ +V + ++PN + Y
Sbjct: 367 DIEKAYEMFHLM-KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIY 425
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS------------KETLKKVRRRCVREMDE 192
+ +++ + + AL ++EMV G P+ K+ +R ++EM E
Sbjct: 426 NTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTE 485
Query: 193 ESNDRVEALAKK 204
E+L K
Sbjct: 486 AGLKPPESLCSK 497
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LE + RA + N ++ G N LD+A E + GL P + +YN LI F
Sbjct: 270 LERMKRAHIN-PTTRTFNMLMDGLCNTGQLDKALSYLEKL-KLIGLCPTLVTYNILISGF 327
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
K+ + S + + G+ P+ ++Y++L++ + + D + A + M G P +
Sbjct: 328 SKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQ 387
Query: 177 ET 178
T
Sbjct: 388 HT 389
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKG-FETLDSVYFQLEN 59
G++ + F L + ET SP +Y +++ AC R G + ++ ++++
Sbjct: 121 GNVSKGFELLAQMETMG----------VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDD 170
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L A Y IN D YQ + VG + P++++YN+LI + +
Sbjct: 171 LGLAANQYIYTIMING-FFKKGYKKDGFELYQKMKLVG----VLPNLYTYNSLITEYCRD 225
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
K A +VF+ + GV NA++Y++L+ A +++ M A P+ T
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRT 284
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ +A+ +S G+ PD+++Y+ LI K K + + +
Sbjct: 174 SVVSFNTLMNGYIKLGDLNEXFRLKKAMQAS-GVQPDVYTYSVLINGLCKESKMDDXNEL 232
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 233 FDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCK 292
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 293 KGDLKQAQDLIDEMSMK 309
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + + GV+P+ +YS+L+
Sbjct: 159 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLI 217
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + DEM++ G P+ T
Sbjct: 218 NGLCKESKMDDXNELFDEMLDXGLVPNGVT 247
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 261 VDLAMEIYKQMLSQ-SLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 319
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D + A M+
Sbjct: 320 TLIDGSCKEGDLETAFEYRXRMIK 343
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 352 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 411
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 412 QRDGYVPS 419
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ ++ G ++ A + V + FG++P+I YNALI + K + EA +
Sbjct: 331 SEAAVSSLVEGLRKRGKVEEALNLVKRV-AEFGVSPNIFVYNALIDSLCKGRNFDEAELL 389
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + +G+ PN ++YS+L+D ALS + EM++ G PS
Sbjct: 390 FDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPS 436
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 21/224 (9%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
+F+ A+G + + E P Y V+ + GF + E L P SV
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN------EAEILCSKMRPGNSV 749
Query: 71 AAINCVILGC------ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
N V GC + D+ +A + A+ GL + +YN LI F + + E
Sbjct: 750 P--NQVTYGCFLDILTKGVGDMKKAVELHNAILK--GLLANTATYNMLIRGFCRQGRMEE 805
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
AS + ++ GV P+ ++Y+ ++ D K A+ + + M G P + +
Sbjct: 806 ASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865
Query: 185 RCV--REMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226
C EM + + R E L + ++ NTE + + N S S
Sbjct: 866 GCCVAGEMGKATELRNEMLRQ--GLKPNTETSETTISNDSSSKS 907
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 76 VILGCANIWDLDRAYQT---FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
VI + DL RA + EA G + P YN LI K +K +EA + + L
Sbjct: 233 VIRSLCELKDLSRAKEMIVQMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDL 288
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+KP+ ++Y LV ++ + L +IDEM+ F+PS+
Sbjct: 289 AGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSE 332
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ D A F+ +G GL P+ +Y+ LI F + K A ++ +G+KP+ Y
Sbjct: 382 NFDEAELLFDRMGK-IGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPY 440
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L++ H D AA S++ EM+N P+ T
Sbjct: 441 NSLINGHCKFGDISAAESLMAEMINKKLEPTVVT 474
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I+++ L+ + +A ++F + VKPN ++Y+++++ + + A
Sbjct: 502 GIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKA 561
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
++EM+ G P + + + C+ E+ V+ L K
Sbjct: 562 FEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK 605
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y L++ F + K EA V + + GV + + Y +L+D L ++D+K L ++ EM
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMH 674
Query: 169 NAGFAP 174
+ G P
Sbjct: 675 DRGLKP 680
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 44 RKGFETLDSV-YFQL------ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
RK E L + YF+L ENL P S+ N ++ ++ A F+A+
Sbjct: 105 RKVLEHLMKLKYFKLVWGFYEENLECGYPA--SLYFFNILMHSFVKEGEIRLAQSVFDAI 162
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L++
Sbjct: 163 -TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A + DEM++ G P+ T
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVT 243
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + ++ G+KP+ +Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 44 RKGFETLDSV-YFQL------ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
RK E L + YF+L ENL P S+ N ++ ++ A F+A+
Sbjct: 105 RKVLEHLMKLKYFKLVWGFYEENLECGYPA--SLYFFNILMHSFVKEGEIRLAQSVFDAI 162
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L++
Sbjct: 163 -TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A + DEM++ G P+ T
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVT 243
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + ++ G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +H+Y+ +I K + + EA R+F + G P++ SY++++ L RD A
Sbjct: 130 GIRPTVHTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVIIQGFLQIRDSSTA 189
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ +IDEMV GF+ T + + +D ES+D +
Sbjct: 190 VRLIDEMVGKGFSADSTTFQML-------LDLESDDEI 220
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G +D A ++ A S LTPD +Y+ L+ ++ + EA +F
Sbjct: 10 VHSYNILINGYCQSRMMDEA-KSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLF 68
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + S G+ PN ++YS+L+D + AL ++ M P
Sbjct: 69 KEMCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEP 113
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +HSYN LI + + + EA + + + P+ ++YS L+ + A
Sbjct: 5 GCGPVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEA 64
Query: 161 LSVIDEMVNAGFAPS 175
L++ EM + G P+
Sbjct: 65 LNLFKEMCSTGLLPN 79
>gi|15232594|ref|NP_190245.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206903|sp|Q9SNB7.1|PP264_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46610
gi|6523064|emb|CAB62331.1| hypothetical protein [Arabidopsis thaliana]
gi|332644660|gb|AEE78181.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F+A+ + G P + SY AL+ A K K EA RV+ H++
Sbjct: 462 NAVLVACSKASETTAAIQIFKAMVDN-GEKPTVISYGALLSALEKGKLYDEAFRVWNHMI 520
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAAL--SVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+G++PN +Y+ + A + QK L +++ EM + G PS T V C R
Sbjct: 521 KVGIEPNLYAYTTM--ASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCAR--- 575
Query: 192 EESNDRVEALAKKFDIRMNTEN 213
+ + +A ++ RM +EN
Sbjct: 576 ----NGLSGVAYEWFHRMKSEN 593
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F+ +V G KP +SY L+ A + A
Sbjct: 453 GLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEA 512
Query: 161 LSVIDEMVNAGFAPS 175
V + M+ G P+
Sbjct: 513 FRVWNHMIKVGIEPN 527
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G +PN +SY L L+ A + +
Sbjct: 385 NHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVR 444
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P + V C +
Sbjct: 445 LLNKMEDKGLKPQRRHWNAVLVACSK 470
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ YN+L+ G ++ EA ++ + + G+ PN ++Y+ L+ ++ + AL
Sbjct: 183 IGPNLFIYNSLL---GAMRGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEGEFLKAL 239
Query: 162 SVIDEMVNAGFAPSKET 178
++D GF P+ T
Sbjct: 240 GILDLTKEKGFEPNPIT 256
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 44 RKGFETLDSV-YFQL------ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
RK E L + YF+L ENL P S+ N ++ ++ A F+A+
Sbjct: 105 RKVLEHLMKLKYFKLVWGFYEENLECGYPA--SLYFFNILMHSFVKEGEIRLAQSVFDAI 162
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L++
Sbjct: 163 -TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A + DEM++ G P+ T
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVT 243
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + ++ G+KP+ +Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYKPS 415
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 44 RKGFETLDSV-YFQL------ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
RK E L + YF+L ENL P S+ N ++ G ++ A F+A+
Sbjct: 105 RKVLEHLMKLKYFKLVWGFYEENLECGYPA--SLYFFNILMHGFVKEGEIRLAQSVFDAI 162
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L++
Sbjct: 163 -TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A + DEM++ G P+ T
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVT 243
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + ++ G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYKPS 415
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D V+ LE + R N +I G N D + AY E + G PD+ SYN
Sbjct: 271 DEVFVVLEEM-RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVK-GCKPDVISYN 328
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+I K K EA+ +FE + G P+ SY +L D A ++DEMV
Sbjct: 329 VIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFK 388
Query: 171 GFAPSKETLKK 181
G+AP + K
Sbjct: 389 GYAPKSASXTK 399
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D Y+ LI A K+ + E V E + G KP+ ++Y+ ++ +D +AA V+
Sbjct: 253 DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL 312
Query: 165 DEMVNAGFAP 174
+EMV G P
Sbjct: 313 EEMVVKGCKP 322
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + ++ AY+ F+ + + PD +Y A+I + K EA +VF + S
Sbjct: 86 LIDGFCKLGNIQAAYKLFDEMEKQR-IVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSR 144
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+P+ ++Y+ L+D + + + + A S+ ++MV +G P+
Sbjct: 145 GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++YN++I K K +A RV +++ G+ P+ + Y+ L+D + +AA
Sbjct: 40 GLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAA 99
Query: 161 LSVIDEMVNAGFAP 174
+ DEM P
Sbjct: 100 YKLFDEMEKQRIVP 113
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKG-FETLDSVYFQLEN 59
+G++Q A+ +E E + I F + ++ R G D V+ ++
Sbjct: 93 LGNIQAAYKLFDEMEK---------QRIVPDFIAYTAVICGLCRCGKMMEADKVFNKM-- 141
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
SR P + +I G ++++A+ + S GLTP++ +Y AL KL
Sbjct: 142 FSRGVEPDE--VTYTTLIDGYCKSGEMEKAFSLHNQMVQS-GLTPNVVTYTALADGLCKL 198
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A+ + + G++ N +Y+ LV+ + + + A+ +++EM AG P T
Sbjct: 199 GQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTIT 257
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL +I +YN+L+ K +A ++ E + G+ P+ ++++ L+DA+ + A
Sbjct: 215 GLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKA 274
Query: 161 LSVIDEMVNAGFAPS 175
++ EM++ G P+
Sbjct: 275 HELLREMLDRGLQPT 289
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 36/161 (22%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 162 SVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVEPDVYTYSVLINGLCKESKIDGANEL 220
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTN---------------------------------- 154
F+ ++ G+ PN ++++ L+D H N
Sbjct: 221 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCK 280
Query: 155 -RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
D K A ++IDEM G P K T + C +E D E+
Sbjct: 281 KGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLET 321
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + +L E R+ + + GV+P+ +YS+L+
Sbjct: 147 ARSVFDAI-TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLI 205
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 206 NGLCKESKIDGANELFDEMLDKGLVPNGVT 235
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DL+ A++ + + D+ Y LI + ++ +A ++ ++S+
Sbjct: 309 LIDGCCKEGDLETAFEHRKRMIQENIRLDDV-VYTTLISGLCQEGRSVDAEKMLREMLSV 367
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ EM G PS
Sbjct: 368 GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 407
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV ++N ++ D + F+ SFG+TP+I + N L+ A K A +
Sbjct: 153 RSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYK 212
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V + + S+G+ PN ++Y+ ++ ++ D ++A V++EM++ G+ P T
Sbjct: 213 VLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATT 263
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI + + EA R+++ + KPNA +Y++L++ N + K
Sbjct: 395 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V++EM+ G P+K T
Sbjct: 455 VRVLEEMLEIGCFPNKTT 472
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ AY+ + + S GL P++ +Y ++ + A RV E ++ G P+A +Y
Sbjct: 206 DIESAYKVLDEI-PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTY 264
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++L+D + A +V+D+M P++ T + R +E
Sbjct: 265 TVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKE 309
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + E + G PD +Y L+ + KL + EA+ V + + ++PN ++Y
Sbjct: 241 DMESAKRVLEEMLDR-GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTY 299
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+++ A + A ++ DEM+ F P KV
Sbjct: 300 GVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKV 337
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 74 NCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I G C + DLD A+ + + G PD SYN L+ K+ + +AS + E +
Sbjct: 302 NSMIAGFCEDEGDLDAAFAALDDMQKG-GCKPDSVSYNTLVGGLCKMGRWRDASELVEDM 360
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
G +P+ ++Y L D A V +EMV GFAPSK+ ++K RE D
Sbjct: 361 PRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVAWIEREGDA 420
Query: 193 ESNDRV 198
S + V
Sbjct: 421 ASLESV 426
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ ++ G ++ A + V FG++P++ YNALI + K +K EA +
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRV-VDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + +G++PN ++YS+L+D ALS + EMV+ G S
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS 436
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
+F+ A+G + + E P Y V+ + GF + E L P SV
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN------EAEVLCSKMQPVSSV 749
Query: 71 AAINCVILGC------ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
N V GC D+ +A + A+ GL + +YN LI F + + E
Sbjct: 750 P--NQVTYGCFLDILTKGEVDMQKAVELHNAILK--GLLANTATYNMLIRGFCRQGRIEE 805
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
AS + ++ GV P+ ++Y+ +++ D K A+ + + M G P + +
Sbjct: 806 ASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865
Query: 185 RCV--REMDEESNDRVEAL 201
C EM + + R E L
Sbjct: 866 GCCVAGEMGKATELRNEML 884
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 76 VILGCANIWDLDRAYQT---FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
VI + DL RA + EA G + P YN LI K +K +EA + + L
Sbjct: 233 VIRSLCELKDLSRAKEMIAHMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDL 288
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+KP+ ++Y LV ++ + L ++DEM+ F+PS+
Sbjct: 289 AGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSE 332
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I+++ L+ + +A ++F + VKPN ++Y+++++ + D A
Sbjct: 502 GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKA 561
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
+ EM G P + + + C+ E+ V+ L K
Sbjct: 562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK 605
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y L++ F + K EA V + +V GV + + Y +L+D L ++D+K ++ EM
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 169 NAGFAP 174
+ G P
Sbjct: 675 DRGLKP 680
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 56 QLENLSRAEPPYKSVAAINC---VILGCANIWDLDRAYQTFEAVG-----SSFGLTPDIH 107
+L++LSRA+ + A C ++ I L + + +EAVG + L PD+
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y L+Y K+++ + + ++ L P+ + S LV+ + AL+++ +
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 168 VNAGFAPS 175
V+ G +P+
Sbjct: 359 VDFGVSPN 366
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ SRKG + D ++ N++ + V N +I D++RAY+ +
Sbjct: 330 LIYVFSRKGQVQETDRLF----NVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ PD +YN L+ F L + EA + + + G++P+ +SY+ L+ + D
Sbjct: 386 EKKR-IPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444
Query: 157 QKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEESNDRVEALAK 203
K AL V DEM++ GF P+ T ++ C +R+ D+ N E +AK
Sbjct: 445 IKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAK 493
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +A + FE + S G+ +Y +LIY F + + E R+F V
Sbjct: 293 NILINGYCKEGNEKKALEVFEEM-SQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAV 351
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVREMDE 192
G++P+ + Y+ L+++H T D + A ++ EM P T + R C+ +
Sbjct: 352 KKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLD 411
Query: 193 ESNDRVEALAKK 204
E+ ++ + K+
Sbjct: 412 EARTLIDEMTKR 423
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D+V E L++ E S N +I G ++ LD A Q E + G+ + +YN
Sbjct: 201 DAVKVFDEMLTKGEVA-PSAVMYNALIGGYCDVGKLDVALQYREDMVQR-GIAMTVATYN 258
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
L++A + +A V E + G P+ +Y++L++ + ++K AL V +EM
Sbjct: 259 LLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQK 318
Query: 171 GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
G + T + R+ + DR+ +A K IR
Sbjct: 319 GVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIR 356
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + LD A + + + G+ PD+ SYN LI + +A RV + ++
Sbjct: 398 NTLMRGFCLLGRLDEARTLIDEM-TKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMM 456
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P M+Y+ L+ R A +++ EMV G P T
Sbjct: 457 DKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDST 501
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N VI G + A + + G+ PD ++Y LI + K+ + +A
Sbjct: 143 PRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDA 202
Query: 126 SRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+VF+ +++ G V P+A+ Y+ L+ + AL ++MV G A
Sbjct: 203 VKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIA 251
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I ++ A + F+ + + + P YNALI + + K A + E +V
Sbjct: 189 LISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQR 248
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ +Y+LL+ A + A +V++EM GF+P
Sbjct: 249 GIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSP 287
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G P + +YNALI K+++ +A + + +V+ G+ P+ +Y L++ LT D++
Sbjct: 459 GFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEG-LTTEDER 515
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I D+++A + + GL P I YNALI F + A VF+ +++
Sbjct: 669 LISGLCKIADMEKAVGLLDEMAKE-GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAK 727
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D + N D A + EM++ G AP
Sbjct: 728 GLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAP 766
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+ E P +Y PL++ S++G +L LE +++A + + N +I G + +
Sbjct: 480 ISEGLKPNAFMYAPLIIGHSKEGNISL--ACEALEKMTKANV-HPDLFCYNSLIKGLSTV 536
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++ A + + V GL PD +Y+ LI+ + K +A ++ +++ G+KPNA +
Sbjct: 537 GRMEEAEEYYAQV-QKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT 595
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
Y+ L++ + + D + S++ M+ +G P V R R + E
Sbjct: 596 YTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENME 645
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+ V+ E + R + V N +I G ++ A+ F+ +G
Sbjct: 254 CKARDFDAAKKVF---EEMRRRDCAMNEVT-YNVMISGLCRSGAVEEAF-GFKEEMVDYG 308
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD +Y AL+ K + EA + + + G+KPN + Y LVD + A
Sbjct: 309 LSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAF 368
Query: 162 SVIDEMVNAGFAPSK 176
++ EM++AG P+K
Sbjct: 369 DILKEMISAGVQPNK 383
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P+ Y+ LI K+ + AS++ + ++ +G++P+ +Y+ L+ H D+
Sbjct: 376 SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKD 435
Query: 159 AALSVIDEMVNAGFAPS 175
A +++EM N+G P+
Sbjct: 436 GAFELLNEMRNSGILPN 452
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A++ + +S G+ P+++SY +I + ++ EA + E ++S G+KPNA Y
Sbjct: 433 DKDGAFELLNEMRNS-GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 491
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+ H + A +++M A P
Sbjct: 492 APLIIGHSKEGNISLACEALEKMTKANVHP 521
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I L RA + + + GL PD +YN L+ + A + + +
Sbjct: 389 LIRGLCKIGQLGRASKLLKEM-IKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNS 447
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN SY ++++ N + K A ++++EM++ G P+
Sbjct: 448 GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPN 487
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P+I Y L+ F K KT EA + + ++S GV+PN + Y L+
Sbjct: 340 SCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQL 399
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
A ++ EM+ G P T + + ++ D++
Sbjct: 400 GRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDG 436
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G D+ RA F+++ + GL P+ +Y ALI K +A +
Sbjct: 697 GIVCYNALIDGFCRSGDISRARNVFDSILAK-GLVPNCVTYTALIDGNCKNGDITDAFDL 755
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
++ ++ G+ P+A Y++L D + AL + +EM N G+A
Sbjct: 756 YKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA 800
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+H Y++LI K+ +A + + + G++P + Y+ L+D + D A
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 717
Query: 161 LSVIDEMVNAGFAPS 175
+V D ++ G P+
Sbjct: 718 RNVFDSILAKGLVPN 732
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+++Y+ I A K + A +VFE + N ++Y++++ + + A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297
Query: 161 LSVIDEMVNAGFAP 174
+EMV+ G +P
Sbjct: 298 FGFKEEMVDYGLSP 311
>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
Length = 395
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 74 NCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I G C + DLD A+ + + G PD SYN L+ K+ + +AS + E +
Sbjct: 230 NSMIAGFCEDEGDLDAAFAALDDMQKG-GCKPDSVSYNTLVGGLCKMGRWRDASELVEDM 288
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
G +P+ ++Y L D A V +EMV GFAPSK+ ++K RE D
Sbjct: 289 PRRGCRPDVVTYRRLFDGICDAGGFSEARRVFNEMVFKGFAPSKDGVRKFVAWIEREGDA 348
Query: 193 ESNDRV 198
S + V
Sbjct: 349 ASLESV 354
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFKLKSAMHAS-GVXPDVYTYSVLINGLCKESKMDXANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++D ++ ++ K
Sbjct: 295 KGDLNQAHDLIDEMSMK 311
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E ++ + + GV P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDXANELFDEMLVKGLVPNGVTF 250
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMMREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ EM G APS
Sbjct: 382 GLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPS 421
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D A
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAF 337
Query: 162 SVIDEMVN 169
M+
Sbjct: 338 EHRKRMIQ 345
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + VI G D D+AY T+ + G+ PD+
Sbjct: 176 EALELLHMMADDRGGGSPP--DVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPDVV 232
Query: 108 SYNALIYAFGKLK------------KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+Y+++I A K + + E+ ++F+ +V +GVKP+ ++YS L+D +
Sbjct: 233 TYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 292
Query: 156 DQKAALSVIDEMVNAGFAPSKET 178
A+ ++ MV+ G P+ T
Sbjct: 293 KMDEAMKLLSGMVSVGLKPNTVT 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +Y+ LI + K EA ++ +VS+G+KPN ++YS L++ + +
Sbjct: 272 IGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 331
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 332 ALVLFKEMESSGVSP 346
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ A R G T+++ + S+ PP + A + +I G NI ++ A + +
Sbjct: 637 LIRAYCRNG-NTVEAFKLHDDMRSKGIPP--TTATYSSLIHGMCNIGRMEDAKCLIDEMR 693
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
GL P++ Y ALI + KL + + V + + S + PN ++Y++++D + + D
Sbjct: 694 KE-GLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752
Query: 158 KAALSVIDEMVNAGFAPSKET 178
K A ++ EMV G P T
Sbjct: 753 KTAAKLLHEMVGKGIVPDTVT 773
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSV--YFQLENLS 61
L + + NE E +Y M + SP L+ + KG + D++ +F +E L
Sbjct: 218 LLSSLVKANELEKSYW-VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 276
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ +V N +I G +LD A++ E + G+ + +Y+ LI KL+K
Sbjct: 277 VSP----NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEK 331
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
EA+ V + + G PN + Y+ L+D + + AL + +MV+ G P+ TL
Sbjct: 332 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391
Query: 182 VRRR-C-VREMDEESNDRVEALAKKFDI 207
+ + C + +M++ E L++ F I
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSI 419
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI A+ + T EA ++ + + S G+ P +YS L+ + A +IDEM
Sbjct: 634 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 693
Query: 169 NAGFAPS 175
G P+
Sbjct: 694 KEGLLPN 700
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC ++ ++ G+ PD +YN LI+ ++ K EA ++
Sbjct: 530 NTLISGCCKEGKVEEGFK-LRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 588
Query: 134 SLGVKPNAMSYSLLVDAH 151
S + PN +Y +++D +
Sbjct: 589 SRDLVPNVYTYGVMIDGY 606
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R E + N ++ CA D A F + G+ PDI +Y+ L+ FGKL +
Sbjct: 2 RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEG-GILPDITTYSYLVETFGKLNR 60
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ S + + + S G P+ SY++L++AH + K A+ V +M AG P+ T
Sbjct: 61 LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAAT 117
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E I + + L+ AC+R+G + F+ N P + + ++ +
Sbjct: 4 EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILP---DITTYSYLVETFGKLNR 60
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L++ + + + S G PDI SYN L+ A + EA VF + G PNA +YS
Sbjct: 61 LEKVSELLKEMESG-GSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYS 119
Query: 146 LLVD 149
+L++
Sbjct: 120 ILLN 123
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G N +D A+ F ++ S G+ PD+ +YN +I K EA +
Sbjct: 488 GIGIYNIIIHGMCNASKVDDAWSLFCSL-SVKGVKPDVLTYNVMIGGLCKKGSLSEADML 546
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G P+ +Y++L+ AHL +++ +I+EM GFA T+K V
Sbjct: 547 FRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMV 600
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 70 VAAINCVILGCAN--IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
V A + +I G N WD D A E +G + + P++ +++ALI F K K EA
Sbjct: 279 VVAYSSIIGGLCNDGRWD-DGAKMLREMIGRN--IIPNVVTFSALIDVFVKEGKLLEAKE 335
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ +V+ G+ P+ ++YS L+D A ++D MV+ G P+ T
Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVT 386
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS GL D +YN L+ F + K A +F+ +VS GV P+ ++Y +L+D N +
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470
Query: 158 KAALSVIDEM 167
+ AL + ++M
Sbjct: 471 QKALEIFEKM 480
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y++LI F K + EA+++ + +VS G +PN ++YS+L++++ +
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNG 403
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + E+ + G T
Sbjct: 404 MRLFCEISSKGLVADTVT 421
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G P+I +Y+ LI ++ K K+ R+F + S G+ + ++Y+ LV +
Sbjct: 377 SKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLN 436
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + EMV+ G PS T
Sbjct: 437 VAKELFQEMVSRGVPPSVVT 456
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++++ N +I F + +K A V + G +PN +++S L++ A
Sbjct: 99 GIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEA 158
Query: 161 LSVIDEMVNAGFAPSKETL 179
++++D MV + P+ T+
Sbjct: 159 VALVDRMVEMKYRPNVVTV 177
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+LD A F + G+ D+ +Y+++I + + +++ ++ + PN +++
Sbjct: 259 NLDDALSLFNEMEMK-GIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTF 317
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S L+D + A + +EMV G AP T
Sbjct: 318 SALIDVFVKEGKLLEAKELYNEMVARGIAPDTIT 351
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N +I G +++ A + + + + G PD +YN L+ F K K A
Sbjct: 481 PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESA 539
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S F+ +V G+ PN +SY+ L+D H + ALS+++ M G P+ E+ V
Sbjct: 540 SFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI K K EA + + + P+ +Y+ L+ H NR+ A
Sbjct: 235 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 294
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V D MV G P+ T + C +E+ D +E + +K
Sbjct: 295 FGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 339
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ L+PD+ +Y +LI + + A VF+ +V G PN+++YS L++
Sbjct: 268 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 327
Query: 159 AALSVIDEMVNAGFAPS 175
AL +++EM+ G P+
Sbjct: 328 EALDMLEEMIEKGIEPT 344
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P++ SYNA+I K + EA ++ + + G+ PN ++Y+ L+D N +
Sbjct: 584 MGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQF 643
Query: 160 ALSVIDEM 167
A + +M
Sbjct: 644 AFKIFHDM 651
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++Y++LIY + K EA + + + G+ P+ ++++ L+D + A +
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 717
Query: 164 IDEMVNAGFAPSKET----LKKVRRRCV 187
+ MV+ G P+ T LK +++ C+
Sbjct: 718 LRRMVDVGCKPNYRTYSVLLKGLQKECL 745
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ALI + K K EA F+ ++ G +P+ ++YS+++D HL + K A
Sbjct: 498 GVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRA 557
Query: 161 LSVIDEMVNAGFAPSKETLKKVRR------------RCVREMDE 192
++ EM++ G P + + R R VR+M+E
Sbjct: 558 MTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEE 601
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I C+ +L+ A F+ + + PD+ +YNA+I +G+ + +A ++F
Sbjct: 328 IITYNTLISACSRASNLEEAVNVFDDM-VAHHCEPDLWTYNAMISVYGRCGLSGKAEQLF 386
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L S G P+A+SY+ + A + + + +EMV GF + T
Sbjct: 387 NDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMT 435
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A Q + + SS G PD+ +Y LI + GK K EA+ + +++ GVKP +YS
Sbjct: 450 DLALQLYRDMKSS-GRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSA 508
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
L+ + A D M+ +G P +
Sbjct: 509 LICGYAKAGKPVEAEETFDCMLRSGTRPDQ 538
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQK 158
G D +YN +I+ +GK + A +++ + S G P+ ++Y++L+D+ TN+ ++
Sbjct: 427 IGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEE 486
Query: 159 AALSVIDEMVNAGFAPSKET 178
AA ++ EM+N G P+ T
Sbjct: 487 AA-GMMSEMLNTGVKPTLRT 505
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GL P + +Y +L+ +FGK + +A +FE L S G K + Y +++ + +
Sbjct: 1018 TVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHS 1077
Query: 159 AALSVIDEMVNAGFAPSKETL 179
A + M + G P+ T+
Sbjct: 1078 KAQRLFSMMKDEGVEPTIATM 1098
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A Q F + S G PD SYN+ +YAF + + + E +V +G + M+Y+ +
Sbjct: 381 KAEQLFNDL-ESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTM 439
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + AL + +M ++G P
Sbjct: 440 IHMYGKQGQNDLALQLYRDMKSSGRNP 466
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI +YN LI A + EA VF+ +V+ +P+ +Y+ ++ + A
Sbjct: 323 GLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKA 382
Query: 161 LSVIDEMVNAGFAP 174
+ +++ + GF P
Sbjct: 383 EQLFNDLESRGFFP 396
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V N ++ G ++ A Q E + SS G PD +Y +L+YA + +T +
Sbjct: 358 PP--NVVTYNALVHGLCKSGRIEEACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDD 414
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A ++ L S G P+ ++Y++LVD + + A++V++EMV G P
Sbjct: 415 ALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 464
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +D A F+ + + G P++ +YNAL+ K K A + E +V
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 245
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV P+ ++YS+LVDA AL ++ M + G P+ KV
Sbjct: 246 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 41 ACSRKGFETLDSVYFQL--ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS 98
AC FE +++ ++ +NL +P + A+ I G ++ A + +G+
Sbjct: 301 ACKAGNFEQASALFEEMVAKNL---QPDVMTFGAL---IDGLCKAGQVEAARDILDLMGN 354
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ P++ +YNAL++ K + EA + E +VS G P++++Y LV A
Sbjct: 355 -LGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 413
Query: 159 AALSVIDEMVNAGFAPSKET 178
AL ++ E+ + G+ P T
Sbjct: 414 DALQLVSELKSFGWDPDTVT 433
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S ++PD +++ LI K + EA VF+ +++ G PN ++Y+ LV+
Sbjct: 173 GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 232
Query: 158 KAALSVIDEMVNAGFAP 174
+ A ++I+ MV+ G P
Sbjct: 233 ERAHAMIESMVDKGVTP 249
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD ++N LI K +AS +FE +V+ ++P+ M++ L+D +AA
Sbjct: 287 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAAR 346
Query: 162 SVIDEMVNAGFAPSKET 178
++D M N G P+ T
Sbjct: 347 DILDLMGNLGVPPNVVT 363
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
VA N V+ D RA + F + G+ P I +YN +I K +F
Sbjct: 1 VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKKV 182
E LV G P+ ++Y+ L+D+ D + A + +M + G P+ T L KV
Sbjct: 61 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120
Query: 183 -----RRRCVREMDEESND 196
R ++EM +S D
Sbjct: 121 GRIDEARELIQEMTRKSCD 139
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKL 119
SR P +V + +I G + +D A + E S + P+I +YN+ + K
Sbjct: 100 SRGCVP--NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ 157
Query: 120 KKTFEASRVFEHL--VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
T EA + L SL V P+ +++S L+D A SV D+M+ G+ P+
Sbjct: 158 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVI 217
Query: 178 TLKK-VRRRCVREMDEESNDRVEALAKK 204
T V C + E ++ +E++ K
Sbjct: 218 TYNALVNGLCKADKMERAHAMIESMVDK 245
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
++ L RA +T +A+ SFG PD +YN L+ K KT +A V E +V G
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH 462
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDR 197
+P++ +++ + + + ++ ++ G P T + R D
Sbjct: 463 QPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCR---SGKLDD 519
Query: 198 VEALAKKFD 206
V+A+ K+F+
Sbjct: 520 VKAMIKEFE 528
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++RA+ E++ G+TPD+ +Y+ L+ AF K + EA +
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVDK-GVTPDVITYSVLVDAFCKASRVDEALEL 273
Query: 129 FEHLVSLGVKPNAM-----SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ S G PN + ++++L+ + + A ++ +EMV P
Sbjct: 274 LHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQP 324
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 7/180 (3%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
FTS+ L C E ++ + N+ AE ++ + N ++ A + A Q
Sbjct: 330 FTSMIHLYSVCGH--IENCEAAF----NMMLAEGLKPNIVSYNALLGAYAARGMENEALQ 383
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
F + + G PD+ SY +L+ A+G+ +K +A +F+ + +KPN +SY+ L+DA+
Sbjct: 384 VFNEIKQN-GFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAY 442
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+N + A+ ++ EM P+ ++ + C R + D V + A+ I++NT
Sbjct: 443 GSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNT 502
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +T +A +F + KP+A +Y+ L++AH + A++++D+M+
Sbjct: 153 YNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDML 212
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T + C
Sbjct: 213 RAAIPPSRSTYNNLINAC 230
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YNALI A G+ + A + + ++ + P+ +Y+ L++A ++ + K AL+V
Sbjct: 183 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 242
Query: 164 IDEMVNAGFAP 174
+M + G P
Sbjct: 243 CKKMTDNGVGP 253
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P N +I + D+A F ++ PD+ ++ ++
Sbjct: 277 YFELIKGTHIRP---DTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSM 333
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + F +++ G+KPN +SY+ L+ A+ + AL V +E+ GF
Sbjct: 334 IHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGF 393
Query: 173 AP 174
P
Sbjct: 394 RP 395
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R PP + +I G ++++A Q F+ + S L PDI +YN LI +
Sbjct: 398 RGVPP--DLCTFTTLIHGYCRDGNIEKALQFFDTI-SDQRLRPDIVTYNTLIDGMCRQGD 454
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A+ +++ + S + PN ++YS+L+D+H A + +DEMVN G P+ T
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514
Query: 182 V 182
+
Sbjct: 515 I 515
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD +YN +I F EA V++ + + G++P+ +Y +++ H+ + K +
Sbjct: 575 VQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSF 634
Query: 162 SVIDEMVNAGFAP 174
+ DEM+ G AP
Sbjct: 635 QLHDEMLQKGLAP 647
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+ G D+A + F A+ + G+ PD+ S+N LI F + + EA R ++ +
Sbjct: 233 NSVLKGLLRNGRWDKAREVFRAM-DACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR 291
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V P+ +S+S L+ + A + EM G P
Sbjct: 292 GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMP 332
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ R G E +++ F E R P V + +C+I ++D A + +
Sbjct: 270 LIGGFCRAG-ELEEALRFYKEMRGRRVTP--DVVSFSCLIGLFTRRGEMDHAAEYLREM- 325
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
FGL PD Y +I F + EA RV + +V+ G P+ ++Y+ L++ R
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385
Query: 158 KAALSVIDEMVNAGFAP 174
A +++EM G P
Sbjct: 386 SDAEELLNEMKERGVPP 402
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ ++ N +++++ K + E V + V P+ ++++++VDA D +AA+++I
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217
Query: 165 DEMVNAGFAPSKETLKKVRRRCVR 188
D MV+ G P T V + +R
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLR 241
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +YN LI+ + K K EA + + + + V+P+A++Y++++ + + + A
Sbjct: 540 VMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEAD 599
Query: 162 SVIDEMVNAGFAPSKET 178
V +M G P + T
Sbjct: 600 WVYKKMGARGIEPDRYT 616
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+FG PD+ +YN L+ K ++ +A + + GV P+ +++ L+ + + + +
Sbjct: 362 AFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIE 421
Query: 159 AALSVIDEMVNAGFAP 174
AL D + + P
Sbjct: 422 KALQFFDTISDQRLRP 437
>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 29 FSPFTSLYPLVVAC--SRKGFETLDSVYFQ--LENLSRAEPPYKSVAAINCVILGCANIW 84
+ PF Y ++ C K ++ ++ VY Q LE+ S + N V+ +
Sbjct: 259 YRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYS------PDILTYNIVMCTKYRLG 312
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
LD+ ++ E +G++ G +PD H++N L++ GK K A + H+ +G P+ + +
Sbjct: 313 KLDQFHRLLEELGTN-GFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHF 371
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+D + A DEM+ G P
Sbjct: 372 TTLIDGLSRAGNLDACKYFFDEMIKLGCMP 401
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK--AA 160
+PDI +YN ++ +L K + R+ E L + G P+ ++++L+ HL + K AA
Sbjct: 295 SPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILL--HLLGKGNKPLAA 352
Query: 161 LSVIDEMVNAGFAPS 175
L +++ M GF PS
Sbjct: 353 LDLLNHMKEVGFDPS 367
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 20 DSIIDMEEI-FSP----FTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAI 73
D + M+E+ F P FT+L + SR G LD+ YF E + P V
Sbjct: 354 DLLNHMKEVGFDPSVLHFTTL---IDGLSRAG--NLDACKYFFDEMIKLGCMP--DVVCY 406
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
+I G +L+ A FE + + G P++ +YN++I +K EA + + +
Sbjct: 407 TVMITGYIVAGELEMAQGLFEEM-TVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEME 465
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
S G PN + Y+ LV K A VI MV+ G + K RRC
Sbjct: 466 SRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 518
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD H+Y L+ F K K++ EA +FE + S G+ PN +Y+ L+D + + + A
Sbjct: 306 GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA 365
Query: 161 LSVIDEMVNAGF 172
L + DEM+ G
Sbjct: 366 LRIKDEMITRGL 377
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
+ F +LY S+ G + YF+ + LS P + I +I G ++ +
Sbjct: 559 YGAFINLY------SKSGEIQVAERYFK-DMLSSGIVPNNVIYTI--LIKGHCDVGNTVE 609
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A TF+ + GL PDI +Y+A+I++ K KT EA VF + GV P+ Y+ L+
Sbjct: 610 ALSTFKCMLEK-GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D + A + DEM++ G P+
Sbjct: 669 SGFCKEGDIEKASQLYDEMLHNGINPN 695
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I+G ++ A +G G+ P+ H+Y A I + K + A R F+ ++
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEK-GIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S G+ PN + Y++L+ H + ALS M+ G P
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIP 624
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
+E+ P Y ++ K +T +++ L+ L P V N +I G
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP--DVFLYNSLISGFCKEG 675
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+++A Q ++ + + G+ P+I YN LI KL + +A +F+ + + P+ ++Y
Sbjct: 676 DIEKASQLYDEMLHN-GINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTY 734
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S ++D + + + A + DEM++ G +P
Sbjct: 735 STIIDGYCKSGNLTEAFKLFDEMISKGISP 764
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
FE++ SS GL P+ +Y ALI F K EA R+ + +++ G+K N ++Y+ ++
Sbjct: 334 FESMPSS-GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
+ A+S+ +EM+ AG P T
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWT 418
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL ++ +YNA+I K + +A +F ++ G++P+ +Y+LL+D +L + D A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKA 435
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM PS T
Sbjct: 436 CELLAEMKARKLTPSPFT 453
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 73 INCVIL-GCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
I C+++ GC +L++A F EA S G + ++N+LI +F K K EA +F+
Sbjct: 768 IYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHGKVIEARELFD 824
Query: 131 HLVSLGVKPNAMSYSLLVDAH 151
+V + PN ++Y++L+DA+
Sbjct: 825 DMVDKKLTPNIVTYTILIDAY 845
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G A ++ +A F + + GL PD +YN LI + K +A +
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA-GLEPDTWTYNLLIDGYLKSHDMAKACEL 438
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + P+ +YS+L+ + D + A V+D+M+ G P+
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + ++ +A + F+ + L PD+ +Y+ +I + K EA ++
Sbjct: 695 NIVVYNTLINGLCKLGEVTKARELFDEIEEK-DLVPDVVTYSTIIDGYCKSGNLTEAFKL 753
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
F+ ++S G+ P+ Y +L+D + + ALS+ E
Sbjct: 754 FDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 791
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ YN LI + KK EA + + G+KPNA +Y ++ + + + + A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575
Query: 161 LSVIDEMVNAGFAPS 175
+M+++G P+
Sbjct: 576 ERYFKDMLSSGIVPN 590
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YNA I + EA V + ++ G+ P+ +Y+LLVD + K A +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199
+ M ++G P++ T + ++E + E R++
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK 369
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTP +Y+ LI +A+ V + ++ GVKPN Y L+ A++ + A+
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 162 SVIDEMVNAGFAP 174
++ M+ G P
Sbjct: 507 ELLKIMIANGVLP 519
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTP+I +Y LI A+GK + EA ++F + + + PN ++Y+ L+ ++ ++ +
Sbjct: 831 LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMI 890
Query: 162 SVIDEMVNAGFA 173
S+ +M G A
Sbjct: 891 SLFKDMEARGIA 902
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + ++D+AY+ F + ++PD+ +YN+LI K K+ ++ RV
Sbjct: 64 VCSYNTLIDGFSKEGEVDKAYELFYKMIEQ-SVSPDVVTYNSLIDGLCKTKEMVKSERVL 122
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E +V G++PN +Y+ L+ + T K ++ V EM ++G P
Sbjct: 123 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP 167
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYN LI F K + +A +F ++ V P+ ++Y+ L+D ++ +
Sbjct: 59 GLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKS 118
Query: 161 LSVIDEMVNAGFAPSKET 178
V+++MV+AG P+ +T
Sbjct: 119 ERVLEQMVDAGIRPNNKT 136
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
A +W + + F+ + SS GL P + + N+ I+A + + EA +F+ +V G KPN
Sbjct: 147 AGMWK--ESVRVFKEMSSS-GLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPN 203
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+SYS L+ + S+++ MV+ G P+
Sbjct: 204 IISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 238
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A FE + + G+ PD ++ +I + ++ + +A F H+V +GV P+ Y
Sbjct: 255 MDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYR 313
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + + A +I EM+N P
Sbjct: 314 CLIQGCCNHGELVKAKELISEMMNKDIPP 342
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G ++ ++ + E + + G+ P+ +YN+LIY + E+ RVF
Sbjct: 99 VVTYNSLIDGLCKTKEMVKSERVLEQMVDA-GIRPNNKTYNSLIYGYSTAGMWKESVRVF 157
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + S G+ P ++ + + A + K A + D MV G P+
Sbjct: 158 KEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPN 203
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 41/191 (21%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 306 PP--SEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAE 363
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHL--------------------------TNRDQK 158
+ + +V G +PN ++++ L++ + R
Sbjct: 364 GKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTT 423
Query: 159 AALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESN---DRVEALAKKFDIRMNTENR 214
AA + EM+ +G S +T V C +E+N +++ A+ KFDI
Sbjct: 424 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDI------- 476
Query: 215 KNILFNLEYSA 225
I FN+ SA
Sbjct: 477 --ITFNIVISA 485
>gi|297738433|emb|CBI27634.3| unnamed protein product [Vitis vinifera]
Length = 355
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +A N +I G + D A + + G DI YN LI A GK + E
Sbjct: 215 PP--DIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYL-DIVMYNTLINALGKAGRIDE 271
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A+++FE + S G+ P+ ++++ L++ H KAA + M++AG +P+ T
Sbjct: 272 ATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVT 325
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSR 62
+ AF+ F A+G E++ P + Y +++ + G L S ++
Sbjct: 189 MMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVL---DMLM 245
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
+ Y + N +I +D A + FE + SS G+ PD+ ++N LI K +
Sbjct: 246 KQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSS-GINPDVVTFNTLIEIHAKAGQL 304
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLL 147
A + + ++ G PN ++ + L
Sbjct: 305 KAAYKFLKLMLDAGCSPNHVTDTTL 329
>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 29 FSPFTSLYPLVVAC--SRKGFETLDSVYFQ--LENLSRAEPPYKSVAAINCVILGCANIW 84
+ PF Y ++ C K ++ ++ VY Q LE+ S + N V+ +
Sbjct: 255 YRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYS------PDILTYNIVMCTKYRLG 308
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
LD+ ++ E +G++ G +PD H++N L++ GK K A + H+ +G P+ + +
Sbjct: 309 KLDQFHRLLEELGTN-GFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHF 367
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+D + A DEM+ G P
Sbjct: 368 TTLIDGLSRAGNLDACKYFFDEMIKLGCMP 397
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK--AA 160
+PDI +YN ++ +L K + R+ E L + G P+ ++++L+ HL + K AA
Sbjct: 291 SPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILL--HLLGKGNKPLAA 348
Query: 161 LSVIDEMVNAGFAPS 175
L +++ M GF PS
Sbjct: 349 LDLLNHMKEVGFDPS 363
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 20 DSIIDMEEI-FSP----FTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAI 73
D + M+E+ F P FT+L + SR G LD+ YF E + P V
Sbjct: 350 DLLNHMKEVGFDPSVLHFTTL---IDGLSRAG--NLDACKYFFDEMIKLGCMP--DVVCY 402
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
+I G +L+ A FE + + G P++ +YN++I +K EA + + +
Sbjct: 403 TVMITGYIVAGELEMAQGLFEEM-TVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEME 461
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
S G PN + Y+ LV K A VI MV+ G + K RRC
Sbjct: 462 SRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC 514
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P SYN++I + A+ VF ++ G+KPN ++YS+L+D + N D + A
Sbjct: 483 GLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYA 542
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
V D MV+ PS T K+ C E+ D ++ +K
Sbjct: 543 FYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEK 587
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D + + ++ A K EA + F S GVK +A +YS+++ A N D + A
Sbjct: 239 GVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELA 298
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
++ +M + G+ PS+ T V CV++ + VEAL K
Sbjct: 299 CGLLKDMRDKGWVPSEGTFTSVIGACVKQ-----GNMVEALRLK 337
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 30 SPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
SP Y +++ C +Y Q++N + +V +N +I G + +
Sbjct: 381 SPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICP----TVFIVNSLIRGFLKVESRE 436
Query: 88 RAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
A + F EAV +I +YN+L+ K K EA+ +++ ++ G+ P +SY+
Sbjct: 437 EASKLFDEAVACDIA---NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNS 493
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ H + A SV +M++ G P+
Sbjct: 494 MILGHCRQGNLDMAASVFSDMLDCGLKPN 522
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL DI +Y ALI F K + AS +F L+ G+ PN++ Y+ L+ + + +AA
Sbjct: 658 GLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAA 717
Query: 161 LSVIDEMVNAGFAPSKET 178
L++ M+ G + +T
Sbjct: 718 LNLQKRMLGEGISCDLQT 735
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +YN+++ F K A + + GV PN ++Y+ L++ N + A
Sbjct: 588 GFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLA 647
Query: 161 LSVIDEMVNAGF 172
L + +EM N G
Sbjct: 648 LKMRNEMRNKGL 659
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L + P K + N +ILG +LD A F + GL P++ +Y+ L+ + K
Sbjct: 480 LDKGLAPTK--VSYNSMILGHCRQGNLDMAASVFSDMLDC-GLKPNVITYSILMDGYFKN 536
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
T A VF+ +V + P+ +Y++ ++ A ++ + V GF P T
Sbjct: 537 GDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTY 596
Query: 180 KKVRRRCVRE 189
+ ++E
Sbjct: 597 NSIMDGFIKE 606
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TP++ YNALI K EA R+ ++ G+ PN +Y +L++ + K
Sbjct: 799 ITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKI-----KGGN 853
Query: 162 SVIDEMVNAGFAPSK--------ETLKKVRRRCVRE 189
S + +++ F K +++KKV + V +
Sbjct: 854 SALKSLLSLKFKDGKGMKRINEQDSIKKVIEKAVNK 889
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+AA +I G D++ A F + GL+P+ YN+LI + L A +
Sbjct: 663 IAAYGALIDGFCKKQDIETASWLFSELLDG-GLSPNSVIYNSLISGYRNLNNMEAALNLQ 721
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++ G+ + +Y+ L+D L AL + EM G P
Sbjct: 722 KRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIP 766
>gi|357502513|ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496560|gb|AES77763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+A N +I G + D A + + G DI YN LI A GK + E ++ F
Sbjct: 655 IATYNMIIQGLGKMGRADLASAVLDGLLKQGGYL-DIVMYNTLINALGKAGRIDEVNKFF 713
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E + S G+ P+ ++Y+ L++ H K A + M++AG P+ T VRE
Sbjct: 714 EQMKSSGINPDVVTYNTLIEIHSKAGRLKDAYKFLKMMIDAGCTPNHVT-DTTLDYLVRE 772
Query: 190 MDEESNDRVEALAKKFD 206
+D+ + L+KK D
Sbjct: 773 IDKLRYQKASILSKKDD 789
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +YN+++ K+ K +A V++ L G +P+ +Y++LV AL +
Sbjct: 273 PDMCTYNSVLSVLCKVGKINDALIVWDELKGCGYEPDEFTYTILVRGCCRTYRMDVALRI 332
Query: 164 IDEMVNAGFAPS 175
+EM + GF P
Sbjct: 333 FNEMKDNGFRPG 344
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ GC + +D A + F + + G P + YN ++ K K E ++FE +
Sbjct: 316 LVRGCCRTYRMDVALRIFNEMKDN-GFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMAQE 374
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GVK + +Y++L+ + N +A + ++ G
Sbjct: 375 GVKASCSTYNILIHGLIKNGRSEAGYMLFCDLKKKG 410
>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +A N +I G + D A + + G DI YN LI A GK + E
Sbjct: 652 PP--DIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYL-DIVMYNTLINALGKAGRIDE 708
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A+++FE + S G+ P+ ++++ L++ H KAA + M++AG +P+ T
Sbjct: 709 ATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVT 762
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 79 GCANIW-DLDRAYQTFEAV------GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
GC W DL A F+ + SSFG PD+ +YN+LI + K +A V+E
Sbjct: 243 GC---WGDLGTALNLFKEMKDKSLNSSSFG--PDLCTYNSLIRVLCLVGKVKDALIVWEE 297
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L G +P+A +Y +L+ + A+ + +EM GF P
Sbjct: 298 LKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCP 340
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC+ + +D A + F + + G PD YN L+ K +K EA +VFE +V
Sbjct: 313 LIQGCSKSYRMDDAMRIFNEMQYN-GFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVED 371
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV+ + ++++++ N A ++ ++ G
Sbjct: 372 GVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKG 407
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSR 62
+ AF+ F A+G E++ P + Y +++ + G L S ++
Sbjct: 626 MMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVL---DMLM 682
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
+ Y + N +I +D A + FE + SS G+ PD+ ++N LI K +
Sbjct: 683 KQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSS-GINPDVVTFNTLIEIHAKAGQL 741
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLL 147
A + + ++ G PN ++ + L
Sbjct: 742 KAAYKFLKLMLDAGCSPNHVTDTTL 766
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ A R G T+++ + S+ PP + A + +I G NI ++ A + +
Sbjct: 704 LIRAYCRNG-NTVEAFKLHDDMRSKGIPP--TTATYSSLIHGMCNIGRMEDAKCLIDEMR 760
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
GL P++ Y ALI + KL + + V + + S + PN ++Y++++D + + D
Sbjct: 761 KE-GLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819
Query: 158 KAALSVIDEMVNAGFAPSKET 178
K A ++ EMV G P T
Sbjct: 820 KTAAKLLHEMVGKGIVPDTVT 840
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 10/208 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSV--YFQLENLS 61
L + + NE E +Y M + SP L+ + KG + D++ +F +E L
Sbjct: 285 LLSSLVKANELEKSYW-VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ +V N +I G +LD A++ E + G+ + +Y+ LI KL+K
Sbjct: 344 VS----PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEK 398
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
EA+ V + + G PN + Y+ L+D + + AL + +MV+ G P+ TL
Sbjct: 399 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458
Query: 182 VRRR-C-VREMDEESNDRVEALAKKFDI 207
+ + C + +M++ E L++ F I
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSI 486
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI A+ + T EA ++ + + S G+ P +YS L+ + A +IDEM
Sbjct: 701 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 760
Query: 169 NAGFAPS 175
G P+
Sbjct: 761 KEGLLPN 767
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC ++ ++ G+ PD +YN LI+ ++ K EA ++
Sbjct: 597 NTLISGCCKEGKVEEGFK-LRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 655
Query: 134 SLGVKPNAMSYSLLVDAH 151
S + PN +Y +++D +
Sbjct: 656 SRDLVPNVYTYGVMIDGY 673
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 44 RKGFETLD-------SVYFQLENLSRAEPPYK-----SVAAI----NCVILGCANIWDLD 87
RKG + LD + + N+ +AE K +A + N ++ G + D++
Sbjct: 350 RKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDIN 409
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+AY T E + + GL P+ +YN+L+ F ++K EA + + +V GV PN +Y+ L
Sbjct: 410 KAYTTIEKM-EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTL 468
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+D + + +++EM G P+
Sbjct: 469 IDGYGRSCLFDRCFQILEEMEKKGLKPN 496
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD+ +A+ T+ + E L P V + +L + +++N+
Sbjct: 405 VGDINKAYTTIEKMEAV----------------GLRPNHVT-----YNSLVKKFCEMKNM 443
Query: 61 SRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
AE K +V N +I G DR +Q E + GL P++ SY
Sbjct: 444 EEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKK-GLKPNVISYGC 502
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI K EA + +V GV PNA Y++L+D K A DEMV
Sbjct: 503 LINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVARE 562
Query: 172 FAPS 175
P+
Sbjct: 563 IVPT 566
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLE 58
+GDL+RA E T + SP +Y +V+ C K + + ++ ++
Sbjct: 195 LGDLKRAI----ELMTCMKRGGV------SPGVFVYNVVIGGLCKEKRMKDAEKLFDEM- 243
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
L R P + N +I G + L+ A+ E + + P I ++N+L+ +
Sbjct: 244 -LDRRVAPNR--ITYNTLIDGYCKVGQLEEAFNIRERMKVE-NVEPTIITFNSLLNGLCR 299
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ EA RV E + G P+ +Y+ L D HL + A++++ +E V G
Sbjct: 300 AQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKG 352
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+ + L+ C ++G ++ +Y ++ ++ A I+C + D+ +A
Sbjct: 637 LNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYV----EHGDVQKACS 692
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
A+ + G+ PD +YN LI K + + + + G+ P +Y +L+ H
Sbjct: 693 LHSAMEAQ-GIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGH 751
Query: 152 LTNRDQKAALSVIDEMVNAGFAPS 175
+D A EM GF PS
Sbjct: 752 CKLKDFDGAYVWYREMFENGFTPS 775
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I + DL RA + + G++P + YN +I K K+ +A ++F+ ++
Sbjct: 189 IQAAVKLGDLKRAIELMTCMKRG-GVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRR 247
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESN 195
V PN ++Y+ L+D + + A ++ + M P+ T + C +M EE+
Sbjct: 248 VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQ 307
Query: 196 DRVEAL 201
+E +
Sbjct: 308 RVLEEM 313
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 76 VILGCA--NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
+I GC + +++ YQ L PD YNALI+ + + +A + +
Sbjct: 643 LIAGCGKEGLVLVEKIYQEM----LQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAME 698
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G++P+ M+Y+ L+ H +++++M G P ET
Sbjct: 699 AQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTET 743
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +N ++ + ++ +A E + ++G++PN ++Y+ LV ++ + A
Sbjct: 387 GLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEA 446
Query: 161 LSVIDEMVNAGFAPSKET 178
I +MV G P+ ET
Sbjct: 447 EKCIKKMVEKGVLPNVET 464
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+L L + + SVA++N + + + Q F + S GL PD Y I A
Sbjct: 133 ELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVES-GLRPDQFMYGKAIQA 191
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KL A + + GV P Y++++ + K A + DEM++ AP+
Sbjct: 192 AVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPN 251
Query: 176 KET 178
+ T
Sbjct: 252 RIT 254
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD H+Y L+ F K K++ EA +FE + S G+ PN +Y+ L+D + + + A
Sbjct: 306 GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA 365
Query: 161 LSVIDEMVNAGF 172
L + DEM+ G
Sbjct: 366 LRIKDEMITRGL 377
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
+ F +LY S+ G + YF+ + LS P + I +I G ++ +
Sbjct: 559 YGAFINLY------SKSGEIQVAERYFK-DMLSSGIVPNNVIYTI--LIKGHCDVGNTVE 609
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A TF+ + GL PDI +Y+A+I++ K KT EA VF + GV P+ Y+ L+
Sbjct: 610 ALSTFKCMLEK-GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D + A + DEM++ G P+
Sbjct: 669 SGFCKEGDIEKASQLYDEMLHNGINPN 695
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I+G ++ A +G G+ P+ H+Y A I + K + A R F+ ++
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEK-GIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S G+ PN + Y++L+ H + ALS M+ G P
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIP 624
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 81 ANIWDLDRAYQTFEAVGSSF-----GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
A I L + +T EA+G G+ PD+ YN+LI F K +AS++++ ++
Sbjct: 631 AIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN 690
Query: 136 GVKPNAMSYSLLVD--AHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN + Y+ L++ + + + A + DEM++ G +P
Sbjct: 691 GINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
FE++ SS GL P+ +Y ALI F K EA R+ + +++ G+K N ++Y+ ++
Sbjct: 334 FESMPSS-GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
+ A+S+ +EM+ AG P T
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWT 418
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL ++ +YNA+I K + +A +F ++ G++P+ +Y+LL+D +L + D A
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKA 435
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM PS T
Sbjct: 436 CELLAEMKARKLTPSPFT 453
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 73 INCVIL-GCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
I C+++ GC +L++A F EA S G + ++N+LI +F K K EA +F+
Sbjct: 735 IYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHGKVIEARELFD 791
Query: 131 HLVSLGVKPNAMSYSLLVDAH 151
+V + PN ++Y++L+DA+
Sbjct: 792 DMVDKKLTPNIVTYTILIDAY 812
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
+E+ P Y ++ K +T +++ L+ L P V N +I G
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP--DVFLYNSLISGFCKEG 675
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALI--YAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D+++A Q ++ + + G+ P+I YN LI Y + K EA ++F+ ++S G+ P+
Sbjct: 676 DIEKASQLYDEMLHN-GINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGY 734
Query: 143 SYSLLVDAHLTNRDQKAALSVIDE 166
Y +L+D + + ALS+ E
Sbjct: 735 IYCILIDGCGKEGNLEKALSLFHE 758
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ YN LI + KK EA + + G+KPNA +Y ++ + + + + A
Sbjct: 516 GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVA 575
Query: 161 LSVIDEMVNAGFAPS 175
+M+++G P+
Sbjct: 576 ERYFKDMLSSGIVPN 590
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G A ++ +A F + + G+ PD +YN LI + K +A +
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA-GIEPDTWTYNLLIDGYLKSHDMAKACEL 438
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + P+ +YS+L+ + D + A V+D+M+ G P+
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YNA I + EA V + ++ G+ P+ +Y+LLVD + K A +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199
+ M ++G P++ T + ++E + E R++
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK 369
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTP +Y+ LI +A+ V + ++ GVKPN Y L+ A++ + A+
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 162 SVIDEMVNAGFAP 174
++ M+ G P
Sbjct: 507 ELLKIMIANGVLP 519
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTP+I +Y LI A+GK + EA ++F + + + PN ++Y+ L+ ++ ++ +
Sbjct: 798 LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMI 857
Query: 162 SVIDEMVNAGFA 173
S+ +M G A
Sbjct: 858 SLFKDMEARGIA 869
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAINCVILGCANI 83
++E P Y ++V C + D++ YF+ LS +P + N +I G
Sbjct: 955 VKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDP---DLVCYNLMINGLGRS 1011
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++ A F+ + + G+TPD+++YNALI G EA +++E L G++PN +
Sbjct: 1012 QRVEEALSLFDEMRNR-GITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFT 1070
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
Y+ L+ H + + A +V +M+ G P+ T ++
Sbjct: 1071 YNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +I + +D A+ T + + G+ P++H+YN LI +L + EA +F
Sbjct: 367 VVTFTILIDALCKVGKVDEAFGTLDVMKKQ-GVAPNLHTYNTLICGLLRLNRLDEALELF 425
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ SLG++ A +Y L +D + + + A+ ++M G P+
Sbjct: 426 NSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPN 471
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L+ A Q FE + +G P+ YN L+ FGK A +F +V
Sbjct: 899 LIDGLLKLGRLEEAKQFFEEM-LDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKE 957
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G++P+ SYS++VD AL +E+ +G P
Sbjct: 958 GIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDP 996
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
L PLV + G + +D+ Y L+++ S+ A N +I G + A+ F
Sbjct: 755 LIPLVKFLCKHG-KAVDA-YNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFY 812
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ ++ G TPD+ +YN + A GK K E ++E ++ G KPN +++++++ + +
Sbjct: 813 KMKNA-GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKS 871
Query: 155 RDQKAALSVIDEMVNAGFAPSKET 178
A+ + ++++ F+P+ T
Sbjct: 872 NSLDKAIDLYYDLMSGDFSPTPWT 895
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
+P Y +++ C K D++ E P V IN +I +D
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDP--EVVIINSLIDTLYKADRVDE 560
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ F+ + L P + +YN L+ GK + EA+ +F+ +++ PN +S++ L+
Sbjct: 561 AWKMFQRM-KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLL 619
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
D N + AL ++ M P T V ++E
Sbjct: 620 DCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKE 660
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 74 NCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N VI G LD+A + + + F TP +Y LI KL + EA + FE +
Sbjct: 862 NIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTP--WTYGPLIDGLLKLGRLEEAKQFFEEM 919
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G PN Y++L++ D + A + MV G P
Sbjct: 920 LDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRP 961
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +SY LI+ K EA +V+ +VS G+KP+ +YS L+ A RD +
Sbjct: 187 GFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETV 246
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN-DRVEALAKKFD 206
+ ++ EM + G P+ T C+R + D + K+ D
Sbjct: 247 MGLLQEMESLGLRPNIYTFTI----CIRILGRAGKIDEAYGILKRMD 289
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A +TFE + ++ G+ P+I + NA +Y+ + + EA F L G+ P+A++Y++L
Sbjct: 455 KAIKTFEKMKTN-GIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNIL 513
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + A+ ++ EM G P
Sbjct: 514 MRCYGKAGRVDDAIKLLSEMEENGCDP 540
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P + +Y+AL+ A GK + + + + SLG++PN ++++ + + R K
Sbjct: 220 SEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICI--RILGRAGK 277
Query: 159 A--ALSVIDEMVNAGFAP 174
A ++ M +AG P
Sbjct: 278 IDEAYGILKRMDDAGCGP 295
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
+V R+ ET+ + ++E+L Y I ILG A +D AY + +
Sbjct: 234 MVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIR--ILGRAG--KIDEAYGILKRMD 289
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G PD+ +Y LI A K A +F + + KP+ ++Y L+D + D
Sbjct: 290 DA-GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDL 348
Query: 158 KAALSVIDEMVNAGFAP 174
A EM G+ P
Sbjct: 349 DAIKEFWSEMEADGYLP 365
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 158 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 216
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 262
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 139 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 197
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 198 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 231
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y A+I + + +A ++ ++S+
Sbjct: 305 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDV-AYTAIISGLCQEGRPVDAEKMLREMLSV 363
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G PS T
Sbjct: 364 GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXT 406
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L PD+ +YN LIY K +A + + + G+KP+ +Y+
Sbjct: 245 VDLAMEIYKQMLSQ-SLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYT 303
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D AA M+
Sbjct: 304 TLIDGCCKEGDLDAAFEHRKRMIQ 327
>gi|194690470|gb|ACF79319.1| unknown [Zea mays]
Length = 671
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 161 GVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESA 220
Query: 161 LSVIDEMVNAG 171
V DEM G
Sbjct: 221 RKVFDEMAGEG 231
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V+ N +I G ++ A + F + G+TPD+ +YN L+ A+ + A +VF
Sbjct: 166 VSTYNTLIWGFGLCKKMETAVRVFGDM-KGHGVTPDVTTYNTLLNAWVRAGDLESARKVF 224
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G + N++SY++++ ++ + A+++ EM G S++T
Sbjct: 225 DEMAGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKT 273
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + PD + ALI A+G+ EA ++F + ++GV A+SY+ ++ A L +
Sbjct: 89 SFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMMPNIGVPRTALSYNAVLKAILCRGREA 148
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ G AP T
Sbjct: 149 MARRIYNAMIADGVAPDVST 168
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 100 FGLTPDIH------SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
F + P+I SYNA++ A + A R++ +++ GV P+ +Y+ L+
Sbjct: 119 FRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGL 178
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ + A+ V +M G P T + VR D ES +V
Sbjct: 179 CKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKV 223
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E SP Y V+ +C+R G +E L ++ ++ R E + N ++ C+N
Sbjct: 206 KERVSPSILTYNTVINSCARGGLDWEGLLGLFAEM----RHEGIQPDIVTYNTLLCACSN 261
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A F + G+ PDI +Y L+ FGKL + + S + + + S G P
Sbjct: 262 RGLGDEAEMVFRTMNEG-GVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEIS 320
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
SY++L++A+ + + A V M AG P+ ET
Sbjct: 321 SYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAET 356
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ACS +G + F+ N P + ++ + LD+ + + +
Sbjct: 255 LLCACSNRGLGDEAEMVFRTMNEGGVVP---DITTYTYLVDTFGKLNRLDKVSELLKEMA 311
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
S+ G P+I SYN L+ A+ ++ +A+ VF + G PNA +YS+L+
Sbjct: 312 ST-GNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILL 361
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + S +FE + + GV + SY
Sbjct: 122 DWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSY 181
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++++ N + +L +++ M +PS T V C R
Sbjct: 182 TALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCAR 225
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + VI G D D+AY T+ + G+ PD+
Sbjct: 176 EALELLHMMADDRGGGSPP--DVVSYTTVINGFFKEGDSDKAYSTYHEM-LDRGILPDVV 232
Query: 108 SYNALIYAFGKLK------------KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+Y+++I A K + + E+ ++F+ +V +GVKP+ ++YS L+D +
Sbjct: 233 TYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 292
Query: 156 DQKAALSVIDEMVNAGFAPSKET 178
A+ ++ MV+ G P+ T
Sbjct: 293 KMDEAMKLLSGMVSVGLKPNTVT 315
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +Y+ LI + K EA ++ +VS+G+KPN ++YS L++ + +
Sbjct: 272 IGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 331
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 332 ALVLFKEMESSGVSP 346
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +H+Y+ALI A+ K+ + EA F + G+K + ++YS+++D L + K A
Sbjct: 506 GVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKA 565
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++ EM+ AGF P + + VRE
Sbjct: 566 AALYQEMIEAGFTPDTGLYEVMLPALVRE 594
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C+ +L A F + S+ PD+ +YNA+I +G+ +A +FE L
Sbjct: 340 NTLISACSRESNLKEAIGVFSHMESN-RCQPDLWTYNAMISVYGRCGFALKAEHLFEKLK 398
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S G P+A++Y+ L+ A + + + +EMV GF + T
Sbjct: 399 SNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMT 443
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ ACSR+ + V+ +E+ +R +P + A+ V C +A FE +
Sbjct: 342 LISACSRESNLKEAIGVFSHMES-NRCQPDLWTYNAMISVYGRCGFAL---KAEHLFEKL 397
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S+ G +PD +YN+L+YAF K T + + E +V +G + M+Y+ ++ + +
Sbjct: 398 KSN-GFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGR 456
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
AL + +M ++G P T
Sbjct: 457 HDEALRLYRDMKSSGRNPDAVT 478
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G D +YN +I+ +GK + EA R++ + S G P+A++Y++L+D +
Sbjct: 435 MGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEE 494
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V+ EM++AG P+ T
Sbjct: 495 ASKVMSEMLDAGVKPTLHT 513
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ + + L+ ++GK + EA R+ ++L ++G + + YS ++DA+L D KA
Sbjct: 1099 GIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAG 1158
Query: 161 LSVIDEMVNAGFAP 174
+ + EM A P
Sbjct: 1159 IEKLTEMKEAAIEP 1172
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 17 AYGDSII-DMEEIFSPFTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSV-AAI 73
A +S+I D ++++ +Y +R G FE ++ + F L EP S I
Sbjct: 254 AKAESVIADTVQVYNAMMGVY------ARNGNFEKVNEM-FNLMRERGCEPDIVSFNTLI 306
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N + CA + L A + + VG FGL PDI +YN LI A + EA VF H+
Sbjct: 307 NAKVKSCATVSGL--AIELLDEVGK-FGLRPDIITYNTLISACSRESNLKEAIGVFSHME 363
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S +P+ +Y+ ++ + A + +++ + GF+P T
Sbjct: 364 SNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVT 408
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P +Y ++I AF K + +A +FE L S G K + Y L++ + T+ D +
Sbjct: 1027 SLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQ 1086
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A ++++ M AG P+ T+ + + E DR+
Sbjct: 1087 KAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRI 1126
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + + + SS G PD +Y LI GK K EAS+V ++ GVKP +YS
Sbjct: 458 DEALRLYRDMKSS-GRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSA 516
Query: 147 LVDAH 151
L+ A+
Sbjct: 517 LICAY 521
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V N ++ G ++ A Q E + SS G PD +Y +L+YA + +T +
Sbjct: 634 PP--NVVTYNALVHGLCKSGRIEEACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDD 690
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A ++ L S G P+ ++Y++LVD + + A++V++EMV G P T +
Sbjct: 691 ALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLID 750
Query: 185 RCVREMDEESNDRVEA 200
+ D E R+
Sbjct: 751 SLCKAGDLEEARRLHG 766
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQL--E 58
+GD+ RA N ++++E + T + AC FE +++ ++ +
Sbjct: 545 LGDVSRALQVYNR--------MLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 596
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
NL +P + A+ I G ++ A + +G+ G+ P++ +YNAL++ K
Sbjct: 597 NL---QPDVMTFGAL---IDGLCKAGQVEAARDILDLMGN-LGVPPNVVTYNALVHGLCK 649
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + E +VS G P++++Y LV A AL ++ E+ + G+ P T
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +D A F+ + + G P++ +YNAL+ K K A + E +V
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 424
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV P+ ++YS+LVDA AL ++ M + G P+ T +
Sbjct: 425 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++RA+ E++ G+TPD+ +Y+ L+ AF K EA +
Sbjct: 888 NVVTYNVLMNGLCKTDKMERAHAMIESMVDK-GVTPDVITYSVLVDAFCKASHVDEALEL 946
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM-VNAGFAPSKET 178
+ S G PN ++++ ++D + A + D+M + G AP K T
Sbjct: 947 LHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKIT 997
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G D A F+ + + G P++ +YN L+ K K A + E +V
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAG-GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDK 918
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV P+ ++YS+LVDA AL ++ M + G P+ T +
Sbjct: 919 GVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSI 965
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++RA+ E++ G+TPD+ +Y+ L+ AF K + EA +
Sbjct: 394 NVITYNALVNGLCKADKMERAHAMIESMVDK-GVTPDVITYSVLVDAFCKASRVDEALEL 452
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM-VNAGFAPSKET 178
+ S G PN ++++ ++D + A + D+M + G P K T
Sbjct: 453 LHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKIT 503
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S ++PD +++ LI K +T EA VF+ +++ G PN ++Y++L++
Sbjct: 846 GSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905
Query: 158 KAALSVIDEMVNAGFAP 174
+ A ++I+ MV+ G P
Sbjct: 906 ERAHAMIESMVDKGVTP 922
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S ++PD +++ LI K + EA VF+ +++ G PN ++Y+ LV+
Sbjct: 352 GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 411
Query: 158 KAALSVIDEMVNAGFAP 174
+ A ++I+ MV+ G P
Sbjct: 412 ERAHAMIESMVDKGVTP 428
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKL 119
SR+ P +V + +I G + +D A + E S + P+I +YN+ + K
Sbjct: 279 SRSCVP--NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ 336
Query: 120 KKTFEASRVFEHL--VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
T EA + L SL V P+ +++S L+D A SV D+M+ G+ P+
Sbjct: 337 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVI 396
Query: 178 TLKK-VRRRCVREMDEESNDRVEALAKK 204
T V C + E ++ +E++ K
Sbjct: 397 TYNALVNGLCKADKMERAHAMIESMVDK 424
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 66 PYKSVAAINCVILGCANIWDLDRA-YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P A NC I G + + D+ RA ++ E L PD ++N LI K +
Sbjct: 1022 PDPDTYAFNCCINGLSKLGDVSRALHRMLE-----LELVPDKVTFNILIAGACKAGNFEQ 1076
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDA 150
AS +FE +V+ ++P+ M++ L+D
Sbjct: 1077 ASALFEEMVAKNLQPDVMTFGALIDG 1102
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGK 118
+SR P +V + +I G + +D A + E + S + P+I +YN+ + K
Sbjct: 772 VSRCCVP--NVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCK 829
Query: 119 LKKTFEASRVFEHL--VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
EA + L SL V P+ +++S L+D A +V D+M+ G+ P+
Sbjct: 830 QSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNV 889
Query: 177 ETLKKVRRR-CVREMDEESNDRVEALAKK 204
T + C + E ++ +E++ K
Sbjct: 890 VTYNVLMNGLCKTDKMERAHAMIESMVDK 918
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
VA N V+ + RA + F + G+ P I +YN +I K + +F
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKKV 182
E LV G P+ ++Y+ L+D+ D + A + +M + P+ T L KV
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299
Query: 183 -----RRRCVREMDEESND 196
R ++EM +S D
Sbjct: 300 GRIDEARELIQEMTRKSCD 318
>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
Length = 363
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQL----ENLSRAEPPYKSVAAINCVILGCAN 82
E+ + F + + +C GF LD + + L +A P V ++ G N
Sbjct: 70 EMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALP--DVVTFPTLVEGYCN 127
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+D A + E + +S +PD+++Y +L+ F K+K+ EA RV + + +PN +
Sbjct: 128 AGLVDDAERLLEEIVAS-DCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVV 186
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
Y+ L+DA + A +++EMV G P+ T + +
Sbjct: 187 IYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSL 226
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G PDI++YN LI K + E +R+F + + P+ ++YS L+
Sbjct: 37 TATGCLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRI 96
Query: 158 KAALSVIDEMVNAGFAP 174
A ++ D+M+ P
Sbjct: 97 NMACTLFDDMLKQAALP 113
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y ALI AF K A ++ E +V GV+PNA++Y L+ D + A +
Sbjct: 183 PNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKM 242
Query: 164 IDEM 167
++ +
Sbjct: 243 LERL 246
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKLDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN++S++ L+D H + A+ + +M++ +P
Sbjct: 229 FDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSP 274
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L+N +A V + +I G LD A + F+ + + GL P+ S+ LI
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDN-GLVPNSVSFTTLID 249
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K + A +++ ++S + P+ ++Y+ L+ N D K A +I+EM G P
Sbjct: 250 GHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKP 309
Query: 175 SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
K T + +E D E+ K +IR++
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + +GL P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ A + DEM++ G P+
Sbjct: 214 NGLCKESKLDDANELFDEMLDNGLVPN 240
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ C N DL+R +Q + S + D +YN LI G+ K+ EA +FE +
Sbjct: 377 NCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMK 436
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+G+KPN +S++ L+D+ + A +EM
Sbjct: 437 QIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEM 470
Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL R F LNE + + I ++EI + L+ C RK + L+ E +
Sbjct: 387 GDLNRGFQLLNEMKQSQS---IQLDEI-----TYNTLIKGCGRK--KRLNEAISLFEEMK 436
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF----G 117
+ ++ N ++ C ++ A++ FE + +G+ PD +Y+ L+
Sbjct: 437 QIGIKPNRIS-FNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHS 495
Query: 118 KLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ A + E + G KP+ + Y+ L+DA + + + + + EM N PS
Sbjct: 496 NRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSS 555
Query: 177 ET 178
T
Sbjct: 556 VT 557
Score = 44.7 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
LV AC R + LD +E + P +V +I G + + A + F +
Sbjct: 596 LVDACVRN--DRLDQALQFIEQMKSQNLPINTVL-YTTIIKGFCKLNQTEEAMKYFSLMK 652
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ P++ +YN+L+ K +A ++F+ LV +KP+ +++S L+ H +
Sbjct: 653 QNQRTYPNLITYNSLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRGNM 712
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
K + M++ P + L+ + C+ +
Sbjct: 713 KRLNETVQTMLHYQINPDESLLQLILESCLNQ 744
Score = 43.1 bits (100), Expect = 0.094, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N + +N +L RA E + + PD YN+LI A K + + ++F+ +
Sbjct: 487 VNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEM 546
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+ ++P++++Y +L+ A+ D A + +EM + T + CVR
Sbjct: 547 KNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVR---- 602
Query: 193 ESNDRVEALAKKFDIRMNTEN 213
NDR++ A +F +M ++N
Sbjct: 603 --NDRLDQ-ALQFIEQMKSQN 620
>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 693
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+L ++AE AA + +I C + + D + + G P++ +YNAL+Y
Sbjct: 247 LKLYGRAKAEKWRVDTAAFSALIKMCGMLENFDGCLSVYNDM-KVLGAKPNMVTYNALLY 305
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A G+ K+ +A ++E ++S G PN +++ L+ A+ R + AL V EM G
Sbjct: 306 AMGRAKRALDAKAIYEEMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKEMKGNGMDI 365
Query: 175 SKETLKKVRRRC 186
+ + K+ C
Sbjct: 366 TADLYNKLLAMC 377
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ CA++ DRA + F + SS PD +++++I + + K EA + ++
Sbjct: 371 NKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMI 430
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +P + L+ + + + + ++++ G P+
Sbjct: 431 QSGFQPTIFVMTSLICCYGKAKRTDDVVKIFKQLLDLGIVPN 472
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + ++D+AY+ F + ++PD+ +YN+LI K K+ ++ RV
Sbjct: 157 VCSYNTLIDGFSKEGEVDKAYELFYKMIEQ-SVSPDVVTYNSLIDGLCKTKEMVKSERVL 215
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E +V G++PN +Y+ L+ + T K ++ V EM ++G P
Sbjct: 216 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP 260
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYN LI F K + +A +F ++ V P+ ++Y+ L+D ++ +
Sbjct: 152 GLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKS 211
Query: 161 LSVIDEMVNAGFAPSKET 178
V+++MV+AG P+ +T
Sbjct: 212 ERVLEQMVDAGIRPNNKT 229
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 472 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 530
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ Y++++ R AA + EM+ +G S +T V C
Sbjct: 531 FRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCR 590
Query: 188 REMDEESN---DRVEALAKKFDIRMNTENRKNILFNLEYSA 225
+E+N +++ A+ KFDI I FN+ SA
Sbjct: 591 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISA 622
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
A +W + + F+ + SS GL P + + N+ I+A + + EA +F+ +V G KPN
Sbjct: 240 AGMWK--ESVRVFKEMSSS-GLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPN 296
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+SYS L+ + S+++ MV+ G P+
Sbjct: 297 IISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 331
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 468 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 527
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 528 LTVFRDMLHKGVKPT 542
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 399 PP--SEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAE 456
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 457 GKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 507
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I A +D+A FE + + G+ PD ++ +I + ++ + +A F H+V
Sbjct: 336 NILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 394
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+GV P+ Y L+ + + A +I EM+N P
Sbjct: 395 DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPP 435
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G ++ ++ + E + + G+ P+ +YN+LIY + E+ RVF
Sbjct: 192 VVTYNSLIDGLCKTKEMVKSERVLEQMVDA-GIRPNNKTYNSLIYGYSTAGMWKESVRVF 250
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + S G+ P ++ + + A + K A + D MV G P+
Sbjct: 251 KEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPN 296
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I++YN LI + ++ + A VF L+ G+ P+ SY+ L+D + A +
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220
+M+ +P T + + + ++RV IR N + ++++
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYG 236
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ PD+ +YN +I K EA +F
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSEADLLF 550
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G PN +Y++L+ AHL D + +I+E+ GF+ T+K V
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMV 603
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +++ALI F K K EA + + ++ G+ P+ ++Y+ L+D A
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372
Query: 162 SVIDEMVNAGFAPSKET 178
++D MV+ G P+ T
Sbjct: 373 HMLDLMVSKGCGPNIRT 389
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 22 IIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+ID +FS V K ++ + + Q+E A Y INC C
Sbjct: 72 LIDFSRLFS---------VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINC----CC 118
Query: 82 NIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
L A F A+G G PD +++ LI + EA + + +V +G KP
Sbjct: 119 RCRKLSLA---FSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + LV+ N A+ +ID MV GF P++ T
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + F + S G+ D +YN LI F +L K A +F+ +VS V+P+ +SY
Sbjct: 403 IDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461
Query: 146 LLVDAHLTNRDQKAALSVIDEM 167
+L+D N + + AL + +++
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKI 483
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G DI Y LI F + + +++ ++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIK-GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ P+ +++S L+D + + A + EM+ G +P T
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVT 354
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ + PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFKYRKRMI 338
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNXLVPNGVT 243
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
>gi|212275340|ref|NP_001130930.1| uncharacterized protein LOC100192035 [Zea mays]
gi|195614146|gb|ACG28903.1| hypothetical protein [Zea mays]
gi|219885707|gb|ACL53228.1| unknown [Zea mays]
gi|413935208|gb|AFW69759.1| hypothetical protein ZEAMMB73_548432 [Zea mays]
Length = 748
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 238 GVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESA 297
Query: 161 LSVIDEMVNAG 171
V DEM G
Sbjct: 298 RKVFDEMAGEG 308
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V+ N +I G ++ A + F + G+TPD+ +YN L+ A+ + A +VF
Sbjct: 243 VSTYNTLIWGFGLCKKMETAVRVFGDM-KGHGVTPDVTTYNTLLNAWVRAGDLESARKVF 301
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G + N++SY++++ ++ + A+++ EM G S++T
Sbjct: 302 DEMAGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKT 350
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + PD + ALI A+G+ EA ++F + ++GV A+SY+ ++ A L +
Sbjct: 166 SFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMMPNIGVPRTALSYNAVLKAILCRGREA 225
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M+ G AP T
Sbjct: 226 MARRIYNAMIADGVAPDVST 245
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 100 FGLTPDIH------SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
F + P+I SYNA++ A + A R++ +++ GV P+ +Y+ L+
Sbjct: 196 FRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGL 255
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ + A+ V +M G P T + VR D ES +V
Sbjct: 256 CKKMETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKV 300
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 54 YFQLENLSRAEPPYKSVAA---------INCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
Y +L + A+ +K +A C++ G N L+ A E + ++ G+ P
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 358
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +Y+ ++ + + K+ EA+ + +++ V PNA++YS L+D A+ V+
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVL 418
Query: 165 DEMVNAGFAPSKETLKKVRRRCVR--EMDE 192
MVN PS T V R +MDE
Sbjct: 419 KNMVNKRVEPSVGTFNSVIGALCRLGDMDE 448
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N +D A + ++ + +S PD+ +Y ALI F K +A ++ +
Sbjct: 154 LITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 213
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
PN ++YS L+ D AL + M + G P+
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPN 253
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V+ G +AY+ + + + PD+ +Y+ +I F K + A + +V
Sbjct: 45 NVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 104
Query: 134 SL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G+ P+ ++Y+ +VD + A ++ EM G P K T
Sbjct: 105 TRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT 150
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G DLD+A F + +S G P++ +Y LI+ K A + + + +
Sbjct: 228 GLCKAGDLDQALDLFRRM-TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP 286
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ +SY+ L+D + + A + EM P + T
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRIT 326
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
M E +P Y +VV K T Y L+ + + + + VI G
Sbjct: 33 MREFVAPNERTYNVVVNGLCKARLT-SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQG 91
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++DRA + + + G+ PD+ +Y +++ + K A + + GV+P+ ++
Sbjct: 92 EMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTF 151
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNA 170
S L+ R AL + E++ +
Sbjct: 152 SALITGWCNARKVDEALKLYKEILTS 177
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++D+A Q E + G+ PDI +YN LI K + A +F+ +
Sbjct: 639 NSLISGSCKQGNVDKASQLLEEMCIK-GINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 697
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
G+ PN ++Y+ +VD + +++ AA +++EM+ G P + C +E
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 753
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G LD A + ++ GL PD+++Y+ LI F K++ EA + ++
Sbjct: 254 NVIIGGLCRARLLDEAIELKRSMVDK-GLVPDLYTYDILINGFCMEKRSREAKLMLLEMI 312
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+G+KP ++Y+ L+D + D + A + DEMV G
Sbjct: 313 DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 351
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G +++RA F+ + GLTP+ +Y A++ + K K A ++
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDDI-EGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E ++ GV P+A Y+++++ + AL + EM+ GFA + + C
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSG 788
Query: 190 MDEESNDRVEALAKK 204
+E+N +E + +K
Sbjct: 789 KLQEANHLLEEMIEK 803
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D+++A++ + + + G+ ++ +N L+ K K +A + + ++
Sbjct: 324 NALIDGFMRQGDIEQAFRIKDEM-VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+P++ +YSLL++ H ++ A ++DEM AP+
Sbjct: 383 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPT 424
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ YN+LI F K K+ EA ++ ++PNA +Y +D + + + A
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549
Query: 161 LSVIDEMVNAGFAPS 175
+EM++ G P+
Sbjct: 550 DRYFNEMLSCGVLPN 564
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +YNALI F + +A R+ + +V+ G++ N + ++ L++ + A
Sbjct: 315 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 374
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220
L ++ EM+ G P +T + E + R + +A+ F++ + RK
Sbjct: 375 LEIMQEMMEKGVEPDSQTYSLLI---------EGHCRGQNMARAFELLDEMKKRKLAPTV 425
Query: 221 LEYS 224
L YS
Sbjct: 426 LTYS 429
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P +Y +L++ + + E S +FE +V+ G++P+ M+Y +++DA+ + A
Sbjct: 840 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899
Query: 162 SVIDEMVNAGFAPS 175
+ DE++ G S
Sbjct: 900 KLKDEILVKGMPMS 913
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I L R + EA G GL P+ +YN+LI K +AS++ E + G+
Sbjct: 607 IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 666
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P+ ++Y++L+D + + A ++ D++ G P+
Sbjct: 667 NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 704
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P+ H+Y A I + K + A R F ++S GV PN Y+ L++ H + A
Sbjct: 526 LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAF 585
Query: 162 SV 163
SV
Sbjct: 586 SV 587
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
++ F+ + + + PD+++Y +I A K+ +A RV + G PN ++Y++++
Sbjct: 200 WKVFDGM-CAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIG 258
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
R A+ + MV+ G P
Sbjct: 259 GLCRARLLDEAIELKRSMVDKGLVP 283
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P++ Y ALI K EA VF ++S V + +YS+L+ N
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617
Query: 159 AALSVIDEMVNAGFAPS 175
A + E+ G P+
Sbjct: 618 EAFGIFSELQEKGLLPN 634
>gi|367036697|ref|XP_003648729.1| hypothetical protein THITE_2106504 [Thielavia terrestris NRRL 8126]
gi|346995990|gb|AEO62393.1| hypothetical protein THITE_2106504 [Thielavia terrestris NRRL 8126]
Length = 724
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P +H+++ L+ AF K+K E R+ E + GVKPN +++++L+DA + D K +
Sbjct: 458 PSVHTWSILLQAFAKMKGVQEGWRILEIMRKHGVKPNRVTWNMLIDASARSHDAKLTMEA 517
Query: 164 IDEMVNAGFAPSKETLKKVRR 184
+ G+ P T++ + R
Sbjct: 518 FTHLEKEGYVPDTYTMRGLSR 538
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + ++ G N +D A + E + +S +PD+++Y +L+ F K+ + EA RV
Sbjct: 392 VVTFSTLVEGYCNAGLVDDAERLLEEMVAS-DCSPDVYTYTSLVDGFCKVGRMVEARRVL 450
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + G +PN ++Y+ L+DA A +++EMV G P+
Sbjct: 451 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPN 496
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + + RAY + + S GL P++ +Y+ +I+ F + K A ++F +V
Sbjct: 46 NVLINGFCKVHKVHRAYLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 104
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G PN ++Y+ L+ N A ++DEM G P K
Sbjct: 105 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 147
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A Q E + TP++ +Y++LI K + +A VF+ ++ G++PN ++Y+
Sbjct: 233 LQEAQQVLETM-EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYN 291
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ +AL +++EM G P
Sbjct: 292 SLIHGFCMTNGVDSALLLMEEMTATGCLP 320
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP V A + +I G LD A + FE + + PD+ ++ AL+ K + E
Sbjct: 179 PP--DVVAYSTLIAGLCKTGRLDEACKLFEKMREN-SCEPDVVTFTALMDGLCKGDRLQE 235
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A +V E + PN ++YS L+D + A V M+ G P+
Sbjct: 236 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y ALI AF + K A ++ E +V GV+PN ++Y L+ D + A
Sbjct: 457 GCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEA 516
Query: 161 LSVIDEM 167
+++ +
Sbjct: 517 RKMLERL 523
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G +D A E + ++ G PDI +YN LI K + EA+R+
Sbjct: 286 NVVTYNSLIHGFCMTNGVDSALLLMEEM-TATGCLPDIITYNTLIDGLCKTGRAPEANRL 344
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F + + P+ ++YS L+ A ++ D+M+ P
Sbjct: 345 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLP 390
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI F K+ K A + + + G+ PN ++YS ++ A
Sbjct: 37 GTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTA 96
Query: 161 LSVIDEMVNAGFAPS 175
+ +MV G P+
Sbjct: 97 YKLFRQMVENGCMPN 111
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A+ F + + PD +YN +I F + EA RVF+ +
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMG 604
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G++P+ +Y L++ H+T + K A + DEM++ GFAP
Sbjct: 605 ASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAP 645
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+ V+ ++ S A V + N +I G + +++ A + ++ + G
Sbjct: 238 CKHRRFDKAKEVFRAMDQCSVA----PDVRSFNILIGGFCRVGEVEEAMKFYKEM-QQRG 292
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ S++ LI F K A+ + LG+ P+ + Y++++ AL
Sbjct: 293 VTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352
Query: 162 SVIDEMVNAGFAP 174
V DEMV G P
Sbjct: 353 RVRDEMVGLGCLP 365
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + ++A Q F+ + L PD+ +YN+LI + +A+ +++ + +
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQR-LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR 466
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ PN ++YS+L+D+H + A +DEMV+ G P+ T +
Sbjct: 467 EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSI 513
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG G PD+ +YN L+ K + +A + + GV P+ +++ L+ +
Sbjct: 357 EMVG--LGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCR 414
Query: 154 NRDQKAALSVIDEMVNAGFAP 174
+ + + AL + D +++ P
Sbjct: 415 DGNFEKALQLFDTLLHQRLRP 435
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
++ N +++++ K + +A V + V P+ +++++L+DA D AA++++D
Sbjct: 158 YTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDS 217
Query: 167 MVNAGFAPSKETLKKV 182
M N G P T V
Sbjct: 218 MANKGLKPGIVTFNSV 233
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C+ +LD A FE + +S PD+ +YNA++ G+ K EA +F+ LV
Sbjct: 70 NTLISACSQGSNLDDAVAVFEEMIAS-ECRPDLWTYNAMVSVHGRCGKAQEAELMFKELV 128
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G +P+A++Y+ L+ A D + V +E+V AGF
Sbjct: 129 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 167
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + LD A ++ + + G TPD +Y L+ + GK+ + EA +V E +
Sbjct: 175 NTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 233
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G+KP +++S L+ A+ + Q A D MV +G P +
Sbjct: 234 DAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDR 276
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCV------ILGCANIWDLDR---AYQTFEAVG 97
+ T+ +Y ++ L A Y + AI C + ++ +DR A + E +
Sbjct: 174 YNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 233
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL P + +++ALI A+ K + +A R F+ +V GVKP+ ++Y +++D + +
Sbjct: 234 DA-GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDET 292
Query: 158 KAALSVIDEMVNAGFAP 174
+ + + M+ G+ P
Sbjct: 293 RKLMVLYRAMIKDGYKP 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ A D++R + E + + G D +YN +I+ +GK+ + A +++ +
Sbjct: 140 NSLLYAFAKEGDVERVERVCEELVKA-GFRKDGITYNTMIHMYGKMGRLDLALGLYDEMR 198
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFAPS 175
++G P+A++Y++LVD+ L D+ A V++EM +AG P+
Sbjct: 199 AIGCTPDAVTYTVLVDS-LGKMDRISEAGKVLEEMADAGLKPT 240
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K RV E LV G + + ++Y+ ++ + A
Sbjct: 131 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 190
Query: 161 LSVIDEMVNAGFAPSKET 178
L + DEM G P T
Sbjct: 191 LGLYDEMRAIGCTPDAVT 208
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 61 GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV-EALAK 203
+ E+V GF P T + +E D E +RV E L K
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK 164
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W +RA++ F + S P++H+Y A+I + K +K A +FE + G+ P
Sbjct: 947 CKKGWT-ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVP 1005
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
N +Y+ L+D H + A +++ M N GF P+ T V C R EE+
Sbjct: 1006 NTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 1061
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDIH Y LI AF + ++ ++F+ ++ LG+ P +Y+ ++ + + A
Sbjct: 1107 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 1166
Query: 161 LSVIDEMVNAGFAP 174
+ +M + G AP
Sbjct: 1167 VKFFQKMSDHGCAP 1180
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 26 EEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E+ P T+ Y ++ C F S ++L L E + + N ++ G +
Sbjct: 1000 EQGLVPNTNTYTTLIDGHCKAGNF----SKAYELMELMSNEGFFPNTCTYNSIVDG---L 1052
Query: 84 WDLDRAYQTFEAVGSSFG--LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
RA + F+ + + F + D +Y LI K +A + +G +P+
Sbjct: 1053 CKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDI 1112
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y+ L+ A K + + DE++ G AP+KET
Sbjct: 1113 HLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKET 1149
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++D+A Q E + G+ PDI +YN LI K + A +F+ +
Sbjct: 630 NSLISGSCKQGNVDKASQLLEEMCIK-GINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 688
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
G+ PN ++Y+ +VD + +++ AA +++EM+ G P + C +E
Sbjct: 689 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 744
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+++Y+ LI F K++ EA + ++ +G+KP ++Y+ L+D + D + A
Sbjct: 271 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA 330
Query: 161 LSVIDEMVNAGF 172
+ DEMV G
Sbjct: 331 FRIKDEMVACGI 342
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G +++RA F+ + GLTP+ +Y A++ + K K A ++
Sbjct: 661 IVTYNILIDGLCKAGEIERAKNLFDDI-EGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E ++ GV P+A Y+++++ + AL + EM+ GFA + + C
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSG 779
Query: 190 MDEESNDRVEALAKK 204
+E+N +E + +K
Sbjct: 780 KLQEANHLLEEMIEK 794
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D+++A++ + + + G+ ++ +N L+ K K +A + + ++
Sbjct: 315 NALIDGFMRQGDIEQAFRIKDEM-VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 373
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+P++ +YSLL++ H ++ A ++DEM AP+
Sbjct: 374 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPT 415
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ YN+LI F K K+ EA ++ ++PNA +Y +D + + + A
Sbjct: 481 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 540
Query: 161 LSVIDEMVNAGFAPS 175
+EM++ G P+
Sbjct: 541 DRYFNEMLSCGVLPN 555
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +YNALI F + +A R+ + +V+ G++ N + ++ L++ + A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220
L ++ EM+ G P +T + E + R + +A+ F++ + RK
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLI---------EGHCRGQNMARAFELLDEMKKRKLAPTV 416
Query: 221 LEYS 224
L YS
Sbjct: 417 LTYS 420
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P +Y +L++ + + E S +FE +V+ G++P+ M+Y +++DA+ + A
Sbjct: 831 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 890
Query: 162 SVIDEMVNAGFAPSKETLK 180
+ DE++ G P K +
Sbjct: 891 KLKDEILVKGM-PMKSGFR 908
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I L R + EA G GL P+ +YN+LI K +AS++ E + G+
Sbjct: 598 IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGI 657
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P+ ++Y++L+D + + A ++ D++ G P+
Sbjct: 658 NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 695
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P+ H+Y A I + K + A R F ++S GV PN Y+ L++ H + A
Sbjct: 517 LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAF 576
Query: 162 SV 163
SV
Sbjct: 577 SV 578
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P++ Y ALI K EA VF ++S V + +YS+L+ N
Sbjct: 549 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 608
Query: 159 AALSVIDEMVNAGFAPS 175
A + E+ G P+
Sbjct: 609 EAFGIFSELQEKGLLPN 625
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+A+ + + L P + S+N L+ + KL E R+ + + GV+P+ +YS+L+
Sbjct: 155 AQSVFDAI-TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ A + DEM++ G P+ T
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVT 243
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYMPS 415
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+ D+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 257 VDLAMEIYKQMLSQ-SLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315
Query: 146 LLVDAHLTNRDQKAALSVIDEMV 168
L+D + D + A M+
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMI 338
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LE + R PP V VI G DRA F+ + + G+ P+I +YN LI+ +
Sbjct: 227 LEMMDRGIPP--DVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN-GVKPNIDTYNCLIHGY 283
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ K E R+ E + + G KPN +Y L++ N + A D M+ G PS
Sbjct: 284 LSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSV 343
Query: 177 ET 178
T
Sbjct: 344 TT 345
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C+ +E ++ ++F++ N+ P I C + + + R + E +G
Sbjct: 459 CTVDKWEKVEELFFEMLNVG-IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG---- 513
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ SYN LI EAS++ E +VS+G+KP++ SY+ L+ + +A
Sbjct: 514 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
S +M++ G P T +
Sbjct: 574 SHFRKMLSNGITPGVVTYNTI 594
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A F + GL+PD SY ALI A KL + +A F +++ GV P+ + +S
Sbjct: 394 IDKAMDIFNKMRQQ-GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFS 452
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LV T + + EM+N G P+
Sbjct: 453 SLVYGLCTVDKWEKVEELFFEMLNVGIHPN 482
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G +D A + E + S GL PD SYN L++ + K + A F
Sbjct: 518 VISYNTLIDGHCLAGTIDEASKLLEGM-VSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHF 576
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++S G+ P ++Y+ ++ + A + M+N+G
Sbjct: 577 RKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ H +N A+ K +A +F + G+ P+A+SY L+DA A
Sbjct: 373 GISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDA 432
Query: 161 LSVIDEMVNAGFAP 174
++M+N G P
Sbjct: 433 EVKFNQMINEGVTP 446
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A +E + GL+PD +Y+ +I GK A R+F +V G PN ++Y+
Sbjct: 472 LDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 530
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L+ R+ + AL + +M NAGF P K T
Sbjct: 531 ILIALQAKARNYQTALKLYRDMQNAGFKPDKVT 563
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI+++G+ EA VF + +G +P+ ++Y L+D H A
Sbjct: 416 GCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVA 475
Query: 161 LSVIDEMVNAGFAP 174
+S+ + M G +P
Sbjct: 476 MSMYERMQEVGLSP 489
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 62/108 (57%), Gaps = 17/108 (15%)
Query: 47 FETLDSVYFQLE--NLSRAEPPYKSVAAINCVILGCANIW----DLDRAYQTFEAVGSSF 100
E ++V+F+++ N EP Y + ++W ++++A++ + A+ +
Sbjct: 577 LEEAEAVFFEMKQNNWVPDEPVYGLLI----------DLWGKAGNVEKAWEWYHAMLRA- 625
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
GL P++ + N+L+ AF ++ + +A + +++V+LG+ P+ +Y+LL+
Sbjct: 626 GLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLL 673
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ ++ +++ E +V G +PN ++Y+ L+ ++ A
Sbjct: 381 GFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEA 440
Query: 161 LSVIDEMVNAGFAPSKET 178
L+V ++M G P + T
Sbjct: 441 LNVFNQMQEMGCEPDRVT 458
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKA 159
G ++++Y+A++ A+G+ + EA +VF+ + G KPN ++Y+ ++DA D K
Sbjct: 230 GFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQ 289
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
AL + DEM G P + T + C R E + RV A ++ I +
Sbjct: 290 ALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQD 340
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D+ +YNALI A+GK K +A+ +F+ + G+ PN ++YS L+D++ +
Sbjct: 441 GLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDV 500
Query: 161 LSVIDEMVNAGFAP 174
+V E AG P
Sbjct: 501 SNVFTEFKRAGLKP 514
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ +Y+ALI ++ K + S VF G+KP+ + YS L+D+ + A
Sbjct: 476 GLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDA 535
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ EM AG P+
Sbjct: 536 VVLLQEMTQAGIQPN 550
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI + KL + +A + + +G+K + ++Y+ L+DA+ K A
Sbjct: 406 GVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDA 465
Query: 161 LSVIDEMVNAGFAPS 175
+ D+M G P+
Sbjct: 466 ACLFDKMKGEGLVPN 480
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 8 FITLNEFETAYGDSIIDMEEIFSPFTSLY------------PLVVACSRKG-FETLDSVY 54
IT N A G +D+++ F + L+ CSR G +E V+
Sbjct: 270 LITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVF 329
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+++ + + I+ V G ++ A + ++P++ +Y+ +I
Sbjct: 330 AEMQRRGIEQDIFTFNTLIDAVCKGG----QMELAASIMTTMRGK-NISPNVVTYSTMID 384
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+GKL EA ++ + GV+P+ +SY+ L+D
Sbjct: 385 GYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLID 419
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A+ F+ + S G PD+ SY +LI FG+ ++ A VF+ + KPN +SY+ L+
Sbjct: 166 AFSVFDEMKRS-GFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALM 224
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
DA+ +N A+ ++ EM G P+ ++ + C R + + D V + A+ I
Sbjct: 225 DAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH 284
Query: 209 MNT 211
+NT
Sbjct: 285 LNT 287
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N VI + +A + F ++ PD+ ++ ++
Sbjct: 62 YFELMKGTNIRP---DTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSI 118
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + + VF +++ G+KPN +SY+ L+ A+ ++ K A SV DEM +GF
Sbjct: 119 IHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGF 178
Query: 173 AP 174
P
Sbjct: 179 CP 180
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C+ + D +A + SF L + + N L+ GK KT ++F V+LG
Sbjct: 471 ACSILRDWRKATDLINLMEPSFHLV-SLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSS 529
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
N +YS+L+ L+ + + V+ M +AG PS
Sbjct: 530 VNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPS 566
>gi|414587959|tpg|DAA38530.1| TPA: hypothetical protein ZEAMMB73_367044 [Zea mays]
Length = 537
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V +N VI GC L R + +E +GS G D+H+Y+ L++ KL +
Sbjct: 178 PEVNVVMLNTVICGCLMEGKLARVTKLYEMMGSK-GCPSDVHTYSILMHGLCKLGRFGSG 236
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
R+ + + PN M+YS L+ + N A +++D+M+ GF+
Sbjct: 237 VRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDARAMLDQMLAKGFS 284
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + + YN +IYA K K +A+R+ + + S G KP+ +Y+ L+ A + +
Sbjct: 282 GFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLIKALCKEGNVDWS 341
Query: 161 LSVIDEMVNAGFAPS 175
+++++EMV G P+
Sbjct: 342 MALLEEMVTKGIKPN 356
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+A + + + S G PDI +YN LI A K + + E +V+ G+KPN SY+
Sbjct: 303 LDQATRLVQEMKSQ-GCKPDICTYNGLIKALCKEGNVDWSMALLEEMVTKGIKPNNFSYN 361
Query: 146 LLVD 149
+L++
Sbjct: 362 MLIN 365
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G D++++N L+ L++ EA+R+ + +++ G P+AM+Y L+ R
Sbjct: 110 MGCAADVNTFNDLVLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLCRTRQADE 169
Query: 160 ALSVIDEM 167
A +++ +
Sbjct: 170 ACTLLGRL 177
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-----NIWDLDRAYQTFEAVGSSF- 100
+ TL S Y +L+ AE +KS+A C A N++ ++ E V
Sbjct: 883 YTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMK 942
Query: 101 --GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G P + + + L+ ++GK T +A V E L +G+ P+A+ Y+ ++++HL N+D
Sbjct: 943 ADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYL 1002
Query: 159 AALSVIDEMVNAGFAPSKETL 179
+A+ + +M +A P+ T+
Sbjct: 1003 SAVIWLRKMTDACVRPTHVTI 1023
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+I +Y LI A+G+L+ +A VF+ + G KP+A +Y+++++ + + +
Sbjct: 875 GNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKI 934
Query: 161 LSVIDEMVNAGFAPSKETL 179
VI++M GF PS T+
Sbjct: 935 EEVIEQMKADGFEPSLTTI 953
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ N ++ AFG+ K E S ++ L +G+ PN+ ++ ++ A N + + A
Sbjct: 700 GLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEA 759
Query: 161 LSVIDEMVNAGFAPSKETLK 180
S+ +M AGF+PS + K
Sbjct: 760 RSMYRQMREAGFSPSIQVFK 779
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D+ YN +I + KL +A+ VF+ + +G P+A +++ L+ + N+ + A
Sbjct: 805 GLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEA 864
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ EM+ G AP+ T
Sbjct: 865 QALLREMIKTGNAPNIST 882
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + +A +FE + G P+ +Y+ ++ + +AA
Sbjct: 180 GLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAA 239
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
S+ M GF P T V R+ E +R+ + +
Sbjct: 240 SSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 282
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +++A+I A+ K +A + ++ GV+P+ ++YS+++D + + +
Sbjct: 358 PTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIIL 417
Query: 164 IDEMVNAGFAP 174
MV +G P
Sbjct: 418 YKAMVGSGLKP 428
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
A+I ++GKLK A VF L G N +YS L+ A+ + + A +D MV A
Sbjct: 640 AIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAA 699
Query: 171 GFAPS 175
G P+
Sbjct: 700 GLQPN 704
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DL+ A++ + + G PD+ S+N +I K K +A + E +
Sbjct: 365 NAIINGHCKENDLESAHRVMDEMVEK-GCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMP 423
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G P+ +SY ++ D K A S++DEM+ G+ P E++ K+ R +E + E
Sbjct: 424 RRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNME 483
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVIL-GCANIWDLDRAYQTFEAVGSSFGLT 103
K F+ ++ + QL+ +R P V N + G A++ DRA+Q FE + SF
Sbjct: 129 KMFDEMEEILQQLKQETRFAP--HEVIFCNVIAFYGRAHL--PDRAFQVFERI-PSFRCK 183
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
+ S N+L+ A K ++ + ++VF + + G P+A ++++L+ A D A V
Sbjct: 184 RTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNILIHAACLCGDLDAVWGV 242
Query: 164 IDEMVNAGFAPS 175
DEM G P+
Sbjct: 243 FDEMQKRGVKPN 254
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 76 VILGCANIWDLDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I G + +L+ A++ E V S+ L + Y+ LI A K + E S + +
Sbjct: 297 LIKGFCGVGELNFAFKLKEEMVTSNVKLVSAV--YSTLISALFKHGRKEEVSDILREMGE 354
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G KP+ ++Y+ +++ H D ++A V+DEMV G P
Sbjct: 355 NGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKP 394
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V ++N ++ L++ Q F + S++G +PD ++N LI+A
Sbjct: 184 RTVKSVNSLLAALLKNRQLEKMTQVFVDI-SNYG-SPDACTFNILIHAACLCGDLDAVWG 241
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
VF+ + GVKPN +++ L+ N K AL + ++MV
Sbjct: 242 VFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMV 282
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
+ E + V+ + N + N +I DLD + F+ + G+ P
Sbjct: 200 RQLEKMTQVFVDISNYGSPD-----ACTFNILIHAACLCGDLDAVWGVFDEMQKR-GVKP 253
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSV 163
++ ++ LIY K EA R+ E +V + +KPNA Y+ L+ + A +
Sbjct: 254 NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKL 313
Query: 164 IDEMVNA 170
+EMV +
Sbjct: 314 KEEMVTS 320
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 20 DSIIDME-EIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRA--EPPYKSVAAINC 75
D I+ ME E +P Y +++ C G+ +D + L+ + A EP Y + C
Sbjct: 610 DLILKMEREGVAPDVVTYNILIDGCGHMGY--IDRAFSTLKRMVGASCEPNYWTY----C 663
Query: 76 VIL-----------------GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
++L G N+ +LD +Q E + GL P + +Y++LI F K
Sbjct: 664 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVTTYSSLIAGFCK 722
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + +H+ G+ PN Y+LL+ + + ALS + M GF P E+
Sbjct: 723 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 782
Query: 179 LK 180
+
Sbjct: 783 YR 784
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD ++Y+ L++A K K+ EA + + + G+K +Y++L+D L A
Sbjct: 514 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 573
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM ++G PS T
Sbjct: 574 KRMYNEMTSSGHKPSATT 591
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A++ FE + + GL PD H+Y L A K + EA + +V GV + Y
Sbjct: 432 DFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYY 487
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D + A ++I+ M++ G P T
Sbjct: 488 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 521
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN+L+Y K KK +A + + G+ PN ++Y+ L+ D A
Sbjct: 377 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 436
Query: 161 LSVIDEMVNAGFAPSKE 177
+ + M G P +
Sbjct: 437 FRLFEMMEQNGLKPDEH 453
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDGANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 295 KGDLKQAHDLIDEMSMK 311
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDGANELFDEMLVKGLVPNGVT 249
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G APS T
Sbjct: 382 GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVT 424
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W +RA++ F + S P++H+Y A+I + K +K A +FE + G+ P
Sbjct: 360 CKKGWT-ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVP 418
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
N +Y+ L+D H + A +++ M N GF P+ T V C R EE+
Sbjct: 419 NTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 474
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDIH Y LI AF + ++ ++F+ ++ LG+ P +Y+ ++ + + A
Sbjct: 520 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 579
Query: 161 LSVIDEMVNAGFAP 174
+ +M + G AP
Sbjct: 580 VKFFQKMSDHGCAP 593
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ NR ALSV EM
Sbjct: 118 STLLTMYVENRKFLEALSVFAEM 140
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A+ F+ + S G PD+ SY +LI FG+ ++ A VF+ + KPN +SY+ L+
Sbjct: 261 AFSVFDEMKRS-GFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALM 319
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
DA+ +N A+ ++ EM G P+ ++ + C R + + D V + A+ I
Sbjct: 320 DAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH 379
Query: 209 MNT 211
+NT
Sbjct: 380 LNT 382
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N VI + +A + F ++ PD+ ++ ++
Sbjct: 157 YFELMKGTNIRP---DTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSI 213
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + + VF +++ G+KPN +SY+ L+ A+ ++ K A SV DEM +GF
Sbjct: 214 IHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGF 273
Query: 173 AP 174
P
Sbjct: 274 CP 275
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +YNALI A G+ + A+ + E ++ + P+ +++ L++A + + + AL V
Sbjct: 63 PDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRV 122
Query: 164 IDEMVNAGFAP 174
+M + G P
Sbjct: 123 CKKMTDNGVGP 133
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 46/104 (44%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
I ++ Q F+ + + YN +I + + +A +F + KP+
Sbjct: 7 IGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVE 66
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+Y+ L++AH + A +++++M+ A PS+ T + C
Sbjct: 67 TYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINAC 110
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C+ + D +A + SF L + + N L+ GK KT ++F V+LG
Sbjct: 566 ACSILRDWRKATDLINLMEPSFHLV-SLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSS 624
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
N +YS+L+ L+ + + V+ M +AG PS
Sbjct: 625 VNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPS 661
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD +Y+ +I GK A R+F +V G PN +++++++ H R+ + A
Sbjct: 459 GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Query: 161 LSVIDEMVNAGFAPSKET 178
L + +M NAGF P K T
Sbjct: 519 LKLYRDMQNAGFQPDKVT 536
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ E +++ + +V G KPN ++Y+ L+ ++ K A
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 414 MNVFNQMQEAGCEPDRVT 431
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G +P+ ++Y L+D H A
Sbjct: 389 GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA 448
Query: 161 LSVIDEMVNAGFAP 174
+ + M AG +P
Sbjct: 449 MDMYQRMQEAGLSP 462
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D+A+Q ++A+ + GL P++ + N+L+ F ++ + EA + + +++LG+ P+ +Y
Sbjct: 584 NVDKAWQWYQAMLQA-GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTY 642
Query: 145 SLLV 148
+LL+
Sbjct: 643 TLLL 646
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N +I G +++ A + + + + G PD +YN L+ F K K A
Sbjct: 439 PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESA 497
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S F+ +V G+ PN +SY+ L+D H + ALS++ M G P+ E+ V
Sbjct: 498 SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI K K EA + + + P+ +Y+ L+ H NR+ A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V D MV G P+ T + C +E+ D +E + +K
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ L+PD+ +Y +LI + + A VF+ +V G PN+++YS L++
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285
Query: 159 AALSVIDEMVNAGFAPS 175
AL +++EM+ G P+
Sbjct: 286 EALDMLEEMIEKGIEPT 302
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P++ SYNA+I K + EA ++ + +V G+ PN ++Y+ L+D N +
Sbjct: 542 MGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQF 601
Query: 160 ALSVIDEM 167
A + +M
Sbjct: 602 AFKIFHDM 609
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++Y++LIY + K EA R+ E +G +P +YS LV A +
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAERMSE----IGCEPTLDTYSTLVSGLCRKGRFYEAEQL 671
Query: 164 IDEMVNAGFAPSKE 177
+ +M GF P +E
Sbjct: 672 VKDMKERGFCPDRE 685
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ SY ALI K K A + + + +G PN SY+ +++ A
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 161 LSVIDEMVNAGFAPS 175
+ D+MV G P+
Sbjct: 568 EKICDKMVEQGLLPN 582
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 20 DSIIDME-EIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRA--EPPYKSVAAINC 75
D I+ ME E +P Y +++ C G+ +D + L+ + A EP Y + C
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGY--IDRAFSTLKRMVGASCEPNYWTY----C 778
Query: 76 VIL-----------------GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
++L G N+ +LD +Q E + GL P + +Y++LI F K
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVTTYSSLIAGFCK 837
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + +H+ G+ PN Y+LL+ + + ALS + M GF P E+
Sbjct: 838 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 897
Query: 179 LK 180
+
Sbjct: 898 YR 899
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD ++Y+ L++A K K+ EA + + + G+K +Y++L+D L A
Sbjct: 629 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 688
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM ++G PS T
Sbjct: 689 KRMYNEMTSSGHKPSATT 706
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A++ FE + + GL PD H+Y L A K + EA + +V GV + Y
Sbjct: 547 DFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYY 602
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D + A ++I+ M++ G P T
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN+L+Y K KK +A + + G+ PN ++Y+ L+ D A
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551
Query: 161 LSVIDEMVNAGFAPSKE 177
+ + M G P +
Sbjct: 552 FRLFEMMEQNGLKPDEH 568
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 26 EEIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E SP Y V+ AC+R G +E L ++ ++ R E V N ++ CA+
Sbjct: 197 QERVSPSILTYNTVINACARGGLDWEGLLGLFAEM----RHEGIQPDVITYNTLLGACAH 252
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A F + S G+ PDI++Y+ L+ FGKL + + S + + G P+
Sbjct: 253 RGLGDEAEMVFRTMNES-GIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDIT 311
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
SY++L++A+ K A+ V +M AG
Sbjct: 312 SYNVLLEAYAELGSIKEAMGVFRQMQAAG 340
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 59 NLSRAEPPYKSVAAIN---CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+++R P+K+ ++N V A D R+ + F+ + P+ H + +I
Sbjct: 84 SIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITL 143
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ + VF+ + S GV SY+ +++A+ N A+L +++ M +PS
Sbjct: 144 LGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPS 203
Query: 176 KETLKKVRRRCVR 188
T V C R
Sbjct: 204 ILTYNTVINACAR 216
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G PDI SYN L+ A+ +L EA VF + + G NA +YS+L++ +
Sbjct: 305 GNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ T VGS+ P + +YN+LI+AF + EA + + G+K + S++ +++
Sbjct: 473 FNTMNEVGSN----PTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIE 528
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
A + A+ EM A P++ TL+ V
Sbjct: 529 AFRQGGQYEEAVKSYVEMEKANCEPNELTLEAV 561
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD+++YN LI + + EA+ VFE + + G P+ ++Y+ L+D + +R +
Sbjct: 284 SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPR 343
Query: 159 AALSVIDEMVNAGFAPS 175
A+ V+ EM +GFAPS
Sbjct: 344 EAMEVLKEMEASGFAPS 360
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C + A + FE + ++ G +PD +YNAL+ +GK ++ EA V + +
Sbjct: 295 NTLISSCRRGSLYEEAAEVFEEMKAA-GFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G P+ ++Y+ L+ A+ + A+ + +MV G P
Sbjct: 354 ASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKP 394
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI S+N +I+A+ + + EASR+F + G+ P+ ++Y+ + ++ ++ A
Sbjct: 706 GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V+ M+ P++ T
Sbjct: 766 IDVVKYMIKNECKPNQNT 783
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP + +YN+L+Y + + + ++ + +++ G+KP+ +S++ ++ A+ N K A
Sbjct: 671 GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730
Query: 161 LSVIDEMVNAGFAP 174
+ EM + G AP
Sbjct: 731 SRIFAEMKDFGLAP 744
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P I +YN+LI A+ + EA + +V G+KP+ +Y+ L+ A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415
Query: 161 LSVIDEMVNAGFAPS 175
+ V +EM AG P+
Sbjct: 416 MKVFEEMRVAGCQPN 430
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + FE + + G P+I ++NALI G E +VFE + P+ ++++
Sbjct: 413 DYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNT 471
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
L+ N V EM AGF P ++T
Sbjct: 472 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 504
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N VI + A + F A FGL PD+ +YN I ++ EA V
Sbjct: 711 IISFNTVIFAYCRNGRMKEASRIF-AEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769
Query: 130 EHLVSLGVKPNAMSYSLLVD--AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
++++ KPN +Y+ L+D L RD+ A S I + N + +K+ +++ R
Sbjct: 770 KYMIKNECKPNQNTYNSLIDWFCKLNRRDE--ANSFISNLRNLDPSVTKDEERRLLER 825
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF-EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P + +YN ++ +GK+ + + + + + + S GV P+ +Y+ L+ + +
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V +EM AGF+P K T
Sbjct: 310 AAEVFEEMKAAGFSPDKVT 328
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y L+ F K K A +VFE + G +PN +++ L+ H +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450
Query: 161 LSVIDEM 167
+ V +E+
Sbjct: 451 MKVFEEI 457
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI ++N L+ FG+ E S VF+ + G P +++ L+ A+ A+++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
M++AG P T V R E +++V A K
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKA 159
G+ DI++Y +LI A+ + EA VF+ L G +P ++Y+++++ +
Sbjct: 215 GVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSK 274
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++D M ++G AP T + C R
Sbjct: 275 IAGLVDSMKSSGVAPDLYTYNTLISSCRR 303
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ +YNA++ A + ++ +V + KPN ++Y L+ A+ ++ +
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++ +E+ + P LK +
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTL 612
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 20 DSIIDME-EIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRA--EPPYKSVAAINC 75
D I+ ME E +P Y +++ C G+ +D + L+ + A EP Y + C
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGY--IDRAFSTLKRMVGASCEPNYWTY----C 778
Query: 76 VIL-----------------GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
++L G N+ +LD +Q E + GL P + +Y++LI F K
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM-VKHGLNPTVTTYSSLIAGFCK 837
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA + +H+ G+ PN Y+LL+ + + ALS + M GF P E+
Sbjct: 838 AGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLES 897
Query: 179 LK 180
+
Sbjct: 898 YR 899
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD ++Y+ L++A K K+ EA + + + G+K +Y++L+D L A
Sbjct: 629 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 688
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM ++G PS T
Sbjct: 689 KRMYNEMTSSGHKPSATT 706
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A++ FE + + GL PD H+Y L A K + EA + +V GV + Y
Sbjct: 547 DFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYY 602
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D + A ++I+ M++ G P T
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN+L+Y K KK +A + + G+ PN ++Y+ L+ D A
Sbjct: 492 GCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 551
Query: 161 LSVIDEMVNAGFAPSKE 177
+ + M G P +
Sbjct: 552 FRLFEMMEQNGLKPDEH 568
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + ++ G N +D A + E + +S +PD+++Y +L+ F K+ + EA RV
Sbjct: 511 VVTFSTLVEGYCNAGLVDDAERLLEEMVAS-DCSPDVYTYTSLVDGFCKVGRMVEARRVL 569
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + G +PN ++Y+ L+DA A +++EMV G P+
Sbjct: 570 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPN 615
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + + RAY + + S GL P++ +Y+ +I+ F + K A ++F +V
Sbjct: 165 NVLINGFCKVHKVHRAYLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 223
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G PN ++Y+ L+ N A ++DEM G P K
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 266
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A Q E + TP++ +Y++LI K + +A VF+ ++ G++PN ++Y+
Sbjct: 352 LQEAQQVLETM-EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYN 410
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ +AL +++EM G P
Sbjct: 411 SLIHGFCMTNGVDSALLLMEEMTATGCLP 439
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP V A + +I G LD A + FE + + PD+ ++ AL+ K + E
Sbjct: 298 PP--DVVAYSTLIAGLCKAGRLDEACKLFEKMREN-SCEPDVVTFTALMDGLCKGDRLQE 354
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A +V E + PN ++YS L+D + A V M+ G P+
Sbjct: 355 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y ALI AF + K A R+ E +V GV+PN ++Y L+ D + A
Sbjct: 576 GCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEA 635
Query: 161 LSVIDEM 167
+++ +
Sbjct: 636 RKILERL 642
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G +D A E + ++ G PDI +YN LI K + EA+R+
Sbjct: 405 NVVTYNSLIHGFCMTNGVDSALLLMEEM-TATGCLPDIITYNTLIDGLCKTGRAPEANRL 463
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F + + P+ ++YS L+ A ++ D+M+ P
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLP 509
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A + F G ++++YN L A + ++ E + ++ G+ PN +Y
Sbjct: 3 DPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTY 62
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++++ + D A +++EM +G P
Sbjct: 63 AVVIQGLCKSGDLDKACELLEEMRESGPVP 92
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI F K+ K A + + + G+ PN ++YS ++ A
Sbjct: 156 GTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTA 215
Query: 161 LSVIDEMVNAGFAPS 175
+ +MV G P+
Sbjct: 216 YKLFRQMVENGCMPN 230
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G DLD+A + E + S G PD YN +I+A K + T ++ ++ S+
Sbjct: 65 VIQGLCKSGDLDKACELLEEMRES-GPVPDAAIYNFVIHALCKARNT---AKALDYFRSM 120
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ N +++++++D A + +M G P++ T
Sbjct: 121 ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWT 163
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 67 YKSVAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
Y + ++C IL G I DLD A + + + G+TPD+ +Y ++ A+
Sbjct: 188 YITPNLVSCNILLKGLVGIGDLDAALKVLDEM-PGLGITPDVVTYTTVLSAYCGKGDIEG 246
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A ++F+ +++ G +P+ Y++L+D + + + A ++DEM A P++ T V
Sbjct: 247 AQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIE 306
Query: 185 RCVRE 189
C +E
Sbjct: 307 ACCKE 311
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI + ++ EA RV++ +V G +PNAM+Y L+
Sbjct: 397 GFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEG 456
Query: 161 LSVIDEMVNAGFAPS 175
+V +EMV+ G PS
Sbjct: 457 ATVFEEMVSRGCKPS 471
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + F+ + +S G PD+ Y LI + + +A+R+ + + + V+PN ++Y
Sbjct: 243 DIEGAQKLFDDIIAS-GRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTY 301
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S++++A A + EM+ AG+ P KV
Sbjct: 302 SVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKV 339
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G P+ +Y ALI K K E + VFE +VS G KP+++ + +LVD+
Sbjct: 432 GYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDS 481
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+LQ A ++E E A P Y +V+ K + +++ F E L
Sbjct: 277 GNLQDAARIMDEMEAAR----------VQPNEVTYSVVIEACCKEEKPIEARDFMREMLG 326
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P ++ A +L C + + AYQ + + + PD + LIY K
Sbjct: 327 AGYVPDTALGAKVVDVL-CQD-GKSEEAYQLWRWMEKK-NVPPDNMVTSTLIYWLCKNGM 383
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA +F+ L G KP+ ++Y+ L+ N + + A V D+MV G+ P+ T
Sbjct: 384 VREARNLFDEL-ERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMT 439
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 99 SFGLTPDIHSYNALIYAF-GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SF P + S+NAL+++ + A+ L + PN +S ++L+ + D
Sbjct: 150 SFNSHPSVRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDL 209
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN----DRVEALAKKFDIRMNT 211
AAL V+DEM G P T V + D E D + A ++ D+ M T
Sbjct: 210 DAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYT 267
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N +I G +++ A + + + + G PD +YN L+ F K K A
Sbjct: 439 PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESA 497
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S F+ +V G+ PN +SY+ L+D H + ALS++ M G P+ E+ V
Sbjct: 498 SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI K K EA + + + P+ +Y+ L+ H NR+ A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V D MV G P+ T + C +E+ D +E + +K
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ L+PD+ +Y +LI + + A VF+ +V G PN+++YS L++
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285
Query: 159 AALSVIDEMVNAGFAPSKET 178
AL +++EM+ G P+ T
Sbjct: 286 EALDMLEEMIEKGIEPTVYT 305
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P++ SYNA+I K + EA ++ + +V G+ PN ++Y+ L+D N +
Sbjct: 542 MGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQF 601
Query: 160 ALSVIDEM 167
A + +M
Sbjct: 602 AFKIFHDM 609
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++Y++LIY + K EA + + + G+ P+ ++++ L+D + A +
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 675
Query: 164 IDEMVNAGFAPSKET----LKKVRRRCV 187
+ MV+ G P+ T LK +++ C+
Sbjct: 676 LRRMVDMGCKPNYRTYSVLLKGLQKECL 703
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ SY ALI K K A + + + +G PN SY+ +++ A
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 161 LSVIDEMVNAGFAPS 175
+ D+MV G P+
Sbjct: 568 EKICDKMVEQGLLPN 582
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 77 ILGCAN--IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
IL CA + L ++ + +G S G +PD H+YN L++ GK K A ++ H+
Sbjct: 264 ILMCAKYRLGKLHHFHRLLDEMGRS-GFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKE 322
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G P+ + ++ L+D + A DEM+ GF P
Sbjct: 323 IGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVP 362
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 88 RAYQTFEAVGSSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
R Y+ E V G PD +YN L+ A +L K R+ + + G P+ +Y
Sbjct: 238 REYKLIEWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTY 297
Query: 145 SLLVDAHLTNRDQK--AALSVIDEMVNAGFAPS 175
++L+ H+ + K AAL +++ M GF PS
Sbjct: 298 NILL--HVLGKGNKPIAALKLLNHMKEIGFDPS 328
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 25 MEEI-FSP-FTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEPPYKSVAAINCVILGCA 81
M+EI F P L+ SR G LD+ YF E + P V +I G
Sbjct: 320 MKEIGFDPSILHFTTLIDGLSRAG--NLDACNYFFDEMIKNGFVP--DVVCYTVMITGYI 375
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
+L++A + F+ + + G P++ +YN++I K EA + + + S G KPN
Sbjct: 376 VAGELEKAREIFDEMIAR-GQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNF 434
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ Y+ LV+ A VI EM G
Sbjct: 435 LVYNTLVNNLRNAGKLSEAREVIKEMAENG 464
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD+++YN LI + + EA+ VFE + + G P+ ++Y+ L+D + +R +
Sbjct: 284 SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPR 343
Query: 159 AALSVIDEMVNAGFAPS 175
A+ V+ EM +GFAPS
Sbjct: 344 EAMEVLKEMEASGFAPS 360
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI S+N +I+A+ + + EASR+F + G+ P+ ++Y+ + ++ ++ A
Sbjct: 706 GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEA 765
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V+ M+ G P++ T
Sbjct: 766 IDVVKYMIKNGCKPNQNT 783
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C + A + FE + ++ G +PD +YNAL+ +GK ++ EA V + +
Sbjct: 295 NTLISSCRRGSLYEEAAEVFEEMKAA-GFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ G P+ ++Y+ L+ A+ + A+ + +MV G P
Sbjct: 354 ASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKP 394
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP + +YN+L+Y + + + ++ + +++ G+KP+ +S++ ++ A+ N K A
Sbjct: 671 GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730
Query: 161 LSVIDEMVNAGFAP 174
+ EM + G AP
Sbjct: 731 SRIFAEMKDFGLAP 744
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N VI + A + F A FGL PD+ +YN I ++ EA V
Sbjct: 711 IISFNTVIFAYCRNGRMKEASRIF-AEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769
Query: 130 EHLVSLGVKPNAMSYSLLVD--AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
++++ G KPN +Y+ L+D L RD+ A S I + N + +K+ +++ R
Sbjct: 770 KYMIKNGCKPNQNTYNSLIDWFCKLNRRDE--ASSFISNLRNLDPSVTKDEERRLLER 825
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P I +YN+LI A+ + EA + +V G+KP+ +Y+ L+ A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415
Query: 161 LSVIDEMVNAGFAPS 175
+ V +EM AG P+
Sbjct: 416 MKVFEEMRVAGCQPN 430
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + FE + + G P+I ++NALI G E +VFE + P+ ++++
Sbjct: 413 DYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNT 471
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
L+ N V EM AGF P ++T
Sbjct: 472 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 504
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y L+ F K K A +VFE + G +PN +++ L+ H +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450
Query: 161 LSVIDEM 167
+ V +E+
Sbjct: 451 MKVFEEI 457
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF-EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P + +YN ++ +GK+ + + + + + + S GV P+ +Y+ L+ + +
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V +EM AGF+P K T
Sbjct: 310 AAEVFEEMKAAGFSPDKVT 328
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI ++N L+ FG+ E S VF+ + G P +++ L+ A+ A+++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
M++AG P T V R E +++V A K
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKA 159
G+ DI++Y +LI A+ + EA VF+ L G +P ++Y+++++ +
Sbjct: 215 GVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSK 274
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++D M ++G AP T + C R
Sbjct: 275 IAGLVDSMKSSGVAPDLYTYNTLISSCRR 303
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ +YNA++ A + ++ +V + KPN ++Y L+ A+ ++ +
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++ +E+ + P LK +
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTL 612
>gi|296424573|ref|XP_002841822.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638071|emb|CAZ86013.1| unnamed protein product [Tuber melanosporum]
Length = 1048
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
L+S LE+L +AEP + N ++ A + D +R T+ + + + D ++Y
Sbjct: 610 LESAGHLLESLVQAEPRRDTTVLWNELLSSYAVLCDPERLNMTYHRMREAM-VGFDQYTY 668
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
L++A + K A +V + L + G+KPN++ Y++++ AH+ N D + ++MVN
Sbjct: 669 AILMHALCLIGKVETAEQVLDSLGAEGIKPNSIHYAIIMVAHMRNMDLAQVWATFNKMVN 728
Query: 170 AGFAPSKET 178
G P+ T
Sbjct: 729 CGINPTFTT 737
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N+L++A+ + + E + F+ + G+ P+ SY++L++A+ +D L + EM+
Sbjct: 492 FNSLMFAYARRGELGEVVKCFDAIPKFGLVPDNYSYNILINAYAKAQDVDGVLRRVQEMI 551
Query: 169 NAGFAPSKET 178
A AP T
Sbjct: 552 AAELAPDTYT 561
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L R +P + + N ++ A +L + F+A+ FGL PD +SYN LI A+ K
Sbjct: 481 LERFDP--EELLPFNSLMFAYARRGELGEVVKCFDAI-PKFGLVPDNYSYNILINAYAKA 537
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ R + +++ + P+ +Y +L+ D + + V++G P++
Sbjct: 538 QDVDGVLRRVQEMIAAELAPDTYTYGVLMTLAADRGDVENTKRYFNLAVDSGVEPTE 594
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + + + N +I G ++ A+ F + + PD +YN +I F +
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM-VRPDAVTYNMIINGFSEQGN 592
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+A RVF+ + G++P+ +Y L++ H+T + K A + DEM++ GFAP
Sbjct: 593 MQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAP 645
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + + A Q F+ + L PD+ +YN+LI + +A+ +++ + +
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ PN ++YS+L+D+H + A +DEMV G P+ T +
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSI 513
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+ V+ ++ S A V + N +I G + ++ A + ++ + +
Sbjct: 238 CKHRRFDKAKEVFRTMDQCSVA----PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRY- 292
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ S++ LI F + + A + LG+ P+ + Y++++ AL
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352
Query: 162 SVIDEMVNAGFAP 174
V DEMV G P
Sbjct: 353 RVRDEMVGFGCLP 365
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG FG PD+ +YN L+ K + +A ++ + GV P+ +++ L+ +
Sbjct: 357 EMVG--FGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR 414
Query: 154 NRDQKAALSVIDEMVNAGFAP 174
+ + AL + D ++ P
Sbjct: 415 QGNFENALQLFDTLLRQRLRP 435
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
++ N +++++ K + A V + V P+ +++++L+DA D AA++++D
Sbjct: 158 YTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDS 217
Query: 167 MVNAGFAPSKETLKKV 182
M N G P T V
Sbjct: 218 MANRGLKPGIVTYNSV 233
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ ++ LI+ + + A ++F+ L+ ++P+ ++Y+ L+D D A
Sbjct: 397 GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKA 456
Query: 161 LSVIDEM 167
+ D+M
Sbjct: 457 NELWDDM 463
>gi|325096346|gb|EGC49656.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 1324
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + + + D R F++ + +G + N LIY + + ++A +
Sbjct: 550 SEEAYQIALTAFSRLGDFRRVTDLFKSYVNHYGQPRKLRLVNPLIYVNAAVGRVYQARKQ 609
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD+ ALS EM+ G P TL +
Sbjct: 610 LERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDSHTLGILMGMFA 669
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ + ES LA+ +DI++N
Sbjct: 670 KDGNVESVMDFLQLARGYDIQLN 692
>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Cucumis sativus]
Length = 1062
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N +I LD+A + F A SS GL+PD +Y LI +GK KT EAS +
Sbjct: 807 SIQTYNTMISVYGRGRKLDKAVEMFNAARSS-GLSPDEKAYTNLISCYGKAGKTHEASLL 865
Query: 129 FEHLVSLGVKPNAMSYSLLVDAH 151
F+ ++ GVKP +SY+++V+ +
Sbjct: 866 FKEMLEEGVKPGMVSYNIMVNVY 888
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D ++N I A + K ASR++EH+++LG+ P+ +Y+ ++ + R A
Sbjct: 768 GLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKA 827
Query: 161 LSVIDEMVNAGFAPSKE 177
+ + + ++G +P ++
Sbjct: 828 VEMFNAARSSGLSPDEK 844
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ P I +YN +I +G+ +K +A +F S G+ P+ +Y+ L+ +
Sbjct: 801 ALGIVPSIQTYNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTH 860
Query: 159 AALSVIDEMVNAGFAPS 175
A + EM+ G P
Sbjct: 861 EASLLFKEMLEEGVKPG 877
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
W + +F + G+ P I +N ++ + K + ++ +V +GV + +
Sbjct: 237 WGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFSDFT 296
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y++++++ + + A V +EM N GF P + T
Sbjct: 297 YTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVT 331
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
Y LI +GKL +A + FE + LG+ + SY + HL +R+ + AL +I+ M
Sbjct: 402 YGLLIRIYGKLGLYEDAHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELM 460
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP Y +++C K +T ++ E L P + + N ++ AN +
Sbjct: 839 LSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKP--GMVSYNIMVNVYANAGLHEE 896
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+A+ + PD +Y +LI A+ + K EA ++ + G+ Y LL+
Sbjct: 897 TENLLKAMEQD-AIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLL 955
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
A + A V DE+ AG +P
Sbjct: 956 SALAKAGMIRKAERVYDELQTAGLSP 981
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
+ LD ++ ++ R P V A VI G LD+AY F+A+ G +PD+
Sbjct: 188 QALDLLHIMADHKGRC--PL-DVVAYTTVINGLLREGQLDKAYSLFDAM-LDRGPSPDVV 243
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y+++I A K + +A++VF +V GV P+ + Y+ LV + ++ K A+ + +M
Sbjct: 244 TYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM 303
Query: 168 VNAGFAP 174
G P
Sbjct: 304 CRHGVEP 310
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P V + +I + +D+A Q F + + G+ PD Y +L++ + K EA
Sbjct: 238 PSPDVVTYSSIISALSKTQAMDKATQVFTRMVKN-GVMPDCIMYTSLVHGYCSSGKPKEA 296
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+F+ + GV+P+ ++Y+ L+D N A + D +V G P T
Sbjct: 297 IGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTT 349
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D +NA++ K + EA +F+ +V +G++PN +Y+ L+D + + A
Sbjct: 482 GICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEA 541
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ MV G PS T
Sbjct: 542 MKLLGVMVFNGVKPSDVT 559
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EA+G G+ PD+ +Y AL+ K K+ EA ++F+ LV G KP++ +Y L+
Sbjct: 295 EAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 354
Query: 149 DAHLTNRDQKAALSVIDEMVNAGF 172
+ T ++D M+ G
Sbjct: 355 HGYATEGALVEMHDLLDLMMKKGM 378
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P+ ++YN LI + K EA ++ +V GVKP+ ++Y+ +++ + N +
Sbjct: 516 IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIED 575
Query: 160 ALSVIDEMVNAGFAPS 175
L+++ EM G P
Sbjct: 576 GLTLLREMDGKGVNPG 591
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ H +N ++ A+ K K EA VF ++ G+ P+ ++Y ++D T A
Sbjct: 377 GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDA 436
Query: 161 LSVIDEMVNAGFAPS 175
LS + + + G AP+
Sbjct: 437 LSQFNSLKSEGLAPN 451
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 24 DMEEIFS--PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+ME+ F+ P + Y ++ C K + LD LE S V AI V G
Sbjct: 95 EMEKNFALVPEATTYTAIIKCYCK-MDRLDQARQLLEESSCCS---SDVIAITSVARGFC 150
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
+D AYQ + PDI ++N +I+ F K + EA + E LVS+G PNA
Sbjct: 151 KAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNA 210
Query: 142 MSYSLLVDAHLTNRDQKAALSV 163
++Y+ L+D + + AL +
Sbjct: 211 VTYTTLIDGFCKSGNLSEALQL 232
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLK 120
AEP +V N +I G + DR FE V + L D +Y L+ K
Sbjct: 243 AEP---NVVTFNALISG---LCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+T E SRVFE ++ G P+ ++Y+ LV AH + A VI MV G P T
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV +N +I G + LD+A + F + +F L P+ +Y A+I + K+ + +A ++
Sbjct: 69 SVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQL 128
Query: 129 FE 130
E
Sbjct: 129 LE 130
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +YN LI F EA +FE + + G++P+ +Y +++ H+T + K A
Sbjct: 257 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAF 316
Query: 162 SVIDEMVNAGFAPSKE 177
+ DEM+ GFAP +
Sbjct: 317 QLHDEMLQRGFAPDDK 332
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R PP + +I G LD+A Q F+ + + L PDI +YN LI +
Sbjct: 80 RGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGD 136
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A+ +++ + S + PN ++YS+L+D+H + A +DEM+N G P+ T
Sbjct: 137 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 196
Query: 182 V 182
+
Sbjct: 197 I 197
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG G PD+ +YN L+ K ++ +A + + GV P+ +++ L+ +
Sbjct: 41 EMVGC--GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCI 98
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD-EESND 196
AL + D M+N P T + R+ D +++ND
Sbjct: 99 EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 142
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FGL PD Y +I F + +A RV + +V G P+ ++Y+ L++ R
Sbjct: 10 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 69
Query: 160 ALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
A +++EM G P T + C+ +++ + FD +N R +I+
Sbjct: 70 AEGLLNEMRERGVPPDLCTFTTLIHGYCIE-------GKLDKALQLFDTMLNQRLRPDIV 122
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A +E + GL+PD +Y+ +I GK A R+F +V G PN ++Y+
Sbjct: 469 LDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 527
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L+ R+ + AL + +M NAGF P K T
Sbjct: 528 ILIALQAKARNYQTALELYRDMQNAGFKPDKVT 560
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI+++G+ EA VF + +G +P+ ++Y L+D H A
Sbjct: 413 GCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVA 472
Query: 161 LSVIDEMVNAGFAP 174
+S+ + M G +P
Sbjct: 473 MSMYERMQEVGLSP 486
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ ++ +++ E +V G +PN ++Y+ L+ ++ + A
Sbjct: 378 GFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREA 437
Query: 161 LSVIDEMVNAGFAPSKET 178
L+V ++M G P + T
Sbjct: 438 LNVFNQMQEMGCEPDRVT 455
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A++ + + + GL P++ + N+L+ AF ++ + +A + +++V+LG+ P+ +Y
Sbjct: 608 NVEKAWEWYHTMLRA-GLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTY 666
Query: 145 SLLV 148
+LL+
Sbjct: 667 TLLL 670
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DL+ A++ + + G PD+ S+N +I K K +A + E +
Sbjct: 232 NAIINGHCKENDLESAHRVMDEMVEK-GCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMP 290
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G P+ +SY ++ D K A S++DEM+ G+ P E++ K+ R +E + E
Sbjct: 291 RRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNME 350
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DRA+Q FE + SF + S N+L+ A K ++ + ++VF + + G P+A ++++
Sbjct: 35 DRAFQVFERI-PSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNI 92
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A D A V DEM G P+ T
Sbjct: 93 LIHAACLCGDLDAVWGVFDEMQKRGVKPNVVT 124
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 76 VILGCANIWDLDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I G + +L+ A++ E V S+ L + Y+ LI A K + E S + +
Sbjct: 164 LIKGFCGVGELNFAFKLKEEMVTSNVKLVSAV--YSTLISALFKHGRKEEVSDILREMGE 221
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G KP+ ++Y+ +++ H D ++A V+DEMV G P
Sbjct: 222 NGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKP 261
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V ++N ++ L++ Q F + S++G +PD ++N LI+A
Sbjct: 51 RTVKSVNSLLAALLKNRQLEKMTQVFVDI-SNYG-SPDACTFNILIHAACLCGDLDAVWG 108
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
VF+ + GVKPN +++ L+ N K AL + ++MV
Sbjct: 109 VFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMV 149
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL-GVKPNAMS 143
DLD + F+ + G+ P++ ++ LIY K EA R+ E +V + +KPNA
Sbjct: 102 DLDAVWGVFDEMQKR-GVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI 160
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNA 170
Y+ L+ + A + +EMV +
Sbjct: 161 YTTLIKGFCGVGELNFAFKLKEEMVTS 187
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC+ +D A+ + + S GLTP+I +YN+LIY K + A +F+ L +
Sbjct: 766 LIHGCSASGFVDVAFDLRDTM-LSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTK 824
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PNA++Y+ L+D H + A + M+ G P+
Sbjct: 825 GISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPT 864
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ CS GF V F L + + ++ N +I G +L RA F+ +
Sbjct: 766 LIHGCSASGFV---DVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLW 822
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G++P+ +YN LI K EA ++ + ++ G+ P +YS+L++ T
Sbjct: 823 TK-GISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYM 881
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ A+ ++D+M+ P+ T + + VR
Sbjct: 882 EEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 29 FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
FSP Y L+V C+ K E + V ++ + + + A VI G + +
Sbjct: 309 FSPNIVTYTLLVKGYCNEKNMEEAEGV---VQEIRKNKQLVVDEAVFGAVINGYCQMGRM 365
Query: 87 DRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ A + E V S L ++ YN +I + KL + EA + + +GV+P+ SY+
Sbjct: 366 EDAARLLNEMVDSR--LQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYN 423
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LVD + A + M+ GFA + T
Sbjct: 424 SLVDGYCKKGLMNKAFETYNTMLRNGFAATTLT 456
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K+ N VI G I + A + + + + PDI +Y L + K+ ASR
Sbjct: 522 KNTTTFNTVINGLCKIERMPEAEELVDKM-KQWRCPPDIITYRTLFSGYCKIGDMDRASR 580
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ L +LG P ++ L+ H + ++ EM N G +P+
Sbjct: 581 ILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPN 628
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G I D+DRA + + + G P I +N+LI K+ + + + + + G+
Sbjct: 568 GYCKIGDMDRASRILNEL-ENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLS 626
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
PN ++Y L+ D A ++ EM+ G P+
Sbjct: 627 PNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPN 663
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A++T+ + + G +YNAL+ F L +A R++ ++ G+ PN +S S
Sbjct: 435 MNKAFETYNTMLRN-GFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCS 493
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
L+D + + AL++ E + G A + T V
Sbjct: 494 TLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTV 530
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 41/70 (58%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ ++ +Y+A++ + ++ +T +A R+ + L G PN ++Y+LLV + ++
Sbjct: 270 TKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNM 329
Query: 158 KAALSVIDEM 167
+ A V+ E+
Sbjct: 330 EEAEGVVQEI 339
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL + ++N +I K+++ EA + + + P+ ++Y L + D A
Sbjct: 519 GLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRA 578
Query: 161 LSVIDEMVNAGFAPSKE 177
+++E+ N GFAP+ E
Sbjct: 579 SRILNELENLGFAPTIE 595
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ + N ++ A DL FE + + G PD + + A+ K+K A
Sbjct: 207 SMRSCNSILNRLAQTGDLGATVAVFEQMQRA-GALPDKFTVAIMAKAYCKVKGVVHALEF 265
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCV 187
E + +GV+ N ++Y +++ + A ++D + GF+P+ T V+ C
Sbjct: 266 VEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCN 325
Query: 188 REMDEESNDRVEALAK 203
+ EE+ V+ + K
Sbjct: 326 EKNMEEAEGVVQEIRK 341
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L + D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + V C + ++ QLE + Y A N +I+G + D AY
Sbjct: 303 YTSM--IGVLCKANRLDEAVELFEQLEQNRKVPCAY----AYNTMIMGYGSAGKFDEAYG 356
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
E + G P + +YN ++ GK ++ EA R+FE + V PN +Y++L+D
Sbjct: 357 LLERQKAK-GSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDML 414
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
AAL + D+M AG P+ T+ + R C + EE+ E + K
Sbjct: 415 CREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 468
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+ LD Y E +++ +V + +I G + +D AY E + GLTP++
Sbjct: 662 IDRLDEAYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNV 719
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+++N L+ A K ++ EA F+ + L PN ++YS+L++ R A E
Sbjct: 720 YTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQE 779
Query: 167 MVNAGFAPSKET 178
M G P+ T
Sbjct: 780 MQKLGLKPNTIT 791
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N VI G +++AYQ E + G P + +Y ++I K+ + EA +FE
Sbjct: 616 AYNAVIDGFCKSGKVNKAYQLLEEMKVK-GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S G+K N + YS L+D A +++E++ G P+
Sbjct: 675 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 718
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ +V +N +I L+ A FE + TP+ ++++LI GK + +A
Sbjct: 436 FPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV-CTPNAVTFSSLIDGLGKCGRVDDAY 494
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
++E ++ G P A+ Y+ L+ + ++ + EMV+ G +P TL C
Sbjct: 495 SLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL-TLINTYMDC 553
Query: 187 VREMDEESNDR 197
V + E R
Sbjct: 554 VFKAGETEKGR 564
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ + N +I K +K EA +FE + PNA+++S L+D A
Sbjct: 434 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDA 493
Query: 161 LSVIDEMVNAGFAPSKETLKKVRR---RCVREMD 191
S+ ++M++ G P + R +C R+ D
Sbjct: 494 YSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKED 527
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D Y LE +A+ SV A NC++ ++ A + FE + P++ +YN
Sbjct: 352 DEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRD--AVPNVPTYN 408
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
LI + K A + + + G+ PN ++ ++++D + + A S+ + M +
Sbjct: 409 ILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK 468
Query: 171 GFAPSKET 178
P+ T
Sbjct: 469 VCTPNAVT 476
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+I +YNALI K A ++F+ L G+ PN +SY++L+D + N + + A
Sbjct: 774 GLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREA 833
Query: 161 LSVIDEMVNAGFAPS 175
L + ++M+ G +PS
Sbjct: 834 LDLRNKMLKEGISPS 848
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FSP Y ++ D+ + E L R P ++ N +I G +LDR
Sbjct: 740 FSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAP--NIITYNALINGLCKSGNLDR 797
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F+ + GL P++ SYN LI + K T EA + ++ G+ P+ ++YS L+
Sbjct: 798 AQKLFDKLHLK-GLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALI 856
Query: 149 DAHLTNRDQKAALSVIDEM 167
D A +++DEM
Sbjct: 857 YGFCKQGDMGKATNLLDEM 875
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 15/183 (8%)
Query: 1 MGDLQRAFITLNE-FETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
MG+ RA N+ YG S + + F + ++ A + F + + F+ +
Sbjct: 477 MGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEA--EETFNRMKELGFEPDG 534
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
++ Y+++ I G + +++ A++ E + + P I YN+LI K
Sbjct: 535 VT-----YRTL------IDGYCKLGNVEEAFKVKEKMEKE-AILPSIELYNSLIGGLFKS 582
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKT E + + G+ PN ++Y L+ A + +M+ GFAP+
Sbjct: 583 KKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIIC 642
Query: 180 KKV 182
K+
Sbjct: 643 SKI 645
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F+ +G G P + S N L+ + + ++ A V++H+ LG+ P+ + S++V
Sbjct: 167 ALHVFDNMGK-LGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMV 225
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
+A+ + A+ + EM GF + T + CV D E + V L + I
Sbjct: 226 NAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGIL 285
Query: 209 MN 210
N
Sbjct: 286 RN 287
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D + T + SF L P+ YN I K K +A ++F L+ G P+ +Y
Sbjct: 689 DSQKIADTLDESSKSFSL-PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTY 747
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ + + A S+ DEM+ G AP+
Sbjct: 748 CTLIHGYSAAGNVNDAFSLRDEMLKRGLAPN 778
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I GC +I D++RA + +G G+ + + LI + + K EA +V
Sbjct: 252 NVVTYNSLIDGCVSIGDMERAEMVLKLMGER-GILRNKVTLTLLIKGYCRQCKLEEAEKV 310
Query: 129 FEHL-VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ S G+ + +Y +L+D + A+ + DEM+N G
Sbjct: 311 LREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGL 355
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA-CSRKGFETLDSVYFQLEN 59
+GD++RA + L ++ I +L L+ C + E + V ++E
Sbjct: 266 IGDMERAEMVL---------KLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREME- 315
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
R+E A +I G + +D A + + + + GL ++ NALI + K
Sbjct: 316 --RSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEM-LNVGLRMNLFICNALINGYCKN 372
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ EA R+ +V ++P + SYS L+D A+SV +EM+ G
Sbjct: 373 GQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGI 425
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + F ++ G +PD +Y LI+ + +A + + ++
Sbjct: 713 NIAIAGLCKSGKVDDAKKIFSSLLLR-GFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEML 771
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN ++Y+ L++ + + A + D++ G AP+
Sbjct: 772 KRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPN 813
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
+ LD ++ ++ R P V A VI G LD+AY F+A+ G +PD+
Sbjct: 189 QALDLLHIMADHKGRC--PL-DVVAYTTVINGLLREGQLDKAYSLFDAM-LDRGPSPDVV 244
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y+++I A K + +A++VF +V GV P+ + Y+ LV + ++ K A+ + +M
Sbjct: 245 TYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM 304
Query: 168 VNAGFAP 174
G P
Sbjct: 305 CRHGVEP 311
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P V + +I + +D+A Q F + + G+ PD Y +L++ + K EA
Sbjct: 239 PSPDVVTYSSIISALSKTQAMDKATQVFTRMVKN-GVMPDCIMYTSLVHGYCSSGKPKEA 297
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+F+ + GV+P+ ++Y+ L+D N A + D +V G P T
Sbjct: 298 IGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTT 350
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D +NA++ K + EA +F+ +V +G++PN +Y+ L+D + + A
Sbjct: 483 GICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEA 542
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ MV G PS T
Sbjct: 543 MKLLGVMVFNGVKPSDVT 560
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EA+G G+ PD+ +Y AL+ K K+ EA ++F+ LV G KP++ +Y L+
Sbjct: 296 EAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 355
Query: 149 DAHLTNRDQKAALSVIDEMVNAGF 172
+ T ++D M+ G
Sbjct: 356 HGYATEGALVEMHDLLDLMMKKGM 379
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P+ ++YN LI + K EA ++ +V GVKP+ ++Y+ +++ + N +
Sbjct: 517 IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIED 576
Query: 160 ALSVIDEMVNAGFAPS 175
L+++ EM G P
Sbjct: 577 GLTLLREMDGKGVNPG 592
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ H +N ++ A+ K K EA VF ++ G+ P+ ++Y ++D T A
Sbjct: 378 GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDA 437
Query: 161 LSVIDEMVNAGFAPS 175
LS + + + G AP+
Sbjct: 438 LSQFNSLKSEGLAPN 452
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C+ +LD A FE + +S PD+ +YNA++ G+ K EA +F+ LV
Sbjct: 297 NTLISACSQGSNLDDAVAVFEEMIAS-ECRPDLWTYNAMVSVHGRCGKAQEAELMFKELV 355
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G +P+A++Y+ L+ A D + V +E+V AGF
Sbjct: 356 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + LD A ++ + + G TPD +Y L+ + GK+ + EA +V E +
Sbjct: 402 NTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 460
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G+KP +++S L+ A+ + Q A D MV +G P +
Sbjct: 461 DAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDR 503
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 38 LVVACSRKG---FETLDSVYFQLENLSRAEPPYKSVAAINCV------ILGCANIWDLDR 88
LV A RK + T+ +Y ++ L A Y + AI C + ++ +DR
Sbjct: 389 LVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDR 448
Query: 89 ---AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
A + E + + GL P + +++ALI A+ K + +A R F+ +V GVKP+ ++Y
Sbjct: 449 ISEAGKVLEEMADA-GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYL 507
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+++D + + + + + M+ G+ P
Sbjct: 508 VMLDVFARSDETRKLMVLYRAMIKDGYKP 536
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ A D++R + E + + G D +YN +I+ +GK+ + A +++ +
Sbjct: 367 NSLLYAFAKEGDVERVERVCEELVKA-GFRKDGITYNTMIHMYGKMGRLDLALGLYDEMR 425
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFAPS 175
++G P+A++Y++LVD+ L D+ A V++EM +AG P+
Sbjct: 426 AIGCTPDAVTYTVLVDS-LGKMDRISEAGKVLEEMADAGLKPT 467
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 288 GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 347
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV-EALAK 203
+ E+V GF P T + +E D E +RV E L K
Sbjct: 348 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK 391
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K RV E LV G + + ++Y+ ++ + A
Sbjct: 358 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 417
Query: 161 LSVIDEMVNAGFAPSKET 178
L + DEM G P T
Sbjct: 418 LGLYDEMRAIGCTPDAVT 435
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I + + L+ ++G EA +V L S ++ + + YS ++DA+L NRD
Sbjct: 1057 GIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLG 1116
Query: 161 LSVIDEMVNAGFAPSKET 178
++ + EM G P +
Sbjct: 1117 ITKLLEMKRDGVEPDHQV 1134
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + SY L+ A GK K +A +FE + + G + N Y +++ + R+ A
Sbjct: 987 GLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKA 1046
Query: 161 LSVIDEMVNAGFAPSKETL 179
++ M G P+ T+
Sbjct: 1047 EHLLSAMKEDGIEPTIATM 1065
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 29 FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
+ P LY ++++ C K F ++ + ++E + +P + +N ++L +
Sbjct: 883 YLPNMHLYRIMISLLCHNKRFRDVELMVAEMEG-AGFKP---DLVVLNTLLLMYTGTGNF 938
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR + + ++ + GL PD +YN LI + + + E + + G+ P SY +
Sbjct: 939 DRTIEVYHSILEA-GLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKI 997
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGF 172
L+ A + + A + +EM G+
Sbjct: 998 LLAASGKAKLWEQADLLFEEMRTKGY 1023
>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A NC D D A + + + + PD+H+YN L+ F KL + +
Sbjct: 371 SAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEI 430
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-------- 180
++ + + G P+ SY+LL+ + K A EM+ G+ P K T +
Sbjct: 431 WDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQ 490
Query: 181 ----KVRRRCVREMDEES 194
K RR ++++EES
Sbjct: 491 SDMLKTWRRLKKKLEEES 508
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C+ +LD A FE + +S PD+ +YNA++ G+ K EA +F+ LV
Sbjct: 137 NTLISACSQGSNLDDAVAVFEEMIAS-ECRPDLWTYNAMVSVHGRCGKAQEAELMFKELV 195
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G +P+A++Y+ L+ A D + V +E+V AGF
Sbjct: 196 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + LD A ++ + + G TPD +Y L+ + GK+ + EA +V E +
Sbjct: 242 NTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMA 300
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G+KP +++S L+ A+ + Q A D MV +G P +
Sbjct: 301 DAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDR 343
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 38 LVVACSRKG---FETLDSVYFQLENLSRAEPPYKSVAAINCV------ILGCANIWDLDR 88
LV A RK + T+ +Y ++ L A Y + AI C + ++ +DR
Sbjct: 229 LVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDR 288
Query: 89 ---AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
A + E + + GL P + +++ALI A+ K + +A R F+ +V GVKP+ ++Y
Sbjct: 289 ISEAGKVLEEMADA-GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYL 347
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+++D + + + + + M+ G+ P
Sbjct: 348 VMLDVFARSDETRKLMVLYRAMIKDGYKP 376
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ A D++R + E + + G D +YN +I+ +GK+ + A +++ +
Sbjct: 207 NSLLYAFAKEGDVERVERVCEELVKA-GFRKDGITYNTMIHMYGKMGRLDLALGLYDEMR 265
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFAPS 175
++G P+A++Y++LVD+ L D+ A V++EM +AG P+
Sbjct: 266 AIGCTPDAVTYTVLVDS-LGKMDRISEAGKVLEEMADAGLKPT 307
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 128 GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 187
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV-EALAK 203
+ E+V GF P T + +E D E +RV E L K
Sbjct: 188 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK 231
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K RV E LV G + + ++Y+ ++ + A
Sbjct: 198 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 257
Query: 161 LSVIDEMVNAGFAPSKET 178
L + DEM G P T
Sbjct: 258 LGLYDEMRAIGCTPDAVT 275
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I + + L+ ++G EA +V L S ++ + + YS ++DA+L NRD
Sbjct: 897 GIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLG 956
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD------IRMNTENR 214
++ + EM G P + R + E+++D + L D IR+ TE R
Sbjct: 957 ITKLLEMKRDGVEPDHQVWTSFIRAA--SLCEQTDDAILLLKSLQDCGFDLPIRLLTE-R 1013
Query: 215 KNILFN 220
+ LF
Sbjct: 1014 TSSLFT 1019
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + SY L+ A GK K +A +FE + + G + N Y +++ + R+ A
Sbjct: 827 GLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKA 886
Query: 161 LSVIDEMVNAGFAPSKETL 179
++ M G P+ T+
Sbjct: 887 EHLLSAMKEDGIEPTIATM 905
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 29 FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
+ P LY ++++ C K F ++ + ++E + +P + +N ++L +
Sbjct: 723 YLPNMHLYRIMISLLCHNKRFRDVELMVAEMEG-AGFKP---DLVVLNTLLLMYTGTGNF 778
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR + + ++ + GL PD +YN LI + + + E + + G+ P SY +
Sbjct: 779 DRTIEVYHSILEA-GLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKI 837
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGF 172
L+ A + + A + +EM G+
Sbjct: 838 LLAASGKAKLWEQADLLFEEMRTKGY 863
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 174 SVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 232
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 293 KGDLKQAHDLIDEMSMK 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 155 DIRIAQSVFDAI-AKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTY 213
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 214 SVLINGLCKESKMDDANELFDEMLVKGLXPNGVT 247
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 321 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 379
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ +Y+++++ D ++ +M G APS
Sbjct: 380 GLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPS 419
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
F+ S+Y +KG + F L + EP V NC++ ++ +
Sbjct: 541 FNAMISMY------GKKGMMDKATDTFALLRSTGLEP---DVVTYNCLM----GMYGREG 587
Query: 89 AYQTFEAV---GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Y+ EA + G TPD+ SYN +I+++ K + A+R+F +VS G++P++ +Y+
Sbjct: 588 MYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYN 647
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
V ++ ALSV+ M G P + T + +
Sbjct: 648 TFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTL 684
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI ++N+L+ AFGK E +VF + G +P+ ++++L++A+ A
Sbjct: 358 GVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQA 417
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
LS+ D M+ AG P T + RE
Sbjct: 418 LSIYDGMLQAGCTPDLATFNTLLAALARE 446
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I CA+ + A + F + SS TPD +YNAL+ +GK EA+ V + +
Sbjct: 192 NTAITACASGSLCEEATELFTQMKSS-NCTPDRVTYNALLDVYGKAGWYNEAANVLKEME 250
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S G PN ++Y+ L+ A AA + D MV+ G P
Sbjct: 251 SAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEP 291
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TP+ ++NALI GK K E +FE + + GV+P+ ++++ L+ A N L
Sbjct: 325 TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLK 384
Query: 163 VIDEMVNAGFAPSKETL 179
V M AGF P K T
Sbjct: 385 VFRGMKKAGFEPDKATF 401
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 40/76 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD+ +Y +L+ A+ + K +A ++ + + PN+ +++ L+ H N++
Sbjct: 286 SKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFS 345
Query: 159 AALSVIDEMVNAGFAP 174
+ + ++M G P
Sbjct: 346 EMMVIFEDMQACGVEP 361
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G P+I +YN L+ AFG+ A+ + + +VS G++P+ +Y+ L+ A+ +
Sbjct: 251 SAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310
Query: 159 AALSVIDEMVNAGFAPSKETL 179
A+ + ++M + P+ T
Sbjct: 311 QAMEIYNQMRTSNCTPNSFTF 331
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKA 159
G D+++Y +LI A + +K EA FE + G +P+ ++Y++++D + R +
Sbjct: 112 GYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWEN 171
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRC 186
L + +EM G P + T C
Sbjct: 172 ILELFEEMKAQGIQPDEYTYNTAITAC 198
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L+ +EP S ++ ++ G ++A + F + S PD + ++ G+
Sbjct: 37 LTTSEPNLSSSELLS-IMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRE 95
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ SR+F+ L G + +Y+ L+ A NR K AL ++M AG PS
Sbjct: 96 SQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPS 151
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN I A EA+ +F + S P+ ++Y+ L+D + A
Sbjct: 183 GIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEA 242
Query: 161 LSVIDEMVNAGFAPS 175
+V+ EM +AG P+
Sbjct: 243 ANVLKEMESAGCLPN 257
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E ++ + P + + N VI + L A + F + S+ G+ PD +YN + +
Sbjct: 598 ECMAAGQTP--DLVSYNTVIFSYSKHGQLSSATRIFHEMVSN-GIQPDSFTYNTFVGCYV 654
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
EA V +H+ G KP+ ++Y LVDA+
Sbjct: 655 NGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAY 688
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++N LI A+G+ + +A +++ ++ G P+ +++ L+ A + A
Sbjct: 393 GFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHA 452
Query: 161 LSVIDEMVNAGFAPS 175
++DE+ + + P+
Sbjct: 453 ELILDELNRSSYKPN 467
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +YN LI F EA +FE + + G++P+ +Y +++ H+T + K A
Sbjct: 572 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAF 631
Query: 162 SVIDEMVNAGFAP 174
+ DEM+ GFAP
Sbjct: 632 QLHDEMLQRGFAP 644
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD+ E R PP + +I G LD+A Q F+ + + L PDI +Y
Sbjct: 383 LDAEGLLNEMRERGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPDIVTY 439
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N LI + +A+ +++ + S + PN ++YS+L+D+H + A +DEM+N
Sbjct: 440 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 499
Query: 170 AGFAPSKETLKKV 182
G P+ T +
Sbjct: 500 KGILPNIMTYNSI 512
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N V+ G D+A++ F+ + FG+ PD+ S+ LI F ++ + EA ++
Sbjct: 225 GIVTYNSVLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALKI 283
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + G+KP+ +S+S L+ A++ + EM G P
Sbjct: 284 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 329
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG G PD+ +YN L+ K ++ +A + + GV P+ +++ L+ +
Sbjct: 356 EMVGC--GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCI 413
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD-EESND 196
AL + D M+N P T + R+ D +++ND
Sbjct: 414 EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 457
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FGL PD Y +I F + +A RV + +V G P+ ++Y+ L++ R
Sbjct: 325 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 384
Query: 160 ALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
A +++EM G P T + C+ +++ + FD +N R +I+
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCI-------EGKLDKALQLFDTMLNQRLRPDIV 437
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P I +YN+++ + +A VF+ + GV P+ S+++L+ + +
Sbjct: 219 SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIE 278
Query: 159 AALSVIDEMVNAGFAP 174
AL + EM + G P
Sbjct: 279 EALKIYKEMRHRGIKP 294
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ ++ N +++ + K + + V + V P+ ++++++VDA D +AA++++
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214
Query: 165 DEMVNAGFAPSKETLKKVRRRCVR 188
D MV+ G P T V + R
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCR 238
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDGANGL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 295 KGDLKQAHDLIDEMSMK 311
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 249
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++V+ D ++ EM G APS T
Sbjct: 382 GLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 424
>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
Length = 457
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F +D+ Y + + A V N +I L R+ FE + + G+ PD+
Sbjct: 55 FVGIDAAYSVIHRMKEAGIS-PDVITYNSLIAAATKRCLLSRSLDLFEEMLRT-GIRPDV 112
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SYN+L++ F KL K EA+RVF+ ++ + P++ +++++++ N ALS+
Sbjct: 113 WSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRY 172
Query: 167 MVNAGFAPSKET-------LKKVR-----RRCVREMDEESN 195
+ GF P T L K R RR +RE+ E N
Sbjct: 173 LQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGN 213
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAV---GSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
S +N I + L++A EAV G GL PD+ +YN L+ A+ + A
Sbjct: 6 STKLLNICIASLCKVGQLEKA----EAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAA 61
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V + G+ P+ ++Y+ L+ A +L + +EM+ G P
Sbjct: 62 YSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRP 110
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI K +K A R+ L G P+A++Y+ ++ +R +
Sbjct: 177 GFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQG 236
Query: 161 LSVIDEMVNAGFA-------PSKETLKKVRRRCVREMDEESNDRVEALAK 203
+ EM + G+A L K R EE+ND +E +A+
Sbjct: 237 FEIFSEMKSKGYAFDAFSYCAVIAALTKTGRL------EEANDIMEQMAR 280
>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A NC D D A + + + + PD+H+YN L+ F KL + +
Sbjct: 371 SAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEI 430
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-------- 180
++ + + G P+ SY+LL+ + K A EM+ G+ P K T +
Sbjct: 431 WDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQ 490
Query: 181 ----KVRRRCVREMDEES 194
K RR ++++EES
Sbjct: 491 SDMLKTWRRLKKKLEEES 508
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ PD+ +YN +I K EA +F
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSEADLLF 550
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ G PN +Y++L+ AHL D + +I+E+ GF+ TL+
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR 601
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +++ALI F K K EA + + ++ G+ P+ ++Y+ L+D A
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372
Query: 162 SVIDEMVNAGFAPSKET 178
++D MV+ G P+ T
Sbjct: 373 HMLDLMVSKGCGPNIRT 389
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 22 IIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+ID +FS V K ++ + + Q+E A Y INC C
Sbjct: 72 LIDFSRLFS---------VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINC----CC 118
Query: 82 NIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
L A F A+G G PD +++ LI + EA + + +V +G KP
Sbjct: 119 RCRKLSLA---FSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + LV+ N A+ +ID MV GF P++ T
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G +D + F + S G+ D +YN LI F +L K A +
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
F+ +VS V+P+ +SY +L+D N + + AL + +++
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 101 GLTPDIHSYNALIYAFG--KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G PD+ ++ L+ F + ++A +F+++ ++G KPN ++Y+ ++ L
Sbjct: 614 GHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMIS 673
Query: 159 AALSVIDEMVNAGFAPSKET 178
V+D+M G P+ T
Sbjct: 674 QVPGVLDQMFERGCQPNAVT 693
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G DI Y LI F + + +++ ++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIK-GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ P+ +++S L+D + + A + EM+ G +P T
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVT 354
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 24 DMEEIFS--PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+ME+ F+ P + Y ++ C K + LD LE S V AI V G
Sbjct: 95 EMEKNFALVPEATTYTAIIKCYCK-MDRLDQARQLLEESSCCS---SDVIAITSVARGFC 150
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
+D AYQ + PDI ++N +I+ F K + EA + E LVS+G PNA
Sbjct: 151 KAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNA 210
Query: 142 MSYSLLVDAHLTNRDQKAALSV 163
++Y+ L+D + + AL +
Sbjct: 211 VTYTTLIDGFCKSGNLSEALQL 232
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLK 120
AEP +V N +I G + DR FE V + L D +Y L+ K
Sbjct: 243 AEP---NVVTFNALISG---LCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+T E SRVFE ++ G P+ ++Y+ LV AH + A VI MV G P T
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV +N +I G + LD+A + F + +F L P+ +Y A+I + K+ + +A ++
Sbjct: 69 SVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQL 128
Query: 129 FE 130
E
Sbjct: 129 LE 130
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C T S++ Q++ + + N +I G + LD ++ FE + G
Sbjct: 263 CKEGDMVTAKSLFHQMKQMGLT----PDIVTYNSLIDGYGKLGLLDESFCLFEEM-KDVG 317
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PD+ +YNALI F K ++ +A + + G+KPN ++YS L+DA + A+
Sbjct: 318 CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAI 377
Query: 162 SVIDEMVNAGFAPSKET 178
+ +M G +P++ T
Sbjct: 378 KFLLDMRRVGLSPNEFT 394
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A INC + +A+ + +S GL P++ +Y+ LI A K +A +
Sbjct: 327 ALINCF----CKYEQMPKAFHFLHEMKNS-GLKPNVVTYSTLIDALCKEHMLQQAIKFLL 381
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM--VNAGF 172
+ +G+ PN +Y+ L+DA+ AL + DEM V GF
Sbjct: 382 DMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGF 425
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ Y +I+ K E V + + G++ N++ Y++ +DA+ AL++
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNL 554
Query: 164 IDEMVNAG 171
+ EM + G
Sbjct: 555 LQEMCDLG 562
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 47/78 (60%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ PD+ +YN+L+Y + + EA ++F+ +++ G KP+ SYS+L++ + +
Sbjct: 212 TEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRI 271
Query: 158 KAALSVIDEMVNAGFAPS 175
A + +EM++ G P+
Sbjct: 272 DEAKQLFNEMIHQGSTPN 289
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +A++ F A+ S++ L P++ YN L+ A K +A +F L +G++PN Y+
Sbjct: 341 LGKAFRLFRAMQSTY-LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYT 399
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+++ AL M + G P + + + R ++ DE
Sbjct: 400 TIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDE 446
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P I +Y +LI + EAS + + SL + PN +++++LVD AA
Sbjct: 146 ISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAE 205
Query: 162 SVIDEMVNAGFAP 174
V+ M G P
Sbjct: 206 GVLKTMTEMGVEP 218
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ Y +I K EA F ++ G P+ SY++++ L ++D+ A
Sbjct: 390 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRA 449
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +I EM + GF T
Sbjct: 450 VHLIGEMRDRGFITDAGT 467
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
A G GL P I ++ LI GK+ K +A +F+ +V+ G +P+ +Y+ +++
Sbjct: 34 AKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKI 93
Query: 155 RDQKAALSVIDEMVNAG 171
+ A + +M AG
Sbjct: 94 GETALAAGLFKKMEEAG 110
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + L A F+ + ++ G P++++Y L+ F K +A R+F +
Sbjct: 294 NTLIHGLCQLGRLREAQDLFKNMHTN-GNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQ 352
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE--MD 191
S +KPN + Y++LV+A + + K A + E+ G P+ + + +E +D
Sbjct: 353 STYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLD 412
Query: 192 E 192
E
Sbjct: 413 E 413
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G PD+ SY+ LI + K K+ EA ++F ++ G PN +SY+ L+
Sbjct: 250 GCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHG 299
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S + P++ ++N L+ F K K A V + + +GV+P+ ++Y+ L+ + +
Sbjct: 177 TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEV 236
Query: 158 KAALSVIDEMVNAGFAP 174
A + D M+ G P
Sbjct: 237 VEARKLFDVMITKGCKP 253
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A Q F + G TP+ SYN LI+ +L + EA +F+++ + G PN +Y+
Sbjct: 271 IDEAKQLFNEMIHQ-GSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYA 329
Query: 146 LLVDA 150
+L+D
Sbjct: 330 ILLDG 334
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 172 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 230
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + M++ P
Sbjct: 231 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLP 276
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 153 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 211
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 212 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 245
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 319 LIDGCCKEGDLDTAFEHRKRMIQENIXLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 377
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN +Y+++++ D ++ EM G PS T
Sbjct: 378 GLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 420
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D A
Sbjct: 274 LLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAF 333
Query: 162 SVIDEMVN 169
M+
Sbjct: 334 EHRKRMIQ 341
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-----NIWDLDRAYQTFEAVGSSF- 100
+ TL S Y +L+ AE +KS+A C A N++ ++ E +
Sbjct: 894 YTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMK 953
Query: 101 --GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G P + + + L+ ++GK T +A V E L +G+ P+A+ Y+ ++++HL N+D
Sbjct: 954 VDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYL 1013
Query: 159 AALSVIDEMVNAGFAPSKETL 179
+A+ + +M +A P+ T+
Sbjct: 1014 SAVIWLRKMTDACVRPTHVTI 1034
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+I +Y LI A+G+L+ +A VF+ + G KP+A +Y+++++ + + +
Sbjct: 886 GNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKI 945
Query: 161 LSVIDEMVNAGFAPSKETL 179
+I++M GF PS T+
Sbjct: 946 EEIIEQMKVDGFEPSLTTI 964
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ N ++ AFG+ K E S F+ L +G+ PN+ ++ ++ A N + + A
Sbjct: 711 GLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEA 770
Query: 161 LSVIDEMVNAGFAPSKETLK 180
S+ +M AGF+PS + K
Sbjct: 771 RSMYRQMKEAGFSPSIQVFK 790
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL DI YN +I + KL A+ VF+ + +G P+A +++ L+ + N+ + A
Sbjct: 816 GLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEA 875
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ EM+ G AP+ T
Sbjct: 876 QALLREMIKTGNAPNIST 893
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI A + +A +FE + G P+ +Y+ ++ + +AA
Sbjct: 191 GLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAA 250
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
S+ M GF P T V R+ E +R+ + +
Sbjct: 251 SSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 293
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
A+I ++GKLK A VF L G N +YS L+ A+ + + A +D MV A
Sbjct: 651 AIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAA 710
Query: 171 GFAPS 175
G P+
Sbjct: 711 GLQPN 715
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +++A+I A+ K +A + ++ GV+P+ ++YS+++D + + +
Sbjct: 369 PTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIIL 428
Query: 164 IDEMVNAGFAP 174
MV +G P
Sbjct: 429 YKAMVGSGLKP 439
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N + C DL A +G P+ SYN +I + + +A VF+
Sbjct: 162 AWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDE 221
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN ++Y+ ++D H+ D +A S+ D+MV G P+ T
Sbjct: 222 MTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAIT 268
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY +++ AF K K EA + + + V PNA Y+ ++DA++ + A
Sbjct: 471 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 530
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALA 202
++++M + G +PS T ++ C + E+ + + +L+
Sbjct: 531 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLS 573
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G+ + + V + G+KPN +SY +V+A N A
Sbjct: 436 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 495
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M + P+ + +
Sbjct: 496 VAILDDMFHKDVLPNAQVYNAI 517
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +L+ A+ TF + S + PD +YNALI K ++ A + +
Sbjct: 375 NTLINGYCQTGELEGAFSTFGQMKSRH-IKPDHITYNALINGLCKAERITNAQDLLMEMQ 433
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV P +++ L+DA+ + V+ EM G P+
Sbjct: 434 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 475
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +YN L+ + + E S + + + S + P+ +YS+L D N D KA
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 320
Query: 161 LSVIDEMVNAG 171
LS+ + + G
Sbjct: 321 LSLFGKSLKNG 331
>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Vitis vinifera]
Length = 457
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F +D+ Y + + A V N +I L R+ FE + + G+ PD+
Sbjct: 55 FVGIDAAYSVIHRMKEAGIS-PDVITYNSLIAAATKRCLLSRSLDLFEEMLRT-GIRPDV 112
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SYN+L++ F KL K EA+RVF+ ++ + P++ +++++++ N ALS+
Sbjct: 113 WSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRY 172
Query: 167 MVNAGFAPSKET-------LKKVR-----RRCVREMDEESN 195
+ GF P T L K R RR +RE+ E N
Sbjct: 173 LQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGN 213
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAV---GSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
S +N I + L++A EAV G GL PD+ +YN L+ A+ + A
Sbjct: 6 STKLLNICIASLCKVGQLEKA----EAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAA 61
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V + G+ P+ ++Y+ L+ A +L + +EM+ G P
Sbjct: 62 YSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRP 110
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI K +K A R+ L G P+A++Y+ ++ +R +
Sbjct: 177 GFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQG 236
Query: 161 LSVIDEMVNAGFA-------PSKETLKKVRRRCVREMDEESNDRVEALAK 203
+ EM + G+A L K R EE+ND +E +A+
Sbjct: 237 FEIFSEMKSKGYAFDAFSYCAVIAALTKTGRL------EEANDIMEQMAR 280
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N+ L A + +E + G P+ H YNALI F ++ +T +A R++ +
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKD-GCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADN 503
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
G P ++Y+ L+D + A SV EMV GF P T + R
Sbjct: 504 GCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIR 552
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
C + LD L+ + R+ +P V N ++ GC + ++ + ++ +
Sbjct: 201 CGLAKQDRLDHALDLLDEMPRSGVQP---DVVCYNALLGGCFKAGEFEKVMRVWDKLVKD 257
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P++ +YN ++ K + E V+E +V+ ++P+ ++Y +L+ + D
Sbjct: 258 PGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDG 317
Query: 160 ALSVIDEMVNAGF 172
A V E++ G
Sbjct: 318 AARVYSEIIKTGL 330
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + + + + G +P + +YN LI K +K EAS V +V
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADN-GCSPTVITYNTLIDGLCKAEKYQEASSVAREMV 536
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G P+ +Y L+ +++ ALS+ +++ G
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGL 575
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-----VKPNA 141
D A F A+ S G P I S+NAL+ AF + ++ +A F L S G + PN
Sbjct: 100 DAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNL 158
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y++++ + D A+++ D + AP
Sbjct: 159 QTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAP 191
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N+ L A + +E + G P+ H YNALI F ++ +T +A R++ +
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKD-GCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADN 503
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
G P ++Y+ L+D + A SV EMV GF P T + R
Sbjct: 504 GCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIR 552
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETL-------DSVYFQLENL-----SRAEPPYKSVA 71
D++ + F SL VA R + TL D + L+ L SR +P V
Sbjct: 173 DLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQP---DVV 229
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
N ++ GC + ++ + ++ + G P++ +YN ++ K + E V+E
Sbjct: 230 CYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWER 289
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+V+ ++P+ ++Y +L+ + D A V E++ G
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-----VKPNA 141
D A F A+ S G P I S+NAL+ AF + ++ +A F L S G + PN
Sbjct: 100 DAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNL 158
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+Y++++ + D A+++ D + AP + T
Sbjct: 159 QTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRIT 195
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + + + + G +P + +YN LI K +K EAS V +V
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADN-GCSPTVITYNTLIDGLCKAEKYQEASSVAREMV 536
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G P+ +Y L+ +++ ALS+ +++ G
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGL 575
>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Vitis vinifera]
Length = 580
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LENL EP N VI G DL A + + SFG+ P++ +YNALI+A
Sbjct: 406 LENLMVPEP-----LIWNVVIDGHGRHGDLSNALSIRDQM-VSFGIPPNVFTYNALIHAQ 459
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
K +A + + ++ G+ P+ ++Y+LL+ A AL + DEM+ G+ P
Sbjct: 460 IKGGNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDI 519
Query: 177 ETLKK-VRRRCVREMDEESNDRVEALAK 203
T + +R C+R E+ + + L +
Sbjct: 520 ITYTELIRGFCIRGHVMEAEELLAKLQR 547
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 39/170 (22%)
Query: 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
C +KG + + ++ E L R V A N +I G I D++ AY+ F +
Sbjct: 283 GCLKKG-DMVQALVHWDEMLQRGTQ--IDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKR- 338
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL------------- 147
GL PDI +YN LI F K+ EA + + +G P+ +SY ++
Sbjct: 339 GLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRA 398
Query: 148 ----------------------VDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+D H + D ALS+ D+MV+ G P+
Sbjct: 399 NQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPN 448
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ ++N L+ K +A + ++ +G PN +++ + + N + A
Sbjct: 161 GVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKA 220
Query: 161 LSVIDEMVNAGFAPSKET 178
L + M N+G P+K T
Sbjct: 221 LYLFSTMANSGIGPNKVT 238
>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rotundifolia]
Length = 440
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L + D +A F +
Sbjct: 22 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 78
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 79 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 137
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 138 LEALSVFSEM 147
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPDI +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+RA+ + +V N +I G ++ A ++ + FG P + +Y+ LI +
Sbjct: 56 ARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDH 115
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ + ++ E + G PNA++Y+ LV+A L K A S++++M G P T
Sbjct: 116 EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFG 175
Query: 181 KVRRRCVREMDEESNDRV 198
+ + +E + E+ RV
Sbjct: 176 LIIKGLCKEGEIEAAFRV 193
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y+ LI K+ K EA ++ +V LG + N ++YS +VD L + A
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 297
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V+ +M +AG P T
Sbjct: 298 VVVLRQMRDAGCLPDAVT 315
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD+ ++N+++ K ++ +A VF+ + G +PN ++YS L+D A
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 262
Query: 161 LSVIDEMVNAG 171
L ++ +MV G
Sbjct: 263 LQLLAKMVELG 273
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y ALI GK ++ EA +FE + G P ++Y+ ++D + AL++
Sbjct: 28 PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 87
Query: 164 IDEM-VNAGFAPSKET 178
D+M ++ GF P+ T
Sbjct: 88 YDDMAIHFGFRPTVVT 103
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L R P +V + +I G + + +D A Q + G + +Y+ ++ K+
Sbjct: 235 LERGCRP--NVVTYSTLIDGLSKMAKMDEALQLLAKM-VELGCRANTVTYSTVVDGLLKV 291
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +A V + G P+A++Y+ L+D + + A+ ++ EM+ AGF PS T
Sbjct: 292 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 350
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN LI F K ++ EA + ++ G P+ ++Y+ L + A
Sbjct: 308 GCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEA 367
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ ++D M G AP+ T +
Sbjct: 368 VEILDYMAARGCAPNAITYSSI 389
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF-GK 118
L R P ++ + N +I G L +AY FE + L PD++++NA ++ +
Sbjct: 354 LDRGCEP--NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR-RLCPDVYTFNAFLHGLCQR 410
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L + +FE +VS G PN SYS+L+D + AL + EMV+ G AP
Sbjct: 411 LDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAP 466
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + A VI G LD A+ E + G PD +YN I K ++ +
Sbjct: 2 PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRA-GCEPDYVTYNVFIDGLCKAERVDD 60
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ + + P ++Y+ LVD L A++V+++MV G +P+ +T
Sbjct: 61 AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKT 114
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q F+ G PD +Y ++I KL + E F + + G +P+A++Y+ L+
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
D + + A V +M+ +G S T
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVT 294
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDIHSY + I A K +A+ E + GV+PN +Y+ L+ + + A
Sbjct: 645 GLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKA 704
Query: 161 LSVIDEMVNAGFAPSK 176
L DEM +AG P K
Sbjct: 705 LICYDEMKSAGMIPDK 720
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P + SY LI + KL K +A ++ + G+K N +YS+++D ++ D A
Sbjct: 365 GLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANA 424
Query: 161 LSVIDEMVNAGFAP 174
SV ++M NAG P
Sbjct: 425 FSVFEDMSNAGIKP 438
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + S+ G+ PD +YN L+ AF K + A + + S
Sbjct: 411 IIDGYVQLGDTANAFSVFEDM-SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESG 469
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P +Y++++D + D + A + +M AGF PS T
Sbjct: 470 DCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAAT 512
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 57 LENLSRAE----PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
LE L+R E PP ++ +I G I DL A++T + + G P +YN +
Sbjct: 460 LELLARMESGDCPP--TLRTYTIIIDGFMKIGDLRMAFETVRDMKMA-GFRPSAATYNVI 516
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
++ + + A+ + + +V GV PN SY+ L++ + D A + + G
Sbjct: 517 MHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGL 576
Query: 173 APSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221
P + + C + +S + A + MN N ++N+
Sbjct: 577 KPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMN-----NYIYNI 620
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + L+ +GK A FE + + G++PN SY+ L+ A+ +D + A++
Sbjct: 190 PKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIAC 249
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDR 197
++EM G +P+ T + R D E+ +R
Sbjct: 250 VEEMEAEGVSPNAATYSVIISGYGRLGDVEAAER 283
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + C+I + + +D+A Q + G+ + +Y+ +I + +L T A V
Sbjct: 369 TVVSYGCLINLYSKLGKMDKALQISNEMEDQ-GIKHNRKTYSMIIDGYVQLGDTANAFSV 427
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
FE + + G+KP+ ++Y++L++A N AL ++ M + P+ T
Sbjct: 428 FEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRT 477
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D A FE++ ++ G+ P++HSY LI+A+ + A E + + GV PNA +Y
Sbjct: 207 DKHSARAAFESMRAA-GIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATY 265
Query: 145 SLLVDAHLTNRDQKAA 160
S+++ + D +AA
Sbjct: 266 SVIISGYGRLGDVEAA 281
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 157 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDGANGL 215
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 275
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 276 KGDLKQAHDLIDEMSMK 292
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 138 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 196
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 197 SVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 230
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 304 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 362
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++V+ D ++ EM G APS T
Sbjct: 363 GLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 405
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +LD A + F+ G PD+ +YNALI F K K EA R+
Sbjct: 45 VVTYNTLLHGFCKVGELDEALKIFDGA-VKRGFVPDVVTYNALINGFCKADKLDEAQRIL 103
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTN-RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ +VS + P+ ++Y+ LV+ N R +A + ++D+ GF+P+ T + R
Sbjct: 104 QRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK----GFSPNVITYSTLISGLCR 159
Query: 189 EM 190
E+
Sbjct: 160 EL 161
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ S+NA+I K K+ EA + + + G PNA+S++ L+ K A
Sbjct: 248 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 307
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM+ G P+ T
Sbjct: 308 MTTFKEMLKRGVKPTVVT 325
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ--- 157
G +P+ S+N LI + K +A F+ ++ GVKP ++Y++LVD R +
Sbjct: 283 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 342
Query: 158 KAALSVIDEMVNAGFAP 174
K A+++ D M+ G P
Sbjct: 343 KEAITLFDAMIEKGRVP 359
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ +YN L++ F K+ + EA ++F+ V G P+ ++Y+ L++ A
Sbjct: 40 GYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEA 99
Query: 161 LSVIDEMVNAGFAP 174
++ MV+ P
Sbjct: 100 QRILQRMVSENLVP 113
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C + + A + F +V G P++ +YN LI K + EA +F LV G++P
Sbjct: 158 CRELRGVSEALKLFGSVLKQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEP 216
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+A++Y++ +D + AL ++ +M G P
Sbjct: 217 DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 251
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y+ALI GK K +A R+ + + G PN +Y+ L+ A
Sbjct: 356 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEA 415
Query: 161 LSVIDEMVNAGFAPSKET 178
L + MV G P T
Sbjct: 416 LELFVAMVEKGCVPDTIT 433
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G LD A + A+ + G P++++YN+LI L+K EA +F
Sbjct: 361 VVTYSALIDGLGKAGKLDDARRLLGAM-EAKGCIPNVYTYNSLISGLCGLEKVDEALELF 419
Query: 130 EHLVSLGVKPNAMSYSLLVDA 150
+V G P+ ++Y ++ A
Sbjct: 420 VAMVEKGCVPDTITYGTIISA 440
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI GC +D A + F+ + S G PD+ ++N+L+ ++ EA +FE++
Sbjct: 114 VIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKA 173
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PN +SYS L+D A + +EMV P
Sbjct: 174 GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVP 212
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+T +A GS TPD+ +YN L+ K + EA +V+ P+ SY++++ A
Sbjct: 433 ETMKARGS----TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
+ A ++ EMV G P
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLP 512
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYA 115
E +SR PP S N +I L F+ + S F P++ +YN ++
Sbjct: 291 EMISRNHPP--SAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K K+ EA + + + G+ P+ ++YS LVD A +++EM G P
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFP 407
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 1 MGDLQRAFITLNEF--ETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLE 58
+G L RA L E E + DS D ++ A S+ G +D LE
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDAS-----------ILNALSKAG--KVDYALSHLE 433
Query: 59 NL-SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
+ +R P + N ++ G +D A TF A + TPD+ SY +I A
Sbjct: 434 TMKARGSTP--DLVTYNTLLDGLCKAGRIDEAI-TFLAKMVAAKCTPDVFSYTIIITALC 490
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ + A +F+ +V GV P+ + Y L+D N + AL ++
Sbjct: 491 RSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL 537
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+++GL+PD+ +Y+AL+ KL K A + E + GV P++ + DA + N
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT-----DASILNALS 420
Query: 158 KA-----ALSVIDEMVNAGFAP 174
KA ALS ++ M G P
Sbjct: 421 KAGKVDYALSHLETMKARGSTP 442
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A +TF+ + + G PDI SY +L+ A+G+ +A VF + KPN +SY+ L+
Sbjct: 384 ALETFKLLKQN-GFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALI 442
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
DA+ + K A+S++ EM G P ++ + C R + A AK I+
Sbjct: 443 DAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQ 502
Query: 209 MNT 211
+NT
Sbjct: 503 LNT 505
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNAL 112
YF++ S+ P +N VI + A + F ++ + P D+ +Y ++
Sbjct: 280 YFEIMKSSKVAP---DTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSI 336
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+Y++ + VF+ +V+ GV+PN +SY+ L+ A+ ++ AL + GF
Sbjct: 337 MYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGF 396
Query: 173 AP 174
P
Sbjct: 397 KP 398
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + +A +F + KP+ +Y+ L+ AH + A++++D+M
Sbjct: 156 YGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQ 215
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T V C
Sbjct: 216 RAAIPPSRTTYNNVINAC 233
>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 426
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L + D +A F +
Sbjct: 15 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 71
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 72 NS-GYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKF 130
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 131 LEALSVFSEM 140
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 238 ANNLIQEMQSRGIEPNSIT 256
>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 511
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + +C R LD L+ ++ +E S A NC D++ A Q
Sbjct: 325 YTSVIKCLASCGR-----LDDAESLLDEMA-SEGVCPSPATYNCFFKEYRGRKDVNGALQ 378
Query: 92 TF---EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+ +A GS TPDIH+YN L+ F KL + +V+ + V P+ SY+LLV
Sbjct: 379 LYNKMKAPGSP--ATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLV 436
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDEES 194
N+ + A EM+ GF P K T + + RR + +DEE+
Sbjct: 437 HGLCDNKKWREACQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEA 494
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ SY+ +++ + + K +F + G+ P +Y+ ++ + A
Sbjct: 282 GIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341
Query: 161 LSVIDEMVNAGFAPSKET 178
S++DEM + G PS T
Sbjct: 342 ESLLDEMASEGVCPSPAT 359
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ A C++ G N +D Y+ + + G PD +YNALI + +A
Sbjct: 345 HPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEK-GCPPDGKTYNALIKLMTSQRMPDDAV 403
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
R+++ ++ G++P+ SY++++ ++ R+ + +V DEM GF P
Sbjct: 404 RIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCP 451
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 42/73 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
TP++ +Y L+ + ++K EA R++ ++ G KP+ ++++++++ L ++ + A+
Sbjct: 239 FTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAI 298
Query: 162 SVIDEMVNAGFAP 174
+ M G +P
Sbjct: 299 KFFEVMKAKGPSP 311
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI ++N ++ + KK +A + FE + + G P+ SY++L+ K A
Sbjct: 273 GFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEA 332
Query: 161 LSVIDEMVNAGFAP 174
+ EMV++G P
Sbjct: 333 VGYFYEMVDSGCHP 346
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FE + + G +PD+ SY LI K K EA F +V G P+A Y+ L+
Sbjct: 297 AIKFFEVMKAK-GPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLM 355
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ ++ EM G P +T
Sbjct: 356 TGYGNHKRMDMVYELLKEMKEKGCPPDGKT 385
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P IHSYN ++ ++ +++ V++ + G P+ SY++ + ++ + A
Sbjct: 413 GIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEA 472
Query: 161 LSVIDEMVNAGF-APS 175
++EM+ G AP
Sbjct: 473 CKYLEEMIEKGMKAPQ 488
>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
Length = 511
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + +C R LD L+ ++ +E S A NC D++ A Q
Sbjct: 325 YTSVIKCLASCGR-----LDDAESLLDEMA-SEGVCPSPATYNCFFKEYRGRKDVNGALQ 378
Query: 92 TF---EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+ +A GS TPDIH+YN L+ F KL + +V+ + V P+ SY+LLV
Sbjct: 379 LYNKMKAPGSP--ATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLV 436
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDEES 194
N+ + A EM+ GF P K T + + RR + +DEE+
Sbjct: 437 HGLCDNKKWREACQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEA 494
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY+ +++ + + K +F + G+ P +Y+ ++ + A
Sbjct: 282 GIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDA 341
Query: 161 LSVIDEMVNAGFAPSKET 178
S++DEM + G PS T
Sbjct: 342 ESLLDEMASEGVCPSPAT 359
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
++ C+++G+ ++ LE + +A+ V NC++ +++ + Y E V
Sbjct: 502 MISMCAKRGW--IERAVKLLEEIRKAQLKPDGVT-YNCLM----SMYGREGMYHKAEEVM 554
Query: 98 SSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
S G P++ +YN L+Y++ K + +A+RVF +V+ V+P+ +++ LV ++ +
Sbjct: 555 SEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSL 614
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKKV 182
K ALSVI+ M G P++ T K +
Sbjct: 615 GLYKEALSVIEYMTEHGCQPTQITFKAL 642
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR F+ + ++PD ++YN +I A + EA R+F+ + G PN ++Y+
Sbjct: 127 DRIQSLFQEM-KDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNA 185
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+D + K A ++ EM AG +P+
Sbjct: 186 LLDVYGKGGMHKEASELLVEMEAAGISPN 214
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
++ + S++ ++++L + Y N +I C A + F+ + + G P+
Sbjct: 126 WDRIQSLFQEMKDLEISPDDY----TYNTMITACIQNSHCQEALRLFQEMKEA-GCCPNR 180
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+YNAL+ +GK EAS + + + G+ PN ++Y+ L+ A+ A ++
Sbjct: 181 VTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKS 240
Query: 167 MVNAGFAPSKET 178
+++ G P + T
Sbjct: 241 LLSKGLCPDEFT 252
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+I +YN LI A+ + EA+ + + L+S G+ P+ +Y L+ A + A
Sbjct: 210 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 269
Query: 161 LSVIDEMVNAGFAPS 175
L EM P+
Sbjct: 270 LETFTEMRKTNCTPN 284
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TPD+ ++N+L+ +FG E S VF + G P ++++L++ + ++
Sbjct: 317 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVD 376
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ ++ G P+ T + RE + ++V
Sbjct: 377 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKV 412
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+LG N L A + FE++ + D+++Y +LI + ++ E +FE + G
Sbjct: 47 VLG--NHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREG 104
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAAL-SVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ NA++Y++++D + D + S+ EM + +P T + C++
Sbjct: 105 QRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQ 157
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ R PP V + + VI G +L +A+Q E + G+ PD +Y++LI
Sbjct: 444 VERGLPP--DVVSYSTVIAGFCRERELGKAFQMKEEMVEK-GVLPDTVTYSSLIQGLCLQ 500
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+K EA +F ++ G+ P+ ++Y+ L++A+ + + AL + DEMV GF P T
Sbjct: 501 QKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVT 559
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG GL+P++ +Y LI K A +F+ + G++PN +Y+ L+D
Sbjct: 337 EMVGK--GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ 394
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
A V+ EM+ +GF+PS T
Sbjct: 395 KGLMNEAYKVLSEMIVSGFSPSVVT 419
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ AY+ + S G +P + +YNAL++ + L + EA + +V G+ P+ +SYS
Sbjct: 398 MNEAYKVLSEMIVS-GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYS 456
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++ R+ A + +EMV G P T ++ C+++ E+ D + ++
Sbjct: 457 TVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR 516
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF-- 123
P+ S A + V+ + + + +A T + + G P + SYNA++ A + +
Sbjct: 128 PFSSSAVFDLVVKSLSRLGFVPKAL-TLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHR 186
Query: 124 ---EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+A RVF +V GV PN +Y++++ ++ D + L + +M G +P+ T
Sbjct: 187 DYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVT 244
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN L+ F K + + +V G+ PN ++Y+ L++ + A
Sbjct: 307 GLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRA 366
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + D+M G P++ T
Sbjct: 367 VEIFDQMRVRGLRPNERT 384
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + DL++ + G++P++ +YN LI A K KK EA +
Sbjct: 206 NVYTYNVIIRGVVSQGDLEKGLGFMRKMEKE-GISPNVVTYNTLIDASCKKKKVKEAMAL 264
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GV N +SY+ +++ +++EM G P + T
Sbjct: 265 LRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVT 314
>gi|356560545|ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46610-like [Glycine max]
Length = 808
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F+ + + G P I SY AL+ A K K +A RV+ H++
Sbjct: 568 NAVLVACSKASETTAAVQIFKRMVEN-GEKPTIISYGALLSALEKGKLYDDALRVWNHMI 626
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
+GV+PNA +Y+++ H + ++I EMV G + T + C
Sbjct: 627 KVGVEPNAYAYTIMASIHTAQGNFNRVDAIIQEMVTLGIEVTVVTYNAIITGC------- 679
Query: 194 SNDRVEALAKKFDIRMNTEN 213
+++ + ++A ++ RM +N
Sbjct: 680 AHNGMSSVAYEWFHRMKVQN 699
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F+ +V G KP +SY L+ A + A
Sbjct: 559 GLKPGCREWNAVLVACSKASETTAAVQIFKRMVENGEKPTIISYGALLSALEKGKLYDDA 618
Query: 161 LSVIDEMVNAGFAPS 175
L V + M+ G P+
Sbjct: 619 LRVWNHMIKVGVEPN 633
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH----LTNRDQKA----AL 161
N I+ GK KK + A ++E L+ G KPN +SY L+V +H L+ +K +
Sbjct: 491 NHAIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIV-SHFNFLLSAAKRKGIWRWGV 549
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P V C +
Sbjct: 550 KLLNKMEDKGLKPGCREWNAVLVACSK 576
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N +I G LD A + +S+G+ PD+ +YN+LIY + K A
Sbjct: 343 PKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLA 402
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V + + G KPN SY++LVD A ++++EM G P+
Sbjct: 403 LEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPN 452
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D Y L +S A+ + NC+I + A + F + G PD++++
Sbjct: 434 IDEAYNLLNEMS-ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKPDVYTF 491
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N+LI ++ + A + ++S GV N ++Y+ L++A L + K A +++EMV
Sbjct: 492 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 551
Query: 170 AG 171
G
Sbjct: 552 QG 553
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+++SY L+ F KL K EA + + + G+KPN + ++ L+ A A
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472
Query: 161 LSVIDEMVNAGFAP 174
+ + EM G P
Sbjct: 473 VEIFREMPRKGCKP 486
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPDI ++N+LI + + + +F L + G+ P+ ++Y+ L+ A
Sbjct: 623 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDA 682
Query: 161 LSVIDEMVNAGFAPSKET 178
++DE + GF P+ T
Sbjct: 683 CLLLDEGIEDGFVPNDRT 700
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN+LI K+ EAS +F L S G++P+A++Y+ L+ H A
Sbjct: 617 GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDA 676
Query: 161 LSVIDEMVNAGFAPSKET 178
++ + V++GF P++ T
Sbjct: 677 CLLLYKGVDSGFIPNEVT 694
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I +++ A Q F + S G PDI+++N+LI K K EA ++ +
Sbjct: 451 NCLICALCKDGNIEEALQLFGEM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV N ++Y+ LV A L + A ++DEM+ G
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL + + EN++ A+ ++ ++ N +I G N L+ A ++ +
Sbjct: 276 FNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM- 334
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
GL P+I +YNALI F K K EA++VF+ + + PN ++++ ++DA+
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ S+ M++ G P+ T
Sbjct: 395 EEGFSLCSSMLDEGILPNVST 415
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V+ NC+I G DL A + + + GL D+ +YN LI K K+ A ++
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENK-GLKGDVVTYNILIDGLCKNDKSRNAEKL 470
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ +LG+KPN ++Y+ L+D + KAAL+V M
Sbjct: 471 LNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRM 509
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ ++N LI F K + A + FE + G+KPN ++Y+ L++ N + A+
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAI 328
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ D+MV G P+ T + C ++M +E+ + ++K+
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN LI + + A + + + G+K + ++Y++L+D N + A
Sbjct: 408 GILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA 467
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EM N G P+ T
Sbjct: 468 EKLLNEMFNLGLKPNHVT 485
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
TS PL+ A ++ + D Y E + R + ++ N I G L++A
Sbjct: 165 LTSCNPLLSALVKEN-KIGDVEYVYKEMIKRR--IHTNLNTFNIFINGLCRAGKLNKAED 221
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
E + ++G++P++ +YN L+ + G K ++A + +++ + PN ++++ L+
Sbjct: 222 AIEDM-KAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLI 280
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D + + AA +EM G P+
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPN 307
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 159 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGXCKESKXDDANEL 217
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN + ++ L+D H N A+ + +M++ +P
Sbjct: 218 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 140 DIRJAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 198
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S+L++ A + DEM+ G P+
Sbjct: 199 SVLINGXCKESKXDDANELFDEMLVKGLVPN 229
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + ++ Y ALI ++ +A ++ ++S+
Sbjct: 306 LIDGCCKEGDLDSAFEHXKRMIQENXRLDEV-XYTALISGLCXEGRSVDAEKMLREMLSV 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+A +Y+++++ D ++ EM G PS
Sbjct: 365 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 404
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 246 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYT 304
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D +A M+
Sbjct: 305 TLIDGCCKEGDLDSAFEHXKRMIQ 328
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N +I +D AY F+ + + G PD +YN+L++ + EA R+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDHFTYNSLVHGVCRRGIVDEAVRL 245
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ G++PN +Y++LVD + A ++D+M G APS+ T + + R
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305
Query: 189 EMDEESNDRV 198
++ + R+
Sbjct: 306 CLERDKAYRM 315
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N LI + KL A V + L+ G P+ ++++ L+D A
Sbjct: 463 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDA 522
Query: 161 LSVIDEMV--NAGFAPS 175
+EM + GF PS
Sbjct: 523 FVCFEEMAEWDEGFVPS 539
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ +++Q + + +S G+ PD H YN +I FGK A F+ ++S G++P+ +++
Sbjct: 411 EWQKSFQVLKEMKNS-GVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTW 469
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D H + A + +EM+ GF+P T
Sbjct: 470 NTLIDCHCKAELHERAEELFEEMMEKGFSPCVTT 503
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I+G A D ++A + V +S GL+P + A+I A G + EA +FE +
Sbjct: 260 NDIIVGFAKAGDPNKAMEFLGMVQAS-GLSPRTATLIAVISALGDSGRIIEAEAIFEEMK 318
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP +Y+ L+ ++ K A ++ EM +G +P + T
Sbjct: 319 DNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECT 363
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+RA + FE + G +P + ++N +I +FG+ ++ + + ++ SLG+ PN ++Y+
Sbjct: 483 ERAEELFEEMMEK-GFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTT 541
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+D + + A+ +++M +AG PS
Sbjct: 542 LIDIYGKSGRFSDAIECLEDMKSAGLKPS 570
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P + + N+LI AFG+ ++ EA V +++ +KP+ ++Y+ L+ A +
Sbjct: 602 LKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVP 661
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
SV +EM+ AG P ++ + + R ++ M + N
Sbjct: 662 SVYEEMILAGCTPDRKA-RAMLRSALKYMKQTLN 694
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
WD +T S GL P++ +Y LI +GK + +A E + S G+KP++
Sbjct: 517 WD---DVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTM 573
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L++A+ + A++ M PS
Sbjct: 574 YNALINAYAQKGLSEQAVNAFRLMRADSLKPS 605
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +YN L+ + K +A + + GV P+ +YSLL+DA+ ++A
Sbjct: 321 GLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESA 380
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
V+ EM P+ ++
Sbjct: 381 RIVLKEMEANNIMPNSYVFSRI 402
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P YNALI A+ + + +A F + + +KP+ ++ + L++A +R
Sbjct: 564 SAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDA 623
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A SV+ M P T + + +R
Sbjct: 624 EAFSVLKYMKENDLKPDVVTYTTLMKALIR 653
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R PP +V N ++ G DL+ A + + G+ PD+++Y A +
Sbjct: 269 EMLRRGVPP--TVVTFNTLMSGMCKASDLNSA-NALRGLMAKAGVAPDVYTYGAFMQGLC 325
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
K + +A +FE + GV PN + ++ L+DAH + A L + EM G
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGI 380
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +LD A + + + S G+ D +Y LI K ++ ++ R+ ++
Sbjct: 425 LIDGFCKEGELDMAMEMKQEM-SDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEA 483
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G++P+ +Y++++DA N D K ++ EM N G P
Sbjct: 484 GLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPG 523
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +YNAL +++ A+ + E + + G+KP+ ++Y+ L+D + A
Sbjct: 379 GIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMA 438
Query: 161 LSVIDEMVNAGFA 173
+ + EM + G A
Sbjct: 439 MEMKQEMSDEGVA 451
>gi|240278323|gb|EER41830.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 1523
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + + + D R F++ + +G + N LIY + + ++A +
Sbjct: 549 SEEAYQIALTAFSRLGDFRRVTDLFKSYVNHYGQPRKLRLVNPLIYVNAAVGRVYQARKQ 608
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD+ ALS EM+ G P TL +
Sbjct: 609 LERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDSHTLGILMGMFA 668
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ + ES LA+ +DI++N
Sbjct: 669 KDGNVESVMDFLQLARGYDIQLN 691
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ + +N +I A + + +A + E + S F L+PD+ S+N ++ A K + A
Sbjct: 584 RKLRLVNPLIYVNAAVGRVYQARKQLERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALS 643
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
F+ +++ G+KP++ + +L+
Sbjct: 644 TFQEMIATGLKPDSHTLGILM 664
>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 757
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +YN LI+ FG KK A RVF + GV P+ +Y+ L++A + D ++A
Sbjct: 247 GVAPTLSTYNTLIWGFGLCKKMESAVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESA 306
Query: 161 LSVIDEMVNAGF 172
V DEM AG
Sbjct: 307 RKVFDEMPEAGL 318
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+++ N +I G ++ A + F + G+ PD+ +YN L+ A+ + A +V
Sbjct: 251 TLSTYNTLIWGFGLCKKMESAVRVFGDM-KGHGVAPDVTTYNTLLNAWVRKGDLESARKV 309
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ + G++ N++SY++++ ++ + AL + EM G +++T
Sbjct: 310 FDEMPEAGLERNSISYNVMIKGYVDANKVEEALGLFTEMGEKGLRLTEKT 359
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + PD + AL+ A+G+ EA ++F + LG+ A+SY+ ++ A L +
Sbjct: 175 SFSVCPDEATVAALVAAYGRAGIPQEAVKLFRLMPELGITRTALSYNAVLKAILCRGREA 234
Query: 159 AALSVIDEMVNAGFAPSKET 178
A V + M+ G AP+ T
Sbjct: 235 MARRVYNAMIADGVAPTLST 254
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+T SYNA++ A + A RV+ +++ GV P +Y+ L+ + ++
Sbjct: 211 LGITRTALSYNAVLKAILCRGREAMARRVYNAMIADGVAPTLSTYNTLIWGFGLCKKMES 270
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A+ V +M G AP T + VR+ D ES +V
Sbjct: 271 AVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESARKV 309
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY +I KL + EA RV + ++ G +PN ++Y LVD D A
Sbjct: 295 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 354
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ ++ +M G+ P+ T + R D E +V
Sbjct: 355 VELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 24 DMEEIFS--PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+MEE S P Y +V K + D+ + +S+ P +V + ++ G
Sbjct: 937 EMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSP--NVVTYSSLLHGLC 994
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
LD A + + S G +P+I +YN +I KL + EA + E +V G +PN
Sbjct: 995 KAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 1053
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y++L+DA + A+ +++ MV G+ P+
Sbjct: 1054 VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN 1087
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+ + Y L+ + R P ++V N VI G + LD A + F+ + S PD+ +Y
Sbjct: 893 IGTAYELLKEMPRHGVP-QNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTY 951
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+ ++ + K K +A R+ E +VS G PN ++YS L+ A +++ M
Sbjct: 952 STIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 1011
Query: 170 AGFAPS 175
+G +P+
Sbjct: 1012 SGCSPN 1017
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D + L ++R + + N VI G +DRAY+ F + S GL PD +Y+
Sbjct: 1210 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYS 1268
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+I + K + EA+ V E ++ G P A++Y L+D + AL ++ +++
Sbjct: 1269 IVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 1328
Query: 171 GFAP 174
G P
Sbjct: 1329 GSYP 1332
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+S+ PP N +I G + LD A + E + + G P++ SYN +++
Sbjct: 217 LHFREMSKTCPP--DSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLH 273
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFA 173
F K + A + E +V+ G P+ +SY+ +++ L DQ A V+D+M+ G
Sbjct: 274 GFCKANRVENALWLLEQMVTRGCPPDVVSYTTVING-LCKLDQVDEACRVMDKMIQRGCQ 332
Query: 174 PS 175
P+
Sbjct: 333 PN 334
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
+ ++L NL + ++ N ++ G D+A + G +PDI +YN +
Sbjct: 1176 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 1235
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I K K+ A ++F ++S G+ P+ ++YS+++ + R A +V++ M+ GF
Sbjct: 1236 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 1295
Query: 173 APSKET 178
P T
Sbjct: 1296 DPGAIT 1301
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G +P++ +Y++L++ K K EA+ + + + G PN ++Y+ ++D H
Sbjct: 976 SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRID 1035
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +++EMV+ G P+ T
Sbjct: 1036 EAYHLLEEMVDGGCQPNVVT 1055
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD L+ ++R+ ++ N +I G + +D AY E + G P++ +Y
Sbjct: 999 LDEATALLQRMTRSGCS-PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG-GCQPNVVTY 1056
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
L+ AF K K +A + E +V G PN +Y+ L+D + + A ++ M+
Sbjct: 1057 TVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQ 1116
Query: 170 AGFAPS 175
G P+
Sbjct: 1117 KGCVPN 1122
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 20 DSIIDMEEI----FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINC 75
D+I +EE+ F+P Y V+ K ++++ + ++R PP V +
Sbjct: 248 DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPP--DVVSYTT 305
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G + +D A + + + G P++ +Y L+ F ++ A + +
Sbjct: 306 VINGLCKLDQVDEACRVMDKMIQR-GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PNA++Y+ ++ D + A V+ M+ G P
Sbjct: 365 GYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPP 403
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++RA+Q + + + G PD +Y+ +I F K K EA + E ++ G +P+
Sbjct: 385 DMERAHQVLQMMIQT-GCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443
Query: 145 SLLVDA 150
S L+DA
Sbjct: 444 STLIDA 449
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
Y V N V+ G ++ A+ F+ + ++ G+ PD+ +Y+ +I++F K A
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA-GVMPDVVTYSIVIHSFCKDNNLDSAF 565
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ E + P+ ++YS L++ A V EM+ G AP+
Sbjct: 566 KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPN 614
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN L+ F T +A +FE + G +P+ +Y+ LV HL ++
Sbjct: 1364 GLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV-GHLVDKKSYKD 1422
Query: 161 L--SVIDEMVNAGFAPSKETLKKV 182
L V MV+ GF + E K+
Sbjct: 1423 LLAEVSKSMVDTGFKLNHELSSKL 1446
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G + DLD A + + + G P+ +YN +++ F + A +V + ++ G
Sbjct: 344 GFCRVGDLDGAVELVRKM-TERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
P+A++YS ++ + A ++++M+ G P L
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+LD A++ E + + PD+ +Y+ALI K +A VF+ ++ G PN ++Y
Sbjct: 560 NLDSAFKMLERMKEA-KCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTY 618
Query: 145 SLLVDAHL-TNRDQKAA 160
+ L+D N+ ++AA
Sbjct: 619 NTLIDGLCKINKVEQAA 635
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y+ LI+A K K+ EA + +V P+ ++Y+ +VD +R A +
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532
Query: 164 IDEMVNAGFAP 174
D M AG P
Sbjct: 533 FDRMRAAGVMP 543
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C + LD A F ++ +GL P + ++ +I G+L EA + ++ + KP
Sbjct: 1532 CCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDL---MLGMPCKP 1588
Query: 140 NAMSYSLLVDAHLTNRDQKAALSV 163
+A +++ L+ A+ D + AL V
Sbjct: 1589 SAATWNCLLSAYKICGDFERALRV 1612
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI +YN ++ F + + EA V ++ G+ P+ +Y+ L++ H+T + A
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592
Query: 161 LSVIDEMVNAGFAP 174
DEM+ GFAP
Sbjct: 593 FRFHDEMLQRGFAP 606
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PDI +YN LI F K+ + +AS +++ ++S + PN ++Y +L++A+ + A
Sbjct: 394 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 453
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196
+ D M+ G P+ T V + R D D
Sbjct: 454 RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKAD 488
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL + Q N+++A + + + A N +I G + ++++A + ++ +
Sbjct: 366 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI 425
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S + P+ +Y LI A+ + EA R+++ ++ G+KP ++ + ++ + + D
Sbjct: 426 SR-KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDS 484
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
A + M+ G AP + + VRE
Sbjct: 485 SKADEFLGRMIAKGVAPDHISYNTLINGFVRE 516
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GL+PD +YN L+ + EA +F ++ GV P+ +S+S L+ NR
Sbjct: 216 NIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLD 275
Query: 159 AALSVIDEMVNAGFAP 174
AL +M G P
Sbjct: 276 QALVYFRDMKKFGLVP 291
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 22 IIDMEEI-FSPFTSLYP--LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVIL 78
+I+M I SP T+ Y LV +C R F ++ ++ L + P + + + +I
Sbjct: 211 LIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEM--LRQGVVP--DLVSFSSLIA 266
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
+ LD+A F + FGL PD Y L++ + + EA ++ + ++ G
Sbjct: 267 VFSRNRHLDQALVYFRDM-KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV 325
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++Y+ +++ + A + DEMV G P
Sbjct: 326 LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 361
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +YN LI A+ + EA + + G+KP+ +Y+ +++ A
Sbjct: 148 GIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARA 207
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM+N G +P T
Sbjct: 208 KGILIEMLNIGLSPDTTT 225
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 64 EPPYKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
E P++ + N VI G LD A Q F+++GS G +PD+ ++ LI + K+
Sbjct: 529 EMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSK-GFSPDVVTFTTLINGYCKV 587
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + VF + G+ NA++Y L+ + AL + EM+++G P T+
Sbjct: 588 GRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITI 647
Query: 180 KKV 182
+ +
Sbjct: 648 RNM 650
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN++I F K + A R+F + + G P+ +++S+L+D + +
Sbjct: 348 GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDG 407
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ EM G + T
Sbjct: 408 MKLLHEMSRRGLVANTIT 425
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 43 SRKG-------FETLDSVYFQLENLSRA---------EPPYKSVAAINCVILGCANIWDL 86
SR+G + TL + QL NL+ A +V N ++ G N L
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474
Query: 87 DRAYQTFEAVGSSF----------GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
A + F+ + S + PD+ +YN LI K EA ++E + G
Sbjct: 475 KDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ P+ ++Y+ ++D A + D M + GF+P
Sbjct: 535 LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSP 572
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + F + + G +PD+ +++ LI + K+ + ++ + G+ N ++Y+
Sbjct: 369 LDAAERMFYLMATK-GCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYT 427
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ + AAL ++ EM+++G P+ T
Sbjct: 428 TLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT 460
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G N A + +E + GL PD +YN++I K + EA+++F
Sbjct: 504 VQTYNILICGLINEGKFSEAEELYEEMPHR-GLVPDTITYNSVIDGLCKQSRLDEATQMF 562
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ + S G P+ ++++ L++ + L V EM G + T + +
Sbjct: 563 DSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTL 615
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++PD+ +++ LI A K K FEA ++ ++ G+ PN ++Y+ ++D AA
Sbjct: 314 MSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAE 373
Query: 162 SVIDEMVNAGFAP 174
+ M G +P
Sbjct: 374 RMFYLMATKGCSP 386
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G AN DL AYQ F +G + ++ +YN +I AF + ++F + +
Sbjct: 572 IISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAG 631
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEES 194
G P+ +Y +++D + + + EM+ GF PS T +V CV+ E+
Sbjct: 632 GCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEA 691
Query: 195 NDRVE 199
D +
Sbjct: 692 VDIIH 696
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+TPD+ +YN+++ K K + FE +V G PN ++Y++L ++
Sbjct: 489 SHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVN 548
Query: 159 AALSVIDEMVNAGFAP 174
AL ++DE++N G P
Sbjct: 549 EALDLVDEILNKGITP 564
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD+ +YN LI K EA + LV+ G++P+ +Y+ L+D + + A
Sbjct: 281 GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNA 340
Query: 161 LSVIDEMVNAGFAPSKET 178
++ + GF P + T
Sbjct: 341 EKILQGAICKGFVPDEFT 358
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD++++ I +F + K+ A R+ ++VS G + NA++Y +V + A
Sbjct: 141 GIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEA 200
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ ++M+ G P T K+ ++ + + ++R+
Sbjct: 201 YELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERL 238
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI + K+ A ++ + + G P+ +Y L++ N + A
Sbjct: 316 GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375
Query: 161 LSVIDEMVNAGFAPS 175
L++ + + G P+
Sbjct: 376 LALFNAALGKGLKPT 390
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G + DI +YN +I K+ +A+ + ++ G P+ +++ L+D +
Sbjct: 418 SENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKM 477
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
+ + ++++M + G P T V
Sbjct: 478 ETTIQILNKMWSHGVTPDVITYNSV 502
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGXCKESKXDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN + ++ L+D H N A+ + +M++ +P
Sbjct: 235 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRJAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S+L++ A + DEM+ G P+
Sbjct: 216 SVLINGXCKESKXDDANELFDEMLVKGLVPN 246
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D Y ALI ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDXAFEHXKRMIQE-NXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L+PD+ +YN LIY K +A + + + G+KP+ ++Y+
Sbjct: 263 VDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYT 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D A M+
Sbjct: 322 TLIDGCCKEGDLDXAFEHXKRMIQ 345
>gi|225557641|gb|EEH05927.1| hypothetical protein HCBG_06191 [Ajellomyces capsulatus G186AR]
Length = 1523
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + + + D R F++ + +G + N LIY + + ++A +
Sbjct: 549 SEEAYQIALTAFSRLGDFRRVTDLFKSYVNHYGQPRKLRLVNPLIYVNAAVGRVYQARKQ 608
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD+ ALS EM+ G P TL +
Sbjct: 609 LERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDSHTLGILMGMFA 668
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ + ES LA+ +DI++N
Sbjct: 669 KDGNVESVMDFLQLARGYDIQLN 691
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ + +N +I A + + +A + E + S F L+PD+ S+N ++ A K + A
Sbjct: 584 RKLRLVNPLIYVNAAVGRVYQARKQLERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALS 643
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
F+ +++ G+KP++ + +L+
Sbjct: 644 TFQEMIATGLKPDSHTLGILM 664
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFS--PFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
L + F ++ E A+ + + EI P S L+ AC + G + + E ++
Sbjct: 482 LMQGFASIGEIGLAF-KCLKRVNEITQKPPIISYASLLKACCKAG--RMQNAIAVTEEMA 538
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
A P + N ++ G A D+ AY + + G TPDIHSY + + A K
Sbjct: 539 FAGVPMNNYI-FNTLLDGWAQRGDMWEAYGIMQKMRQE-GFTPDIHSYTSFVNACCKAGD 596
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+A+ E + ++PN +Y++L+ + + AL DEM AG P K
Sbjct: 597 MQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDK 651
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G + D A+ FE + S G+ PD +YN L+ AF K ++ A ++ + + G
Sbjct: 345 GYVQLGDFANAFSVFEDM-SEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCS 403
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P +Y ++D + D + A + EM AG P+ T
Sbjct: 404 PTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATT 443
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P +Y LI + KL K +A + + + G+ N +YS+LVD ++ D A
Sbjct: 296 GLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANA 355
Query: 161 LSVIDEMVNAGFAP 174
SV ++M AG P
Sbjct: 356 FSVFEDMSEAGIEP 369
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+T + ++Y+ L+ + +L A VFE + G++P+ ++Y++L+ A +R A
Sbjct: 331 GITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRA 390
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ M G +P+ +T
Sbjct: 391 IQLLGRMKTRGCSPTIQT 408
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G + RA ++E E A ++ F +T+L +GF ++ + + L
Sbjct: 454 LGQIDRAASVIDEMELA------GVQPNFRSYTTLM--------QGFASIGEIGLAFKCL 499
Query: 61 SRA-----EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
R +PP S A++ + C + A E + + G+ + + +N L+
Sbjct: 500 KRVNEITQKPPIISYASL---LKACCKAGRMQNAIAVTEEMAFA-GVPMNNYIFNTLLDG 555
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +EA + + + G P+ SY+ V+A D + A I+EM P+
Sbjct: 556 WAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPN 615
Query: 176 KET 178
+T
Sbjct: 616 LQT 618
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L+ +P ++S + + G A+I ++ A++ + V + P I SY +L+ A K
Sbjct: 469 LAGVQPNFRSYTTL---MQGFASIGEIGLAFKCLKRV-NEITQKPPIISYASLLKACCKA 524
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ A V E + GV N ++ L+D D A ++ +M GF P +
Sbjct: 525 GRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSY 584
Query: 180 KKVRRRCVREMD-EESNDRVEALAKKFDIRMNTE 212
C + D +++ + +E + K+ D++ N +
Sbjct: 585 TSFVNACCKAGDMQKATETIEEM-KQQDLQPNLQ 617
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSR--AEPPYKSVAAINCVILGCANIWDLDRA 89
+S+ L++ +R+G + D F E+L+ A+P ++A + I+ L++A
Sbjct: 577 LSSVSQLIMKFAREG--STDEAKFLYEHLTELGAKPDDTAIATL---IVQYGQAQQLEQA 631
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ FE +SF + + YNA++ A + KT EA R+F L+ G +A++ S+LV
Sbjct: 632 QKLFETASTSFPVGGSV--YNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILV- 688
Query: 150 AHLTNRDQ-KAALSVIDEMVNAGFAPSKET 178
HLT + + +A+S+ D M+++G S +T
Sbjct: 689 THLTKQGKLYSAVSIYDRMISSGIPRSMQT 718
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+S+ N +I L++A + F A GL D +Y ++ +GK K EAS
Sbjct: 714 RSMQTFNIMISVYGQGGKLEKAVEMFSA-AQELGLPIDEKTYTNMLSFYGKAGKHHEASL 772
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+F + G++P +S++ +++A+ T+ A + EM P T
Sbjct: 773 LFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHT 823
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD Y L+ +GKL +A R+FE + G+ + +Y + H+ ++ AL
Sbjct: 376 IVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRAL 435
Query: 162 SVIDEMVNAGFAPSK 176
V+D M PS+
Sbjct: 436 QVLDAMRARNVKPSQ 450
>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 67 YKSVAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
Y + ++C IL G + DLD A + + + +G+ PD+ +Y ++ A+ +
Sbjct: 200 YITPDLVSCNILLKGLVGVRDLDAALKVLDEM-PGWGIVPDVVTYTTVLSAYCAKEDLKG 258
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A ++F+ +++ G P+ Y++L+D + + A ++DEM AG P++ T V
Sbjct: 259 AQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIE 318
Query: 185 RCVRE 189
C +E
Sbjct: 319 ACCKE 323
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A + F+ + + G PD+ Y LI + + K +A+R+ + + + GV+PN ++Y
Sbjct: 255 DLKGAQKLFDDIIAG-GRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTY 313
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
S++++A A +++ EM+ AG P K V C EE++ + K
Sbjct: 314 SVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVK 373
Query: 204 K 204
K
Sbjct: 374 K 374
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI + + EA +V++ +V +PNAM+Y L+
Sbjct: 409 GYKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEG 468
Query: 161 LSVIDEMVNAGFAPSK 176
+V EMV G APSK
Sbjct: 469 AAVFTEMVTKGCAPSK 484
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 81 ANIWD--LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
+WD ++R Y+ P+ +Y ALI F K+ K E + VF +V+ G
Sbjct: 434 GKVWDDMVERRYE------------PNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCA 481
Query: 139 PNAMSYSLLVDA 150
P+ + Y +LVD+
Sbjct: 482 PSKVLYQVLVDS 493
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENL 60
G +Q A ++E E A P Y +V+ AC ++G ++ ++ E L
Sbjct: 289 GKIQDAARIMDEMEAAG----------VQPNEVTYSVVIEACCKEG-KSAEACNLMREML 337
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
P +AA V + C + + A+Q + + + PD N LIY K
Sbjct: 338 GAGHTPDTPLAA-KVVDVMCQD-GKAEEAHQMWRWMVKK-NVPPDNTITNTLIYWLCKSG 394
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA ++F+ L G KP+ ++Y+ L+ N + + A V D+MV + P+ T
Sbjct: 395 MVREARKLFDELEK-GYKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMT 451
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P T ++ ++V K + +DS + +E + ++ Y ++ + +I G L
Sbjct: 196 LEPNTCIFNILVKHHCKNGD-IDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE 254
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FE + S + PD +YNALI F +K A ++ E + G PN +YS L+
Sbjct: 255 AIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALM 314
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + A V DEM + G P
Sbjct: 315 NGFCKEGRLEEAKEVFDEMKSLGLKP 340
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +DRA + E + + G P++ +Y+AL+ F K + EA VF+ +
Sbjct: 276 NALINGFCHGEKVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334
Query: 134 SLGVKPNAMSYSLLVD 149
SLG+KP+ + Y+ L++
Sbjct: 335 SLGLKPDTVGYTTLIN 350
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N +I +D AY F+ + + G PD +YN+L++ + EA R+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDHFTYNSLVHGVCRRGIVDEAVRL 245
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ G++PN +Y++LVD + A ++D+M G APS+ T + + R
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305
Query: 189 EMDEESNDRV 198
++ + R+
Sbjct: 306 CLERDKAYRM 315
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD +S+NALI +F +++K +A +F +V GV P++ +Y+ L+ A R A
Sbjct: 568 GVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKA 627
Query: 161 LSVI 164
++
Sbjct: 628 KEIL 631
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL S Y +L N+ A+ K + +I G N LD A+ FE +
Sbjct: 471 FNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEM- 529
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +G+ P+ +YN L++ +A + + GV P+A S++ L+ + R
Sbjct: 530 AEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKV 589
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + ++MV G P T
Sbjct: 590 DKAEDIFNDMVRFGVVPDSYT 610
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N LI + KL A V + L+ G P+ ++++ L+D A
Sbjct: 463 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDA 522
Query: 161 LSVIDEMVNAGFAPSKET 178
+EM G P+ +T
Sbjct: 523 FVCFEEMAEWGVRPNAQT 540
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 39 VVAC---SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
V+ C +RK LD E L R P N +ILG LD A+ T+
Sbjct: 723 VLCCHGMTRKATIVLD------EMLGRGIAP--DTITFNALILGHCKSSHLDNAFATYAQ 774
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ GL+P+I ++N L+ + EA V + +G++PN ++Y +LV +
Sbjct: 775 MLHQ-GLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKS 833
Query: 156 DQKAALSVIDEMVNAGFAPSKET 178
++ AL + EMV+ GF P T
Sbjct: 834 NKVEALRLYCEMVSKGFIPKAST 856
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN +I A + T +A ++ + +KPN ++Y+ LV L + A
Sbjct: 604 GLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKA 663
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
+++EM +AGF P+ T ++V + C
Sbjct: 664 KYLLNEMASAGFTPTPLTYRRVLQAC 689
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G D D A++ E + + G+ P + ++ LI + K+K+ EA ++
Sbjct: 224 VVGYNTLVAGFFYSGDADAAWEVAERMKAD-GVEPSVVTHTTLIGEYCKMKRIEEAFTLY 282
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-------ETLKKV 182
E +V GV P+ ++ S LVD + A ++ EM G AP+ ++L KV
Sbjct: 283 EGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKV 342
Query: 183 RR 184
+R
Sbjct: 343 QR 344
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 80 CANIWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C I L + + E++G S G+ D+ Y ++ GK K EA V H +S
Sbjct: 333 CTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALS 392
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-----VRRRCV 187
+ PN ++Y++LVDAH + A ++ +M +P+ T V+R C+
Sbjct: 393 DNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCI 450
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G P +YN+LI F K +A +F + GV + +Y +L++ R+
Sbjct: 847 SKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGT 906
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRR 184
++ +M GF PSK T+ + R
Sbjct: 907 EVRILLKDMKELGFKPSKGTISSMSR 932
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A+ +E + S G+ PD+ + +AL+ + + EA +F + +GV PN ++Y
Sbjct: 275 IEEAFTLYEGMVRS-GVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYC 333
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD-EESND 196
+D+ + +L ++ EMV+ G A V R +E EE+ D
Sbjct: 334 TFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKD 385
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V N +I G + D+ A E + ++ GL+ D+ YN L+ F A V
Sbjct: 188 GVVGWNALIDGYCKVQDMAAALAVVERM-TTQGLSLDVVGYNTLVAGFFYSGDADAAWEV 246
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E + + GV+P+ ++++ L+ + + + A ++ + MV +G P TL
Sbjct: 247 AERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTL 297
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD YN I +L K EA + + + G++P+ +Y+ ++ A + AL
Sbjct: 570 LSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKAL 629
Query: 162 SVIDEMVNAGFAPS 175
+++EM + P+
Sbjct: 630 KLLNEMKWSSIKPN 643
>gi|302823801|ref|XP_002993549.1| hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii]
gi|300138616|gb|EFJ05378.1| hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii]
Length = 664
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 50 LDSVYFQLENLSRAEPPYK---SVAAINCVILGCANIWDLDRA---YQTFEAVGSSFGLT 103
LD+ + LE++ P K S+ +N +I CAN D RA + + +V G
Sbjct: 225 LDAAFQILESMDLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDEG-- 282
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +YN LI + + + EA +V E + G++ N +S++ LV A + +D AAL +
Sbjct: 283 PSLVTYNMLIKGYARSENPLEALKVREEMQLRGMQLNKLSWNSLVMACVRGQDMDAALEI 342
Query: 164 IDEMVNAG 171
++EM AG
Sbjct: 343 LEEMKEAG 350
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 17 AYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVY------------FQLENLSRAE 64
AYG + + EE + F + V +RK + L + F+ R E
Sbjct: 324 AYGKARRE-EEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVE 382
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + ++L N D++ A + F + GL P++ Y L+ + KL +
Sbjct: 383 P---DLCSYTTMVLAYVNASDMNGAEKFFRRIKDD-GLKPNVVVYGTLMKGYSKLNNVEK 438
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
RV+E + GV+PN Y+ ++DAH N D A+ EM G+ P ++
Sbjct: 439 VMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEARGYPPDQK 491
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+ PD+ SY+ LI A+GK ++ EA VFE ++ GV+P SY++L+DA
Sbjct: 310 GMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDA 359
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 39/55 (70%)
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E S +++ + G+KP+ +SYSLL+ A+ R ++ AL+V +EM++AG P++++
Sbjct: 298 EVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 352
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S N +I G N +LD A ++ G++P + +YN+LI+A ++T EA +
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G+ P+A++Y++L++ + + K A + DEM+ +G P+K+T
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD +Y +LI K + EAS++FE +V G++P+A+ Y+ L+D + A
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMAS 346
Query: 162 SVIDEMVNAGFAPSKET 178
+ DEM+ G +P+ T
Sbjct: 347 AYKDEMLKKGISPTMST 363
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +A+ + + +S G+ P +Y +L++ K + EA +F+ +
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLAS-GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKIT 458
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
S GV P+A+ ++ L+D H +N + K A ++ +M P + T + + RE
Sbjct: 459 SEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCRE 514
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+++ R + P V N ++ G ++ A + F+ + G+ PD S+N LI +
Sbjct: 489 LKDMDRMKVPPDEVT-FNTIMQGHCREGKVEEARELFDEMKRR-GIKPDHISFNTLISGY 546
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ +A RV ++ G P ++Y+ LV N++ A ++ EMV+ G P
Sbjct: 547 SRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDD 606
Query: 177 ET 178
T
Sbjct: 607 TT 608
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S N +I G N +LD A ++ G++P + +YN+LI+A ++T EA +
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G+ P+A++Y++L++ + + K A + DEM+ +G P+K+T
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD +Y +LI K + EAS++FE +V G++P+A+ Y+ L+D + A
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMAS 346
Query: 162 SVIDEMVNAGFAPSKET 178
+ DEM+ G +P+ T
Sbjct: 347 AYKDEMLKKGISPTMST 363
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+++ R + P V N ++ G ++ A + F+ + G+ PD S+N LI +
Sbjct: 489 LKDMDRMKVPPDEVT-FNTIMQGHCREGKVEEARELFDEMKRR-GIKPDHISFNTLISGY 546
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ +A RV ++ G P ++Y+ LV N++ A ++ EMV+ G P
Sbjct: 547 SRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDD 606
Query: 177 ET 178
T
Sbjct: 607 TT 608
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 19 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSY 77
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 78 STLLTMYVENKKFLEALSVFSEM 100
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 138 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 197
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 198 ANNLIQEMQSRGIEPNSIT 216
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILG-CANIWDL-DRAYQTFEAVGSSFGLTPDIHSYNAL 112
F+L + R+ + ++ + +I G C N DL + A FE + + GL P++ Y AL
Sbjct: 647 FKLRDAMRSSNIHPTIFTYSSIIHGMCCN--DLVEEAKGIFEEMRNE-GLMPNVFCYTAL 703
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I + KL + + + + + S ++PN ++Y++++D + + K A +++EM+ G
Sbjct: 704 IGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGI 763
Query: 173 APSKETLKKVRRRCVREMDEE 193
+P T +++ +E + E
Sbjct: 764 SPDTVTYTVLQKGYCKENELE 784
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC ++ A++ E + G PD ++YN L+ K + RV
Sbjct: 526 NTLIFGCCKSGKIEEAFKLKEKMMKQ-GFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAK 584
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
GV PN +Y+L+++ + A+S+ +++V
Sbjct: 585 DHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLV 619
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L ++++ F+A+ G+ D+++Y I A+ K K EA +F + GV PN ++Y
Sbjct: 221 ELHKSFRVFDAMCRG-GVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTY 279
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALA 202
+ L+D + + AL MV PS T + V+ + DE ++ VE +
Sbjct: 280 NNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYS 339
Query: 203 KKF 205
K F
Sbjct: 340 KGF 342
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI---------------WDLD 87
S+ F +L S F + +L ++ +KS + + G I +D
Sbjct: 199 SKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKID 258
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A F +G G+ P++ +YN LI K + EA +V V P+ ++Y +L
Sbjct: 259 EAVGLFLKMGEG-GVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGIL 317
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
V+ + A SV+ EM + GF+P++
Sbjct: 318 VNGLVKFEKFDEANSVLVEMYSKGFSPNE 346
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + +Y L+ K +K EA+ V + S G PN ++ L+D + + AL
Sbjct: 307 VNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDAL 366
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
V D+M G P+ T + + R E ++V
Sbjct: 367 RVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQV 403
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 37 PLVVACSR---KGFETLDSVYFQLENLSRAEPPYKSVAAI---------------NCVIL 78
PL+ AC R KG + ++V + L++ + ++ I N +I
Sbjct: 223 PLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIR 282
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
GC ++ A + + + G PD+ ++N L++A+ L K E + + + + G++
Sbjct: 283 GCCKDSKMEEAIKLHGDM-TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQ 341
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P+ +SY ++D H +D + A + E+++ G P+
Sbjct: 342 PDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPN 378
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
Y +I + KL K EA FE + S G+ PN ++Y+ L+ A+ + + + A + DEM
Sbjct: 451 GYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEM 510
Query: 168 VNAGFAPSKETLKKVRRRC 186
V +G P T + RC
Sbjct: 511 VGSGVIPDNITYGTLIARC 529
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TP + ++ LI + ++ E V + + LGV PN + Y+ L+ H A
Sbjct: 76 GMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQA 135
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
L + DEMV P+ T + + +E + E +R+
Sbjct: 136 LRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERI 173
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI SY +I K K +A L+ G+KPN Y+ L+ + N D A
Sbjct: 339 GLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGA 398
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ M + G P+ T
Sbjct: 399 IDAVETMKSNGIQPTNVT 416
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V +I G + + A FE + S G++P+ +Y L+YA+ K + EAS++
Sbjct: 448 GVIGYTIMIQGYCKLGKMVEAVAYFEEM-RSRGISPNKLTYTTLMYAYSKSGNSEEASKL 506
Query: 129 FEHLVSLGVKPNAMSYSLLV 148
F+ +V GV P+ ++Y L+
Sbjct: 507 FDEMVGSGVIPDNITYGTLI 526
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 26 EEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E+ P T Y ++ A C K + +++ + +P Y + +A+ I G
Sbjct: 291 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSAL---IDGFMRE 346
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D+D + + V S G+ ++ +YN LI+ K K +A+ + + +V+LG KPN+ +
Sbjct: 347 GDIDEVLR-IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRT 405
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ LL++ + + AL ++DEM PS
Sbjct: 406 FCLLIEGYCREHNMGRALELLDEMEKRNLVPS 437
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G D+ RA + F+ + GL PD +Y+ +I + K + EA +F +
Sbjct: 687 NALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 745
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S GV+P++ Y+ LV D + A+++ EM+ GFA +
Sbjct: 746 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 787
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I YNAL+ K A ++F+ + G++P++++YS ++D + + + A
Sbjct: 678 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVEALAKKF 205
S+ EM + G P + C +E D E N E L K F
Sbjct: 738 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 20 DSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79
+ ++D + F +T Y + C V +++ + P + + ++ VI G
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMD--EKGLNPNEFIYSL--VIEG 272
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
+ D+D A + ++G GL P+ ++Y + + K+ EA FE + G+KP
Sbjct: 273 MCQVGDIDEAVELKRSMGEK-GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKP 331
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + S L+D + D L + D MV+ G
Sbjct: 332 DYNACSALIDGFMREGDIDEVLRIKDVMVSCGI 364
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L D +Y +L+Y + KL ++ E +FE +V+ GVKP+ ++Y L++ AH + A
Sbjct: 853 LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 912
Query: 162 SVIDEMVNAGF 172
+ DE+V G
Sbjct: 913 KLRDEVVGKGM 923
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A + + +G GL P + + N L+ +F + K EA+RVFE + SLG+ P+ +
Sbjct: 942 DLTEASKLLDEMGE-LGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTL 1000
Query: 145 SLLVDAHLTNRDQKAALSVIDEMV 168
LV+ +L + D + A ++I ++V
Sbjct: 1001 IDLVNGNLNDTDSEDARNLIKQLV 1024
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++ A I + K K EA++ F+ ++ G+ PN Y++L++ H + A
Sbjct: 538 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 597
Query: 161 LSVIDEMVNAGFAPSKET 178
LS+ + G P +T
Sbjct: 598 LSIFRRLHALGVLPDVQT 615
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + +I+ A+ ++ A + + + S G+ PDI YNA+I K K EAS
Sbjct: 472 NVVVYSILIMAYASEGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTY 530
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G+KP+A+++ + + A DEM++ G P+
Sbjct: 531 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 47 FETLDSVYFQLENLSRA-----EPPYKSVA----AINCVILGCANIWDLDRAYQTF-EAV 96
+ T+ Y + EN++ A E P K V N ++ GC D+++A F E +
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
F T S+N LI + K K EAS++F+ +++ + P+ ++Y+ ++D H
Sbjct: 781 QKGFATTL---SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 837
Query: 157 QKAALSVIDEM 167
+ A + EM
Sbjct: 838 MEEANLLFKEM 848
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ PD+ + +A I+ K + EA +VF L G+ P+ +YS L+ + +
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEM G AP+
Sbjct: 666 KAFELHDEMCLKGIAPN 682
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P SY A+I K A+++ E + G+KPN + YS+L+ A+ + + A
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR 493
Query: 162 SVIDEMVNAGFAP 174
++D M +G AP
Sbjct: 494 RLLDGMSCSGVAP 506
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N +I +D AY F+ + + G PD +YN+L++ + EA R+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPAD-GCRPDRFTYNSLVHGVCRRGIVDEAVRL 245
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ G++PN +Y++LVD + A ++D+M G APS+ T + + R
Sbjct: 246 VRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFR 305
Query: 189 EMDEESNDRV 198
++ + R+
Sbjct: 306 CLERDKAYRM 315
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD +S+NALI +F +++K +A +F +V GV P++ +Y+ L+ A R A
Sbjct: 568 GVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKA 627
Query: 161 LSVI 164
++
Sbjct: 628 KEIL 631
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL S Y +L N+ A+ K + +I G N LD A+ FE +
Sbjct: 471 FNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEM- 529
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +G+ P+ +YN L++ +A + + GV P+A S++ L+ + R
Sbjct: 530 AEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKV 589
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + ++MV G P T
Sbjct: 590 DKAEDIFNDMVRFGVVPDSYT 610
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N LI + KL A V + L+ G P+ ++++ L+D A
Sbjct: 463 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDA 522
Query: 161 LSVIDEMVNAGFAPSKET 178
+EM G P+ +T
Sbjct: 523 FVCFEEMAEWGVRPNAQT 540
>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 903
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA D+++A+ + + G+ P+I +YNALI KL A R+ L
Sbjct: 761 LIHGCAIDGDINKAFNLRDEMALK-GIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQK 819
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G PNA++Y+ L+D + + D A+ + ++M+ G
Sbjct: 820 GTTPNAITYNTLIDGLIKSGDVAEAMRLKEKMIEKGLV 857
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A Q FE V + L PD H + LI + + + +A RV ++++ +GV+ N +
Sbjct: 312 MEEAEQVFELV-TEKKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICN 370
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L++ + + A ++ M + P T
Sbjct: 371 SLINGYCKSGQLVEAEQILTRMNDWSLKPDHHT 403
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV ++N ++ D + F+ SFG+TP+I + N L+ A K A +
Sbjct: 151 RSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYK 210
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V + + ++G+ PN ++Y+ ++ ++ D ++A V++EM++ G+ P
Sbjct: 211 VLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYP 257
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI + + EA R+++ + KPNA +Y++L++ N + K
Sbjct: 393 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEG 452
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V++EM+ +G P+K T
Sbjct: 453 VRVLEEMLESGCFPNKTT 470
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ AY+ + + + GL P++ +Y ++ + A RV E ++ G P+A++Y
Sbjct: 204 DIESAYKVLDEI-PAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITY 262
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++L+D + A +V+D+M P++ T + R +E
Sbjct: 263 TVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKE 307
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + E + G PD +Y L+ + KL + EA+ V + + ++PN ++Y
Sbjct: 239 DMESAKRVLEEMLDR-GWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTY 297
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+++ A + A ++ DEM++ F P KV
Sbjct: 298 GVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKV 335
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 22/170 (12%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAA--------INCVILGCANIWDLDRAYQTFEAVGS 98
++T S+ F+L +RA P +S+ A I C G DL R Y S
Sbjct: 81 YDTYHSILFKLSR-ARAFDPVESLMADLRNSYPPIKC---GENLFIDLLRNYGLAGRYES 136
Query: 99 S---------FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV-SLGVKPNAMSYSLLV 148
S FG+ + S N L+ + ++ +F++ S G+ PN + +LLV
Sbjct: 137 SMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLV 196
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A D ++A V+DE+ G P+ T + V D ES RV
Sbjct: 197 KALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRV 246
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D A + F+A+G +G D+ +YN I+ + K+ + +A RVF+ + GV PN ++Y
Sbjct: 305 NVDMARELFDAIGE-WGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTY 363
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+D + A ++ M +G P
Sbjct: 364 NSLIDCLCKAGEVSGAWEIVKTMHRSGLTP 393
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI + L+ K K+ +A +F LV G+ P+ SY++L+ T+R A
Sbjct: 390 GLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEA 449
Query: 161 LSVIDEMVNAGFAPSKET 178
++++ +M P T
Sbjct: 450 MNLLRDMHLKNLVPHIVT 467
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 73 INCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+ C IL G LD+A F + S GLTPD+ SY LI+ ++ EA +
Sbjct: 396 VTCCILLDGLCKSKRLDQAILLFNQLVES-GLTPDVWSYTILIHGCCTSRRMGEAMNLLR 454
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + P+ ++YS L+D + A +++EM G P T
Sbjct: 455 DMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTIT 502
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ +C+I G + A++ + G PD +Y+ L+ A K + EA +F
Sbjct: 465 IVTYSCLIDGLCRSGRISNAWRLLNEMHVK-GPLPDTITYSILLDALWKKQHLDEAVFLF 523
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ G++P+ M Y++++D + + A+++ EM P
Sbjct: 524 NQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVP 568
>gi|342186470|emb|CCC95956.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 816
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 20/193 (10%)
Query: 32 FTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILG-CANIWDLDRA 89
T+ + L AC RKG + Y Q+ ++ P AA ++LG CA + D+ +A
Sbjct: 127 LTTYHLLFRACERKGQYHRAFHFYMQMREMTHIIPD----AATYDILLGFCAAVKDVPQA 182
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
E + + + P++++YN L+ A + E RV+ + GVKP +++ + +
Sbjct: 183 LFFVEEM-KRYNVVPNVNTYNCLMGALREKAPYEETLRVYNGMNERGVKPTVRTFNTVSE 241
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPS----KETLKKVRRRCVREMDEESNDRVEALAKKF 205
A L + D + A + +EM G P+ + VR+R D V A K
Sbjct: 242 AALLHDDYEMAFQLFEEMKKQGVIPNVLSYNALFRLVRQRL---------DYVIARNKYS 292
Query: 206 DIRMNTENRKNIL 218
D++ E R N L
Sbjct: 293 DVKRTQEQRVNGL 305
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD+ SY+ ++ F + EA RV +V+ G+KP+ ++YS L+ R K A
Sbjct: 445 GLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 161 LSVIDEMVNAGFAPSKET 178
+ DEM+ G P + T
Sbjct: 505 CDLFDEMLRVGLPPDEFT 522
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P + +Y +LI++ K A+ + + G+ PN +Y+ LVD A
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 161 LSVIDEMVNAGFAPS 175
V+ EM++ GF+PS
Sbjct: 400 YRVLKEMIDNGFSPS 414
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 50 LDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
LD+ N+S AE +K +V N +I G +LD A + F+ +
Sbjct: 176 LDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKK- 234
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI + KL+K + + + G++PN +SY+++++ K
Sbjct: 235 GCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEI 294
Query: 161 LSVIDEMVNAGFA 173
V+ EM G++
Sbjct: 295 SFVLTEMNKRGYS 307
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+LI F EA +VFE ++ KP+ +Y++++ H D + A S+ EMV +
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669
Query: 171 GF 172
GF
Sbjct: 670 GF 671
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + +D ++ ++ GL P++ SYN +I + + E S V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFELLRSMALK-GLEPNLISYNVVINGLCREGRMKEISFV 297
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G + ++Y+ L+ + + AL + EM+ G +PS
Sbjct: 298 LTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPS 344
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 26 EEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E+ P T Y ++ A C K + +++ + +P Y + +A+ I G
Sbjct: 3 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSAL---IDGFMRE 58
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D+D + + V S G+ ++ +YN LI+ K K +A+ + + +++LG KPN+ +
Sbjct: 59 GDIDEVLR-IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 117
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ LL++ + + AL ++DEM PS
Sbjct: 118 FCLLIEGYCREHNMGRALELLDEMEKRNLVPS 149
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G D+ RA + F+ + GL PD +Y+ +I + K + EA +F +
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S GV+P++ Y+ LV D + A+++ EM+ GFA +
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 499
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I YNAL+ K A ++F+ + G++P++++YS ++D + + + A
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 449
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVEALAKKF 205
S+ EM + G P + C +E D E N E L K F
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 3/145 (2%)
Query: 30 SPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
+P Y +++C K + ++ + LE R P ILG + + A
Sbjct: 217 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP--DAVTFGAFILGYSKTGKMTEA 274
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ F+ + GL P+ Y LI K EA +F HL +LGV P+ + S +
Sbjct: 275 AKYFDEM-LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 333
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
L N + AL V E+ G P
Sbjct: 334 GLLKNGRVQEALKVFSELKEKGLVP 358
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + +I+G A+ ++ A + + + S G+ PDI YNA+I K K EAS
Sbjct: 184 NVVVYSTLIMGYASEGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTY 242
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G+KP+A+++ + + A DEM++ G P+
Sbjct: 243 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++ A I + K K EA++ F+ ++ G+ PN Y++L++ H + A
Sbjct: 250 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 309
Query: 161 LSVIDEMVNAGFAPSKET 178
LS+ + G P +T
Sbjct: 310 LSIFRHLHALGVLPDVQT 327
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A + + +G GL P + + + L+ +F + K EA+RVFE + SLG+ P+ +
Sbjct: 636 DLTEASKLLDEMGE-LGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTL 694
Query: 145 SLLVDAHLTNRDQKAALSVIDEMV 168
LV+ +L + D + A ++I ++V
Sbjct: 695 IDLVNGNLNDTDSEDARNLIKQLV 718
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 47 FETLDSVYFQLENLSRA-----EPPYKSVA----AINCVILGCANIWDLDRAYQTF-EAV 96
+ T+ Y + EN++ A E P K V N ++ GC D+++A F E +
Sbjct: 433 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 492
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
F T S+N LI + K K EAS++F+ +++ + P+ ++Y+ ++D H
Sbjct: 493 QKGFATTL---SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 549
Query: 157 QKAALSVIDEM 167
+ A + EM
Sbjct: 550 MEEANLLFKEM 560
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ PD+ + +A I+ K + EA +VF L G+ P+ +YS L+ + +
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEM G AP+
Sbjct: 378 KAFELHDEMCLKGIAPN 394
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + FE + + G+ PD +Y +IYA K EA ++ + +V G+ +
Sbjct: 567 VDTVFALFEKMVAK-GVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 625
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LL+ A D A ++DEM G PS
Sbjct: 626 LLITALCKREDLTEASKLLDEMGELGLKPS 655
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P SY A+I K A+++ E + G+KPN + YS L+ + + + A
Sbjct: 146 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEAR 205
Query: 162 SVIDEMVNAGFAP 174
++D M +G AP
Sbjct: 206 RLLDGMSCSGVAP 218
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I A + +D++ FE + + G+ PDI +++ +I AF +L + +A F H++
Sbjct: 332 NTLINAYARLGMMDKSLLMFEDM-TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 390
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV P+ YS L+ RD A +I +M++ G P
Sbjct: 391 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 431
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + ++D+A+ F + G+ P++ +Y++LI K K+ +A RV
Sbjct: 153 VFSYNALIDGFSKEGEVDKAHDLFYKMEEQ-GIMPNVVTYSSLINGLCKTKEMDKAERVL 211
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+V GV+PN M+Y+ L+ + T+ K ++ V EM ++ P
Sbjct: 212 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP 256
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYNALI F K + +A +F + G+ PN ++YS L++ ++ A
Sbjct: 148 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 207
Query: 161 LSVIDEMVNAGFAPSKET 178
V+ +MV AG P+ T
Sbjct: 208 ERVLRQMVGAGVRPNNMT 225
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP A +C+I G N DL +A + + S P I + ++I K + E
Sbjct: 395 PP--DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE 452
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V + ++ G +PN ++++ LVD + + K A+ ++D M + G P
Sbjct: 453 GKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEP 502
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G + + + F+ + SS L PD+ + N+ + A K + EA +F+ +V
Sbjct: 227 NCLIHGYSTSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 285
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G KP+ +SY L+ + T ++ + MV G P +
Sbjct: 286 LKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 330
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EAVG S G+ PDI++YN L+ + K + +A +F ++ V ++SY++++
Sbjct: 487 EAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIIL 546
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESNDRVEALAK---K 204
R A + EM+ +G A S T V C +E+N +E L K
Sbjct: 547 HGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVK 606
Query: 205 FDI 207
FDI
Sbjct: 607 FDI 609
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD H +N LI A+ +L ++ +FE + GV P+ +++S ++ A A
Sbjct: 323 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 382
Query: 161 LSVIDEMVNAGFAP 174
+ + M++ G P
Sbjct: 383 MEKFNHMIDTGVPP 396
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G PD+++Y+ LI K K A+ +
Sbjct: 172 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GXXPDVYTYSVLINGLCKESKMDGANEL 230
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 231 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 290
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 291 KGDLKQAHDLIDEMSXK 307
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ G P+ +Y
Sbjct: 153 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTY 211
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 212 SVLINGLCKESKMDGANELFDEMLVKGLVPNXVT 245
>gi|343412512|emb|CCD21653.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 345
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 32 FTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
T+ L AC RKG + +Y Q+ S P + + ++ CA + D+ +A
Sbjct: 131 LTTYQLLFRACERKGQYHRAFHLYMQMREFSHIVP---DPSTYDTLLGFCAAVKDVAQAL 187
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
E + + G+ P++++YN L+ + + E RVF + G+KP +Y+ + A
Sbjct: 188 FFMEEMKNK-GVAPNVNTYNCLMNVLKEKEPYEETLRVFHRMTECGIKPTVRTYNTISSA 246
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
L + D + A + +EM G P
Sbjct: 247 ALKHGDYELAFQLFEEMKKKGVLP 270
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 44/115 (38%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C RA+ + + + PD +Y+ L+ +K +A E + + GV
Sbjct: 140 ACERKGQYHRAFHLYMQMREFSHIVPDPSTYDTLLGFCAAVKDVAQALFFMEEMKNKGVA 199
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
PN +Y+ L++ + L V M G P+ T + ++ D E
Sbjct: 200 PNVNTYNCLMNVLKEKEPYEETLRVFHRMTECGIKPTVRTYNTISSAALKHGDYE 254
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ RA F+ + G+TPD+ +Y +I + ++ EA +F + G+KP+ ++Y
Sbjct: 577 DMKRAQLVFDMLVER-GITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITY 635
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++++D H + + A+++ DEM+ G P
Sbjct: 636 TVVLDGHSKTNNLQDAINLYDEMIARGLQP 665
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++ D+ Y LI + K +A +FE + G++P+ ++Y++LV N +K AL
Sbjct: 414 MSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEAL 473
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
++D + G P+ T ++
Sbjct: 474 ELLDCIGTQGLKPNSATHNRI 494
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P I S N L+ + K A ++ HL LG+ PN +Y + + A + + A
Sbjct: 187 GFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEA 246
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V EM AG P+ T
Sbjct: 247 VDVFREMEEAGVNPNAVT 264
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHL--------VSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +Y+A++ + K T +A +F L ++L V+PN + Y L+ A + D
Sbjct: 519 LENYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDM 578
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRVE 199
K A V D +V G P T + R C+RE + ND E
Sbjct: 579 KRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKE 625
>gi|297811553|ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319497|gb|EFH49919.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F+A+ + G P + SY AL+ A K K EA RV+ H++
Sbjct: 471 NAVLVACSKASETTAAIQIFKAMVDN-GEKPTVISYGALLSALEKGKLYDEAFRVWNHMI 529
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAAL--SVIDEMVNAGFAPSKETLKKVRRRCVR 188
+G++PN +Y+ + A + QK L +++ EM + G PS T V C R
Sbjct: 530 KVGIEPNLYAYTTM--ASVLTGQQKFNLLDTLLKEMASKGIEPSVVTYNAVISGCAR 584
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F+ +V G KP +SY L+ A + A
Sbjct: 462 GLKPQSRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEA 521
Query: 161 LSVIDEMVNAGFAPS 175
V + M+ G P+
Sbjct: 522 FRVWNHMIKVGIEPN 536
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G +PN +SY L L+ A + +
Sbjct: 394 NHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASRRGIWRWGVR 453
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P V C +
Sbjct: 454 LLNKMEDKGLKPQSRHWNAVLVACSK 479
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ YN+L+ A K EA ++ + G+ PN ++Y+ L+ ++ + AL
Sbjct: 190 IGPNLFIYNSLLGAM-KQSSVGEAEKILSDMEEEGIVPNIVTYNTLMVIYMEKGEFHKAL 248
Query: 162 SVIDEMVNAGFAPSKET 178
++D + GF P+ T
Sbjct: 249 GILDLVKEKGFEPNPIT 265
>gi|154275110|ref|XP_001538406.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414846|gb|EDN10208.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1342
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + + + D R F++ + +G + N LIY + + ++A +
Sbjct: 445 SEEAYQIALTAFSRLGDFRRVTDLFKSYVNHYGQPRKLRLVNPLIYVNAAVGRVYQARKQ 504
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L S + P+ S+++++ AH RD+ ALS EM+ G P TL +
Sbjct: 505 LERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDSHTLGILMGMFA 564
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ + ES LA+ +DI++N
Sbjct: 565 KDGNVESVMDFLQLARGYDIQLN 587
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ + +N +I A + + +A + E + S F L+PD+ S+N ++ A K + A
Sbjct: 480 RKLRLVNPLIYVNAAVGRVYQARKQLERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALS 539
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
F+ +++ G+KP++ + +L+
Sbjct: 540 TFQEMIATGLKPDSHTLGILM 560
>gi|429854928|gb|ELA29909.1| glutathione s-transferase [Colletotrichum gloeosporioides Nara gc5]
Length = 835
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 69 SVAAINCVILGCANIWD--LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+++ +N I G +W +D + E S GL PDI+++N L+ + K K EA
Sbjct: 548 AMSNVNAAISGL--LWRNRMDGVKKVLE-WASERGLQPDIYTFNMLLSSMLKQGKHEEAD 604
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTN------RDQKAAL-SVIDEMVNAGFAPSKETL 179
R+ + + GVKP+ ++++++D T+ +QKA + +V EM G P++ET
Sbjct: 605 RILVSMKAAGVKPDGATFTIIMDTAFTDISQQSPEEQKATIGNVFREMKACGIDPNQETY 664
Query: 180 KKVRRRCVREMD 191
K+ +R+ D
Sbjct: 665 AKMIHSLIRQGD 676
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 19 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSY 77
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 78 STLLTMYVENKKFLEALSVFSEM 100
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 138 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 197
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 198 ANNLIQEMQSRGIEPNSIT 216
>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
citrodora]
Length = 435
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 9 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 65
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 66 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 124
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 125 STLLTMYVENKKFIEALSVFSEM 147
>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
Length = 294
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 80 CANIWDLDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C+ I +L + + EA + S G+ P++ YN L+ + + K +A +VF+ +VS
Sbjct: 105 CSIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVS 164
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+G++PN ++YS LV+ + LS+ EM++ G PS
Sbjct: 165 VGIEPNVVTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPS 205
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 101 GLTPDIHSYNALIYA-------------------FGKLKKTFEASRVFEHLVSLGVKPNA 141
G+ PD +YN LIY K+ + EA +F+ VS+GV PN
Sbjct: 77 GVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEAQDIFDLTVSIGVHPNV 136
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
M Y+ L+D + K AL V D MV+ G P+ T
Sbjct: 137 MVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVT 173
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P++ +Y+ +I F K +A +F +V G+ PN ++Y+ +V A R A +
Sbjct: 9 SPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEA 68
Query: 163 VIDEMVNAGFAPSKET 178
++ MV G P + T
Sbjct: 69 ILRPMVGKGVRPDRMT 84
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ +V N ++ G + + +A + F+A+ S G+ P++ +Y+ L+ + K+ + E
Sbjct: 133 HPNVMVYNTLMDGYCLVHKMKKALKVFDAM-VSVGIEPNVVTYSTLVNGYCKIGRINEGL 191
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+F ++ G++P+A+S K A + + +G PS T +
Sbjct: 192 SLFTEMLHKGIEPSAISRV------------KEAKGLFASISGSGLVPSVVTYNVMMTNL 239
Query: 187 VREMDEESNDRV 198
++E E DR+
Sbjct: 240 IKEGLVEEADRM 251
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL--VDAHLTN-RDQ 157
G++P++ +YN++++A K + A + +V GV+P+ M+Y+ L VD+ + ++
Sbjct: 42 GISPNLVTYNSVVHALCKARAVDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEA 101
Query: 158 KAALSVIDEMVNAG 171
+ S+I+ + G
Sbjct: 102 VRSCSIINNLCKVG 115
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN + ++ L+D H N A+ + +M++ P
Sbjct: 235 FDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S+L++ A + DEM+ G P+
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPN 246
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y ALI + ++ +A ++ ++++
Sbjct: 323 LIDGCCKEGDLDTAFEHRKQMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + ++ + S L PD+ +YN LIY K + + + + G+KP+ ++Y+
Sbjct: 263 VDLAMEIYKQMLSQ-SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYT 321
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+D D A +M+
Sbjct: 322 TLIDGCCKEGDLDTAFEHRKQMIQ 345
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 34 SLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQT 92
S PL+ A ++ F ++ VY ++ + R P ++ N VI G + L++A
Sbjct: 197 SCNPLLSALVKENEFGGVEFVYKEM--IRRKISP--NLITFNTVINGLCKVGKLNKAGDV 252
Query: 93 FEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ + +G P++ +YN LI + G++ K ++A + + +V V PN++++++L+D
Sbjct: 253 VDDM-KVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + AAL V +EM + G P+ T
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVT 340
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++ A+ + V G P+ +YN LI F + K E +
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GVK + ++Y++L+ A ++ K A +IDEM++ G PS T
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLT 515
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F L + + ENLS A ++ +V N ++ G N L+ A + +
Sbjct: 306 FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEML 365
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS L P++ +YNALI + K K EA +F+++ G+ PN ++++ L+ +
Sbjct: 366 SS-NLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKM 424
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A + M+ GF P+ T
Sbjct: 425 EEAFLLQKVMLEKGFLPNAST 445
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P+ ++N LI F K + A +VFE + S G+KP ++Y+ LV+ A
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAK 358
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++DEM+++ P+ T + C +++ EE+ + + + K+
Sbjct: 359 VLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQ 402
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I+G ++ + G+ D +YN LI A+ + K+ +A+R+ + ++
Sbjct: 447 NCLIVGFCREGKMEEVKNLLNEMQCR-GVKADTVTYNILISAWCEKKEPKKAARLIDEML 505
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
G+KP+ ++Y++L++ + + +AAL++ +M G
Sbjct: 506 DKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKA 159
G P ++N LI FG + + EA ++ E ++ G VKPN +Y++L+ A T + +
Sbjct: 143 GCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEE 202
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENR 214
A +V+ +MVN+G P T + R + + ++ +R+ ++++ ++ R
Sbjct: 203 AWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNER 257
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +I D D + + FG+ PD+ +Y+ ++ A+ +F+ +V
Sbjct: 295 NSLIKGYLDITDTDGVEEALTLM-EEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMV 353
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
++P+ +YS+L ++ A ++++ M G
Sbjct: 354 KAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGL 392
>gi|302780245|ref|XP_002971897.1| hypothetical protein SELMODRAFT_52692 [Selaginella moellendorffii]
gi|300160196|gb|EFJ26814.1| hypothetical protein SELMODRAFT_52692 [Selaginella moellendorffii]
Length = 487
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 50 LDSVYFQLENLSRAEPPYK---SVAAINCVILGCANIWDLDRA---YQTFEAVGSSFGLT 103
LD+ + LE++ P K S+ +N +I CAN D RA + + +V G
Sbjct: 71 LDAAFQILESMDLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDEG-- 128
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +YN LI + + + EA +V E + G++ N +S++ LV A + +D AAL +
Sbjct: 129 PSLVTYNMLIKGYARSENPLEALKVREEMQLRGMQLNKLSWNSLVMACVRGQDMDAALEI 188
Query: 164 IDEMVNAG 171
++EM AG
Sbjct: 189 LEEMKEAG 196
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A NC+I G L +A + + ++ G+ DI ++++I KL + +A +F+
Sbjct: 466 AYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P+A+ YS+L+D + + AL V D MV+AG P+
Sbjct: 525 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD Y+ L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 529 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 588
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 589 LSLFREMLQRGIKPS 603
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 389 GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 448
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G AP K
Sbjct: 449 MEKFNQMIDQGVAPDK 464
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V A N VI G D+++A F+ + G+ PD+ +YN++++A K + +A
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAF 276
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CV 187
+V+ V PN +Y+ L+ + + K A+ V EM P TL + C
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336
Query: 188 REMDEESNDRVEALAKK--------FDIRMNTENRKNILFNL 221
+E+ D + +A K ++I +N K L ++
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +++A + F+A+ S+ G+ P++ Y L+ + K+ + E +F ++ G+KP+ +
Sbjct: 547 VGKMEKALRVFDAMVSA-GIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTI 605
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-----RCVRE 189
YS+++D A EM +G A T V R RC E
Sbjct: 606 LYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDE 657
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNRDQ 157
G PD+ SY+ L+ + K+ +A + + G PN ++Y+ ++D D
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 235
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A + EMV G P T V
Sbjct: 236 NKACDLFKEMVQRGIPPDLVTYNSV 260
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P++ +YN +I F K +A +F+ +V G+ P+ ++Y+ +V A R A +
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN P+ T
Sbjct: 276 FLRQMVNKRVLPNNWT 291
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SYN ++ + + + +F+ ++ G+ P+ ++++L+ A+ A
Sbjct: 354 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 413
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + +EM + G P T + V
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTV 435
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F+ + + PD+ + + L+ + K K EA VF+ +
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 351
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ SY+++++ + T + D M+ G AP
Sbjct: 352 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A NC+I G L +A + + ++ G+ DI ++++I KL + +A +F+
Sbjct: 479 AYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 537
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P+A+ YS+L+D + + AL V D MV+AG P+
Sbjct: 538 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 581
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD Y+ L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 542 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 601
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 602 LSLFREMLQRGIKPS 616
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 402 GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 461
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G AP K
Sbjct: 462 MEKFNQMIDQGVAPDK 477
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V A N VI G D+++A F+ + G+ PD+ +YN++++A K + +A
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAF 289
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+V+ V PN +Y+ L+ + + K A+ V EM P TL
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 340
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +++A + F+A+ S+ G+ P++ Y L+ + K+ + E +F ++ G+KP+ +
Sbjct: 560 VGKMEKALRVFDAMVSA-GIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTI 618
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
YS+++D A EM +G A
Sbjct: 619 LYSIIIDGLFQAGRTVPAKMKFHEMTESGIA 649
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNRDQ 157
G PD+ SY+ L+ + K+ +A + + G PN ++Y+ ++D D
Sbjct: 189 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 248
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A + EMV G P T V
Sbjct: 249 NKACDLFKEMVQRGIPPDLVTYNSV 273
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P++ +YN +I F K +A +F+ +V G+ P+ ++Y+ +V A R A +
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN P+ T
Sbjct: 289 FLRQMVNKRVLPNNWT 304
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SYN ++ + + + +F+ ++ G+ P+ ++++L+ A+ A
Sbjct: 367 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 426
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + +EM + G P T + V
Sbjct: 427 MIIFNEMRDHGVKPDVVTYRTV 448
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F+ + + PD+ + + L+ + K K EA VF+ +
Sbjct: 306 NNLIYGYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 364
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ SY+++++ + T + D M+ G AP
Sbjct: 365 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 405
>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rubella]
Length = 440
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +LDR F+ V G +P +YN LI F KL + EAS +FE ++
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GV+PN +Y+ L+D K AL +++ M+ P+ T
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R SV NC++ LD+A++ FE + PD+ S+N +I K
Sbjct: 521 RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGD 579
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
A + + G+ P+ +YS L++ L A+S D+MV++GF P
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639
Query: 182 VRRRCVREMDEESNDRVEALAKKF---DIRMNTE 212
V + C+ + + D++ L KK DI ++ E
Sbjct: 640 VLKYCISQGE---TDKLTELVKKLVDKDIVLDKE 670
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+LD + E + R + + V + N +I G D+ A + S GL+PD+ +
Sbjct: 544 SLDQAWRLFEEMQR-DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM-SRAGLSPDLFT 601
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
Y+ LI F KL EA F+ +V G +P+A
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I A + +D++ FE + + G+ PDI +++ +I AF +L + +A F H++
Sbjct: 403 NTLINAYARLGMMDKSLLMFEDM-TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV P+ YS L+ RD A +I +M++ G P
Sbjct: 462 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 502
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + ++D+A+ F + G+ P++ +Y++LI K K+ +A RV
Sbjct: 224 VFSYNALIDGFSKEGEVDKAHDLFYKMEEQ-GIMPNVVTYSSLINGLCKTKEMDKAERVL 282
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+V GV+PN M+Y+ L+ + T+ K ++ V EM ++ P
Sbjct: 283 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVP 327
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYNALI F K + +A +F + G+ PN ++YS L++ ++ A
Sbjct: 219 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 278
Query: 161 LSVIDEMVNAGFAPSKET 178
V+ +MV AG P+ T
Sbjct: 279 ERVLRQMVGAGVRPNNMT 296
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP A +C+I G N DL +A + + S P I + ++I K + E
Sbjct: 466 PP--DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE 523
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V + ++ G +PN ++++ LVD + + K A+ ++D M + G P
Sbjct: 524 GKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEP 573
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G + + + F+ + SS L PD+ + N+ + A K + EA +F+ +V
Sbjct: 298 NCLIHGYSTSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 356
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G KP+ +SY L+ + T ++ + MV G P +
Sbjct: 357 LKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 401
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EAVG S G+ PDI++YN L+ + K + +A +F ++ V ++SY++++
Sbjct: 558 EAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIIL 617
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESNDRVEALAK---K 204
R A + EM+ +G A S T V C +E+N +E L K
Sbjct: 618 HGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVK 677
Query: 205 FDI 207
FDI
Sbjct: 678 FDI 680
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD H +N LI A+ +L ++ +FE + GV P+ +++S ++ A A
Sbjct: 394 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 453
Query: 161 LSVIDEMVNAGFAP 174
+ + M++ G P
Sbjct: 454 MEKFNHMIDTGVPP 467
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+ + + + P V N + L + D +A F + S G TPD+ +YNA+I F
Sbjct: 4 LQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVF 61
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
GK K EA + + + GV PN SYS L+ ++ N+ ALSV EM
Sbjct: 62 GKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 112
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 150 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 209
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 210 ANNLIQEMQSRGIEPNSIT 228
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + + +I G +LDRA+Q A G++PD +Y++LI + ++ EA +F
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQ-MNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +++ + P+ +Y+ L++ + D AL++ DEM+ GF P T
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 8/171 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAE-PPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ S+KGF +D Y + + R+ PP ++ N ++ G ++ A +
Sbjct: 384 LINGFSQKGF--MDEAYRIWDEMIRSGFPP--TIVTYNALLNGHCVSGRMEEAIGLLRGM 439
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
GL+PD+ SY+ +I F + ++ A ++ +V GV P+A++YS L+ R
Sbjct: 440 EGK-GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRR 498
Query: 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD--EESNDRVEALAKKF 205
A + EM+N P + T + +E D E N E + K F
Sbjct: 499 LNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF 549
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +Y +LI K A F+ + G++PN ++Y+ L++ A
Sbjct: 338 GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEA 397
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ DEM+ +GF P+ T + CV EE+ + + K
Sbjct: 398 YRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGK 442
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G +L+ + FE + + L P++ +YN +I A+ KLK+ EA ++
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCL-PNVVTYNTVIGAYCKLKRIDEAFKL 260
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G++PN ++Y+++++ + V+ EM GFAP T
Sbjct: 261 LRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVT 310
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
ALI F EA +VFE ++ KPN Y++++ H + + A + EMV+
Sbjct: 608 ALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDF 667
Query: 171 GFAPSKETLKKVRRRCVRE-MDEESN 195
GF P T+ + + E MDE+ N
Sbjct: 668 GFIPHTVTIIALVKALYSEGMDEQLN 693
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ L YF + S A + V+ C+ + +++A + + G P +
Sbjct: 118 FQCLKDTYFMCNS---------SSAVFDLVVKSCSYLNFIEKALNIVD-LAKLNGFMPGV 167
Query: 107 HSYNALIYAFGKLKK-TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
SYNA++ + + +K A +V+ +++ GV N SY++L+ + + L +
Sbjct: 168 LSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFE 227
Query: 166 EM 167
EM
Sbjct: 228 EM 229
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 27 EIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E P +Y +V C ET++++ Q+E E ++ V+ G A I
Sbjct: 116 ENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE----EGFQGNLGLYTTVLNGFAEIR 171
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D ++ F + + GL+P +Y ++ F K +A + E + GV PN M Y
Sbjct: 172 DEEKCLSFFHRL-KACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 230
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++++D + D AA V ++MV+AG P
Sbjct: 231 AMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP + Y +V K ++ E P K + A+ ++ G A D
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAM--IMDGYARGGDFTA 245
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ +E + S+ GL PDI YN L++AF K + +A V E++ + + P +Y+ ++
Sbjct: 246 AFKVWEDMVSA-GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSIL 304
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D ++ + + AL V D + AG P
Sbjct: 305 DGYVKGGNIQKALEVFDRIKTAGLRPG 331
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G A D+++A+ F+ + L DI +Y AL+ A K A+ VF+ + G+K
Sbjct: 376 GYARAGDVEKAFGMFQRMKKE-NLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLK 434
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
N ++Y ++D + A ++++M GF + C R D E
Sbjct: 435 HNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTET 494
Query: 199 EALAKKFDIRMN 210
A+ ++ + +N
Sbjct: 495 LAVMREKKLEVN 506
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D LEN+ A ++ ++ G ++ +A + F+ + ++ GL P + SY
Sbjct: 278 MDKALGVLENI-EANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTA-GLRPGVVSY 335
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
N+L+ K ++ A + +++ GV PN SY+ L + + D + A + M
Sbjct: 336 NSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 393
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + Y L+ + + A FE + + +KPN Y+ L+ A+ RD + A++
Sbjct: 15 PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 74
Query: 164 IDEMVNAGF 172
+EM++ G
Sbjct: 75 TEEMLSQGI 83
>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g19290
gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA D+++A+ + + G+ P+I +YNALI KL A R+ L
Sbjct: 761 LIHGCAIAGDINKAFTLRDEMALK-GIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQK 819
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G+ PNA++Y+ L+D + + + A+ + ++M+ G
Sbjct: 820 GITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLV 857
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
E +V N ++ + ++ A +E + S G+TP + SYN LI K
Sbjct: 422 VEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSK-GITPSLVSYNNLILGHCKKGCM 480
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+A + + ++ G+KPNA++Y+LL+D D + A V ++M+ A AP+ T V
Sbjct: 481 DKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTV 540
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 28 IFSPFTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
I+ +L+ ++ AC ++G FE ++ + + ++ AA + ++ DL
Sbjct: 216 IYGDCYTLHVVMRACMKEGKFEEVEKFFKE----AKGRGLEVDAAAYSILVQAVCRRLDL 271
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ A + + + FG P +Y A+I A K EA R+ + +VS+G+ N +
Sbjct: 272 NLACELLKEM-REFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRS 330
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
L+ + D AL + DE+V G P + C + D E
Sbjct: 331 LMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDME 377
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +Y+ALI F K+ AS+ F L+ +G+ PN + Y+ ++ + + +AA
Sbjct: 634 GMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAA 693
Query: 161 LSVIDEMV 168
L++ EM+
Sbjct: 694 LNLHQEMI 701
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLEN-LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L++ +KG +D Y L++ L R P + +I G D +RA+ FE +
Sbjct: 470 LILGHCKKG--CMDKAYSMLKSILERGLKP--NAVTYTLLIDGFFKKGDSERAFVVFEQM 525
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
++ + P H++N +I GK + E + + G +++Y+ ++D
Sbjct: 526 MAA-NIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGA 584
Query: 157 QKAALSVIDEMVNAGFAP 174
+AL EM +G +P
Sbjct: 585 VDSALLAYREMCESGISP 602
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++ + ++ A K K E + F+ G++ +A +YS+LV A D A
Sbjct: 215 GIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLA 274
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
++ EM G+ PSK T V CV++ + VEAL K
Sbjct: 275 CELLKEMREFGWVPSKGTYTAVIVACVKQ-----GNFVEALRLK 313
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD+ +Y +LI K K A + + G+K + ++YS L+D D ++A
Sbjct: 599 GISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESA 658
Query: 161 LSVIDEMVNAGFAPS 175
E+++ G P+
Sbjct: 659 SKFFTELLDIGLTPN 673
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
++VAC ++G ++++ + E +S P +V ++ G + D++ A Q F+ V
Sbjct: 296 VIVACVKQG-NFVEALRLKDEMVSVGLP--MNVIVTRSLMKGYCVLGDVNLALQLFDEVV 352
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PD+ ++ LI K+ +A ++ + +G++PN + L++
Sbjct: 353 EG-GVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLL 411
Query: 158 KAALSVIDEMVNAGFA 173
+ A + DE V G
Sbjct: 412 EHAYGLFDEAVEHGIT 427
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ R EP + + ++L N D+D A + F + GL P++ Y L+
Sbjct: 374 FKTMRRHRVEP---DLCSYTTMLLAYVNASDMDGAEKFFRRIKED-GLRPNVVVYGTLMK 429
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ KL + RV+E + GV+PN ++ ++D H N D A+ +EM G+ P
Sbjct: 430 GYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPP 489
Query: 175 SKE 177
K+
Sbjct: 490 DKK 492
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
GL PD+ SY+ LI A+GK ++ EAS VFE ++ G++P SY++L+DA
Sbjct: 311 GLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDA 360
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G+ ++N+L+ G K E S +++ + G+KP+ +SYSLL+ A+ R +
Sbjct: 276 SERGIPQSTVTFNSLMSFEGDYK---EVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARRE 332
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A +V +EM++AG P++++
Sbjct: 333 EEASAVFEEMLDAGIRPTRKS 353
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V F+ S+ EP ++ N +I G ++ + F + S G+ PD+ +YN +
Sbjct: 282 VVFEYLQRSKMEP---TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTM 337
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F + EA +F+ + G PN+ Y+ L+ A L + D++A+ +I EM + GF
Sbjct: 338 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 397
Query: 173 APSKETLKKV 182
A T+ V
Sbjct: 398 AGDASTIGLV 407
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q FE + S PD+ +YN LI F K K+ E VF + G+ N ++Y+
Sbjct: 172 LDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 230
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L+ D A + EMV+ G P+
Sbjct: 231 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 260
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S PP ++ N ++ G L++A FE + S + P I++YN +I
Sbjct: 251 EMVSDGVPP--NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 307
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K + +F +L GVKP+ ++Y+ ++ ++ A ++ EM G P+
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 367
Query: 178 TLKKVRRRCVREMDEESN 195
+ R +R+ D E++
Sbjct: 368 CYNTLIRARLRDGDREAS 385
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ EP V N +I G +D A F+ + + G+ P++ +Y++LI
Sbjct: 45 GKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYG 100
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ +ASR+ ++ + P+ ++S L+DA + A + DEMV PS
Sbjct: 101 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V N +I G ++ + F + S GL + +YN LI + A
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVTYNILIQGLFQAGDCDMAQ 246
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ +VS GV PN M+Y+ L+D N + A+ V + + + P+
Sbjct: 247 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 295
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +++ALI AF K K EA ++++ +V + P+ ++YS L++ + A
Sbjct: 117 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 176
Query: 162 SVIDEMVNAGFAP 174
+ + MV+ P
Sbjct: 177 QMFEFMVSKHCFP 189
>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
salviifolia]
Length = 378
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 3 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 61
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 62 STLLSMYVENKKFLEALSVFSEM 84
>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 426
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 53 VYFQLENLSRAEPPYKSV-AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
++ +LEN S +P S + INC+ D+D A+ F+ + GL+PD+ +Y+
Sbjct: 558 IFEELEN-SSCKPDIISFNSLINCL----GKNGDIDEAHMRFKEMREE-GLSPDVVTYST 611
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI FGK K A R+F+ +++ G PN ++Y++L+D + A+ + ++ G
Sbjct: 612 LIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 671
Query: 172 FAPSKETLKKVRR 184
P T + R
Sbjct: 672 LTPDSITYAVLER 684
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL Y+ + G S PDI SYN LI +FG+ + EA ++FE L + KP+ +S+
Sbjct: 519 DLHDLYEKMKQDGPS----PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 574
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L++ N D A EM G +P
Sbjct: 575 NSLINCLGKNGDIDEAHMRFKEMREEGLSP 604
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D+ Y F+ + PD ++Y +I GK+ K E+ +F+ + G PN ++Y
Sbjct: 307 EVDQVYMVFKDMKRKH-CEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAY 365
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ ++ A NR + + +MV P+ T + V E D V ++ K
Sbjct: 366 NTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNK 425
Query: 205 F 205
F
Sbjct: 426 F 426
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++ D YN ++ A GKLKKT + ++E + G P+ SY++L+ + + A+
Sbjct: 497 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAV 556
Query: 162 SVIDEMVNAGFAP 174
+ +E+ N+ P
Sbjct: 557 KIFEELENSSCKP 569
>gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 737
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 90 YQTFEAVGSSF----GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+QT+ V S G P + +YN L+ F + + F+A R+F + + G PN +SY+
Sbjct: 90 FQTWSLVKSLIQIKAGFVPSLVNYNRLMDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYT 149
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
L++ + + + A+ V DEM+ +G P+ T + R +R D ES E + K +
Sbjct: 150 TLINGYCSVGGIRDAMKVFDEMLESGLEPNSMTYSVLIRGFLRGRDFESGR--ELMCKLW 207
Query: 206 DIRMNTENRKNI 217
+ RM E+ ++
Sbjct: 208 E-RMKMEDELSV 218
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +I G + +D A F V GL P + +YN LI KLK+ +A VF
Sbjct: 431 VVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRCLYKLKRPNDAFEVF 490
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G+ P++ +Y+++V+ L DQ
Sbjct: 491 NNMAGDGITPDSTTYTVIVEG-LCECDQ 517
>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + ++ A C+I G + I +LD AYQ ++ + S L P++++Y ALI F K
Sbjct: 103 RKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHL-PNVYTYAALINGFCKRGM 161
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
A F ++ +G+ PN+ Y+ ++D H + A+ EM F
Sbjct: 162 LERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKESF 212
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 85 DLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPN 140
++D A + F E SF L DI +Y +I G+L K E V E +V G+ P+
Sbjct: 196 NIDVAMKYFSEMRKESFRL--DIVAYGVVISGLVNNGRLDKVLE---VMEDMVRNGLAPD 250
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + L+ AH + KAA V E++N GF P T+
Sbjct: 251 KVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPDAVTI 289
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R E + A VI G N LD+ + E + + GL PD L++A K
Sbjct: 208 RKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRN-GLAPDKVVLTTLMHAHFKAGN 266
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
T A V+ L++ G +P+A++ S L+D
Sbjct: 267 TKAAYGVYRELLNRGFEPDAVTISSLIDG 295
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 68 KSVAAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+SV ++N +I C N +D A++ F + G PD ++Y LI KL KTFEA
Sbjct: 153 QSVVSLNVLIKALCKNSGTIDAAFEIFREMPKR-GCDPDSYTYGTLINGLCKLGKTFEAK 211
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ + + G P+ ++YS L+ + A+ + D+M P+
Sbjct: 212 ELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPN 260
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV +C++ G ++D A F+ + + P++ +Y++L+ K + EA +
Sbjct: 225 SVVTYSCLMHGLCQAGNVDEAMGLFDKMKKK-AIEPNVFTYSSLMDGLCKNGGSLEAMEL 283
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
E +V KPN ++YS L++ A+ +D M G P K+
Sbjct: 284 LEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKI 337
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +Y+ LI K K EA + + G+KP+A Y +++ R + A +
Sbjct: 294 PNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATY 353
Query: 164 IDEMVNAGFAPSKET 178
+DEMV +P++ T
Sbjct: 354 LDEMVLGQISPNRVT 368
>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 26 EEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E F P Y +V C K F ++SV ++E + PP +V V+
Sbjct: 285 EHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEME--EKGCPP--NVVTYTIVMHALGKG 340
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++ +A + +E + S PD Y++LIY K + +A VFE + G P+ ++
Sbjct: 341 KEISKALEVYEKMKGS-SCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLT 399
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALA 202
Y+ ++ A + ++ AL ++ +M + P T + + C R N+R++ L+
Sbjct: 400 YNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCR------NNRMKVLS 452
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 20 DSIIDMEEIFSPFTSLYPLVVACSRKG----FETLDSVYFQLENLSRAEPPY-------- 67
+S++D+ F ++ LV R G T+ V +L SR +
Sbjct: 157 NSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMER 216
Query: 68 ----KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
K A+N ++ ++ A F S L P H++N LI+ + K +K
Sbjct: 217 FGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNP--HTFNVLIHGWCKARKMD 274
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A + + G P+ +SY+ +V+A+ +D + SV++EM G P+
Sbjct: 275 NALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPN 326
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 139 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 198
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 199 ANNLIQEMQSRGIEPNSIT 217
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 27 EIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E P +Y +V C ET++++ Q+E E ++ V+ G A I
Sbjct: 230 ENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE----EGFQGNLGLYTTVLNGFAEIR 285
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D ++ F + + GL+P +Y ++ F K +A + E + GV PN M Y
Sbjct: 286 DEEKCLSFFHRL-KACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 344
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++++D + D AA V ++MV+AG P
Sbjct: 345 AMIMDGYARGGDFTAAFKVWEDMVSAGLKP 374
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP + Y +V K ++ E P K + A+ ++ G A D
Sbjct: 302 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAM--IMDGYARGGDFTA 359
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ +E + S+ GL PDI +YN L++AF K + +A V E++ + + P +Y+ ++
Sbjct: 360 AFKVWEDMVSA-GLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSIL 418
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D ++ + AL V D + AG P
Sbjct: 419 DGYVKGGHIQKALEVFDRIKTAGLRPG 445
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D LEN+ +A ++ ++ G + +A + F+ + ++ GL P + SY
Sbjct: 392 MDKALGVLENI-QANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTA-GLRPGVVSY 449
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
N+L+ K ++ A + + +++ GV PN SY+ L + + D + A + M
Sbjct: 450 NSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 507
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G A D+++A+ F+ + L DI +Y AL+ A K A VF+ + G+K
Sbjct: 490 GYARAGDVEKAFGMFQRMKKE-NLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLK 548
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
N ++Y ++D + A ++ +M GF + C R D E
Sbjct: 549 HNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTET 608
Query: 199 EALAKKFDIRMNTENRKNIL 218
A+ ++ + +N ++
Sbjct: 609 LAVMREKKLEVNARTYTTLI 628
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + Y L+ + + A FE + + +KPN Y+ L+ A+ RD + A++
Sbjct: 129 PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 188
Query: 164 IDEMVNAGF 172
+EM++ G
Sbjct: 189 TEEMLSQGI 197
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +D AY E + + L P+ ++YN LI K KK EAS + ++++
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACL-PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM 573
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GVKP ++Y++L+ L + AL V + MV+ G+ P
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L R P S+ N +I G + DL+ AY+ + + GL PD +Y+ I K
Sbjct: 431 LERKLSP--SLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDTLCKE 487
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA +F+ + + GVK N + Y+ L+D + A S+++ M+N P+ T
Sbjct: 488 GRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYT 546
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +Y LIYA + EA +F + G +PN +Y++L+D A +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356
Query: 164 IDEMVNAGFAPSKET 178
+ EM G PS T
Sbjct: 357 LSEMSEKGLIPSVVT 371
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+N + + A + FE + G T D+ Y ALI F + ++ EA + H+ G+ P+
Sbjct: 713 SNTLEYEIALKLFEKM-VEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPS 771
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
Y+ L+D A+ ++D MV G P E+ K
Sbjct: 772 EDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYK 811
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++H+Y LI K K EA ++ + G+ P+ ++Y+ L+D + A
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388
Query: 161 LSVIDEMVNAGFAPSKET 178
++D M + P+ T
Sbjct: 389 FEILDLMESNSCGPNTRT 406
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ P + +Y LI K A +VF H+VSLG +P+ +Y+ + A+ + +
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631
Query: 159 AALSVIDEMVNAGFAP 174
VI +M G P
Sbjct: 632 EVDDVIAKMNEEGILP 647
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F + S G PD+ +Y A ++A+ E V + G+ P+ ++Y++
Sbjct: 596 DHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654
Query: 147 LVDAH----LTNRDQKAALSVIDEMVNAGFAPS 175
L+D + LT+R A + MV+ G PS
Sbjct: 655 LIDGYARLGLTHR----AFDFLKCMVDTGCKPS 683
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P+I+++NA++ + K+ EA +V G+ P+ +Y+ L+ H N+ A
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249
Query: 162 SVIDEMVNAG 171
V M G
Sbjct: 250 EVFLIMPQKG 259
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P + +YNALI + K +A + + + S PN +Y+ L+ R
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201
A++++++M+ +PS T + + D ES R+ +L
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464
>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
pusilla]
Length = 381
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 805
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 44 RKG-FETLDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KG F+T V Q+ EN A+ +A N +I G + D A + + G
Sbjct: 642 KKGYFQTARGVLDQMFENFCAAD-----IATYNVIIQGLGKMGRADLASAVLDRLTKQGG 696
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
DI YN LI A GK + EA+++F+H+ S G+ P+ +SY+ +++ + K A
Sbjct: 697 YL-DIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAY 755
Query: 162 SVIDEMVNAGFAPSKET 178
+ M++AG P+ T
Sbjct: 756 KYLKAMLDAGCLPNHVT 772
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC + +D A + + + + G PD YN L+ K +K EA ++FE +V
Sbjct: 330 LIQGCCKSYRMDDAMRIYGEMQYN-GFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQE 388
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV+ + +Y++L+D N +A ++ ++ G
Sbjct: 389 GVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKG 424
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 74 NCVILGCANIWDLDRAYQTFEAV-------GSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
N I G DLD A F+ + GSSFG PDI +YN+LI+ K +A
Sbjct: 252 NICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFG--PDICTYNSLIHVLCLFGKAKDAL 309
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V++ L G +P+ +Y +L+ + A+ + EM GF P
Sbjct: 310 IVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVP 357
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
Length = 689
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA D+++A+ + + G+ P+I +YNALI KL A R+ L
Sbjct: 546 LIHGCAIAGDINKAFTLRDEMALK-GIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQK 604
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G+ PNA++Y+ L+D + + + A+ + ++M+ G
Sbjct: 605 GITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLV 642
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DL+ ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLNEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 295 KGDLKQAHDLIDEMSMK 311
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 249
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K A+ +
Sbjct: 170 TAVSFNTLMNGYIRLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDYANEL 228
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F ++ G+ PN ++++ L+D H N A+ + +M++ +P T + +
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ D ++ ++ K
Sbjct: 289 KGDLKQAQDLIDEMSMK 305
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ A F+A+ + +GL P S+N L+ + +L E R+ + + GV+P+ +Y
Sbjct: 151 EIKLAQSVFDAI-TKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTY 209
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + +EM++ G P+ T
Sbjct: 210 SVLINGLCKESKMDYANELFNEMLDNGLVPNGVT 243
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAF 331
Query: 162 SVIDEMV 168
M+
Sbjct: 332 EYRKRMI 338
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y ALI + ++ +A ++ ++S+G+KP +Y+++++ D ++ EM
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEM 407
Query: 168 VNAGFAPS 175
G+ PS
Sbjct: 408 QRDGYVPS 415
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R + + +++ +R +P VA C+++G N +DR E + + G
Sbjct: 414 CKRGKMDMAMECFEEMQE-ARCQP---DVATYTCLLVGYGNAKRMDRVTAVLEEM-TQKG 468
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAA 160
PD +YNALI K +A+R+++ ++ G++P +Y++++ ++ L +R+
Sbjct: 469 CPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMG 528
Query: 161 LSVIDEMVNAGFAP 174
+V +EM G P
Sbjct: 529 CAVWEEMHRRGICP 542
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + NC+++ AN A Q F+ + + +PD+ SY AL+ A+ + EA RV
Sbjct: 298 GVESFNCLLVALANEGLGREARQVFDKMHGQY--SPDLRSYTALMLAWCNARNLVEAGRV 355
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
+ ++ G+KP+ + ++ +++ L + + AL + + M G P+ T +R C
Sbjct: 356 WNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCK 415
Query: 188 R-EMD 191
R +MD
Sbjct: 416 RGKMD 420
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ L +A+ P +V +I +D A + FE + + PD+ +Y L+
Sbjct: 388 LKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEAR-CQPDVATYTCLLV 446
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK-AALSVIDEMVNAGFA 173
+G K+ + V E + G P+A +Y+ L+ LTNR A + +M+ G
Sbjct: 447 GYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKL-LTNRKMPDDAARIYKKMIKKGLE 505
Query: 174 PSKET 178
P+ T
Sbjct: 506 PTIHT 510
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +N +I + ++ EA ++FE + + G PN +Y++L+ H A
Sbjct: 363 GMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMA 422
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM A P T
Sbjct: 423 MECFEEMQEARCQPDVAT 440
>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
macropoda]
Length = 427
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 22 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 78
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 79 KS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKF 137
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 138 LEALSVFSEM 147
>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 426
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 19 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 77
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 78 STLLTMYVENKKFLEALSVFSEM 100
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 138 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 197
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 198 ANNLIQEMQSRGIEPNSIT 216
>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 83 IW--DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+W D+D A + F V G +PD+ SY L+ F +L K +A RV + + GV+PN
Sbjct: 237 VWRGDMDGAMKVFREVLDR-GWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPN 295
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++Y +++ A+ + A+++I++M+ E KV
Sbjct: 296 EVTYGVMIQAYCKEKKSGEAVNLIEDMIAKDLVVGSELCCKV 337
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A+ F+ G F + P++ S N L+ A K + A +V + + +G+ PN +SY+ ++
Sbjct: 174 AFLVFKNCGERFRVLPNVVSCNILLKALCKGNEVEVAVKVLDEMPGMGLVPNVVSYTTVL 233
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
+ D A+ V E+++ G++P
Sbjct: 234 GGFVWRGDMDGAMKVFREVLDRGWSP 259
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 59 NLSRAEPPYKSVAAINCVILGCANI-----WDLDR-----AYQTFEAVGSSFGLTPDIHS 108
N+ +A ++ V+ NC + G + W + A F+ G G + +
Sbjct: 346 NVEKACEMWRMVSRKNCGLNGAVVVSTLIHWLCKKGKVLEARNVFDEFGK--GSVASLLT 403
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI + + EA+R+++ +V GV PNA +Y++L+ + K + V++EM+
Sbjct: 404 YNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEML 463
Query: 169 NAGFAPSKET 178
P+K T
Sbjct: 464 ENRCLPNKST 473
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 62 RAEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
R+ PP+ I VI G RA +TF + SFG+ P + S NAL+ + + K
Sbjct: 111 RSSPPHCCGEEPIVTVIRGYGLAGKPVRALKTFLRI-ESFGIRPSVRSINALLNSLVQNK 169
Query: 121 KTFEASRVFEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ A VF++ V PN +S ++L+ A + + A+ V+DEM G P+
Sbjct: 170 RYRLAFLVFKNCGERFRVLPNVVSCNILLKALCKGNEVEVAVKVLDEMPGMGLVPN 225
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
G+ P+ +YN LI F K+ E RV E ++ PN +Y++L+D L
Sbjct: 431 GVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILIDGIL 482
>gi|449017914|dbj|BAM81316.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 898
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKLK 120
RA + ++ N +I GCA LD+A++ FE + S +PD H+Y AL+ A +
Sbjct: 545 RASRVHPTLVMYNILIGGCARTLRLDKAFEFFERLQSPPDNFSPDTHTYCALLDACARCS 604
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
T A VFE + G + ++ Y L+ A + D++ A +V M G AP+
Sbjct: 605 NTELALHVFEEIERKGEQIDSAVYGALLAAVARSGDRRLAFAVRGLMRRRGLAPTTAVFA 664
Query: 181 KVRRRCVREMD 191
+ C + D
Sbjct: 665 NLMELCAADGD 675
>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hederifolia]
Length = 364
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 2 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFSEM 83
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L+ A F + S G+ P++++YN+LI GK K EA +++E L+
Sbjct: 990 NLLIHGLGRSGRLEEAVSLFNDMEKS-GIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G KPN +Y+ L+ + + A + +M+ G P+ T
Sbjct: 1049 KNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSST 1093
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + +E + S G+ PD+ + NA++Y+ K + A RVF L S+GV P+ ++Y+++
Sbjct: 444 KAIKRYELMKSK-GIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMM 502
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + A+ V EM+ P
Sbjct: 503 IKCCSKASNADEAMKVFSEMIETRCVP 529
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI SY LI A + ++ F L LG++P+ ++Y+LL+ + + A
Sbjct: 946 GINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEA 1005
Query: 161 LSVIDEMVNAGFAPS 175
+S+ ++M +G AP+
Sbjct: 1006 VSLFNDMEKSGIAPN 1020
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N +A+ +V A V+ + +D A F+ + G+ P +SYN+LI
Sbjct: 341 IEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQK-GIEPQQYSYNSLIS 399
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + A +F H+ G PN +Y L ++ + + + A+ + M + G P
Sbjct: 400 GFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVP 459
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL PD+ +YN LI+ G+ + EA +F + G+ PN +Y+ L+ +L +
Sbjct: 978 TELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLI-LYLGKEGK 1036
Query: 158 KA-ALSVIDEMVNAGFAPS 175
A A + +E++ G+ P+
Sbjct: 1037 AAEAGKMYEELLKNGWKPN 1055
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN +I K K +EA ++ L+S G P +Y L+D L + + A + DEM
Sbjct: 848 TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907
Query: 168 VNAGFAPSK 176
++ G P++
Sbjct: 908 LDYGCKPNR 916
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRA 89
P Y +++ C K +++ E + +R P V A+N +I + A
Sbjct: 494 PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVP---DVLAVNSLIDTLYKAGRGNEA 550
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
++ F + L P +YN L+ G+ K E + E + S PN ++Y+ ++D
Sbjct: 551 WKIFHEL-KEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLD 609
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
N + AL ++ M G P + V+E
Sbjct: 610 CLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKE 649
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + ++YN LIY K EA V++ + + G+ P+ +YS+L+ A RD +
Sbjct: 177 GIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLA-FGKRDVETV 235
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ EM + G P+
Sbjct: 236 VWLLREMEDHGVKPN 250
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + + GL PD+++YNAL+ A+ + + A+ +F + +G +P+ SY++
Sbjct: 312 EKAEEVFEQMQEA-GLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 370
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LVDA+ Q A +V +M G P+ ++
Sbjct: 371 LVDAYGKAGFQDDAEAVFKDMKRVGITPTMKS 402
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
DI +YN LI +G+ +F+ L S G+KP+ ++++ + A+ + L +
Sbjct: 469 DISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIF 528
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+EM++ G P T K + C +E+ ++V + + M T
Sbjct: 529 EEMIDDGCYPDGGTAKVLLAACS---NEDQTEQVTTVIRTMHKDMKT 572
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 18 YGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77
YG +D IF + ++ KG E+ +S++ L+ L + + + V
Sbjct: 73 YGSGFVD--GIFPVLSPTAQQILDYVEKGVES-ESIWGSLDMLPPTLDAWDDIFTV-AVQ 128
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
L WD + + + SSF PD+ YN LI AFG+ EA + L+
Sbjct: 129 LRMRKQWDSIISICRWILLRSSF--KPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARC 186
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P +Y+LL+ A+ + + A +V EM N G S
Sbjct: 187 IPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSS 224
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD SYN L+ A+GK +A VF+ + +G+ P S+ +L+ A+
Sbjct: 359 MGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNK 418
Query: 160 ALSVIDEMVNAGF 172
++++M +G
Sbjct: 419 CEEILNQMCKSGL 431
>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
velutina]
Length = 382
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
[Coelocarpum swinglei]
Length = 440
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E+ SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 8 EKALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 64
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K +A + + + GV PNA SY
Sbjct: 65 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSY 123
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 124 SALLTMYVENKKFLEALSVFAEM 146
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + + A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244
Query: 161 LSVIDEMVNAGFAPSKET 178
++I EM N G P+ T
Sbjct: 245 NNLIQEMQNRGIEPNSIT 262
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ ++ G+ PD+++Y+ LI K K +A+ +
Sbjct: 158 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAN-GVQPDVYTYSVLINGLCKESKMDDANEL 216
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + M++ P T + +
Sbjct: 217 FDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 276
Query: 189 EMD-EESNDRVEALAKK 204
D ++++D ++ ++ K
Sbjct: 277 NGDLKQAHDLIDEMSMK 293
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 139 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTY 197
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 198 SVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 231
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 305 LIDGCCKEGDLDTAFKHRKRMIQENIRLDDV-AYTALISGLCQEGQSVDAEKMLREMLSV 363
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G APS T
Sbjct: 364 GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVT 406
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+AY+ + S G+ PDI +YN LI F K K A ++F L G P++++Y L
Sbjct: 512 KAYKLLMQLADS-GVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTL 570
Query: 148 VDA-HLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+D H +R++ A V+D+MV G PS K
Sbjct: 571 IDGFHRVDREED-AFRVLDQMVKNGCTPSSAVYK 603
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 46 GFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD 105
GF+T + +L+N + PP + +I A ++A ++F + FG PD
Sbjct: 111 GFDTYWKILEELKNSNIQIPP----PTFSVLIAAYAKSGMAEKAVESFGKM-KDFGCKPD 165
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
+ +YN++++ + + A V+ ++ L PN ++ +L++ N AL + D
Sbjct: 166 VFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFD 225
Query: 166 EMVNAGFAPS 175
EM G P+
Sbjct: 226 EMTQKGIPPN 235
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + LD A + F+ G PD+ +YNALI F K K EA R+
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGA-VKRGFVPDVVTYNALINGFCKADKLDEAQRIL 178
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTN-RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ +VS + P+ ++Y+ LV+ N R +A + ++D+ GF+P+ T + R
Sbjct: 179 QRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK----GFSPNVITYSTLISGLCR 234
Query: 189 EM 190
E+
Sbjct: 235 EL 236
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C + L+ A Q E + + G PDI SYNALI+ + + EA ++F ++ G +P
Sbjct: 233 CRELRRLESARQLLEKMVLN-GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEP 291
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+Y++L+D L A + +V G P T
Sbjct: 292 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 330
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLEN--LSRAEPPYKSVAAINCVILGCANIWDL 86
FSP Y +++ + L+S LE L+ +P + + N +I G A +
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKP---DIVSYNALIHGLAREQGV 274
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
A + F +V G P++ +YN LI K + EA +F LV G++P+A++Y++
Sbjct: 275 SEALKLFGSVLRQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+D + AL ++ +M G P
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVP 361
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ S+NA+I K K+ EA + + + G PNA+S++ L+ K A
Sbjct: 358 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 417
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM+ G P+ T
Sbjct: 418 MTTFKEMLKRGVKPTVVT 435
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G LD A + A+ + G P++++YN+LI L K EA +F
Sbjct: 471 VVTYSALIDGLGKAGKLDDARRLLGAM-EAKGCIPNVYTYNSLISGLCGLDKVDEALELF 529
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+V G P+ ++Y ++ A AL++ D + AG P+
Sbjct: 530 VAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPT 575
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ +YN L++ F K+ K EA ++F+ V G P+ ++Y+ L++ A
Sbjct: 115 GYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEA 174
Query: 161 LSVIDEMVNAGFAP 174
++ MV+ P
Sbjct: 175 QRILQRMVSESLVP 188
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ--- 157
G +P+ S+N LI + K +A F+ ++ GVKP ++Y++LVD R +
Sbjct: 393 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 452
Query: 158 KAALSVIDEMVNAGFAP 174
K A+++ D M+ G P
Sbjct: 453 KEAITLFDAMIEKGRVP 469
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y+ALI GK K +A R+ + + G PN +Y+ L+ A
Sbjct: 466 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA 525
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
L + MV G P T + C +EM +++
Sbjct: 526 LELFVAMVEKGCVPDTITYGTIISALCKQEMVDKA 560
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
++ +LEN S +P + + N +I D+D A+ F+ + GL+PD+ +Y+ L
Sbjct: 494 IFEELEN-SSCKP---DIISFNSLINCLGKNGDIDEAHMRFKEMREE-GLSPDVVTYSTL 548
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I FGK K A R+F+ +++ G PN ++Y++L+D + A+ + ++ G
Sbjct: 549 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 608
Query: 173 APSKETLKKVRR 184
P T + R
Sbjct: 609 TPDSITYAVLER 620
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL Y+ + G S PDI SYN LI +FG+ + EA ++FE L + KP+ +S+
Sbjct: 455 DLHDLYEKMKQDGPS----PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 510
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L++ N D A EM G +P
Sbjct: 511 NSLINCLGKNGDIDEAHMRFKEMREEGLSP 540
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
S K FE VY +L YK + A N ++ A +D+ Y F+ +
Sbjct: 241 SNKAFE----VYVELRRRG-----YKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKH- 290
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PD ++Y +I GK+ K E+ +F+ + G PN ++Y+ ++ A NR +
Sbjct: 291 CEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTI 350
Query: 162 SVIDEMV 168
+ +MV
Sbjct: 351 FLFSKMV 357
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++ D YN ++ A GKLKKT + ++E + G P+ SY++L+ + + A+
Sbjct: 433 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAV 492
Query: 162 SVIDEMVNAGFAP 174
+ +E+ N+ P
Sbjct: 493 KIFEELENSSCKP 505
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKA 159
G ++++Y+A++ A+G+ + EA +VF+ + G KPN ++Y+ ++DA D K
Sbjct: 229 GFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKK 288
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
AL + +EM G P + T + C R E + RV A ++ I +
Sbjct: 289 ALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQD 339
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D+ +YNALI A+GK K +A+ +F+ + + G+ PN ++YS L+DA+ + A
Sbjct: 440 GLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDA 499
Query: 161 LSVIDEMVNAGFAP 174
S+ E AG P
Sbjct: 500 TSIFVEFKRAGLKP 513
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ +Y+ALI A+ K +A+ +F G+KP+ + YS L+D+ + A
Sbjct: 475 GLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDA 534
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ EM AG P+
Sbjct: 535 VVLLQEMTQAGIQPN 549
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SYN LI + KL + +A + + +G+K + ++Y+ L+DA+ K A
Sbjct: 405 GVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDA 464
Query: 161 LSVIDEMVNAGFAPS 175
+ D+M G P+
Sbjct: 465 AGLFDKMKAEGLVPN 479
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P++ +Y+ +I +GKL EA ++ + GV+P+ +SY+ L+D + AL
Sbjct: 371 ISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDAL 430
Query: 162 SVIDEMVNAGF 172
+ +M G
Sbjct: 431 TACKDMERVGL 441
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 11/179 (6%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+G L + I L+ F A + +S S Y C R+ + FQ
Sbjct: 209 LGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRC-REALKV-----FQAMKK 262
Query: 61 SRAEPPYKSVAAINCVILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ +P ++ N +I C DL +A FE + G+ PD ++N+LI +
Sbjct: 263 AGCKP---NLITYNTIIDACGKGGVDLKKALDIFEEMQKE-GVEPDRITFNSLIAVCSRG 318
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ RVF + G++ + +Y+ L+DA + A S++ M +P+ T
Sbjct: 319 SLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVT 377
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G N +D Y + + ++ G PD +YNALI + +A R+++
Sbjct: 418 AIYTCLITGFGNQKRMDTVYGLLKEMKAN-GCPPDGKTYNALIKLMTNKRMPDDAVRIYK 476
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ G+KP +YS+++ ++ R+ + ++ DEM G P
Sbjct: 477 KMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCP 520
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+L C D + ++ +A G S PD+ SY L+ F K K EA + FE + G
Sbjct: 357 LLRCKKRSDAIKLFEVMKAKGPS----PDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAG 412
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+P+A Y+ L+ + ++ EM G P +T
Sbjct: 413 CRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKT 454
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI ++N ++ + KK +A ++FE + + G P+ SY++LV K A+
Sbjct: 345 PDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQY 404
Query: 164 IDEMVNAGFAP 174
+EM AG P
Sbjct: 405 FEEMQGAGCRP 415
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 69 SVAAINCVI--LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
V INC++ LG A + A FE + F TP++ +Y L+ + +++ EA
Sbjct: 277 GVETINCLLDSLGRAKLGK--EALTIFEKLHGRF--TPNLQTYTVLLNGWCRVRNLMEAG 332
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+++ ++ KP+ ++++ +++ L + + A+ + + M G +P
Sbjct: 333 KIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSP 380
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+L + +A+ P V + ++ + A Q FE + + G PD Y LI
Sbjct: 368 KLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGA-GCRPDAAIYTCLITG 426
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
FG K+ + + + + G P+ +Y+ L+ R A+ + +M+ G P+
Sbjct: 427 FGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPT 486
Query: 176 KET 178
T
Sbjct: 487 THT 489
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 60 LSRAEPPYKSVAAINCVILGC-----ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+S P S N ++ GC N +D A + FE + + P+ Y LI
Sbjct: 189 VSNPVTPSASTVTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIK 248
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+G+ K+ +A R+F + GV+PN ++Y+ ++DA + +A +++EM+++G P
Sbjct: 249 GYGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEP 308
Query: 175 SKETLKK-VRRRCVR-EMDE 192
T ++ CV+ +MD+
Sbjct: 309 DLITFSTIIKGYCVQSDMDK 328
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
LD+A + F + G+ P+ +YN++I A ++ + A+R+ E ++S G++P+ +++
Sbjct: 255 QLDKAMRIFRLMQQD-GVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITF 313
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S ++ + D + ++ M G P + CV+
Sbjct: 314 STIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVK 357
>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 426
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 15 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 71
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 72 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 131 LEALSVFSEM 140
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD+ E R PP + +I G LD+A Q F+ + + L PDI +Y
Sbjct: 322 LDAEGLLNEMRERGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPDIVTY 378
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N LI + +A+ +++ + S + PN ++YS+L+D+H + A +DEM+N
Sbjct: 379 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 438
Query: 170 AGFAPSKETLKKV 182
G P+ T +
Sbjct: 439 KGILPNIMTYNSI 451
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N V+ G D+A++ F+ + FG+ PD+ S+ LI F ++ + EA ++
Sbjct: 164 GIVTYNSVLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALKI 222
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + G+KP+ +S+S L+ A++ + EM G P
Sbjct: 223 YKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP 268
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +YN LI F EA +FE + + G++P+ +Y +++ H+T + K A
Sbjct: 511 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAF 570
Query: 162 SVIDEMVNAG 171
+ DEM+ G
Sbjct: 571 QLHDEMLQRG 580
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG G PD+ +YN L+ K ++ +A + + GV P+ +++ L+ +
Sbjct: 295 EMVGC--GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCI 352
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD-EESND 196
AL + D M+N P T + R+ D +++ND
Sbjct: 353 EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAND 396
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
EIF + L+ + KG + D+ F E +++ P ++ N +I G ++
Sbjct: 405 EIFPNHVTYSILIDSHCEKG-QVEDAFGFLDEMINKGILP--NIMTYNSIIKGYCRSGNV 461
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ + + + + ++PD+ +YN LI+ + K K +A ++ + V+P+ ++Y++
Sbjct: 462 SKGQKFLQKMMVN-KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 520
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L++ + + + A + ++M G P + T
Sbjct: 521 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 552
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FGL PD Y +I F + +A RV + +V G P+ ++Y+ L++ R
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323
Query: 160 ALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
A +++EM G P T + C+ +++ + FD +N R +I+
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCI-------EGKLDKALQLFDTMLNQRLRPDIV 376
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P I +YN+++ + +A VF+ + GV P+ S+++L+ + +
Sbjct: 158 SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIE 217
Query: 159 AALSVIDEMVNAGFAP 174
AL + EM + G P
Sbjct: 218 EALKIYKEMRHRGIKP 233
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ ++ N +++ + K + + V + V P+ ++++++VDA D +AA++++
Sbjct: 94 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153
Query: 165 DEMVNAGFAPSKETLKKVRRRCVR 188
D MV+ G P T V + R
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCR 177
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 26 EEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E+ P T Y ++ A C K + +++ + +P Y + +A+ I G
Sbjct: 202 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK-TGLKPDYNACSAL---IDGFMRE 257
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D+D + + V S G+ ++ +YN LI+ K K +A+ + + +++LG KPN+ +
Sbjct: 258 GDIDEVLR-IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ LL++ + + AL ++DEM PS
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPS 348
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G D+ RA + F+ + GL PD +Y+ +I + K + EA +F +
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEK-GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S GV+P++ Y+ LV D + A+++ EM+ GFA +
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT 698
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I YNAL+ K A ++F+ + G++P++++YS ++D + + + A
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 648
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES--NDRVEALAKKF 205
S+ EM + G P + C +E D E N E L K F
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 3/145 (2%)
Query: 30 SPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
+P Y +++C K + ++ + LE R P ILG + + A
Sbjct: 416 APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP--DAVTFGAFILGYSKTGKMTEA 473
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ F+ + GL P+ Y LI K EA +F HL +LGV P+ + S +
Sbjct: 474 AKYFDEM-LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 532
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
L N + AL V E+ G P
Sbjct: 533 GLLKNGRVQEALKVFSELKEKGLVP 557
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L D +Y +L+Y + KL ++ E +FE +V+ GVKP+ ++Y L++ AH + A
Sbjct: 764 LIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 823
Query: 162 SVIDEMVNAGF 172
+ DE+V G
Sbjct: 824 KLRDEVVGKGM 834
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + +I+G A+ ++ A + + + S G+ PDI YNA+I K K EAS
Sbjct: 383 NVVVYSTLIMGYASEGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTY 441
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G+KP+A+++ + + A DEM++ G P+
Sbjct: 442 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++ A I + K K EA++ F+ ++ G+ PN Y++L++ H + A
Sbjct: 449 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 508
Query: 161 LSVIDEMVNAGFAPSKET 178
LS+ + G P +T
Sbjct: 509 LSIFRHLHALGVLPDVQT 526
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A + + +G GL P + + + L+ +F + K EA+RVFE + SLG+ P+ +
Sbjct: 853 DLTEASKLLDEMGE-LGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTL 911
Query: 145 SLLVDAHLTNRDQKAALSVIDEMV 168
LV+ +L + D + A ++I ++V
Sbjct: 912 IDLVNGNLNDTDSEDARNLIKQLV 935
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 47 FETLDSVYFQLENLSRA-----EPPYKSVA----AINCVILGCANIWDLDRAYQTF-EAV 96
+ T+ Y + EN++ A E P K V N ++ GC D+++A F E +
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
F T S+N LI + K K EAS++F+ +++ + P+ ++Y+ ++D H
Sbjct: 692 QKGFATT---LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGK 748
Query: 157 QKAALSVIDEM 167
+ A + EM
Sbjct: 749 MEEANLLFKEM 759
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ PD+ + +A I+ K + EA +VF L G+ P+ +YS L+ + +
Sbjct: 517 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 576
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEM G AP+
Sbjct: 577 KAFELHDEMCLKGIAPN 593
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P SY A+I K A+++ E + G+KPN + YS L+ + + + A
Sbjct: 345 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEAR 404
Query: 162 SVIDEMVNAGFAP 174
++D M +G AP
Sbjct: 405 RLLDGMSCSGVAP 417
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N ++ + + D ++ + SS PD +SYN +IYA+G+ + EASR+
Sbjct: 631 STATYNSLMHMYSRLGDCEKCENILTEIKSSRA-RPDRYSYNTMIYAYGRKGQMKEASRL 689
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G+ P+ ++Y++ V +++ N + A+ ++ MV G P++ T +
Sbjct: 690 FSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTI 743
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 83 IWDLDRAYQTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
+ LDRA + A+G+ G P++ +YNALI G K E VF+ + S G
Sbjct: 359 VSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGF 418
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ ++++ L+ N V EM +G+ P ++T
Sbjct: 419 VPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDT 459
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP SV N +I L+ A Q E + G+ PD+ +Y L+ + K
Sbjct: 314 PP--SVVTYNSLISSYVKDGLLEEATQLKEEMEVK-GIEPDVITYTTLVSGLDRAGKIDA 370
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A + ++ G KPN +Y+ L+ H + V DE+ +AGF P
Sbjct: 371 AIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVP 420
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++YN LI + EA++VF+ + + G +P+ ++ + L+D + R A
Sbjct: 242 GIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEA 301
Query: 161 LSVIDEMVNAGFAPS 175
+ V+ EM G PS
Sbjct: 302 IGVLKEMEQGGCPPS 316
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ PDI +YNA++ A + + +A ++F + +L +P+ +SYS L+ A+
Sbjct: 487 GIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAY 537
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ ++N L+ FG+ E S VF+ + G P +Y L+ ++
Sbjct: 415 SAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFD 474
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
A+ + M+ AG P T V R E +++ A + D R
Sbjct: 475 QAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSR 524
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN+LI ++ K EA+++ E + G++P+ ++Y+ LV AA
Sbjct: 312 GCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAA 371
Query: 161 LSVIDEMVNAGFAPS 175
+ +EM+ G P+
Sbjct: 372 IGTYNEMLRNGCKPN 386
>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
lycioides]
Length = 429
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 17 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 73
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 74 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 132
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 133 LEALSVFSEM 142
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 239
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 240 ANNLIQEMQNRGIEPNSIT 258
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 37 PLVVACSRKGFETLDSVYFQLENLSRAE-----------PPYKSVAAINCVILGCANIWD 85
P +V C+ T+ Y + NLS+A PP N +I +
Sbjct: 572 PTLVTCN-----TIIKGYLRAGNLSKANDFLNTMISEGVPP--DCITYNTLINSFVKEEN 624
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
DRA+ + GL P++ +YNA++ F + + EA V ++ G+ P+ +Y+
Sbjct: 625 FDRAFFLINNM-EERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYT 683
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L++ +++ + K A V DEM+ GF P
Sbjct: 684 SLINGYVSKDNMKEAFRVHDEMLQRGFVP 712
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 19 GDSIIDMEE--IFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV 76
G + +MEE +++ + LV A R+G L S F L + + + N +
Sbjct: 244 GVYLSEMEEKGVYADLVTYNTLVNAYCRRG---LVSEAFGLVDCMAGKGLKPGLFTYNAL 300
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I G +RA + + + GL P+ ++N ++ + + +EA RVF ++ G
Sbjct: 301 INGLCKEGSYERAKRVLDEM-LGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRG 359
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V P+ +S+S +V N + AL+ ++M G P
Sbjct: 360 VVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVP 397
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +YN L+ A+ + EA + + + G+KP +Y+ L++ + A
Sbjct: 254 GVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERA 313
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
V+DEM+ G P+ T + R+ D +RV
Sbjct: 314 KRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
+ +I G ++ +A FE + + L PD+ +YN L+ F K+ + +A ++
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETM-TLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYD 529
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++S + P+ +S+S+L++ + A + DEM G P+ T + + +R
Sbjct: 530 MISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLR 586
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
CS +E ++ ++F++ N+ P I C + + + R + E +G
Sbjct: 111 CSIDKWEKVEELFFEMLNVG-IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG---- 165
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ SYN LI EAS++ E +VS+G+KPN+ SY+ L+ + +A
Sbjct: 166 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
S+ +M++ G P T +
Sbjct: 226 SLFRKMLSNGITPGVVTYNTI 246
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A F + GL+PD SY ALI A KL + +A F +++ GV PN + +S
Sbjct: 46 IDKAMDIFNKM-RQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFS 104
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LV + + + EM+N G P+
Sbjct: 105 SLVYGLCSIDKWEKVEELFFEMLNVGIHPN 134
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ H +N A+ K +A +F + G+ P+A+SY L+DA A
Sbjct: 25 GISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDA 84
Query: 161 LSVIDEMVNAGFAPS 175
++M+N G P+
Sbjct: 85 EVKFNQMINEGVTPN 99
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G +D AY F + S+ G+TP + +YN +++ + K+ EA ++ +++
Sbjct: 209 NTLLHGYCKAGRIDSAYSLFRKMLSN-GITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 267
Query: 134 SLGVKPNAMSYSLLVDA 150
+ G K +Y+ +++
Sbjct: 268 NSGTKWGIYTYNTILNG 284
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD SYN +I + K +A +VF+ +V +GV PN ++Y+ ++D H+ D +A +
Sbjct: 14 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73
Query: 164 IDEMVNAGFAPS 175
D+M++ G P+
Sbjct: 74 RDQMLHDGPKPN 85
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I C N D D+A + + + + +G+ P + +Y+ L+ A + + ++
Sbjct: 401 VVSYNTIISACCNKGDTDKALELLQEM-NKYGIRPTLRTYHTLVSALASAGRVHDMECLY 459
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ ++ V+P++ Y ++VDA++ + S+ EM G A
Sbjct: 460 QQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 503
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I L++ + + G+ D+ S+ +++ AF K K EA +
Sbjct: 260 SVETFNTLIDAYGTAGQLEKCFTVLSDMQQK-GIKSDVISFGSVVKAFCKNGKIPEAVAI 318
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ ++ V PNA Y+ ++DA++ + D + A ++++M N+G + S
Sbjct: 319 LDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSAS 365
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + DL A+ FE + S + PD +YNALI KL+ +A + +
Sbjct: 195 NTLINGYCQVRDLRGAFCIFEQMKSRH-IRPDHITYNALINGLCKLEMVTKAEDLVMEME 253
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
GV P+ +++ L+DA+ T + +V+ +M G
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 292
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 67 YKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
YK VA N +I D ++A+ E + +S G++ I +YN L+ + +
Sbjct: 324 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNS-GVSASIVTYNLLLKGLCRSSQI 382
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA + L + G++P+ +SY+ ++ A D AL ++ EM G P+ T
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 438
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 70 VAAINCVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+ A C IL G + +A Q E + + GL P YN LI + +++ A
Sbjct: 154 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT-GLVPTTVIYNTLINGYCQVRDLRGAFC 212
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+FE + S ++P+ ++Y+ L++ A ++ EM +G PS ET
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVET 263
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G + + V + G+K + +S+ +V A N A
Sbjct: 256 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 315
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
++++D+M+ AP+ + + + D E
Sbjct: 316 VAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 348
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y+ +I+ GK K EA ++FE +V G P+ ++Y++++D + + A
Sbjct: 167 GFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMA 226
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + ++M +AGF P + T
Sbjct: 227 MKLYNDMQDAGFHPDRVT 244
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI+A+G+ EA R+F + G P+ ++Y LVD H A
Sbjct: 97 GCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNA 156
Query: 161 LSVIDEMVNAGFAP 174
+ + +M AGF P
Sbjct: 157 MDMYQKMQQAGFQP 170
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 10/175 (5%)
Query: 8 FITLNEFETAYG--DSIIDM-----EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+ TL + + G D+ +DM + F P T Y +++ C K + +++ E +
Sbjct: 140 YCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMV 199
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
R P S+ N +I A + A + + + + G PD +Y+ ++ G++
Sbjct: 200 ERGFAP--SLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA-GFHPDRVTYSIMMEVLGQIG 256
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA +F + G P+A Y ++VD R+ + AL +M+++G P+
Sbjct: 257 HLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPN 311
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD Y ++ +GK + A ++ ++ G+ PN + L+ ++L + A
Sbjct: 272 GWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLA 331
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
VI+ M G P+ +T + C
Sbjct: 332 FGVIETMKAWGLVPTLQTHTILLSSC 357
>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
virgata]
Length = 424
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 22 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 78
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 79 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 137
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 138 LEALSVFSEM 147
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 185 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 244
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 245 ANNLIQEMQNRGIEPNSIT 263
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 35 LYPLV-VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF 93
L P++ V C K +V+ + +P K N +I G + +++ A+ F
Sbjct: 757 LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLK---VYNLLIDGFLEVHNVEVAWNLF 813
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E + S+ G PD +YN+LI A GK K E +++ +++ G KPN ++Y++++ +
Sbjct: 814 EEMKSA-GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ A+ + +V+ F+P+ T
Sbjct: 873 SNRLDKAMDLYYNLVSGDFSPTPCT 897
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I L R+ +T EA+ + G+ PD+++YN+LI G + EA +++E L +G+
Sbjct: 1007 INGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGL 1066
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
KPN +Y+ L+ + + + + A + +M+ G P+ T ++
Sbjct: 1067 KPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++H+YN LI + + +A +F ++ SLGV+P A +Y LL+D H + A
Sbjct: 399 GVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKA 458
Query: 161 LSVIDEMVNAGFAPS 175
L ++M G AP+
Sbjct: 459 LETFEKMKARGIAPN 473
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P+I++Y I G+ K EA R+ + + G P+ ++Y++L+DA T R
Sbjct: 257 SMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLD 316
Query: 159 AALSVIDEMVNAGFAPSKET 178
A+ + +M ++ P K T
Sbjct: 317 DAMCLFTKMKSSSHKPDKVT 336
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A++ F+ + +G P+ YN L+ +GKL A F+ +V G++P+ SY+
Sbjct: 911 LDDAHEMFDGM-VHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYT 969
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+LVD AL +++ AG P
Sbjct: 970 ILVDILCIAGRVDDALHYFEKLKQAGLDP 998
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A N ++ G + +D A + F+ + G+ PD+ SY L+ + +A FE
Sbjct: 931 AIYNILVNGYGKLGHVDTACEFFKRMVKE-GIRPDLKSYTILVDILCIAGRVDDALHYFE 989
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L G+ P+ ++Y+L+++ ++ + ALS+ EM N G P
Sbjct: 990 KLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVP 1033
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A F G+ P + YN LI F ++ A +FE + S G P+ +Y+ L+
Sbjct: 773 ARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLI 832
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
DAH + + DEM+ G P+ T V V+
Sbjct: 833 DAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
MG L A NE +++ +P + Y +++ C K +D L +
Sbjct: 487 MGRLGEAKAMFNELKSSG----------LAPDSVTYNMMMKCYSK-VGQVDEAIKLLSEM 535
Query: 61 SR--AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
S+ EP V IN +I ++ A+Q F + L P + +YN L+ GK
Sbjct: 536 SKVQCEP---DVIVINSLIDTLYKAGRVEEAWQMFCRM-EEMNLAPTVVTYNILLAGLGK 591
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +A ++FE + G PN ++++ L+D N + AL + +M P T
Sbjct: 592 EGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLT 651
Query: 179 LKKVRRRCVRE 189
+ +++
Sbjct: 652 FNTIIHGFIKQ 662
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +SYN LI+ + EA V+ +VS G+KP+ ++S L+ A R+ K
Sbjct: 189 GFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTV 248
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN-DRVEALAKKFD 206
+ +++EM + G P+ T C+R + + D + K+ D
Sbjct: 249 MGLLEEMESMGLRPNIYTYTI----CIRVLGRDGKIDEAYRIMKRMD 291
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P + +++AL+ A GK + + E + S+G++PN +Y++ + + RD K
Sbjct: 222 SEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICI--RVLGRDGK 279
Query: 159 A--ALSVIDEMVNAGFAP 174
A ++ M + G P
Sbjct: 280 IDEAYRIMKRMDDDGCGP 297
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +YN+LI + + EA+RVFE +VS G P+ ++Y+ L+ ++ A
Sbjct: 316 GEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKA 375
Query: 161 LSVIDEMVNAGFAP 174
+ ++DEM+ GF P
Sbjct: 376 MHLLDEMIKVGFTP 389
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EA+G S G+ P++ +Y LI + EA + + ++ +GV P+ S ++LV
Sbjct: 234 EALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILV 293
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVR-EMDEES 194
D A SVI M+ G P T + R C++ +MDE +
Sbjct: 294 DVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEAT 341
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+D A + FE + S G PDI +Y +LI+ + K+K +A + + ++ +G P+ +++
Sbjct: 336 QMDEATRVFELMVSR-GCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTW 394
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+ AA + M G P+ +T
Sbjct: 395 TTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQT 428
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G+ PD N +I + LK V ++ LG++P+ +++++L++ D
Sbjct: 103 SSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDV 162
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A+ ++D + G+ +T
Sbjct: 163 GRAVELVDHVEKTGYRSDVKT 183
>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61400-like [Glycine max]
Length = 498
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+E + E SV N VI GC I D+++A + + + P++ +++ LI F
Sbjct: 228 MEKMDEVEVFANSVX-FNVVIDGCCKIGDMEKAIEVCSQMTEEX-IEPNVITFSILIDGF 285
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A ++ +V G+ P+ ++Y+ L+D H + K A + EM++AG +P+
Sbjct: 286 CNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNM 345
Query: 177 ETLKKVRRRCVREMDEESNDRVEALAKK 204
T+ V ++ D +ND ++ +K
Sbjct: 346 FTVSCVIDGLLK--DGRTNDAIKMFLEK 371
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 6 RAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
R+F ++EF +I D++++ L + C RK + ++ Q +N
Sbjct: 168 RSFNRMDEF--GVKPTIHDLDKL---------LFILCKRKHVKQAQQLFHQAKNRFSLTA 216
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
S+ +I G I D ++A F+A+ G D+ +YN L+ A K + EA
Sbjct: 217 KTYSI-----LISGWGEIGDSEKACDLFQAMLEQ-GCPVDLLAYNNLLQALCKGGRVDEA 270
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRR 184
+F ++S V+P+A +YS+ + ++ D ++A V+D+M P+ T +++
Sbjct: 271 KNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQ 330
Query: 185 RCVREMDEES 194
C E EE+
Sbjct: 331 LCKNEHVEEA 340
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A++ + + + L P++ +YN +I K + EA ++ + ++S GVKP+ SY
Sbjct: 301 DVQSAFRVLDKM-RRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSY 359
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + H + + AL ++ M P + T V + +R
Sbjct: 360 NAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIR 403
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 58 ENLSRAEPP----YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
E +SR P Y ++ A +C + +++RA + + L PD H+YN ++
Sbjct: 346 EMISRGVKPDTWSYNAIQAYHC------DHCEVNRALRLMFRMEKDICL-PDRHTYNMVL 398
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGF 172
++ + + + V+E++V P+ +YS+++ + + + A + M++ G
Sbjct: 399 KLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGI 458
Query: 173 APSKETLKKVRRRCVREMDEESNDRVEALAKK 204
P T++ +R R + D +E LA K
Sbjct: 459 PPYVTTVEMLRNRL---LGLGFIDHIEILAAK 487
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI GC +D A + F+ + + G PD+ ++N+L+ ++ EA +FE++
Sbjct: 114 VIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKA 173
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PN +SYS L+D A + +EMV P
Sbjct: 174 GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVP 212
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+T +A GS TPD+ +YN L+ K + EA +V+ P+ SY++++ A
Sbjct: 433 ETMKARGS----TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
+ A ++ EMV G P
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLP 512
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYA 115
E +SR PP S N +I L F+ + S F P++ +YN ++
Sbjct: 291 EMISRNHPP--SAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K K+ EA + + + G+ P+ ++YS LVD A +++EM G P
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFP 407
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 1 MGDLQRAFITLNEF--ETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLE 58
+G L RA L E E + DS D ++ A S+ G +D LE
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDAS-----------ILNALSKAG--KVDYALSHLE 433
Query: 59 NL-SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
+ +R P + N ++ G +D A TF A + TPD+ SY +I A
Sbjct: 434 TMKARGSTP--DLVTYNTLLDGLCKAGRIDEAI-TFLAKMVAAKCTPDVFSYTIIITALC 490
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ + A +F+ +V GV P+ + Y L+D N + AL ++
Sbjct: 491 RSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL 537
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+++GL+PD+ +Y+AL+ KL K A + E + GV P++ + DA + N
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT-----DASILNALS 420
Query: 158 KA-----ALSVIDEMVNAGFAP 174
KA ALS ++ M G P
Sbjct: 421 KAGKVDYALSHLETMKARGSTP 442
>gi|393245243|gb|EJD52754.1| hypothetical protein AURDEDRAFT_98234 [Auricularia delicata
TFB-10046 SS5]
Length = 432
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A+NCV+ A DL RA +++ G + L PD ++N L+ + R+
Sbjct: 263 IVAMNCVVEAAAKQGDLGRAVGIYKSAGD-WDLAPDTSTFNILLDGCRAHGQVELPERIL 321
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ GV+P+A ++ L+ L + A + EM A P++E + V R+CV
Sbjct: 322 AEMQERGVRPDARTFETLIRIALIPDQYEDAFFYLSEMEKAKMVPAQEVYEAVVRKCVVH 381
Query: 190 MD 191
D
Sbjct: 382 HD 383
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
Length = 1080
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L+ A F + G+ P++++YN+LI GK K EA +++E L+
Sbjct: 969 NLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1027
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G KPN +Y+ L+ + + +A + M+ G P+ T
Sbjct: 1028 TKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1072
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A Q +E + S G+ PD+ + NA+++ K + A RVF L ++GV P+ ++Y+++
Sbjct: 423 KAIQRYELMKSK-GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 481
Query: 148 V 148
+
Sbjct: 482 I 482
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N +A+ +V A VI + + A + F+ + G+ P+ +SYN+LI
Sbjct: 320 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLIS 378
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + +A +F+H+ G KPN ++ L ++ + + + A+ + M + G P
Sbjct: 379 GFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP 438
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 9/163 (5%)
Query: 30 SPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
SP T Y +++ C K E + Y +EN + V A+N +I
Sbjct: 472 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD-----VLAVNSLIDTLYKAGRG 526
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ F + L P +YN L+ G+ K E + E + PN ++Y+
Sbjct: 527 DEAWRIFYQL-KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 585
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++D N AL ++ M G P + V V+E
Sbjct: 586 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ L+ AFGK + + + + GVKPN SY++ + + A
Sbjct: 190 GVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEA 249
Query: 161 LSVIDEMVNAGFAP 174
++ +M N G P
Sbjct: 250 YRILAKMENEGCKP 263
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + ++YN L+Y K EA V+ ++ GV P+ +YS+L+ A RD +
Sbjct: 155 GIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETV 214
Query: 161 LSVIDEMVNAGFAPS 175
L ++ EM G P+
Sbjct: 215 LWLLREMEAHGVKPN 229
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +D A F + G PD +YN L+ A GK + E +V E +
Sbjct: 759 NSLICGLVDENLIDIAEGLFAEM-KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 817
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G + ++Y+ ++ + +R + A+ + +++ GF+P+ T
Sbjct: 818 RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCT 862
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
Q L +++ V A N V+ G A L A + F + + G++PD +Y +I
Sbjct: 425 IQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPDTITYTMMIK 483
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
K K EA ++F ++ P+ ++ + L+D
Sbjct: 484 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLID 518
>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N DL A+ + + GL P + Y+++I + K+ EA VF+ ++ GV P+
Sbjct: 560 CNHGDLASAFGLLDQMNER-GLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPD 618
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
A+ Y ++ + NR A + D+M+ GF PS + V V+E
Sbjct: 619 AIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKE 667
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
GSSF P+++ YN +I F + +A FE + + GV PN +++++L++ H +
Sbjct: 798 GSSF--MPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGE 855
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A+ + ++M G AP T
Sbjct: 856 IDHAIGLFNKMNADGLAPDGIT 877
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SSF LTP +HSY LI A K + E +++ ++ +GV P+ + + L+ +
Sbjct: 366 SSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHEL 425
Query: 158 KAALSVIDEMVNAG 171
AL ++ + G
Sbjct: 426 HLALKILQAIAKNG 439
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKT 122
K AI I+GC L R + EA + G+ PD Y +I + K ++
Sbjct: 581 KPSVAIYDSIIGC-----LSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRA 635
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++F+ ++ G +P++ SY+ ++ + S + +M+ GF P+
Sbjct: 636 IEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPN 688
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD ++YN LI+ F KL + + + G++PN ++Y +++ +
Sbjct: 298 MGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDC 357
Query: 160 ALSVIDEMVNAGFAPS 175
AL+++ M + PS
Sbjct: 358 ALTLLSSMSSFNLTPS 373
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +D A+ F+ + GL IH Y L Y + ++ EA +
Sbjct: 202 NRLIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEME 261
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S G + M Y+ L+ + + + A+ V M+ G P T
Sbjct: 262 SEGHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYT 306
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D A F + + GL PD +YNALI K + +A V +
Sbjct: 846 LINGHTRFGEIDHAIGLFNKMNAD-GLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKR 904
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN SY L+ + A + +EM++ + P
Sbjct: 905 GLFPNKSSYEKLLKCLCASHLGVHAFKIFEEMLSHDYVP 943
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
PL+ KG +++ Q E + + P +VA N I G + + A Q +
Sbjct: 615 PLIYGYFNKGLLA-EALSLQEEMVLKGASP--TVATYNSFIYGLCKLGRMSDAMQQLSDM 671
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
++ L PD+ SYN LIY + +L +A +F+ L S+ + P ++Y+ L+D +
Sbjct: 672 LAN-NLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 730
Query: 157 QKAALSVIDEMVNAGFAP 174
+ A + EM+N G AP
Sbjct: 731 LEVAQQLKVEMINEGIAP 748
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ +A + + +G FG+ P I +YN L+ ++ K K + + + G PN ++Y+
Sbjct: 521 MSKAVEVYRTMGE-FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 579
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++ + + A +I EM+ G S T
Sbjct: 580 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 612
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPD 105
F+ L S+Y + ++ N ++ G +L+ A Q E + G+ PD
Sbjct: 703 FDELRSIYL-----------FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE--GIAPD 749
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
I +Y L+ K+ A F+ ++ G++ ++ +Y+ + L D A S+ +
Sbjct: 750 IVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQE 809
Query: 166 EMVNAGFAP 174
EM+ GF P
Sbjct: 810 EMLAKGFPP 818
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L+PD+ + N ++ +A V+ + G+KP ++Y+ L+D++ + L
Sbjct: 501 LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGL 560
Query: 162 SVIDEMVNAGFAPSKET 178
++ EM G AP+ T
Sbjct: 561 DLLSEMQRRGCAPNDVT 577
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A + L+ A + FE + S +G P+ +N LI +GK+ T A ++F+ +V+
Sbjct: 899 LIDGLAKVGRLEEAMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G++P+ SY++LVD AL +E+ + G P
Sbjct: 958 GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDP 996
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAF 116
E +SR P N VI A +LD+A F + V S F TP +Y LI
Sbjct: 848 EMISRRCKP--DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP--RTYGPLIDGL 903
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K+ + EA R+FE + G KPN +++L++ + D + A + MVN G P
Sbjct: 904 AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E +P + Y +++ C K + ++V E + P V +N +I
Sbjct: 500 ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP--DVIVVNSLIDSLYKAGR 557
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A+Q F+ + L+P + +YN L+ GK + +A +FE ++ PN +S++
Sbjct: 558 VDEAWQMFDRM-KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFN 616
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
L+D N + + AL + +M P T V ++E
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A+ TF+ + G+ P++H+YN LI + + +A ++ + S+GV+P A +Y
Sbjct: 382 DFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTY 440
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ +D + + A+ ++M G P+
Sbjct: 441 NIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ NC+I + ++A+ F+ + + G PD ++N L+ GK K E +
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDM-KNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ ++S KP+A++Y++++ + + + AL ++V++ F P+ T
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRT 895
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ A N +I G I D + A Q F+ + + G+ PD+ SY L+ + EA
Sbjct: 927 NCAIFNILINGYGKIGDTETACQLFKRMVNE-GIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F L S G+ P+ ++Y+ +++ ++ + AL++ +EM N G P
Sbjct: 986 FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+++YN+L+ G +A R++E L G++P+ +Y+ L+ + + + + A
Sbjct: 1028 GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHA 1087
Query: 161 LSVIDEMVNAGFAPSKET 178
+V M+ G P+ T
Sbjct: 1088 YTVYKNMMVDGCNPNIGT 1105
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
AYQ F+ G++P + SYN LI ++ T +A +F+ + ++G P+A ++++L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H + + EM++ P T
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAIT 860
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +SYN LI+ + EA V+ +VS G+KP+ +YS L+ A RD +
Sbjct: 187 GFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMV 246
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ EM + G P+ T
Sbjct: 247 MVLLKEMEDLGLRPNVYT 264
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + C +L I D + T E+VG + P ++YN I FGK +T +
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLGTMESVG----VQPTAYTYNIFIDYFGKSGETGK 455
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPSKETLK 180
A FE + + G+ PN ++ +A L + + L M N G AP T
Sbjct: 456 AVETFEKMKAKGIVPNIVA----CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY- 510
Query: 181 KVRRRC---VREMDEESN 195
+ +C V ++DE N
Sbjct: 511 NMMMKCYSKVGQVDEAVN 528
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A + L+ A + FE + S +G P+ +N LI +GK+ T A ++F+ +V+
Sbjct: 899 LIDGLAKVGRLEEAMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G++P+ SY++LVD AL +E+ + G P
Sbjct: 958 GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDP 996
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAF 116
E +SR P N VI A +LD+A F + V S F TP +Y LI
Sbjct: 848 EMISRRCKP--DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP--RTYGPLIDGL 903
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K+ + EA R+FE + G KPN +++L++ + D + A + MVN G P
Sbjct: 904 AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E +P + Y +++ C K + ++V E + P V +N +I
Sbjct: 500 ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP--DVIVVNSLIDSLYKAGR 557
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A+Q F+ + L+P + +YN L+ GK + +A +FE ++ PN +S++
Sbjct: 558 VDEAWQMFDRM-KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFN 616
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
L+D N + + AL + +M P T V ++E
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKE 660
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A+ TF+ + G+ P++H+YN LI + + +A ++ + + S+GV+P A +Y
Sbjct: 382 DFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY 440
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+D + + A+ ++M G P+
Sbjct: 441 ITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ NC+I + ++A+ F+ + + G PD ++N L+ GK K E +
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDM-KNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ ++S KP+A++Y++++ + + + AL ++V++ F P+ T
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRT 895
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ A N +I G I D + A Q F+ + + G+ PD+ SY L+ + EA
Sbjct: 927 NCAIFNILINGYGKIGDTETACQLFKRMVNE-GIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F L S G+ P+ ++Y+ +++ ++ + AL++ +EM N G P
Sbjct: 986 FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+++YN+L+ G +A R++E L G++P+ +Y+ L+ + + + + A
Sbjct: 1028 GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHA 1087
Query: 161 LSVIDEMVNAGFAPSKET 178
+V M+ G P+ T
Sbjct: 1088 YTVYKNMMVDGCNPNIGT 1105
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
AYQ F+ G++P + SYN LI ++ T +A +F+ + ++G P+A ++++L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H + + EM++ P T
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAIT 860
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +SYN LI+ + EA V+ +VS G+KP+ +YS L+ A RD +
Sbjct: 187 GFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMV 246
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++ EM + G P+ T
Sbjct: 247 MVLLKEMEDLGLRPNVYT 264
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DLD ++ F + + G PD+ ++ L+ K + EA F+ + G+ PN +Y
Sbjct: 347 DLD-TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+ L + AL ++D M + G P+ T
Sbjct: 406 NTLICGLLRAGRIEDALKLLDTMESVGVQPTAYT 439
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + C +L I D + T E+VG + P ++Y I FGK +T +
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLDTMESVG----VQPTAYTYITFIDYFGKSGETGK 455
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPSKETLK 180
A FE + + G+ PN ++ +A L + + L M N G AP T
Sbjct: 456 AVETFEKMKAKGIVPNIVA----CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY- 510
Query: 181 KVRRRC---VREMDEESN 195
+ +C V ++DE N
Sbjct: 511 NMMMKCYSKVGQVDEAVN 528
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S + +S P ++ N +I G A D+ A + +
Sbjct: 702 LLKACCKSG--RMQSALAVTKEMSAQNIP-RNTFIYNILIDGWARRGDIWEAADLMQQMK 758
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ E + S+GVKPN +Y+ L++
Sbjct: 759 RE-GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 817
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ ALS +EM +G P +
Sbjct: 818 EKALSCFEEMKLSGLKPDR 836
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G + D D+ FE GL P + +Y LI + KL K +A V + + G+K
Sbjct: 460 GYTMVGDEDKCLLVFERF-KECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIK 518
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
N +YS+L++ L +D A ++ ++++ G P
Sbjct: 519 HNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKP 554
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A ++ +A F+ + S G P +H+YNALI + +K +A ++ + +
Sbjct: 597 IIHGFARKGEMKKALDVFDMMRMS-GCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLA 655
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
GV PN +Y+ ++ + + D A + ++ + G T + + + C + +S
Sbjct: 656 GVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS- 714
Query: 196 DRVEALAKKFDIRMNTENRKNILFNL 221
ALA ++ R ++N+
Sbjct: 715 ----ALAVTKEMSAQNIPRNTFIYNI 736
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D+ RA +T E + S G+ P++ +Y LI + + +A FE + G
Sbjct: 773 INACSKAGDMQRATKTIEEM-KSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSG 831
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ LSV EMV+ T +C+ ++
Sbjct: 832 LKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTAVHW-SKCLLKI 890
Query: 191 DEESNDRVEALAKKFDIRMNTENRKNILFN 220
+ + EAL K F N N N L N
Sbjct: 891 ERTGGEITEALQKTFPPNWNVYN--NTLTN 918
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV C+I A + + +A + + + + G+ ++ +Y+ LI F KLK A +
Sbjct: 485 SVITYGCLINLYAKLGKVSKALEVSKEMEHA-GIKHNMKTYSMLINGFLKLKDWANAFAI 543
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE L+ G+KP+ + Y+ ++ A A+ + EM P+ T
Sbjct: 544 FEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 594
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I + +DRA T + + P ++ +I+ F + + +A VF
Sbjct: 556 VVLYNNIITAFCGMGKMDRAVCTVKEMQKQRH-KPTTRTFMPIIHGFARKGEMKKALDVF 614
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P +Y+ L+ + R + A ++DEM AG +P++ T
Sbjct: 615 DMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHT 663
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 91 QTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+ ++AV S+F P Y ++ + + A FE + + G++P++ Y+ L+
Sbjct: 294 ENWQAVVSAFERIKKPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLI 353
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
A+ RD + ALS + +M G S
Sbjct: 354 HAYAVGRDMEEALSCVRKMKEEGIEMS 380
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 48/247 (19%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLEN 59
MG + RA T+ E + ++ P T + P++ +RKG F +
Sbjct: 569 MGKMDRAVCTVKEMQ----------KQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMR 618
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV----------------------- 96
+S P +V N +ILG +++A Q + +
Sbjct: 619 MSGCIP---TVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLG 675
Query: 97 --GSSF---------GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
G +F GL D+++Y AL+ A K + A V + + + + N Y+
Sbjct: 676 DTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYN 735
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
+L+D D A ++ +M G P T C + D + + K
Sbjct: 736 ILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSV 795
Query: 206 DIRMNTE 212
++ N +
Sbjct: 796 GVKPNVK 802
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + K A + +
Sbjct: 527 LINGFLKLKDWANAFAIFEDLIKD-GIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQ 585
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
KP ++ ++ + K AL V D M +G P+ T
Sbjct: 586 RHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHT 628
>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
macrostachya]
Length = 437
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 18 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 74
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 75 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 133
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 134 LEALSVFSEM 143
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 240
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 241 ANNLIQEMQNRGIEPNSIT 259
>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 426
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 15 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 71
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 72 RS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKF 130
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 131 LEALSVFSEM 140
>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g53330
gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 471
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYN ++ F ++KK EA+ +FE + G P+ +SY ++ D + A
Sbjct: 323 GLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEA 382
Query: 161 LSVIDEMVNAGFAPSKETLK 180
++DEM+ G+ P ++ L+
Sbjct: 383 AVILDEMLFKGYKPRRDRLE 402
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D Y+ LI + K ++ E S + E + G KP+ ++Y++L++ D ++A V+
Sbjct: 257 DAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVL 316
Query: 165 DEMVNAGFAP 174
DEMV G P
Sbjct: 317 DEMVEKGLKP 326
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD +YN LI F + A+RV + +V G+KP+ +SY++++ +
Sbjct: 285 SEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKW 344
Query: 158 KAALSVIDEMVNAGFAP 174
+ A + ++M G +P
Sbjct: 345 EEATYLFEDMPRRGCSP 361
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N R + +AA N +I G ++ A Q + GL P+I YN+ I
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKD-GLLPNISVYNSFIT 639
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ LK EA R++E ++ G+ + +Y+ L+D + + AL + EMV G P
Sbjct: 640 GYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699
Query: 175 SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
T + R D + ++ + DIR N
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPN 735
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
L+ FE D ++ + ++ L+ C+ +G + ++L R S
Sbjct: 302 LDIFEETLRDGLVPTDVTYTV------LIRGCTEEG---MPEKAYELCRQMRDHGLLPST 352
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
N VI G N A F+ + S G+ PD +YN LI+ + +K EA ++E
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEMADS-GI-PDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GVKP ++Y L+ + N A+ + EM GF P+ T
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++ AL + + +A ++ + + L ++PN + Y++L++ +L N + A
Sbjct: 696 GNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEA 755
Query: 161 LSVIDEMVNAGFAPSKET 178
+ DEM+ P T
Sbjct: 756 FRLHDEMLERKIMPDDTT 773
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +YN++I F K A V++ + + G+ PN ++Y+ +D + A
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLA 580
Query: 161 LSVIDEMVNAGFAP 174
L +++++ G P
Sbjct: 581 LKMLNDVRCKGLRP 594
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS+ EM
Sbjct: 118 STLLTMYVENKKFLEALSIFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+QL + + +V VI G A I LD AY FE S+ GL ++ Y++LI
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN-GLELNVVIYSSLID 695
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
FGK+ + EA + E L+ G+ PN +++ L+DA + + AL M N P
Sbjct: 696 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTP 755
Query: 175 SKET 178
+ T
Sbjct: 756 NHIT 759
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + V C + ++ Q+E Y A N +I+G + D AY
Sbjct: 306 YTSM--IGVLCKGNRLDEAVEIFEQMEQNRNVPCAY----AYNTMIMGYGSAGKFDEAYS 359
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
E + G P + +YN ++ GK + EA R FE + PN +Y++L+D
Sbjct: 360 LLERQKAR-GCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK-DAAPNLSTYNVLIDML 417
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDE 192
+ +AA V D M AG P+ T+ + R C +++DE
Sbjct: 418 CKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDE 460
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+ LD Y E +++ +V + +I G + +D AY E + GLTP++
Sbjct: 665 IDRLDEAYMLFEE-AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK-GLTPNV 722
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+++N L+ A K ++ EA F+++ +L PN ++YS+L++ R A E
Sbjct: 723 YTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQE 782
Query: 167 MVNAGFAPSKET 178
M G P+ T
Sbjct: 783 MQKQGLKPNTIT 794
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+M++ +P S Y +++ K E F++ + + + +V +N +I
Sbjct: 398 EMKKDAAPNLSTYNVLIDMLCKAGEV--EAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKA 455
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD A FE + +PD ++ +LI GK + +A R++E ++ PNA+
Sbjct: 456 KKLDEACSIFEGMNHKI-CSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVV 514
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+ + ++ + EM++ G +P
Sbjct: 515 YTSLIKSFFKCGRKEDGHKIFKEMIHRGCSP 545
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N I G +++AYQ E + + G P + +Y ++I K+ + EA +FE
Sbjct: 619 AYNTFIDGFCKSGKVNKAYQLLEEMKTK-GRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S G++ N + YS L+D A +++E++ G P+
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 721
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L+R P N +ILG LD A+ + + GL+P+I ++N L+
Sbjct: 737 EMLTRGIAP--DTITFNALILGHCKSSHLDNAFAIYAQMLHQ-GLSPNIATFNTLLGGLE 793
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA V + +G++PN ++Y +LV + ++ AL + EMV+ GF P
Sbjct: 794 SAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKAS 853
Query: 178 T 178
T
Sbjct: 854 T 854
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN +I A + KT +A ++ + + +KPN ++Y+ LV L K A
Sbjct: 602 GLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKA 661
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
+++EM +AGFAP+ T ++V + C
Sbjct: 662 KFLLNEMASAGFAPTSLTHQRVLQAC 687
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + D D A + E + + G+ P++ +Y ALI + K K EA ++
Sbjct: 222 VVGYNSLVAGFFHSGDADAALEVVERMKAD-GVEPNVVTYTALIGEYCKGKGMDEAFSLY 280
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-------ETLKKV 182
E +V GV P+ ++ S LVD + A ++ EM G AP+ ++L K
Sbjct: 281 EGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKA 340
Query: 183 RR 184
RR
Sbjct: 341 RR 342
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G + D+ A E + ++ G+ D+ YN+L+ F A V
Sbjct: 187 VVGWNALIDGYCKVQDMAAALAVVERM-TTQGVALDVVGYNSLVAGFFHSGDADAALEVV 245
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E + + GV+PN ++Y+ L+ + + A S+ + MV +G P TL
Sbjct: 246 ERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTL 295
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 80 CANIWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C I L +A + E++G S G+ D+ Y AL+ GK K EA V H S
Sbjct: 331 CTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQS 390
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-----VRRRCV 187
+ PN ++Y++LVDAH + A V+ +M P+ T V+R C+
Sbjct: 391 DNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCL 448
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A+ +E + S G+ PD+ + +AL+ + + EA +F + +GV PN ++Y
Sbjct: 273 MDEAFSLYEGMVRS-GVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYC 331
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
L+D+ R +L ++ EMV+ G
Sbjct: 332 TLIDSLAKARRGSESLGLLGEMVSRG 357
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G P +YN+L+ F K +A +F + GV + +Y +L++ R+
Sbjct: 845 SKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGI 904
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRR 184
++ +M GF PSK T+ + R
Sbjct: 905 EVRILLKDMKELGFKPSKGTISSMSR 930
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV N +I G ++ RA + E + + G PDI +YN L+ F K+ F A +
Sbjct: 15 RSVEHFNVLIDGYCRNGEISRAVELLEGMKTE-GPAPDIVTYNTLMNGFCKIGDLFTAKK 73
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + ++PN ++Y+ L+DA+ ++ + AL + DEM P
Sbjct: 74 LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVP 120
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVG 97
+ TL S + +L + RA +K + N +I G L +A+ +
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G++P++ +YN L+ + EA+ + + G+ PNA +Y +LV H +
Sbjct: 604 TE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNM 662
Query: 158 KAALSVIDEMVNAGFAPSKET 178
K + + EM+ GF P T
Sbjct: 663 KECVKLYCEMITKGFVPKTRT 683
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N +I G + + ++F GL PD ++N +I A+ K A ++
Sbjct: 402 VVAYNVLINGLFKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ S G+KPN+++ ++LV + + + ++++M+ GF P+ T K V
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ D+ +YN LI F +L A+ VF+ ++ G+ + ++Y+ L+ + + K
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +V +M+ G +P+ ET
Sbjct: 594 KAFAVHSQMLTEGVSPNVET 613
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV------------ 148
G P +YN LI F K KK +A + + + G+ PN+ +Y +L+
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPEL 735
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ L Q A + +EM GF P + TL
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y+ L+ GK+ E +++ +++ G P +Y++L+ + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM G P+ T
Sbjct: 701 KELMQEMQVRGIPPNSST 718
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +Y ++ K K EA VF + +GV PN SY+ L+D+ + A
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177
Query: 162 SVIDEMVNAGFA 173
+ MV G
Sbjct: 178 VLQGRMVVRGIG 189
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+I +YNALI K + A R+F L G+ PN ++Y+ L+D + + AA
Sbjct: 745 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 804
Query: 161 LSVIDEMVNAGFAPS 175
+ D+M+ G +PS
Sbjct: 805 FKLKDKMIEEGISPS 819
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ + ++ AF K K EA+ + + +LGV+PN ++Y L++ +++ D +AA
Sbjct: 187 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 246
Query: 161 LSVIDEMVNAGFAPSKET----LKKVRRRCVREMDE 192
V+ M G + + T +K ++C +MDE
Sbjct: 247 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQC--KMDE 280
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
VA G+ TL F++EN A +K + A
Sbjct: 434 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--------------------------- 466
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G T ++N +I K+ K EA +F+ + LG P+ ++Y L+D + +
Sbjct: 467 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 526
Query: 160 ALSVIDEMVNAGFAPSKE 177
A V M +PS E
Sbjct: 527 AFKVKGAMEREPISPSIE 544
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 6/174 (3%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLS 61
L +++L + E A G E+ S Y L++ C + + + V ++ +
Sbjct: 233 LINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA 292
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P ++ + I G +D A + + + GL ++ N+LI + K +
Sbjct: 293 ALVPDERAYGVL---IDGYCRTGKIDDAVRLLDEM-LRLGLKTNLFICNSLINGYCKRGE 348
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA V +V +KP++ SY+ L+D + A ++ D+M+ G P+
Sbjct: 349 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 402
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IIDMEEIFSPFTSLYPLVVACSRKG--FETLDSVYFQLENLSRA---------EPPYKSV 70
+++ EEIF L CS G + TL Y + N+ +A EP S+
Sbjct: 489 MVEAEEIFDKMKDL-----GCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSI 543
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASR 127
N +I G L +G GLTP+I +Y ALI + G L K F S
Sbjct: 544 EMYNSLISGLFKSRRLVEVTDLLTEMGIR-GLTPNIVTYGALIDGWCKEGMLDKAF--SS 600
Query: 128 VFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
FE + G+ N + S +V + R +A L ++ +MV+ GF P E K
Sbjct: 601 YFE-MTENGLSANIIICSTMVSGLYRLGRIDEANL-LMQKMVDHGFFPDHECFLK 653
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + F + S G PD +Y LI+ + EA R+ + ++
Sbjct: 684 NIAIAGLCKTGKVDDARRFFSML-SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 742
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN ++Y+ L++ + + A + ++ G P+ T
Sbjct: 743 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 787
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+I +YNALI K + A R+F L G+ PN ++Y+ L+D + + AA
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 838
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D+M+ G +PS T
Sbjct: 839 FKLKDKMIEEGISPSVVT 856
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P ++ N +I G ++DRA + F + GL P++ +YN LI +
Sbjct: 774 EMLRRGLVP--NIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYC 830
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
K+ A ++ + ++ G+ P+ ++YS L++ + D + ++ ++++M+ AG
Sbjct: 831 KIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ + ++ AF K K EA+ + + +LGV+PN ++Y L++ +++ D +AA
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280
Query: 161 LSVIDEMVNAGFAPSKET----LKKVRRRCVREMDE 192
V+ M G + + T +K ++C +MDE
Sbjct: 281 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQC--KMDE 314
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
VA G+ TL F++EN A +K + A
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--------------------------- 500
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G T ++N +I K+ K EA +F+ + LG P+ ++Y L+D + +
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 560
Query: 160 ALSVIDEMVNAGFAPSKE 177
A V M +PS E
Sbjct: 561 AFKVKGAMEREXISPSIE 578
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL ++ N+LI + K + EA V +V +KP++ SY+ L+D +
Sbjct: 361 LGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSE 420
Query: 160 ALSVIDEMVNAGFAPS 175
A ++ D+M+ G P+
Sbjct: 421 AFNLCDKMLQEGIEPT 436
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V +I G +D A + + L PD +Y LI + + K +A R
Sbjct: 294 RNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVR 353
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + ++ LG+K N + L++ + + A VI MV+ P
Sbjct: 354 LLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + F + S G PD +Y LI+ + EA R+ + ++
Sbjct: 718 NIAIAGLCKTGKVDDARRFFSML-SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN ++Y+ L++ + + A + ++ G P+ T
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 821
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SY L+ A+G+ + +A VF + KPN +SY+ L+DA+ + K A
Sbjct: 395 GLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEA 454
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
+S++ EM G P ++ + C R D V AK I +N
Sbjct: 455 ISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELN 504
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I SYNAL+ A+ EA +F+ L G++P+ +SY+ L++A+ + + A
Sbjct: 360 GVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKA 419
Query: 161 LSVIDEMVNAGFAPSK 176
V +EM P+K
Sbjct: 420 REVFNEMRKNSCKPNK 435
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ +Y ++I+++ + VF+ +V+ GVKPN +SY+ L+ A+ ++ A
Sbjct: 327 SPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFG 386
Query: 163 VIDEMVNAGFAP 174
+ + G P
Sbjct: 387 IFKLLKQNGLRP 398
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + +A +F + KP+A Y+ L++AH + A++++D+M+
Sbjct: 156 YGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDML 215
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T V C
Sbjct: 216 RAAIPPSRATYNNVVNAC 233
>gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N DL A+ + + GL P + Y+++I + K+ EA VF+ ++ GV P+
Sbjct: 440 CNHGDLASAFGLLDQMNER-GLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPD 498
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
A+ Y ++ + NR A + D+M+ GF PS + V V+E
Sbjct: 499 AIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKE 547
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
GSSF P+++ YN +I F + +A FE + + GV PN +++++L++ H +
Sbjct: 678 GSSF--MPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGE 735
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A+ + ++M G AP T
Sbjct: 736 IDHAIGLFNKMNADGLAPDGIT 757
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SSF LTP +HSY LI A K + E +++ ++ +GV P+ + + L+ +
Sbjct: 246 SSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHEL 305
Query: 158 KAALSVIDEMVNAG 171
AL ++ + G
Sbjct: 306 HLALKILQAIAKNG 319
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKT 122
K AI I+GC L R + EA + G+ PD Y +I + K ++
Sbjct: 461 KPSVAIYDSIIGC-----LSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRA 515
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++F+ ++ G +P++ SY+ ++ + S + +M+ GF P+
Sbjct: 516 IEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPN 568
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD ++YN LI+ F KL + + + G++PN ++Y +++ +
Sbjct: 178 MGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDC 237
Query: 160 ALSVIDEMVNAGFAPS 175
AL+++ M + PS
Sbjct: 238 ALTLLSSMSSFNLTPS 253
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +D A+ F+ + GL IH Y L Y + ++ EA + S
Sbjct: 84 LIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESE 143
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G + M Y+ L+ + + + A+ V M+ G P T
Sbjct: 144 GHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYT 186
>gi|225452238|ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
[Vitis vinifera]
Length = 763
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A + F + G P I SY AL+ A K K EASRV+EH+V
Sbjct: 523 NAVLVACSKAAETSAAVEIFRRMVEQ-GEKPTIISYGALLSALEKGKLYDEASRVWEHMV 581
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+GV+PN +Y+++ + + S++ EM G + T + C R
Sbjct: 582 KMGVEPNLYAYTIMASICVGQGKLQRVDSILREMETLGIDATVVTYNAIISGCAR 636
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A +F +V G KP +SY L+ A + A
Sbjct: 514 GLKPGSREWNAVLVACSKAAETSAAVEIFRRMVEQGEKPTIISYGALLSALEKGKLYDEA 573
Query: 161 LSVIDEMVNAGFAPS 175
V + MV G P+
Sbjct: 574 SRVWEHMVKMGVEPN 588
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV---DAHLTNRDQKA----ALS 162
N +I+ GK KK + A ++E L+ G KPN +SY L+V + LT +K +
Sbjct: 446 NHIIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELVVSHFNILLTAARKKGIWRWGVR 505
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P V C +
Sbjct: 506 LLNKMEDKGLKPGSREWNAVLVACSK 531
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ YN+L+ A + +K +V + G+ PN ++Y+ L+ +L AL++
Sbjct: 243 PNLFVYNSLLGAVKQSEKFALVEKVMNDMAREGILPNVVTYNTLMSIYLEQGRSVEALNI 302
Query: 164 IDEMVNAGFAPS 175
++E+ G PS
Sbjct: 303 LEEIQKNGLCPS 314
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ L + + V A +I G +D A + F + S GLT + +Y LI
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQG 361
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA---GF 172
FG++ K A VF H+VS GV PN +Y++L+ N K AL + ++M G
Sbjct: 362 FGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGV 421
Query: 173 APSKET 178
AP+ T
Sbjct: 422 APNIWT 427
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PDI ++ +LI F + EA + +V +G+KP+ + Y+ ++D+ N
Sbjct: 136 LGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY 195
Query: 160 ALSVIDEMVNAGFAP 174
ALS+ D+M N G P
Sbjct: 196 ALSLFDQMENYGIRP 210
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVIL-GCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+ +Y ++ +S A + + IN + GC +D A Q F + + G PD+ +Y
Sbjct: 267 EELYNEMIRMSIAPNIFTYTSLINGFCMEGC-----VDEARQMFYLMETK-GCFPDVVAY 320
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+LI F K KK +A ++F + G+ N ++Y+ L+ A V MV+
Sbjct: 321 TSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVS 380
Query: 170 AGFAPSKET 178
G P+ T
Sbjct: 381 RGVPPNIRT 389
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ PD+ ++NALI AF K K +A ++ ++ + + PN +Y+ L++
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L+ A F + G+ P++++YN+LI GK K EA +++E L+
Sbjct: 1048 NLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1106
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G KPN +Y+ L+ + + +A + M+ G P+ T
Sbjct: 1107 TKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A Q +E + S G+ PD+ + NA+++ K + A RVF L ++GV P+ ++Y+++
Sbjct: 502 KAIQRYELMKSK-GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 560
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ A+ + +M+ P
Sbjct: 561 IKCCSKASKFDEAVKIFYDMIENNCVP 587
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ L+ AFGK + + + + GVKPN SY++ + R A
Sbjct: 269 GVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEA 328
Query: 161 LSVIDEMVNAGFAP 174
++ EM N G P
Sbjct: 329 YRILAEMENEGCKP 342
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 9/163 (5%)
Query: 30 SPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
SP T Y +++ C K E + Y +EN + V +N +I
Sbjct: 551 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD-----VLVVNSLIDTLYKAGRG 605
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A+Q F + L P +YN L+ G+ K E + E + PN ++Y+
Sbjct: 606 DEAWQIFYQL-KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 664
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++D N AL ++ M G P + V V+E
Sbjct: 665 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N +A+ +V A VI + + A + F+ + G+ P+ +SYN+LI
Sbjct: 399 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLIS 457
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + +A +F+++ G KPN ++ L ++ + + + A+ + M + G P
Sbjct: 458 GFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP 517
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + ++YN L+Y K EA V++ ++ GV P+ +YS+L+ A RD +
Sbjct: 234 GIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETV 293
Query: 161 LSVIDEMVNAGFAPS 175
L ++ EM G P+
Sbjct: 294 LWLLREMEAHGVKPN 308
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD +YN L+ A GK + E +V E + G + ++Y+ ++ + +R +
Sbjct: 863 LGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQ 922
Query: 160 ALSVIDEMVNAGFAPSKET 178
A+ + +++ GF+P+ T
Sbjct: 923 AIDLYYNLMSQGFSPTPCT 941
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD Y + N A+ V + N +I RAY+ FE +G G+TPD+ ++
Sbjct: 305 LDKAYMMMVNKMEAKG-LCDVVSYNTIIKALCTASHTKRAYKLFEEMGGK-GITPDVVTF 362
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
LI AF + + A ++ + + LG+ P+ + Y+ +VD A SV +MV
Sbjct: 363 TILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVE 422
Query: 170 AGFAP 174
+G P
Sbjct: 423 SGITP 427
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ SYNALI + + EA ++E + + G P+ +++ L++ + + A
Sbjct: 424 GITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVA 483
Query: 161 LSVIDEMVNAGFA 173
V D+M+ GF
Sbjct: 484 CRVWDQMMEKGFT 496
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+AY + GL D+ SYN +I A T A ++FE + G+ P+ ++++
Sbjct: 305 LDKAYMMMVNKMEAKGLC-DVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFT 363
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+L+ A L A ++D+M G P +
Sbjct: 364 ILIKAFLREGSSNIAKKLLDQMTGLGLLPDR 394
>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 426
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
+ L+ ++ N+ ALSV EM
Sbjct: 118 TTLLTMYVENKKFLEALSVFSEM 140
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V F+ S+ EP ++ N +I G ++ + F + S G+ PD+ +YN +
Sbjct: 1101 VVFEYLQRSKMEP---TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTM 1156
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F + EA +F+ + G PN+ Y+ L+ A L + D++A+ +I EM + GF
Sbjct: 1157 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 1216
Query: 173 APSKETLKKV 182
A T+ V
Sbjct: 1217 AGDASTIGLV 1226
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q FE + S PD+ +YN LI F K K+ E VF + G+ N ++Y+
Sbjct: 991 LDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 1049
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L+ D A + EMV+ G P+
Sbjct: 1050 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 1079
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S PP ++ N ++ G L++A FE + S + P I++YN +I
Sbjct: 1070 EMVSDGVPP--NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 1126
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K + +F +L GVKP+ ++Y+ ++ ++ A ++ EM G P+
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 1186
Query: 178 TLKKVRRRCVREMDEESN 195
+ R +R+ D E++
Sbjct: 1187 CYNTLIRARLRDGDREAS 1204
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 63 AEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
E YK + A N +I ++ A+ F+ + G+ P++ +Y AL+ +
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGLCNSSR 343
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A+R+ ++ + PN ++YS L+DA + N A + +EMV P T
Sbjct: 344 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 403
Query: 182 -VRRRCVREMDEESNDRVEALAKK 204
+ C+ + +E+N + + K
Sbjct: 404 LINGLCLHDRIDEANQMFDLMVSK 427
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TP++ +Y+AL+ AF K K EA +FE +V + + P+ ++YS L++ + A
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 418
Query: 162 SVIDEMVNAG 171
+ D MV+ G
Sbjct: 419 QMFDLMVSKG 428
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ EP V N +I G +D A F+ + + G+ P++ +Y++LI
Sbjct: 864 GKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYG 919
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ +ASR+ ++ + P+ ++S L+DA + A + DEMV PS
Sbjct: 920 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 974
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V N +I G ++ + F + S GL + +YN LI + A
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVTYNILIQGLFQAGDCDMAQ 1065
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ +VS GV PN M+Y+ L+D N + A+ V + + + P+
Sbjct: 1066 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 1114
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ + S+ Q++NL Y INC L A + G P+I
Sbjct: 711 FDVVISLGEQMQNLGIPHNHYTYSILINCF----CRRSQLPLALAVLGKM-MKLGYEPNI 765
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+ ++L+ + K+ EA + + + G +PN ++++ L+ + A+++ID
Sbjct: 766 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 825
Query: 167 MVNAGFAP 174
MV G P
Sbjct: 826 MVAKGCQP 833
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +++ALI AF K K EA ++++ +V + P+ ++YS L++ + A
Sbjct: 936 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 995
Query: 162 SVIDEMVNAGFAP 174
+ + MV+ P
Sbjct: 996 QMFEFMVSKHCFP 1008
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I ++ L+ A K+ K + E + +LG+ N +YS+L++ AL+V
Sbjct: 693 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 752
Query: 164 IDEMVNAGFAPSKETL 179
+ +M+ G+ P+ TL
Sbjct: 753 LGKMMKLGYEPNIVTL 768
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P+ S+ + ++ A + D E + + G+ + ++Y+ LI F + + A
Sbjct: 691 PFPSIIEFSKLLSAIAKMNKFDVVISLGEQM-QNLGIPHNHYTYSILINCFCRRSQLPLA 749
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V ++ LG +PN ++ S L++ + ++ A++++D+M G+ P+ T
Sbjct: 750 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 802
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLY------------PLVVACSRKGFE 48
+G + + TL + + GD+ E+ F FT L L+ +C + G
Sbjct: 630 VGPNEHTYTTLMQGYASLGDT----EKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSG-- 683
Query: 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+ S + +S P ++ N +I G A D+ A + + GL PDIH+
Sbjct: 684 RMQSALAVTKEMSAKNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMRKE-GLLPDIHT 741
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y + I A K +A+ + + + + G+KPN +Y+ L++ + ALS +EM
Sbjct: 742 YTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMK 801
Query: 169 NAGFAPSK 176
AGF P K
Sbjct: 802 LAGFKPDK 809
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A ++ RA + F+ + S G P +H+YNALI + ++ +A + + +
Sbjct: 570 IIHGFARAGEMRRALEIFDMMRRS-GCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVA 628
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
GV PN +Y+ L+ + + D + A + N G T + + + C + +S
Sbjct: 629 GVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQS- 687
Query: 196 DRVEALAKKFDIRMNTENRKNILFNL 221
ALA ++ R ++N+
Sbjct: 688 ----ALAVTKEMSAKNIPRNTFVYNI 709
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C D+ +A + + + +S G+ P++ +Y LI + + +A FE + G
Sbjct: 746 INACCKAGDMQKATEIIQEMEAS-GIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAG 804
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
KP+ Y LV + L+ LSV EM+ + T RC+R++
Sbjct: 805 FKPDKAVYHCLVTSLLSRATFAQSYVYSGLLSVCREMIESEMIVDMGTAVHW-SRCLRKI 863
Query: 191 DEESNDRVEALAKKFDIRMNTEN 213
+ + EAL K F + N
Sbjct: 864 ERTGGELTEALQKTFPPDWTSHN 886
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + SY LI + K+ K +A + + + G+K N +YS+L++ L +D A
Sbjct: 454 GFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANA 513
Query: 161 LSVIDEMVNAGFAP 174
SV ++ G P
Sbjct: 514 FSVFEDFTKDGLKP 527
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D ++A+Q F + + GL D+++Y AL+ + K + A V + + +
Sbjct: 640 LMQGYASLGDTEKAFQYFTVLRNE-GLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAK 698
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+ N Y++L+D D A ++ +M G P T C + D
Sbjct: 699 NIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGD 754
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
L+ + ++AV ++F P Y ++ +G+ A + FE + + G++P++
Sbjct: 262 LETQPENWQAVVTAFERIKKPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHV 321
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
YS L+ A+ RD + AL + +M G
Sbjct: 322 YSSLIHAYAVGRDMEEALHCVRKMKEEGI 350
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P ++ +I+ F + + A +F+ + G P +Y+ L+ + R A+++
Sbjct: 562 PTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAI 621
Query: 164 IDEMVNAGFAPSKET 178
+DEM AG P++ T
Sbjct: 622 LDEMNVAGVGPNEHT 636
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ SV + C+I + + +A + + + S G+ ++ +Y+ LI F KLK A
Sbjct: 456 FPSVISYGCLINLYTKVGKVSKALEISKMMKMS-GIKHNMKTYSMLINGFLKLKDWANAF 514
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
VFE G+KP+ + Y+ ++ A + A+ ++ +M P+ T
Sbjct: 515 SVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTF 567
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A QTFE++ + G+ P H Y++LI+A+ + EA + G++ ++Y
Sbjct: 299 DMHHARQTFESM-RARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTY 357
Query: 145 SLLVD--AHLTNRD--------QKAALSVIDEMVNAGFAPSKETLKKVRR--RCVREMDE 192
S++V A + N D K L ++ ++ G + + + R VREM+E
Sbjct: 358 SIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEE 417
Query: 193 ESND 196
+ D
Sbjct: 418 QGID 421
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +I D ++A++ F+A+ G D+ +YN L+ A K EA +F ++S
Sbjct: 222 LISGWGDIGDSEKAHELFQAMLEQ-GCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSK 280
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
V+P+A +YS+ + ++ D ++AL V+D+M P+ T ++R C E EE+
Sbjct: 281 RVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEA 340
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ + P++ +YN +I K + EA + + ++S GV+P+ SY+ + H + +
Sbjct: 315 YNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNR 374
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A+ ++ M P + T V + +R
Sbjct: 375 AIRLMFRMEKDNCLPDRHTYNMVLKLLIR 403
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS+ EM
Sbjct: 118 STLLTMYVENKKFLEALSIFAEM 140
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQT 92
TS PL+ + G E D + E + R P ++ + N VI G + L++A
Sbjct: 129 TSCNPLMSGLVKVG-EIGDMEFVYKEMIRRRIEP--TLISFNIVINGLCKVGKLNKAGDI 185
Query: 93 FEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
E + G++ ++ +YN LI + GK+ K ++A + + + + G+ PN +++++L+D
Sbjct: 186 IEDM-KVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILID 244
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPS 175
+++ AA+ V EM G P+
Sbjct: 245 GFCKDKNVSAAMKVFAEMNRQGVKPN 270
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G N ++ A + + +S L P+I ++NAL+ F K K +A +
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQMVNSC-LKPNIITHNALLNGFCKNKMVKQAGEL 328
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ + G+ PN +Y++L+DA+ + + + A ++ M+ G P T
Sbjct: 329 FDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVST 378
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ ++N LI F K K A +VF + GVKPN ++Y+ L++ N A
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEA 290
Query: 161 LSVIDEMVNAGFAPS 175
++ D+MVN+ P+
Sbjct: 291 TALRDQMVNSCLKPN 305
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PD+ +YN LI + K EA+R + + + +K + ++Y++L+D+ + K
Sbjct: 371 GVCPDVSTYNCLIAGLCR-KGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKK 429
Query: 160 ALSVIDEMVNAGFAPSKET 178
AL ++DEM G PS+ T
Sbjct: 430 ALRLLDEMCRKGLKPSQLT 448
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 12 NEFETAYGDSIIDM-EEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYK 68
N+ G+ DM ++ +P + Y +++ C + E ++Y + L + P
Sbjct: 319 NKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM--LGKGVCP-- 374
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V+ NC+I G DL+ A + + L D+ +YN LI + + +A R+
Sbjct: 375 DVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH-LKADLITYNILIDSLCNKGEMKKALRL 433
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ + G+KP+ ++Y+ ++D + + +AAL++ +M G
Sbjct: 434 LDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN+LI K EA+ + + +V+ +KPN ++++ L++ N+ K A
Sbjct: 266 GVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQA 325
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D+M G P+ T
Sbjct: 326 GELFDDMPKQGITPNVTT 343
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +D AY E + + L P+ ++YN LI K KK EAS + ++++
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACL-PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM 573
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GVKP ++Y++L+ L + AL V + MV+ G+ P
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N +I G + DL+ AY+ + + GL PD +Y+ I K + EA +
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDTLCKEGRVEEAGTL 496
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ + + GVK N + Y+ L+D + A S+++ M+N P+ T
Sbjct: 497 FDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYT 546
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 61 SRAEPPYKSVAAINCVILGCANIW---DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
+R+E SV+ +N V + A++W + + A + FE + G T D+ Y ALI F
Sbjct: 703 TRSEIGIDSVSNVNSVDI--ADVWKTLEYEIALKLFEKM-VEHGCTIDVSIYGALIAGFC 759
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ ++ EA + H+ G+ P+ Y+ L+D A+ ++D MV G P E
Sbjct: 760 QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE 819
Query: 178 TLK 180
+ K
Sbjct: 820 SYK 822
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +Y LIYA + EA +F + G +PN +Y++L+D A +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356
Query: 164 IDEMVNAGFAPSKET 178
+ EM G PS T
Sbjct: 357 LSEMSEKGLIPSVVT 371
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++H+Y LI K K EA ++ + G+ P+ ++Y+ L+D + A
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388
Query: 161 LSVIDEMVNAGFAPSKET 178
++D M + P+ T
Sbjct: 389 FEILDLMESNSCGPNTRT 406
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ P + +Y LI K A +VF H+VSLG +P+ +Y+ + A+ + +
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631
Query: 159 AALSVIDEMVNAGFAP 174
VI +M G P
Sbjct: 632 EVDDVIAKMNEEGILP 647
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F + S G PD+ +Y A ++A+ E V + G+ P+ ++Y++
Sbjct: 596 DHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654
Query: 147 LVDAH----LTNRDQKAALSVIDEMVNAGFAPS 175
L+D + LT+R A + MV+ G PS
Sbjct: 655 LIDGYARLGLTHR----AFDFLKCMVDTGCKPS 683
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P+I+++NA++ + K+ EA +V G+ P+ +Y+ L+ H N+ A
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249
Query: 162 SVIDEMVNAG 171
V M G
Sbjct: 250 EVFLIMPQKG 259
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P + +YNALI + K +A + + + S PN +Y+ L+ R
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201
A++++++M+ +PS T + + D ES R+ +L
Sbjct: 421 HKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + F+++ S GL+PD+ +YN+L+ + K +++EA ++ + L S VKP+ +SY+ +
Sbjct: 619 KATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 677
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ K A ++ EM+ G AP
Sbjct: 678 INGFCKQGLIKEAQRILSEMIADGMAP 704
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI C LD+A FE + + G P + +YNAL+ FGK EA RV + +
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKAR-GHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDS 315
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G +P+A++Y+ L + + A +D M + G P+ T V
Sbjct: 316 GCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTV 362
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 38 LVVACSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
++ AC R G LD E+L +R P V N ++ + A + + +
Sbjct: 257 VIAACGRDGL--LDQAVAFFEDLKARGHVP--CVVTYNALLQVFGKAGNYTEALRVLKEM 312
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G PD +YN L + + EA++ + + S G+ PN +Y+ ++ A+
Sbjct: 313 EDS-GCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 371
Query: 157 QKAALSVIDEMVNAGFAPSKETL--------KKVRRRCVREMDEE 193
AL++ D M G+ P+ T KK R + EM EE
Sbjct: 372 VDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEE 416
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ SYN +I F K EA R+ +++ G+ P ++Y LV + + A
Sbjct: 667 VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAR 726
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
V++ M++ P + T ++V
Sbjct: 727 EVVNYMIHHNLKPMELTYRRV 747
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ +YN LI A+G+ A ++++ ++S G P +Y+ L++ D
Sbjct: 454 SCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWS 513
Query: 159 AALSVIDEMVNAGFAPSKET 178
A S++ +M+ GF P+ ++
Sbjct: 514 TAQSIVSKMLKNGFKPNDQS 533
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TP+ ++N ++ GK +RV + S GV+ + +Y+ L+ A+ +
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 477
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + DEM+++GF P T + R+ D
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ ++ + SS G TP + +YNAL+ + A + ++ G KPN SYSLL+
Sbjct: 480 AFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVR-EMDEESNDRVEALAKK 204
+ + S+ E+ PS TL +C R E E++ V+A K
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598
Query: 205 FDI 207
D+
Sbjct: 599 PDL 601
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++PD +Y LI FG+ K E +F ++S G+KP+ ++Y+ L+D + + A
Sbjct: 394 ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAF 453
Query: 162 SVIDEMVNAGFAPS 175
S+ +EMV G P+
Sbjct: 454 SLHNEMVQMGMTPN 467
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
V +G++ + SYN +IY+ +L K EA R+ + P+ +SYS ++D +
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307
Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKV 182
+ K AL ++D+M G P++ T +
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSI 334
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R+ P V + + VI G ++ +L +A + + + GL P+ ++YN++I K+ K
Sbjct: 287 RSSTP--DVVSYSTVIDGYCHLGELKKALKLMDDMQIK-GLKPNRYTYNSIILLLCKIGK 343
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+FEA +V ++S + P+ + Y+ L+ + A DEM++ +P
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISP 396
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+D+A++ + + GL P + ++N L+ F L + R+ ++ G+ P+A++Y
Sbjct: 553 DIDKAHKLLQEMLDR-GLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+ H + M N G AP T
Sbjct: 612 NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R T +Y ++ N A N +I G +L A+ ++ + G
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDS----NTYNILIKGHCKARNLKEAWFLYKEMIEK-G 673
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
P + SYNALI F K +K EA +FE + G+ + Y+ VD D + L
Sbjct: 674 YVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITL 733
Query: 162 SVIDEMV 168
++ DE +
Sbjct: 734 NLCDEAI 740
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 19 GDSIIDMEEIFSPFTS--------LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
G +I+ + +F S Y ++ K E +++ E + P ++
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP--NI 468
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+I G +LD A + + + GL ++ YN+++ K +A ++ +
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G+ P+A++Y+ ++DA+ D A ++ EM++ G P+ T
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI K + EA +++ ++ G P SY+ L+ R A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEA 697
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
+ +EM G E C E D E
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD ++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDXYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H A+ + M++ P T + +
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D +++ND ++ + K
Sbjct: 295 KGDLKQANDLIDEMVMK 311
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVT 424
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A+ + + +V G+KP+ ++Y+ L+D D A
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAF 337
Query: 162 SVIDEMVN 169
M+
Sbjct: 338 EHRKRMIQ 345
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS+ EM
Sbjct: 118 STLLTMYVENKKFLEALSIFAEM 140
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|226287567|gb|EEH43080.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1511
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A ++ + + D R F+A +G ++ N LI+ + K F+A
Sbjct: 539 SEEAYRIALMAFSRLGDFRRVDNLFKAYVKHYGNPKSLYFVNPLIHVNAAVGKVFQAREQ 598
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E L + + P+ S+++L+ AH +RD+ AL + EM++ GF P TL
Sbjct: 599 LESLPNRFSLSPDITSWNILLTAHAKSRDKPGALKTLQEMMDRGFKPDSHTL 650
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
KS+ +N +I A + + +A + E++ + F L+PDI S+N L+ A K + A +
Sbjct: 574 KSLYFVNPLIHVNAAVGKVFQAREQLESLPNRFSLSPDITSWNILLTAHAKSRDKPGALK 633
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
+ ++ G KP++ + +L+
Sbjct: 634 TLQEMMDRGFKPDSHTLGILM 654
>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 610
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D + AY+ + + + PD+ SYN ++ K K EAS +FE +
Sbjct: 297 NVMINGFCKDKDFETAYKILDEMMEN-RCKPDVISYNVILGELCKDGKWSEASDLFEDMP 355
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G P+ +SY ++ D + K A ++DEMV GFAP ++ K R + DE+
Sbjct: 356 RRGCAPDVVSYRIVFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNGDED 415
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + F+++ S GL+PD+ +YN+L+ + K +++EA ++ + L S VKP+ +SY+ +
Sbjct: 528 KATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 586
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ K A ++ EM+ G AP
Sbjct: 587 INGFCKQGLIKEAQRILSEMIADGMAP 613
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI C LD+A FE + + G P + +YNAL+ FGK EA RV + +
Sbjct: 166 VIAACGRDGLLDQAVAFFEDLKAR-GHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDS 224
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G +P+A++Y+ L + + A +D M + G P+ T V
Sbjct: 225 GCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTV 271
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 38 LVVACSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
++ AC R G LD E+L +R P V N ++ + A + + +
Sbjct: 166 VIAACGRDGL--LDQAVAFFEDLKARGHVP--CVVTYNALLQVFGKAGNYTEALRVLKEM 221
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G PD +YN L + + EA++ + + S G+ PN +Y+ ++ A+
Sbjct: 222 EDS-GCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 280
Query: 157 QKAALSVIDEMVNAGFAPSKETL--------KKVRRRCVREMDEE 193
AL++ D M G+ P+ T KK R + EM EE
Sbjct: 281 VDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEE 325
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ +YN LI A+G+ A ++++ ++S G P +Y+ L++ D
Sbjct: 363 SCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWS 422
Query: 159 AALSVIDEMVNAGFAPSKET 178
A S++ +M+ GF P+ ++
Sbjct: 423 TAQSIVSKMLKNGFKPNDQS 442
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ SYN +I F K EA R+ +++ G+ P ++Y LV + + A
Sbjct: 576 VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAR 635
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
V++ M++ P + T ++V
Sbjct: 636 EVVNYMIHHNLKPMELTYRRV 656
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TP+ ++N ++ GK +RV + S GV+ + +Y+ L+ A+ +
Sbjct: 327 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 386
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + DEM+++GF P T + R+ D
Sbjct: 387 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 420
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ ++ + SS G TP + +YNAL+ + A + ++ G KPN SYSLL+
Sbjct: 389 AFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 447
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVR-EMDEESNDRVEALAKK 204
+ + S+ E+ PS TL +C R E E++ V+A K
Sbjct: 448 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 507
Query: 205 FDI 207
D+
Sbjct: 508 PDL 510
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++PD +Y LI FG+ K E +F ++S G+KP+ ++Y+ L+D + + A
Sbjct: 394 ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAF 453
Query: 162 SVIDEMVNAGFAPS 175
S+ +EMV G P+
Sbjct: 454 SLHNEMVQMGMTPN 467
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
V +G++ + SYN +IY+ +L K EA R+ + P+ +SYS ++D +
Sbjct: 248 VFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLG 307
Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKV 182
+ K AL ++D+M G P++ T +
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSI 334
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R+ P V + + VI G ++ +L +A + + + GL P+ ++YN++I K+ K
Sbjct: 287 RSSTP--DVVSYSTVIDGYCHLGELKKALKLMDDMQIK-GLKPNRYTYNSIILLLCKIGK 343
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+FEA +V ++S + P+ + Y+ L+ + A DEM++ +P
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISP 396
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+D+A++ + + GL P + ++N L+ F L + R+ ++ G+ P+A++Y
Sbjct: 553 DIDKAHKLLQEMLDR-GLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+ H + M N G AP T
Sbjct: 612 NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R T +Y ++ N A N +I G +L A+ ++ + G
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDS----NTYNILIKGHCKARNLKEAWFLYKEMIEK-G 673
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
P + SYNALI F K KK EA +FE + G+ + Y+ VD D + L
Sbjct: 674 YVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITL 733
Query: 162 SVIDEMV 168
++ DE +
Sbjct: 734 NLCDEAI 740
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 19 GDSIIDMEEIFSPFTS--------LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
G +I+ + +F S Y ++ K E +++ E + P ++
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP--NI 468
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+I G +LD A + + + GL ++ YN+++ K +A ++ +
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G+ P+A++Y+ ++DA+ D A ++ EM++ G P+ T
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI K + EA +++ ++ G P SY+ L+ + A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEA 697
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
+ +EM G E C E D E
Sbjct: 698 RELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP++ +Y ALI+A+ K KK A+ +FE ++S G PN ++YS L+D H + A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKA 607
Query: 161 LSVIDEMVNAGFAP 174
+ + M + P
Sbjct: 608 CQIFERMCGSKDVP 621
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D AY+ + + G P++ +Y A+I FG++ K + E + S
Sbjct: 751 MIDGLCKVGKTDEAYKLMQMMEEK-GCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSK 809
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN ++Y +L+D N A ++++EM + +KV
Sbjct: 810 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKV 856
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N ++ A+ FE + GL D+++Y ++ +F K +A + F + +G PN
Sbjct: 494 CNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L + A + + M++ G P+
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y +I K+ KT EA ++ + + G +PN ++Y+ ++D + L +
Sbjct: 743 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLEL 802
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ M + G AP+ T + + C +
Sbjct: 803 LERMGSKGVAPNYVTYRVLIDHCCK 827
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+ G ++ D+D ++ ++ S P++ Y AL+ F KL + EA ++ + + G
Sbjct: 614 MCGSKDVPDVDMYFKQYDDDNSE---RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEG 670
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+PN + Y L+D A V EM GF
Sbjct: 671 CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGF 706
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
N+ E Y S N ++ D AY+ + + G TP YN LI +
Sbjct: 361 NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKC-GHTPGYVVYNILIGSICG 419
Query: 119 LKKTFE------ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
K + A + + +++ GV N ++ S + + A SVI EM+ GF
Sbjct: 420 DKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGF 479
Query: 173 APSKETLKKV 182
P T KV
Sbjct: 480 IPDTSTYSKV 489
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C K +D +YF+ + +E P +V ++ G + ++ A + +A+ S G
Sbjct: 615 CGSKDVPDVD-MYFKQYDDDNSERP--NVVIYGALLDGFCKLHRVEEARKLLDAM-SMEG 670
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
P+ Y+ALI K+ K EA V + G +YS L+D + + Q A
Sbjct: 671 CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 730
Query: 162 SVIDEMVNAGFAPS 175
V+ +M+ AP+
Sbjct: 731 KVLSKMLENSCAPN 744
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + LD A Q +A S G +++Y++LI + K+K+ AS+V ++
Sbjct: 681 LIDGLCKVGKLDEA-QEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 739
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
PN + Y+ ++D A ++ M G P+ T
Sbjct: 740 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 782
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV N +I G ++ RA + E + + G PDI +YN L+ F K+ F A +
Sbjct: 15 RSVEHFNVLIDGYCRNGEISRAVELLEGMKTE-GPAPDIVTYNTLMNGFCKIGDLFTAKK 73
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + ++PN ++Y+ L+DA+ ++ + AL + DEM P
Sbjct: 74 LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVP 120
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVG 97
+ TL S + +L + RA +K + N +I G L +A+ +
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G++P++ +YN L+ + EA+ + + G+ PNA +Y +LV H +
Sbjct: 604 TE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNM 662
Query: 158 KAALSVIDEMVNAGFAPSKET 178
K + + EM+ GF P T
Sbjct: 663 KECVKLYCEMITKGFVPKTRT 683
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N +I G + + ++F GL PD ++N +I A+ K A ++
Sbjct: 402 VVAYNVLINGLFKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ S G+KPN+++ ++LV + + + ++++M+ GF P+ T K V
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ D+ +YN LI F +L A+ VF+ ++ G+ + ++Y+ L+ + + K
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +V +M+ G +P+ ET
Sbjct: 594 KAFAVHSQMLTEGVSPNVET 613
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV------------ 148
G P +YN LI F K KK +A + + + G+ PN+ +Y +L+
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPEL 735
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ L Q A + +EM GF P + TL
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y+ L+ GK+ E +++ +++ G P +Y++L+ + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM G P+ T
Sbjct: 701 KELMQEMQVRGIPPNSST 718
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +Y ++ K K EA VF + +GV PN SY+ L+D+ + A
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177
Query: 162 SVIDEMVNAGFA 173
+ MV G
Sbjct: 178 VLQGRMVVRGIG 189
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + F+++ S GL+PD+ +YN+L+ + K +++EA ++ + L S VKP+ +SY+ +
Sbjct: 619 KATEMFDSIKQS-GLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 677
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ K A ++ EM+ G AP
Sbjct: 678 INGFCKQGLIKEAQRILSEMIADGMAP 704
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI C LD+A FE + + G P + +YNAL+ FGK EA RV + +
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKAR-GHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDS 315
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G +P+A++Y+ L + + A +D M + G P+ T V
Sbjct: 316 GCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTV 362
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
++ AC R G LD E+L K+ + CV+ A + +A EA+
Sbjct: 257 VIAACGRDGL--LDQAVAFFEDL-------KARGHVPCVVTYNALLQVFGKAGNYTEALR 307
Query: 98 -----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
G PD +YN L + + EA++ + + S G+ PN +Y+ ++ A+
Sbjct: 308 VLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA 367
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKETL--------KKVRRRCVREMDEE 193
AL++ D M G+ P+ T KK R + EM EE
Sbjct: 368 NVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEE 416
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ SYN +I F K EA R+ +++ G+ P ++Y LV + + A
Sbjct: 667 VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAR 726
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
V++ M++ P + T ++V
Sbjct: 727 EVVNYMIHHNLKPMELTYRRV 747
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ +YN LI A+G+ A ++++ ++S G P +Y+ L++ D
Sbjct: 454 SCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWS 513
Query: 159 AALSVIDEMVNAGFAPSKET 178
A S++ +M+ GF P+ ++
Sbjct: 514 TAQSIVSKMLKNGFKPNDQS 533
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TP+ ++N ++ GK +RV + S GV+ + +Y+ L+ A+ +
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSR 477
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + DEM+++GF P T + R+ D
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ ++ + SS G TP + +YNAL+ + A + ++ G KPN SYSLL+
Sbjct: 480 AFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVR-EMDEESNDRVEALAKK 204
+ + S+ E+ PS TL +C R E E++ V+A K
Sbjct: 539 QCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598
Query: 205 FDI 207
D+
Sbjct: 599 PDL 601
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 25 MEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
ME SP Y LVV C + + N + A+ + N +I G
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL----NDAIAKGCIPDIFTFNTLIDGYCK 473
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
++D+A + + + S G+TPD+ +YN L+ K +K F+ ++ G PN +
Sbjct: 474 QRNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNII 532
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+Y++L+++ +R A+ + EM G P TL
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + E++ S GLTPD+ SYN LI F K K EA +V
Sbjct: 255 NIFIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECYLHKMV 313
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GV+PN +Y+ +++ + A ++ + + GF P + T
Sbjct: 314 NSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++N I + EA+R+ E +VS G+ P+ +SY+ L+ + A
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +MVN+G P++ T
Sbjct: 306 ECYLHKMVNSGVEPNEFT 323
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
AY F+ + G+ PDI ++N LI+ K E+ ++F ++ GV PN ++++ +
Sbjct: 200 AYHLFDEMLKQ-GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
A +++ +V+ G P
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTP 284
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 20 DSIID-----MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAIN 74
D+++D +E+ +P Y +++ K + +++ E +R P + +
Sbjct: 513 DNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP--DIVTLC 570
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I G + +LD+AY+ F + + + +N +I AF A ++F +
Sbjct: 571 TLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGG 630
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
P+ +Y +++D++ + A + + E ++ G PS T KV
Sbjct: 631 SDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKV 678
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ + EP +S AI +++ + Y + +G + PD++++ +
Sbjct: 99 FERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG----IYPDVYTHTIRMK 154
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F + A R+ ++ G + NA+SY ++ Q A + DEM+ G P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214
Query: 175 SKETLKKV 182
T K+
Sbjct: 215 DILTFNKL 222
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN +I F K A ++ + G P+ +YS L++ + D A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375
Query: 161 LSVIDEMVNAGFAPS 175
++V E + GF S
Sbjct: 376 MAVFYEAMEKGFKHS 390
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV N +I G ++ RA + E + + G PDI +YN L+ F K+ F A +
Sbjct: 15 RSVEHFNVLIDGYCRNGEISRAVELLEGMKTE-GPAPDIVTYNTLMNGFCKIGDLFTAKK 73
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + ++PN ++Y+ L+DA+ ++ + AL + DEM P
Sbjct: 74 LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVP 120
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVG 97
+ TL S + +L + RA +K + N +I G L +A+ +
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G++P++ +YN L+ + EA+ + + G+ PNA +Y +LV H +
Sbjct: 604 TE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNM 662
Query: 158 KAALSVIDEMVNAGFAPSKET 178
K + + EM+ GF P T
Sbjct: 663 KECVKLYCEMITKGFVPKTRT 683
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N +I G + + ++F GL PD ++N +I A+ K A ++
Sbjct: 402 VVAYNVLINGLFKLGKYES--ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ S G+KPN+++ ++LV + + + ++++M+ GF P+ T K V
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ D+ +YN LI F +L A+ VF+ ++ G+ + ++Y+ L+ + + K
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +V +M+ G +P+ ET
Sbjct: 594 KAFAVHSQMLTEGVSPNVET 613
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV------------ 148
G P +YN LI F K KK +A + + + G+ PN+ +Y +L+
Sbjct: 676 GFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPEL 735
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ L Q A + +EM GF P + TL
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y+ L+ GK+ E +++ +++ G P +Y++L+ + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM G P+ T
Sbjct: 701 KELMQEMQVRGIPPNSST 718
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +Y ++ K K EA VF + +GV PN SY+ L+D+ + A
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177
Query: 162 SVIDEMVNAGFA 173
+ MV G
Sbjct: 178 VLQGRMVVRGIG 189
>gi|403418372|emb|CCM05072.1| predicted protein [Fibroporia radiculosa]
Length = 601
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
+ +D + LE L + E V A+N VI + DL RA ++A +S G+ P++
Sbjct: 384 DAIDEAWVHLETL-KQEGNTVDVTALNVVIQASIALGDLQRAIGCYKA-SASLGVAPNVD 441
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
++N L+ + R+ + VKP+ +Y L+ LT + + A ++EM
Sbjct: 442 TFNLLLAGCIATQHRQLGDRLLSEMKEAAVKPDVRTYERLIVLCLTQANYEDAFFYLEEM 501
Query: 168 VNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201
G P + + R+CV+ D VE L
Sbjct: 502 KAEGLVPPLAAYEAIVRKCVQVGDVRYKLAVEEL 535
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y+ ++ A + EA FE ++++G++PN + L++ A + +
Sbjct: 118 GVKPDITTYSYILEACAQGGHQLEAKAAFEDMLAMGLQPNRRLFHLMLQA-MRYFETGQM 176
Query: 161 LSVIDEMVNAGFAPSKET 178
+ID M G P+++T
Sbjct: 177 WDLIDTMRQYGIEPNEQT 194
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P YK++ N+ +D A+ E + G T D+ + N +I A L
Sbjct: 374 PIYKAIGG---------NVDAIDEAWVHLETLKQE-GNTVDVTALNVVIQASIALGDLQR 423
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A ++ SLGV PN +++LL+ + + ++ ++ EM A P T +++
Sbjct: 424 AIGCYKASASLGVAPNVDTFNLLLAGCIATQHRQLGDRLLSEMKEAAVKPDVRTYERLIV 483
Query: 185 RCVREMDEE 193
C+ + + E
Sbjct: 484 LCLTQANYE 492
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F+ + S G+ PD+++Y LI +F K+ +A F+ + S+G P+ ++Y+
Sbjct: 471 VEKAFLLFQEM-KSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYT 529
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A+L + A + MV+AG AP+ T
Sbjct: 530 ALLHAYLKTKQVPQASDIFHRMVDAGCAPNTIT 562
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL 60
+ R + +F+ A+ + M + F P TS Y V+ C E ++ +++++
Sbjct: 425 NFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV 484
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
Y I+ + +++A F+ + S G +P + +Y AL++A+ K K
Sbjct: 485 GVIPDVYTYTILIDSF----CKVGLIEQARSWFDEM-ESVGCSPSVVTYTALLHAYLKTK 539
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+ +AS +F +V G PN ++YS LVD + + A V +M+
Sbjct: 540 QVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIG 588
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA-----VGSSFGLTPDIHS 108
YF+ E+ P N V G A I L +A++ +A V SS G P+
Sbjct: 598 YFEGEHTDSIAP--------NVVTYG-ALIDGLCKAHKVVDAQELLDVMSSNGCEPNHII 648
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y+ALI F K+ K A VF + G P +Y+ L+DA +R A+ V+ +M+
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708
Query: 169 NAGFAPSKET 178
+ P+ T
Sbjct: 709 ESSCTPNVVT 718
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + LD A + F + S G P +H+Y +LI A K ++ A +V ++
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRM-SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLES 710
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
PN ++Y+ ++D + + AL ++ M G P+ T
Sbjct: 711 SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVT 753
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TP++ +Y A+I ++ + +A ++ + G PN ++Y+ L+D + +L
Sbjct: 713 TPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQ 772
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCV 187
+ +M+ G AP+ T + + C
Sbjct: 773 LFTQMITQGCAPNYVTYRVLINHCC 797
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +Y L+ F K K+ R+ +++ G PN ++ LV ++ RD A +
Sbjct: 307 PNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKL 366
Query: 164 IDEMVNAGFAPS 175
++ M G P
Sbjct: 367 LNRMAGCGCPPG 378
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 36/161 (22%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ ++V + G+ PD+++Y+ LI K K +A+
Sbjct: 176 SVVSXNTLMNGYIRLGDLDEGFR-LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEX 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTN---------------------------------- 154
F+ ++ G+ PN ++++ L+D H N
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 155 -RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
D K A +ID+M G P K T + C +E D +S
Sbjct: 295 KGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDS 335
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + S N L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANEXFDEMLVKGLVPNGVT 249
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIBGCCKEGDLDSAFEHRKRMIQENIRLDDV-VYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+KP+ +Y+++++ D ++ EM G APS
Sbjct: 382 RLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPS 421
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ P + +YN +I K EA +F
Sbjct: 606 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLF 664
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ G P+ +Y++L+ AHL + D ++ +I+E+ GF+ T+K V
Sbjct: 665 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMV------- 717
Query: 190 MDEESNDRVEALAK 203
+D S+D+ +K
Sbjct: 718 IDMLSDDKANYFSK 731
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G+T +I +YN LI F + + +++ ++
Sbjct: 367 IIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 425
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ PN +++S+L+D+ + + A + EM++ G AP T
Sbjct: 426 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 468
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ +L ++ ++ N +I G +D + F + S G+ D +YN LI
Sbjct: 487 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQG 545
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
F +L K A +F+ +VS V PN ++Y +L+D N + + AL + +++
Sbjct: 546 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 21 SIIDMEEIFSPF--TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVIL 78
++ID +FS T Y LV+A + Q+E A Y INC
Sbjct: 185 TVIDFSRLFSAIAKTKQYDLVLALCK-----------QMELKGIAHNLYTLSIMINC-FC 232
Query: 79 GCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
C + F A+G G P+ +++ LI + EA + + +V +G
Sbjct: 233 RCRKL------CLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 286
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
KP+ ++ + LV+ + + A+ +ID+MV G P+ T V
Sbjct: 287 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPV 332
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ SYN +I + AS VF +++ +KPN ++YS+L+D + D + A
Sbjct: 499 GMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKA 558
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
L + D+M++ AP+ T +
Sbjct: 559 LDLFDQMLSLNIAPTDFTFNTI 580
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK---------SVAAIN 74
D E+ F + L +A + F T+ + ++ +S A K S N
Sbjct: 554 DSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYN 613
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
++ G ++D A + + FG++P++ +Y +LI F K + A + + +
Sbjct: 614 SIVDGFIKEGNIDSALAVYREM-CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMRE 672
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G++ + +YS L+D RD ++A + E++ G +P++
Sbjct: 673 KGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 714
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
+++ RKG + S F + L+R P +V + +I G D ++A F+ +
Sbjct: 510 MILGHCRKGNMDMASSVFS-DMLARDLKP--NVVTYSILIDGNFKKGDSEKALDLFDQM- 565
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S + P ++N +I K+ + EA ++ + G P+ M+Y+ +VD + +
Sbjct: 566 LSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNI 625
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+AL+V EM G +P+ T
Sbjct: 626 DSALAVYREMCEFGVSPNVVT 646
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D + + ++ A K + EA F GVK +A +YS+++ A +
Sbjct: 255 GIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLG 314
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
L +++EM G+ PS+ T V CV + + VEAL K
Sbjct: 315 LELLEEMKERGWVPSEATFTSVIVACVAQ-----GNMVEALRLK 353
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGC--ANIWDLDRAYQTF- 93
L+ C G E +Y Q++ PP SV +N ++ G A +W+ A + F
Sbjct: 406 LIEGCCNSGNIEKASELYTQMK--LNGIPP--SVFNVNSLLRGYLKAPLWE--EASKLFD 459
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
EAV +I +YN ++ K K EA + +++V+ G+ PN +SY+ ++ H
Sbjct: 460 EAVDCGVA---NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 516
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ A SV +M+ P+ T
Sbjct: 517 KGNMDMASSVFSDMLARDLKPNVVT 541
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D+ +Y+ALI F K + A +F L+ +G+ PN + Y+ ++ + +AA
Sbjct: 674 GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAA 733
Query: 161 LSVIDEMVN 169
L +M+N
Sbjct: 734 LVWYKKMIN 742
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R+ E+ ++F+L L P + V N +I G ++ +++ A ++ + +
Sbjct: 690 CKRRDMESAQDLFFEL--LEVGLSPNRIV--YNSMISGFRDLNNMEAALVWYKKMIND-R 744
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAA 160
+ D+ +Y LI K + AS ++ ++S G+ P+ +++ +LV+ L N+ Q + A
Sbjct: 745 IPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNG-LCNKGQLENA 803
Query: 161 LSVIDEMVNAGFAPS 175
+++EM PS
Sbjct: 804 RKILEEMDRKNMTPS 818
>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
aristata]
Length = 382
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+I +YNALI K + A R+F L G+ PN ++Y+ L+D + + AA
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 838
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D+M+ G +PS T
Sbjct: 839 FKLKDKMIEEGISPSVVT 856
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P ++ N +I G ++DRA + F + GL P++ +YN LI +
Sbjct: 774 EMLRRGLVP--NIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGYC 830
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
K+ A ++ + ++ G+ P+ ++YS L++ + D + ++ ++++M+ AG
Sbjct: 831 KIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ + ++ AF K K EA+ + + +LGV+PN ++Y L++ +++ D +AA
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280
Query: 161 LSVIDEMVNAGFAPSKET----LKKVRRRCVREMDE 192
V+ M G + + T +K ++C +MDE
Sbjct: 281 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQC--KMDE 314
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
VA G+ TL F++EN A +K + A
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILA--------------------------- 500
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G T ++N +I K+ K EA +F+ + LG P+ ++Y L+D + +
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 560
Query: 160 ALSVIDEMVNAGFAPSKE 177
A V M +PS E
Sbjct: 561 AFKVKGAMEREPISPSIE 578
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 6/174 (3%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLS 61
L +++L + E A G E+ S Y L++ C + + + V ++ +
Sbjct: 267 LINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA 326
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P ++ + I G +D A + + + GL ++ N+LI + K +
Sbjct: 327 ALVPDERAYGVL---IDGYCRTGKIDDAVRLLDEM-LRLGLKTNLFICNSLINGYCKRGE 382
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA V +V +KP++ SY+ L+D + A ++ D+M+ G P+
Sbjct: 383 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 436
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IIDMEEIFSPFTSLYPLVVACSRKG--FETLDSVYFQLENLSRA---------EPPYKSV 70
+++ EEIF L CS G + TL Y + N+ +A EP S+
Sbjct: 523 MVEAEEIFDKMKDL-----GCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSI 577
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASR 127
N +I G L +G GLTP+I +Y ALI + G L K F S
Sbjct: 578 EMYNSLISGLFKSRRLVEVTDLLTEMGIR-GLTPNIVTYGALIDGWCKEGMLDKAF--SS 634
Query: 128 VFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
FE + G+ N + S +V + R +A L ++ +MV+ GF P E K
Sbjct: 635 YFE-MTENGLSANIIICSTMVSGLYRLGRIDEANL-LMQKMVDHGFFPDHECFLK 687
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + F + S G PD +Y LI+ + EA R+ + ++
Sbjct: 718 NIAIAGLCKTGKVDDARRFFSML-SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN ++Y+ L++ + + A + ++ G P+ T
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 821
>gi|225678075|gb|EEH16359.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 1547
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A ++ + + D R F+A +G ++ N LI+ + K F+A
Sbjct: 539 SEEAYRIALMAFSRLGDFRRVDNLFKAYVKHYGNPKSLYFVNPLIHVNAAVGKVFQAREQ 598
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E L + + P+ S+++L+ AH +RD+ AL + EM++ GF P TL
Sbjct: 599 LESLPNRFSLSPDITSWNILLTAHAKSRDKPGALKTLQEMMDRGFKPDSHTL 650
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
KS+ +N +I A + + +A + E++ + F L+PDI S+N L+ A K + A +
Sbjct: 574 KSLYFVNPLIHVNAAVGKVFQAREQLESLPNRFSLSPDITSWNILLTAHAKSRDKPGALK 633
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
+ ++ G KP++ + +L+
Sbjct: 634 TLQEMMDRGFKPDSHTLGILM 654
>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
[Xeroaloysia ovatifolia]
Length = 431
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 5 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 61
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 62 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
+ L+ ++ N+ ALSV EM
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEM 143
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEK 240
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 241 ANNLIQEMQNRGIEPNSIT 259
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 5 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 61
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 62 RS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKF 120
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 121 LEALSVFSEM 130
>gi|413953911|gb|AFW86560.1| hypothetical protein ZEAMMB73_703962 [Zea mays]
Length = 287
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E P + Y V+ C D E ++ P S A NC + D
Sbjct: 91 ERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCP--SPATYNCFLKEYRGRKD 148
Query: 86 LDRAYQTFEAVGSSFGLT-PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ A + + + + LT PDIH+YN L+ F KL + ++ + V P+ SY
Sbjct: 149 VTAALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSY 208
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDE 192
+LL+ ++ + A EM+ GF P K T + + RR R +DE
Sbjct: 209 TLLIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDE 268
Query: 193 ES 194
E+
Sbjct: 269 EA 270
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N + C DL A +G P+ SYN +I + + +A VF+
Sbjct: 166 AWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDE 225
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN ++Y+ ++D H+ D +A + D+MV G P+ T
Sbjct: 226 MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAIT 272
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY +++ AF K K EA + + + V PNA Y+ ++DA++ + A
Sbjct: 475 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 534
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALA 202
++++M + G +PS T ++ C + E+ + + +L+
Sbjct: 535 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLS 577
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G+ + + V + G+KPN +SY +V+A N A
Sbjct: 440 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 499
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M + P+ + +
Sbjct: 500 VAILDDMFHKDVLPNAQVYNAI 521
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +L+ A+ TF + S + PD +YNALI K ++ A + +
Sbjct: 379 NTLINGYCQTGELEGAFSTFGQMKSRH-IKPDHITYNALINGLCKAERITNAQDLLMEMQ 437
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV P +++ L+DA+ + V+ EM G P+
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 479
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
Y +V+A + D+V E RA P N +I G DL+ ++ +
Sbjct: 203 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNH--ITYNTMIDGHIKGGDLEAGFRLRDQ 260
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ GL P+ +YN L+ + + E S + + + S + P+ +YS+L D N
Sbjct: 261 M-VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNG 319
Query: 156 DQKAALSVIDEMVNAG 171
D KA LS+ + + G
Sbjct: 320 DSKAMLSLFGKYLKNG 335
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K +A+ +
Sbjct: 165 SVVSYNTLMNGYIRLGDLDEGFRLKSAMRAS-GVQPDVYTYSVLINGLCKESXMDDANEL 223
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLP 269
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ + + GV+P+ +Y
Sbjct: 146 DIRVAPLVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTY 204
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 205 SVLINGLCKESXMDDANELFDEMLVKGLVPNXVT 238
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 312 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSXDAEKMLREMLSV 370
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+KP+ +Y+++++ D ++ EM G P
Sbjct: 371 GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVP 409
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PDJ +YN L+Y K +A + + + G+KP+ +Y+ L+D D AA
Sbjct: 267 LLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAF 326
Query: 162 SVIDEMVN 169
M+
Sbjct: 327 EHRKRMIQ 334
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ SYN +I + AS VF +++ +KPN ++YS+L+D + D + A
Sbjct: 459 GMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKA 518
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
L + D+M++ AP+ T +
Sbjct: 519 LDLFDQMLSLNIAPTDFTFNTI 540
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK---------SVAAIN 74
D E+ F + L +A + F T+ + ++ +S A K S N
Sbjct: 514 DSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYN 573
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
++ G ++D A + + FG++P++ +Y +LI F K + A + + +
Sbjct: 574 SIVDGFIKEGNIDSALAVYREM-CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMRE 632
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
G++ + +YS L+D RD ++A + E++ G +P++
Sbjct: 633 KGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 674
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
+++ RKG + S F + L+R P +V + +I G D ++A F+ +
Sbjct: 470 MILGHCRKGNMDMASSVFS-DMLARDLKP--NVVTYSILIDGNFKKGDSEKALDLFDQM- 525
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S + P ++N +I K+ + EA ++ + G P+ M+Y+ +VD + +
Sbjct: 526 LSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNI 585
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+AL+V EM G +P+ T
Sbjct: 586 DSALAVYREMCEFGVSPNVVT 606
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D + + ++ A K + EA F GVK +A +YS+++ A +
Sbjct: 215 GIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLG 274
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
L +++EM G+ PS+ T V CV + + VEAL K
Sbjct: 275 LELLEEMKERGWVPSEATFTSVIVACVAQ-----GNMVEALRLK 313
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGC--ANIWDLDRAYQTF- 93
L+ C G E +Y Q++ PP SV +N ++ G A +W+ A + F
Sbjct: 366 LIEGCCNSGNIEKASELYTQMK--LNGIPP--SVFNVNSLLRGYLKAPLWE--EASKLFD 419
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
EAV +I +YN ++ K K EA + +++V+ G+ PN +SY+ ++ H
Sbjct: 420 EAVDCGVA---NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 476
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ A SV +M+ P+ T
Sbjct: 477 KGNMDMASSVFSDMLARDLKPNVVT 501
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D+ +Y+ALI F K + A +F L+ +G+ PN + Y+ ++ + +AA
Sbjct: 634 GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAA 693
Query: 161 LSVIDEMVN 169
L +M+N
Sbjct: 694 LVWYKKMIN 702
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R+ E+ ++F+L L P + V N +I G ++ +++ A ++ + +
Sbjct: 650 CKRRDMESAQDLFFEL--LEVGLSPNRIV--YNSMISGFRDLNNMEAALVWYKKMIND-R 704
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAA 160
+ D+ +Y LI K + AS ++ ++S G+ P+ +++ +LV+ L N+ Q + A
Sbjct: 705 IPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNG-LCNKGQLENA 763
Query: 161 LSVIDEMVNAGFAPS 175
+++EM PS
Sbjct: 764 RKILEEMDRKNMTPS 778
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 19/185 (10%)
Query: 45 KGFE----TLDSVYFQLENLSRAEPPYKSVAAI---------NCVILGCANIWDLDRAYQ 91
KGF+ T + + + N RA + + I N +I GC+N DL+ A+
Sbjct: 290 KGFQPDLQTYNPILSWMCNEGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFA 349
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + G+ P ++YN LI+ K A + + G+ ++++Y+++++ +
Sbjct: 350 YRDEMVKQ-GMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGY 408
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRVEALAKKFD 206
+ D K A ++ DEM+ G P++ T + RR RE DE V K
Sbjct: 409 CQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDL 468
Query: 207 IRMNT 211
+ MNT
Sbjct: 469 VMMNT 473
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 13/192 (6%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD ++AF +E T D I + FT + V C R D ++ ++ +
Sbjct: 412 GDAKKAFALHDEMMT---DGIKPTQ-----FTYTSLIYVLCRRNKTREADELFEKV--VG 461
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P + +N ++ G ++DRA+ + + + PD +YN L+ K
Sbjct: 462 KGMKP--DLVMMNTLMDGHCATGNMDRAFSLLKEM-DRMNIDPDDVTYNCLMRGLCGEGK 518
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
EA + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+ T
Sbjct: 519 FEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNA 578
Query: 182 VRRRCVREMDEE 193
+ + + D E
Sbjct: 579 LLKGLSKNQDGE 590
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G D +A+ + + + G+ P +Y +LIY + KT EA +FE +V
Sbjct: 402 NIVINGYCQHGDAKKAFALHDEMMTD-GIKPTQFTYTSLIYVLCRRNKTREADELFEKVV 460
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP------------------- 174
G+KP+ + + L+D H + A S++ EM P
Sbjct: 461 GKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFE 520
Query: 175 -SKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
++E + +++RR ++ N + +KK D +
Sbjct: 521 EARELMGEMKRRGIKPDHISYNTLISGYSKKGDTK 555
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ G + A + + G+ PD SYN LI + K T A V + ++
Sbjct: 507 NCLMRGLCGEGKFEEARELMGEMKRR-GIKPDHISYNTLISGYSKKGDTKHAFIVRDEML 565
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
SLG P ++Y+ L+ N+D + A ++ EM + G P+ + V
Sbjct: 566 SLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSV 614
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +YN ++ + AS V + +G+ P+++SY++L+ N D +
Sbjct: 289 SKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLE 345
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEMV G P+
Sbjct: 346 TAFAYRDEMVKQGMVPT 362
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+++++N +I K K +A + S G+KP ++Y+ LV + + A +I
Sbjct: 225 NVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMII 284
Query: 165 DEMVNAGFAPSKET 178
EM + GF P +T
Sbjct: 285 SEMKSKGFQPDLQT 298
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
D + F+ FG+ P++ + N L+ A K A RV E + ++G PN ++Y+
Sbjct: 221 FDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYT 280
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET--------LKKVR-RRCVREMDEESND 196
++ +++ D A V E+++ G+ P T KK R V+ MDE +
Sbjct: 281 TILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEEN 340
Query: 197 RVE 199
RVE
Sbjct: 341 RVE 343
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+W+ + + FE G P +YNALI + + EA+R+++++V G PN
Sbjct: 430 GKVWEARKLFDEFEK-----GSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPN 484
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A +Y++L+ + + + V++EM++ G P+K T
Sbjct: 485 AFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKAT 522
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL-VSLGVKPNAMSYSLL 147
A +TF + SFGL P + S+N L+ + K+ +F++ G+ PN + ++L
Sbjct: 189 AIRTFLRI-PSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNIL 247
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V A D AA+ V++EM GF P+
Sbjct: 248 VKALCKKNDIDAAIRVLEEMPAMGFIPN 275
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y L+ + K + +A +V + + V+PN ++Y ++++A+ +
Sbjct: 306 GWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEV 365
Query: 161 LSVIDEMVNAGFAPS 175
L+++D+M+ + PS
Sbjct: 366 LNLLDDMLEKKYIPS 380
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
D V+ +N + +V N ++ D+D A + E + + G P++ +Y
Sbjct: 221 FDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEM-PAMGFIPNVVTY 279
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
++ + A RVF ++ G P+ +Y++L+D + A+ V+DEM
Sbjct: 280 TTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEM 337
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKGFETLDSVYFQLEN 59
+G L++ N F+ + II P Y ++++ R G S F++
Sbjct: 380 LGKLKQVSFISNLFDKMKTNGII-------PDVFTYNIMISSYGRVGLVDKASELFEVME 432
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
S +P V N +I DLD A+ F+ + G PD+ +Y+ LI FGK
Sbjct: 433 ASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQEK-GYDPDVFTYSILIECFGKS 488
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K A +F+ ++S G PN ++Y++L+D + A + + M G P T
Sbjct: 489 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548
Query: 180 KKVRR 184
+ R
Sbjct: 549 SILER 553
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C++ ++ + +Q +E + G DI +YN L+ A K +A +VFE +
Sbjct: 133 CIVQAHLRSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ 191
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
P+A +Y++L+ LS DEMV+ G
Sbjct: 192 KHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ D+ YN + A GKLK+ S +F+ + + G+ P+ +Y++++ ++
Sbjct: 365 GIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N + C DL A +G P+ SYN +I + + +A VF+
Sbjct: 29 AWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDE 88
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ V PN ++Y+ ++D H+ D +A + D+MV G P+ T
Sbjct: 89 MTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAIT 135
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY +++ AF K K EA + + + V PNA Y+ ++DA++ + A
Sbjct: 338 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 397
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALA 202
++++M + G +PS T ++ C + E+ + + +L+
Sbjct: 398 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLS 440
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G+ + + V + G+KPN +SY +V+A N A
Sbjct: 303 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++++D+M + P+ + +
Sbjct: 363 VAILDDMFHKDVLPNAQVYNAI 384
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +L+ A+ TF + S + PD +YNALI K ++ A + +
Sbjct: 242 NTLINGYCQTGELEGAFSTFGQMKSRH-IKPDHITYNALINGLCKAERITNAQDLLMEMQ 300
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV P +++ L+DA+ + V+ EM G P+
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 342
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
Y +V+A + D+V E RA P + N +I G DL+ ++ +
Sbjct: 66 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLP--NHITYNTMIDGHIKGGDLEAGFRLRDQ 123
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ GL P+ +YN L+ + + E S + + + S + P+ +YS+L D N
Sbjct: 124 M-VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNG 182
Query: 156 DQKAALSVIDEMVNAG 171
D KA LS+ + + G
Sbjct: 183 DSKAMLSLFGKYLKNG 198
>gi|302780829|ref|XP_002972189.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
gi|300160488|gb|EFJ27106.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
Length = 529
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + ++ G N +D A + E + +S +PD+++Y +L+ +F K+K+ EA RV
Sbjct: 18 IVTFSTLVEGYCNAGLVDDAERLLEEIIAS-DCSPDVYTYTSLVDSFCKVKRMVEAHRVL 76
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV--NAGFAPSKETLKKV 182
+ + G +PN ++Y+ L+DA A +++EMV N P+ + L V
Sbjct: 77 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGINNDVQPNVQELASV 131
>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 870
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%)
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
E P S N ++ CA + A FE + G+ PD +YN +I A G+ +
Sbjct: 244 ESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVK 303
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183
EA+ + G+ P+ +++ L+ A + ++ AL++ E+V+ G P+ E K
Sbjct: 304 EATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCI 363
Query: 184 RRC 186
C
Sbjct: 364 VSC 366
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 26 EEIFSPFTSLYPLVVACS------RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79
E+ F P Y ++ C R+ LD + + R +P N +
Sbjct: 454 EDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLE----GRVQP---DAHCFNAAVRA 506
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C+ + + A + + GL PD ++YN+LIYA+G + +A + E + + G K
Sbjct: 507 CSKVGEWAEAERLVTGMRGQ-GLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKV 565
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVN-AGFAPSKETLKKVRRRCVR 188
N M+YS + A + AL ++D MV G P+ CVR
Sbjct: 566 NCMAYSAAIKACDKAFQWERALELLDRMVERGGVKPNLFAYNHAMSACVR 615
Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TP+ + YN++ A + ++ EA+ +F + + G +PNA++Y+ L+ Q A
Sbjct: 175 GITPNPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYAPLIGVMDRCNKQDMA 234
Query: 161 LSVIDEMV 168
+V+ EM+
Sbjct: 235 GAVLKEML 242
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
++ C+++G+ ++ LE + +A+ V NC++ +++ + Y E V
Sbjct: 641 MISMCAKRGW--IERAVKLLEEIRKAQLKPDGVT-YNCLM----SMYGREGMYYKAEEVM 693
Query: 98 SSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
S G P++ +YN L+Y++ K + +A+RVF +V+ V+P+ +++ LV ++ +
Sbjct: 694 SEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSL 753
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKKV 182
K ALSVI+ M G P++ T K +
Sbjct: 754 GLYKEALSVIEYMTEHGCQPTQITFKAL 781
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR F+ + ++PD ++YN +I A + EA R+F+ + G PN ++Y+
Sbjct: 266 DRIQSLFQEM-KDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNA 324
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+D + K A ++ EM AG +P+
Sbjct: 325 LLDVYGKGGMHKEASELLVEMEAAGISPN 353
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
++ + S++ ++++L + Y N +I C A + F+ + + G P+
Sbjct: 265 WDRIQSLFQEMKDLEISPDDY----TYNTMITACIQNSHCQEALRLFQEMKEA-GCCPNR 319
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+YNAL+ +GK EAS + + + G+ PN ++Y+ L+ A+ A ++
Sbjct: 320 VTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKS 379
Query: 167 MVNAGFAPSKET 178
+++ G P + T
Sbjct: 380 LLSKGLCPDEFT 391
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+I +YN LI A+ + EA+ + + L+S G+ P+ +Y L+ A + A
Sbjct: 349 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 408
Query: 161 LSVIDEMVNAGFAPS 175
L EM P+
Sbjct: 409 LETFTEMRKTNCTPN 423
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TPD+ ++N+L+ +FG E S VF + G P ++++L++ + ++
Sbjct: 456 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVD 515
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ ++ G P+ T + RE + ++V
Sbjct: 516 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKV 551
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+LG N L A + FE++ + D+++Y +LI + ++ E +FE + G
Sbjct: 186 VLG--NHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREG 243
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAAL-SVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ NA++Y++++D + D + S+ EM + +P T + C++
Sbjct: 244 QRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQ 296
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
fucata]
Length = 382
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + GV PN SY
Sbjct: 2 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFSEM 83
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G D+++A + + G+ P I YNALI F K A +F ++
Sbjct: 669 LISGFCKAADMEKAVGLLDEMAKK-GIEPGISCYNALIDGFCKSDDISHARNIFNSIICK 727
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D + D + A+ + +EM+ G AP
Sbjct: 728 GLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAP 766
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINC---VILGCANIWDLDRAYQTFEAVG-----S 98
+ TL Y ++ +L A+ + + C V+ I L RA EA G
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME 305
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+GL PD +Y A+I K + +A + + + G+ PN + YS L+D + +
Sbjct: 306 DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD 365
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRR 184
A ++ EM AG P+K T + R
Sbjct: 366 EAFKIVKEMSAAGVQPNKITYDNLIR 391
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ + + S+ G+ P+ +Y+ LI KL + ASR+ + + +G + M+Y+L
Sbjct: 365 DEAFKIVKEM-SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNL 423
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++ HL +++ A +++EM G +P+ T
Sbjct: 424 VIEGHLRQHNKEEAFLLLNEMRKGGISPNVYT 455
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD++ YN+LI + K EA ++ ++ G +PN +Y L+ + + + A
Sbjct: 519 LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578
Query: 162 SVIDEMVNAGFAPS 175
++ +M+N+G P+
Sbjct: 579 QLLHQMLNSGLNPN 592
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G D+ A F ++ GL P+ +Y LI + K +A +
Sbjct: 697 GISCYNALIDGFCKSDDISHARNIFNSIICK-GLPPNCVTYTTLIDGYCKAGDIRDAIDL 755
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ +++ GV P+A YS+L + D + AL + +EM+ G+A V C R
Sbjct: 756 YNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKR 815
Query: 189 EMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221
+E+ + + K DI + +NI+ L
Sbjct: 816 GKLQETVKFLHVMMDK-DIVPSLLTVENIVIGL 847
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++++Y+ +I ++ ++ AS + E +++ G+KPNA Y+ L+ + A
Sbjct: 448 GISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLA 507
Query: 161 LSVIDEMVNAGFAP 174
+ +M P
Sbjct: 508 CETLKKMTRENLTP 521
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD Y +LI F K +A + + + G++P Y+ L+D + D A
Sbjct: 658 GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHA 717
Query: 161 LSVIDEMVNAGFAPSKET 178
++ + ++ G P+ T
Sbjct: 718 RNIFNSIICKGLPPNCVT 735
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKGFETLDSVYFQLEN 59
+G L++ N F+ + II P Y ++++ R G S F++
Sbjct: 380 LGKLKQVSFISNLFDKMKTNGII-------PDVFTYNIMISSYGRVGLVDKASELFEVME 432
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
S +P V N +I DLD A+ F+ + G PD+ +Y+ LI FGK
Sbjct: 433 ASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQEK-GYDPDVFTYSILIECFGKS 488
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K A +F+ ++S G PN ++Y++L+D + A + + M G P T
Sbjct: 489 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548
Query: 180 KKVRR 184
+ R
Sbjct: 549 SILER 553
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C++ ++ + +Q +E + G DI +YN L+ A K +A +VFE +
Sbjct: 133 CIVQAHLRSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ 191
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
P+A +Y++L+ LS DEMV+ G
Sbjct: 192 KHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ D+ YN + A GKLK+ S +F+ + + G+ P+ +Y++++ ++
Sbjct: 365 GIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415
>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
micromera]
Length = 434
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKXCDYSKAISIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ + N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 184 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 243
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 244 ANNLIQEMQSRGIEPNSIT 262
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYXKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS+ EM
Sbjct: 118 STLLTMYVENKKFLEALSIFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+DS + +E + ++ Y ++ + +I G L A + FE + S + PD +Y
Sbjct: 259 IDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTY 318
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
NALI F K A ++ E + G PN +YS L++ + A V DEM +
Sbjct: 319 NALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKS 378
Query: 170 AGFAP 174
G P
Sbjct: 379 LGLKP 383
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +DRA + E + + G P++ +Y+AL+ F K + EA VF+ +
Sbjct: 319 NALINGFCHGXKVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 377
Query: 134 SLGVKPNAMSYSLLVD 149
SLG+KP+ + Y+ L++
Sbjct: 378 SLGLKPDTVGYTTLIN 393
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V F+ S+ EP ++ N +I G ++ + F + S G+ PD+ +YN +
Sbjct: 487 VVFEYLQRSKMEP---TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTM 542
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F + EA +F+ + G PN+ Y+ L+ A L + D++A+ +I EM + GF
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Query: 173 APSKETLKKV 182
A T+ V
Sbjct: 603 AGDASTIGLV 612
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q FE + S PD+ +YN LI F K K+ E VF + G+ N ++Y+
Sbjct: 377 LDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L+ D A + EMV+ G P+ T
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S PP ++ N ++ G L++A FE + S + P I++YN +I
Sbjct: 456 EMVSDGVPP--NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 512
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K + +F +L GVKP+ ++Y+ ++ ++ A ++ EM G P+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 178 TLKKVRRRCVREMDEESN 195
+ R +R+ D E++
Sbjct: 573 CYNTLIRARLRDGDREAS 590
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ EP V N +I G +D A F+ + + G+ P++ +Y++LI
Sbjct: 250 GKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYG 305
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ +ASR+ ++ + P+ ++S L+DA + A + DEMV PS T
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYS 365
Query: 181 K-VRRRCVREMDEESNDRVEALAKK 204
+ C+ + +E+ E + K
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSK 390
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V N +I G ++ + F + S GL + +YN LI + A
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ +VS GV PN M+Y+ L+D N + A+ V + + + P+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ + S+ Q++NL Y INC L A + G P+I
Sbjct: 97 FDVVISLGEQMQNLGIPHNHYTYSILINCF----CRRSQLPLALAVLGKM-MKLGYEPNI 151
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+ ++L+ + K+ EA + + + G +PN ++++ L+ + A+++ID
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 211
Query: 167 MVNAGFAP 174
MV G P
Sbjct: 212 MVAKGCQP 219
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P+ S+ + ++ A + D E + + G+ + ++Y+ LI F + + A
Sbjct: 77 PFPSIIEFSKLLSAIAKMNKFDVVISLGEQM-QNLGIPHNHYTYSILINCFCRRSQLPLA 135
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V ++ LG +PN ++ S L++ + ++ A++++D+M G+ P+ T
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I ++ L+ A K+ K + E + +LG+ N +YS+L++ AL+V
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 164 IDEMVNAGFAPSKETL 179
+ +M+ G+ P+ TL
Sbjct: 139 LGKMMKLGYEPNIVTL 154
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +++ALI AF K K EA ++++ +V + P+ ++YS L++ + A
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 162 SVIDEMVNAGFAP 174
+ + MV+ P
Sbjct: 382 QMFEFMVSKHCFP 394
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ P + +YN +I K EA +F
Sbjct: 508 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G P+ +Y++L+ AHL + D ++ +I+E+ GF+ T+K V
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMV 619
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ +L ++ ++ N +I G +D + F + S G+ D +YN LI
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQG 447
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
F +L K A +F+ +VS V PN ++Y +L+D N + + AL + +++
Sbjct: 448 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G+T +I +YN LI F + + +++ ++
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ PN +++S+L+D+ + + A + EM++ G AP T
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 21 SIIDMEEIFSPF--TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVIL 78
++ID +FS T Y LV+A + Q+E A Y INC
Sbjct: 87 TVIDFSRLFSAIAKTKQYDLVLALCK-----------QMELKGIAHNLYTLSIMINC--- 132
Query: 79 GCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+ F A+G G P+ +++ LI + EA + + +V +G
Sbjct: 133 ----FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
KP+ ++ + LV+ + + A+ +ID+MV G P+ T
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++++ + +I F + +K A ++ LG +PN +++S L++ A
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 161 LSVIDEMVNAGFAPSKETL 179
L ++D MV G P T+
Sbjct: 178 LELVDRMVEMGHKPDLITI 196
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C R + + +++ +R +P VA C+++G N +DR E + + G
Sbjct: 410 CKRGKMDMAMECFEEMQE-ARCQP---DVATYTCLLVGYGNAKRMDRVTAVLEEM-TQKG 464
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAA 160
PD +YNALI K +A+R+++ ++ G+ P +Y++++ ++ L +R+
Sbjct: 465 CPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNYAMG 524
Query: 161 LSVIDEMVNAGFAP 174
+V +EM G P
Sbjct: 525 CAVWEEMHRRGICP 538
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + NC+++ AN A Q F+ + + +PD+ SY AL+ A+ + EA RV
Sbjct: 294 GVESFNCLLVALANEGLGREARQVFDKMLGQY--SPDLRSYTALMLAWCNARNLVEAGRV 351
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ G+KP+ + ++ +++ L + Q A+ + + M G P+ T
Sbjct: 352 WNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWT 401
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L +A+ P +V +I +D A + FE + + PD+ +Y L+ +G
Sbjct: 389 LMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEAR-CQPDVATYTCLLVGYGNA 447
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK-AALSVIDEMVNAGFAPSKET 178
K+ + V E + G P+A +Y+ L+ LTNR A + +M+ G P+ T
Sbjct: 448 KRMDRVTAVLEEMTQKGCPPDARTYNALIKL-LTNRKMPDDAARIYKKMIKKGLDPTIHT 506
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +N +I + ++ EA ++FE + + G PN +Y++L+ H A
Sbjct: 359 GMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM A P T
Sbjct: 419 MECFEEMQEARCQPDVAT 436
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 25 MEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
ME SP Y LVV C + + N + A+ + N +I G
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL----NDAIAKGCIPDIFTFNTLIDGYCK 473
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
++D+A + + + S G+TPD+ +YN L+ K +K F+ ++ G PN +
Sbjct: 474 QRNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNII 532
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+Y++L+++ +R A+ + EM G P TL
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +D A + E++ S GLTPD+ SYN LI F K K EA +V
Sbjct: 255 NIFIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECYLHKMV 313
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GV+PN +Y+ +++ + A ++ + + GF P + T
Sbjct: 314 NSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++N I + EA+R+ E +VS G+ P+ +SY+ L+ + A
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +MVN+G P++ T
Sbjct: 306 ECYLHKMVNSGVEPNEFT 323
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 20 DSIID-----MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAIN 74
D+++D +E+ +P Y +++ K + +++ E +R P + +
Sbjct: 513 DNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP--DIVTLC 570
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I G + +LD+AY+ F + + + +N +I AF + A ++F +
Sbjct: 571 TLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGG 630
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
P+ +Y +++D++ + A + + E ++ G PS T KV
Sbjct: 631 SDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKV 678
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
AY F+ + G+ PDI ++N LI+ K E+ ++F ++ GV PN ++++ +
Sbjct: 200 AYHLFDEMLKQ-GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
A +++ +V+ G P
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTP 284
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ + EP +S AI +++ + Y + +G + PD++++ +
Sbjct: 99 FERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG----IYPDVYTHTIRMK 154
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F + A R+ ++ G + NA+SY ++ Q A + DEM+ G P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214
Query: 175 SKETLKKV 182
T K+
Sbjct: 215 DILTFNKL 222
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN +I F K A ++ + G P+ +YS L++ + D A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375
Query: 161 LSVIDEMVNAGFAPS 175
++V E + GF S
Sbjct: 376 MAVFYEAMEKGFKHS 390
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+T V ++ R + N +I G ++ A+ F+ +G
Sbjct: 128 CKVREFDTAKKVLVEM----RERGCGLNTVTYNVLIAGLCRSGAVEEAF-GFKKDMEDYG 182
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD +Y ALI K +++ EA + + + +KPN + Y+ L+D + + A
Sbjct: 183 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 242
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEES 194
+I EMV AG P+K T VR C + +MD S
Sbjct: 243 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD++ YN+LI+ K+ + E+++ F + G+ PN +YS L+ +L N D ++A +
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 454
Query: 164 IDEMVNAGFAPS 175
+ M++ G P+
Sbjct: 455 VQRMLDTGLKPN 466
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ + + ++ G+ P+ +Y+ L+ K+ + AS + + +V +P+ ++Y+L
Sbjct: 239 DEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 297
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
+++ H + ++K A ++ EM NAG +P+ T + C E+++D +E + K
Sbjct: 298 IIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 356
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G D ++A+ + + S G+ P+I YNALI K A VF +++
Sbjct: 543 LISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 601
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D D A + +EM+ G P
Sbjct: 602 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 640
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++++Y+ +I+ + + +AS + E + + G+KPNA Y+ L+ + + A
Sbjct: 322 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 381
Query: 161 LSVIDEMVNAGFAP 174
+ D+M P
Sbjct: 382 CEIFDKMTKVNVLP 395
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G+++ AF L+E E S+ D+ S + L A K F LD E
Sbjct: 516 GNMEAAFRVLSEIEK--NGSVPDVHVYSSLISGLCK--TADREKAFGILD------EMSK 565
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P ++ N +I G D+ A F ++ + GL P+ +Y +LI K+
Sbjct: 566 KGVDP--NIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGD 622
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
A ++ +++ G+ P+A YS+L + D + A+ +I+EM G A
Sbjct: 623 ISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA 674
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+H Y++LI K +A + + + GV PN + Y+ L+D + D A
Sbjct: 532 GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYA 591
Query: 161 LSVIDEMVNAGFAPS 175
+V + ++ G P+
Sbjct: 592 RNVFNSILAKGLVPN 606
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YN +I + +A R+ + + G+ PN +YS+++ + + + A +
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349
Query: 164 IDEMVNAGFAPS 175
++EM G P+
Sbjct: 350 LEEMTTKGLKPN 361
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + + ++ + + F + GL P+ +Y+ LI+ + K A ++ + ++
Sbjct: 401 NSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
G+KPN + Y L++++ + D + S M++ G
Sbjct: 460 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 497
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L PP S+ +I C+ + A F + + GL PD+ +YN L+Y +GK
Sbjct: 502 LKSGNPP--SLITYTLLIGACSKFGSISDAESVFRIMKTE-GLHPDVVTYNNLMYGYGKT 558
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + + + S G+ P+ +Y++L+ + + A +I E++ GF PS
Sbjct: 559 HQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPS 614
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D+A+Q F A+ S G P + +Y LI A K +A VF + +
Sbjct: 481 MIDGYCTLGRTDKAFQFFGALLKS-GNPPSLITYTLLIGACSKFGSISDAESVFRIMKTE 539
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEES 194
G+ P+ ++Y+ L+ + +IDEM +AG +P T + VR +E+
Sbjct: 540 GLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEA 599
Query: 195 NDRVEALAKK 204
N+ + L ++
Sbjct: 600 NEIISELIRR 609
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ + +AL++ + + ++ +A +F+ L+ G+KP+ + Y+ L+ + + D + A +
Sbjct: 648 PDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACEL 707
Query: 164 IDEMVNAGFAPSKET 178
I MV G P++ T
Sbjct: 708 IGLMVQRGMLPNEST 722
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ ACS+ G +SV+ + + E + V N ++ G L++ ++ + +
Sbjct: 516 LIGACSKFGSISDAESVF----RIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEM 571
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
S+ G++PD+ +YN LI++ EA+ + L+ G P+A++++
Sbjct: 572 RSA-GISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFT 619
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF L P+I Y++ + AS +F+ + LG+ P+ Y+ ++D + T
Sbjct: 433 SFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTD 492
Query: 159 AALSVIDEMVNAGFAPS 175
A ++ +G PS
Sbjct: 493 KAFQFFGALLKSGNPPS 509
>gi|125563762|gb|EAZ09142.1| hypothetical protein OsI_31412 [Oryza sativa Indica Group]
Length = 962
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 52 SVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVGSSFGL 102
+ Y Q + AE KS V A N VI G + D+ +A + F+ + S+ GL
Sbjct: 375 NAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSA-GL 433
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PD +Y ++I FG+ K +A + L + G KPNA ++ +++ + D + A
Sbjct: 434 APDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATE 493
Query: 163 VIDEMVNAG 171
++++M AG
Sbjct: 494 ILEDMRAAG 502
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ +YN +I +GK+ +A VF+ L S G+ P+ +Y +++ K A
Sbjct: 397 GIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQA 456
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
+ ++ N+GF P+ + R D E
Sbjct: 457 ILYYRKLRNSGFKPNASNFYTMINLLARHDDSEG 490
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ ++ + A+ + K EA V + LV G+ N ++Y+ ++ + D + A+
Sbjct: 363 VVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAM 422
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
V D + +AG AP + T + +
Sbjct: 423 EVFDRLKSAGLAPDETTYRSM 443
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR---AYQT 92
Y ++A K + +YF ++ + A P S+ A NC++ L+ Q
Sbjct: 789 YNTIIAAHAKNGDFRSMIYF-VQRMQEAGFPV-SLEAYNCMLDAYGKAGQLEEFAAVLQK 846
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
E G F D ++YN +I +G+ + V L S G +P+ SY+ L+ A+
Sbjct: 847 MERAGCEF----DHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYG 902
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
+ A+ ++ EM G A + T
Sbjct: 903 IAGMPEDAVKLMQEMRIKGIAADRVT 928
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+T V ++ R + N +I G ++ A+ F+ +G
Sbjct: 255 CKVREFDTAKKVLVEM----RERGCGLNTVTYNVLIAGLCRSGAVEEAF-GFKKDMEDYG 309
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD +Y ALI K +++ EA + + + +KPN + Y+ L+D + + A
Sbjct: 310 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 369
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEES 194
+I EMV AG P+K T VR C + +MD S
Sbjct: 370 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 404
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD++ YN+LI+ K+ + E+++ F + G+ PN +YS L+ +L N D ++A +
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 581
Query: 164 IDEMVNAGFAPS 175
+ M++ G P+
Sbjct: 582 VQRMLDTGLKPN 593
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ + + ++ G+ P+ +Y+ L+ K+ + AS + + +V +P+ ++Y+L
Sbjct: 366 DEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 424
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
+++ H + +K A ++ EM NAG +P+ T + C E+++D +E + K
Sbjct: 425 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 483
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G D ++A+ + + S G+ P+I YNALI K A VF +++
Sbjct: 670 LISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 728
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D D A + +EM+ G P
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 767
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++++Y+ +I+ + + +AS + E + + G+KPNA Y+ L+ + + A
Sbjct: 449 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 508
Query: 161 LSVIDEMVNAGFAP 174
+ D+M P
Sbjct: 509 CEIFDKMTKVNVLP 522
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+++ A++ + + G PD+H Y++LI K +A + + + GV PN + Y
Sbjct: 644 NMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 702
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D + D A +V + ++ G P+ T
Sbjct: 703 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 736
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G D+ A F ++ + GL P+ +Y +LI K+ A +
Sbjct: 698 NIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDISNAFYL 756
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ +++ G+ P+A YS+L + D + A+ +I+EM G A
Sbjct: 757 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA 801
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YN +I + +A R+ + + G+ PN +YS+++ + + + A +
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476
Query: 164 IDEMVNAGFAPS 175
++EM G P+
Sbjct: 477 LEEMTTKGLKPN 488
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + + ++ + + F + GL P+ +Y+ LI+ + K A ++ + ++
Sbjct: 528 NSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 586
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
G+KPN + Y L++++ + D + S M++ G
Sbjct: 587 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 624
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 50 LDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+D YF E + + PP V N +I G +D+A + + G+ PD +
Sbjct: 216 VDKAYFLFHEMMGQGLPP--DVVTYNSLIDGLCKAQAMDKAVAILQHMFDK-GVMPDTRT 272
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + L + EA R+ + + G++P+ ++YSLL+ + A SV D MV
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332
Query: 169 NAGFAPS 175
G P+
Sbjct: 333 RKGQKPN 339
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+V + N VI G ++D+AY F E +G GL PD+ +YN+LI K + +A
Sbjct: 199 NVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQ--GLPPDVVTYNSLIDGLCKAQAMDKAVA 256
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +H+ GV P+ +Y++++ + + + A+ ++ +M +G P
Sbjct: 257 ILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 303
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ L+ A + + + S GL PD+ +Y+ LI + K+ + EA VF+ +V
Sbjct: 274 NIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G KPN+ Y +L+ + T ++D M+ G
Sbjct: 333 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGI 371
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N +I A +D+A F + + GL PD+ SY+ +I+ K + +A F
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQN-GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQ 435
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+VS G+ PN +S++ L+ + + K + EM+N G P
Sbjct: 436 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 478
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P Y V+ K D+VY + +S P ++ + +I G +I + +
Sbjct: 408 PDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSP--NIISFTSLIHGLCSIGEWKKVE 465
Query: 91 Q-TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ FE + G+ PD N ++ K + EA F+ ++ +GVKP+ +SY+ L+D
Sbjct: 466 ELAFEMINR--GIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLID 523
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ +D MV+ G P T
Sbjct: 524 GYCFVGKMDESIKQLDRMVSIGLRPDSWT 552
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VKPNAMSYSLLVDAHLTNRD 156
G TPD+ SYNALI KK+ EA + H+ + G PN +SY+ ++D +
Sbjct: 156 LGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGE 215
Query: 157 QKAALSVIDEMVNAGFAP 174
A + EM+ G P
Sbjct: 216 VDKAYFLFHEMMGQGLPP 233
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PD+ SYN LI + + K E+ + + +VS+G++P++ +Y+ L++ + N +
Sbjct: 509 IGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVED 568
Query: 160 ALSVIDEM 167
AL++ EM
Sbjct: 569 ALALYREM 576
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +P++ SYN +I F K + +A +F ++ G+ P+ ++Y+ L+D +
Sbjct: 192 GGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAM 251
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A++++ M + G P T
Sbjct: 252 DKAVAILQHMFDKGVMPDTRT 272
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N V+ G +D A + FE + S F L D+ +++ +I A K+ + EA +F +
Sbjct: 624 NTVLGGLCENSCVDEALRMFEDLRSKEFEL--DVRTFSIVINALLKVGRIDEAKSLFSAM 681
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
V G P+ ++YSL++ +H+ + + ++ M G A L + RR + + D
Sbjct: 682 VLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGD 740
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+VA N +I G + DL+ A F+ + S G P++ +Y LI F K K A +
Sbjct: 213 NVAVYNALIDGYCSTGDLELAIDIFKGMQSK-GCLPNVRTYTQLICGFCKSGKVERAMVL 271
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-LKKVRRRCV 187
+ ++ G+ PN ++Y+ L+ + + A ++ M G AP++ T L + C
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCK 331
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
EE+ + +L +K I++N
Sbjct: 332 HGRIEEAQQFLGSLVQK-GIKVN 353
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD H Y++LI + K EA + ++ GV+ NA+ +++L+D HL +
Sbjct: 384 GFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSP 443
Query: 161 LSVIDEMVNAGFAP 174
+ D M AG P
Sbjct: 444 KMISDRMAAAGVKP 457
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD H Y+ +++ + EA + + G PN Y+ L+D + + D + A
Sbjct: 174 GCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELA 233
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + M + G P+ T ++
Sbjct: 234 IDIFKGMQSKGCLPNVRTYTQL 255
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+A+G F P++ YNALI + A +F+ + S G PN +Y+ L+
Sbjct: 204 DAMGKGF--VPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCK 261
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ + A+ + M+ AG AP+ T
Sbjct: 262 SGKVERAMVLYSRMIEAGLAPNVVT 286
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y I ++ + + +A + ++ GV+PN +Y+ L+ + A
Sbjct: 454 GVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQA 513
Query: 161 LSVIDEMVNAGFAPSKET 178
S + M++ G P+ E+
Sbjct: 514 FSSLKNMIDNGCKPNDES 531
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A++ ++ + GL P+ + LI A K + EA + LV G+K N + Y+
Sbjct: 300 LEHAFRLLHSM-EACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYT 358
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++DA + A +++ +++ GF P
Sbjct: 359 SMIDALCKSGKFDGAHNLMQKIITEGFVP 387
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y++LI K+ +A +F++++ LG++P+ +Y+ L+D H + ++A
Sbjct: 465 GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524
Query: 161 LSVIDEMVNAGFAP 174
LS+ D+MV AG P
Sbjct: 525 LSLHDKMVKAGVLP 538
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YNA++ A T A R F+ ++S GV PN +Y++LV A +K A
Sbjct: 151 GYVPSVLAYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
LS++ +M AG P+ T + R + + +R+ + ++ ++ N
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPN 259
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ ++N+++ K K +A +VF+ +V G+ P+ +SY+ LV + A
Sbjct: 255 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEA 314
Query: 161 LSVIDEMVNAGFAP 174
LSV EM G P
Sbjct: 315 LSVFAEMTQKGIMP 328
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + YNALI + + + EA + + + G+KP+ ++YS ++ A+ N D +A
Sbjct: 396 IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAF 455
Query: 162 SVIDEMVNAGFAPSKETLKKVRR 184
+ +M+ G P T + R
Sbjct: 456 ELNQQMLEKGVLPDAITYSSLIR 478
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN L+ AF + + A R+ + G+KPN ++++ +V+ + A
Sbjct: 220 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDA 279
Query: 161 LSVIDEMVNAGFAP 174
V DEMV G AP
Sbjct: 280 RKVFDEMVREGLAP 293
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV A N V+L ++ L A + F+++ S G+ P++++YN L+ A EA +
Sbjct: 155 SVLAYNAVLLALSD-ASLTSARRFFDSMLSD-GVAPNVYTYNILVRALCGRGHRKEALSI 212
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G PN ++Y+ LV A + A ++ M G P+ T
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVT 262
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G ++ A + F+ + GL PD SYN L+ + K + EA VF +
Sbjct: 264 NSMVNGMCKAGKMEDARKVFDEMVRE-GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMT 322
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G+ P+ ++++ L+ + + A++++ +M G
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G DLD + + +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 157 SVVSYNTLMNGYIRXGDLDEGFXLKSXMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 215
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G+ PN ++++ L+D H N A+ + +M++ +P
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + + E + +++ GV+P+ +Y
Sbjct: 138 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTY 196
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 197 SVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + + D +Y ALI + ++ +A ++ ++S+
Sbjct: 304 LINGCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSV 362
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+A +Y+++++ D ++ EM G PS T
Sbjct: 363 GLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVT 405
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Query: 37 PLVVACSR--KGFETLDSV---YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P V+ C++ KGF TL +V +E L + P V A N +I G + +D A +
Sbjct: 118 PDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQP--DVFAYNALINGFCKMNRIDDATR 175
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + S +PD +YN +I + K A +V + L+S +P ++Y++L++A
Sbjct: 176 VLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEAT 234
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ AL ++DEM++ G P T + R +E
Sbjct: 235 MLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE 272
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ K K +A +F L +G PN+ SY+
Sbjct: 380 LDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 438
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ A ++ D+ AL +I EMV+ G P + T + RE
Sbjct: 439 TMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCRE 482
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LSR P + N +I G +DRA++ + G PD+ SYN L+ A
Sbjct: 249 EMLSRGLKP--DMFTYNTIIRGMCKEGMVDRAFEMIRNLELK-GCEPDVISYNILLRALL 305
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K E ++ + S PN ++YS+L+ + + A++++ M G P
Sbjct: 306 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 362
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD +SY+ LI AF + + A E ++S G P+ ++Y+ ++ N A
Sbjct: 359 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
L + ++ G +P+ +
Sbjct: 419 LEIFGKLGEVGCSPNSSS 436
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N V+ + LD+ ++ + +G GLTPD+H+YN L++ GK K A +
Sbjct: 284 VLTYNVVMRAKYMLGKLDQFHRLLDEMGRD-GLTPDLHTYNLLLHVLGKGDKPLAALNLL 342
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ +G PN + ++ L+D + +A DEM+ G P
Sbjct: 343 NYMSDVGCVPNVLHFTNLIDGLGRAGNLEACKYFFDEMIKKGCDP 387
>gi|115479233|ref|NP_001063210.1| Os09g0423300 [Oryza sativa Japonica Group]
gi|50725891|dbj|BAD33419.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|50726131|dbj|BAD33652.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113631443|dbj|BAF25124.1| Os09g0423300 [Oryza sativa Japonica Group]
gi|125605742|gb|EAZ44778.1| hypothetical protein OsJ_29409 [Oryza sativa Japonica Group]
Length = 962
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 52 SVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVGSSFGL 102
+ Y Q + AE KS V A N VI G + D+ +A + F+ + S+ GL
Sbjct: 375 NAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSA-GL 433
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PD +Y ++I FG+ K +A + L + G KPNA ++ +++ + D + A
Sbjct: 434 APDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATE 493
Query: 163 VIDEMVNAG 171
++++M AG
Sbjct: 494 ILEDMRAAG 502
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ +YN +I +GK+ +A VF+ L S G+ P+ +Y +++ K A
Sbjct: 397 GIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQA 456
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
+ ++ N+GF P+ + R D E
Sbjct: 457 ILYYRKLRNSGFKPNASNFYTMINLLARHDDSEG 490
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ ++ + A+ + K EA V + LV G+ N ++Y+ ++ + D + A+
Sbjct: 363 VVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAM 422
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
V D + +AG AP + T + +
Sbjct: 423 EVFDRLKSAGLAPDETTYRSM 443
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR---AYQT 92
Y ++A K + +YF ++ + A P S+ A NC++ L+ Q
Sbjct: 789 YNTIIAAHAKNGDFRSMIYF-VQRMQEAGFPV-SLEAYNCMLDAYGKAGQLEEFAAVLQK 846
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
E G F D ++YN +I +G+ + V L S G +P+ SY+ L+ A+
Sbjct: 847 MERAGCEF----DHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYG 902
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
+ A+ ++ EM G A + T
Sbjct: 903 IAGMPEDAVKLMQEMRIKGIAADRVT 928
>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
alba]
Length = 419
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 21 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAIAIFSRLK 77
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 78 RS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKF 136
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 137 LEALSVFSEM 146
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+DRA++ + +TPD +YN L+ L + EA + E + G++P+ +SY
Sbjct: 374 DMDRAFEIMGEMEKKR-ITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSY 432
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEAL 201
+ L+ + D K A+ V DEM+ GF P+ T ++ C+ ++ D V+ +
Sbjct: 433 NTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEM 490
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N VI G + + + G+ PD ++Y +I + K+ K +A
Sbjct: 143 PSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDA 202
Query: 126 SRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
++VF+ +++ G V+PNA+ Y+ L+ + + + AL EMV+ G +
Sbjct: 203 TKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVS 251
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFEA-VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I G +A + FE VG G+ + +Y +LI+A E R+F
Sbjct: 293 NILINGYCKEGKEKKAMKMFEVMVGK--GIRATVVTYTSLIHALSMKGMVQETDRLFNDA 350
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVREMD 191
V G++P+ Y+ L+++H T D A ++ EM P T + R C+
Sbjct: 351 VRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRL 410
Query: 192 EESNDRVEALAKK 204
+E+ +E + K+
Sbjct: 411 DEARGLIEEMTKR 423
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + LD A E + + G+ PD+ SYN LI + +A +V + ++
Sbjct: 398 NTLMRGLCLLGRLDEARGLIEEM-TKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMM 456
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P ++Y+ ++ N A ++ EMV G P T
Sbjct: 457 GKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDST 501
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C E V+ ++ + EP + N +I G + +L+ A + + G
Sbjct: 194 CKVGKVEDATKVFDEMLTEGKVEP---NAVMYNALIGGYCDQGNLEVALR-YRGEMVDRG 249
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++ + +YN ++ + EA + E + G+ P+A +Y++L++ + +K A+
Sbjct: 250 VSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAM 309
Query: 162 SVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRV 198
+ + MV G + T + + V+E D ND V
Sbjct: 310 KMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAV 351
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY LI F KL +AS +F+ +V G+ N + Y++L+ + + + A
Sbjct: 625 GIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKA 684
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEM GF P+ T
Sbjct: 685 KELLDEMSGKGFPPNAVT 702
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
LG A + ++D A + +++ S GL P SYN LI K K+ +A + + S+G+
Sbjct: 254 LGTATL-NVDEALELKKSM-SCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGL 311
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ ++YS+L+D L R+ AA ++ EMV+ GF+
Sbjct: 312 FADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFS 347
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
RKG+E L +++ + PY A+ G + DLD AY + +G+S G
Sbjct: 402 RKGYELL----VEIKKRNIVISPYTYGTAVK----GMCSSGDLDGAYNIVKEMGAS-GCR 452
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y LI F + + +A RV + + G+ P+ Y+ L+ + A S
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSF 512
Query: 164 IDEMVNAGFAP 174
+ EMV GF P
Sbjct: 513 LLEMVENGFKP 523
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V + +I G + + ++ +A F+ + + GLT ++ YN L+ F + +
Sbjct: 622 RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQA-GLTSNVIIYNMLLGGFCRSGE 680
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A + + + G PNA++Y ++D + + D A + DEM G P
Sbjct: 681 IEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTT 740
Query: 182 VRRRCVREMDEE 193
+ C R D E
Sbjct: 741 LVDGCCRLNDVE 752
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD YN+LI K KK EA +V G KP+A +Y + ++ + +A
Sbjct: 485 GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASA 544
Query: 161 LSVIDEMVNAGFAPSK 176
+ EM+ G P+K
Sbjct: 545 DKYVKEMLECGVIPNK 560
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D +Y L+ K K +A +F + G+ P+ SY L+D + + A
Sbjct: 590 GILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKA 649
Query: 161 LSVIDEMVNAGF 172
S+ DEMV AG
Sbjct: 650 SSIFDEMVQAGL 661
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 40/66 (60%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P + +Y +L+ + K+ + E VF+ +++ G++P+ + YS++++A L AL
Sbjct: 839 LMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKAL 898
Query: 162 SVIDEM 167
++D+M
Sbjct: 899 VLLDQM 904
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLKKTFEA-SRVFEHLVS 134
GC + D++RA FE + G +NALI + FGK + T + +R+ +
Sbjct: 744 GCCRLNDVERAITIFET--NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFD 801
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KPN ++Y++++D + +AA + M A P+
Sbjct: 802 KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPT 842
>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 426
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I FGK K EA + + + GV PN +SY
Sbjct: 59 DYSKAISIFSRLKRS-GITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFIEALSVFAEM 140
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + + A
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 239
Query: 162 SVIDEMVNAGFAPSKET 178
++I EM N G P+ T
Sbjct: 240 NLIQEMQNRGIEPNTIT 256
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V F+ S+ EP ++ N +I G ++ + F + S G+ PD+ +YN +
Sbjct: 487 VVFEYLQRSKMEP---TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTM 542
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F + EA +F+ + G PN+ Y+ L+ A L + D++A+ +I EM + GF
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Query: 173 APSKETLKKV 182
A T+ V
Sbjct: 603 AGDASTIGLV 612
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q FE + S PD+ SY+ LI F K K+ E +F + G+ N ++Y+
Sbjct: 377 LDEAKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ D A + EMV+ G P+ T
Sbjct: 436 TLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S PP ++ N ++ G L++A FE + S + P I++YN +I
Sbjct: 456 EMVSDGVPP--NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 512
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K + +F +L GVKP+ ++Y+ ++ ++ A ++ EM G P+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 178 TLKKVRRRCVREMDEESN 195
+ R +R+ D E++
Sbjct: 573 CYNTLIRARLRDGDREAS 590
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +D A F+ + + G+ P++ +Y++LI + +ASR+ ++
Sbjct: 262 IIDGLCKNKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
+ P+ ++S L+DA + A + DEMV PS T + C+ + +E+
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380
Query: 195 NDRVEALAKK 204
E + K
Sbjct: 381 KQMFEFMVSK 390
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V + + +I G +D + F + S GL + +Y LI + A
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREM-SQRGLVGNTVTYTTLIQGLFQAGDCDMAQ 451
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ +VS GV PN M+Y+ L+D N + A+ V + + + P+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ + S+ Q++NL Y INC L A + G P+I
Sbjct: 97 FDVVISLGEQMQNLGMPHNHYTYSILINCF----CRRSQLPLALAVLGKM-MKLGYEPNI 151
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+ ++L+ + K+ EA + + + G +PN ++++ L+ + A+++ID
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDR 211
Query: 167 MVNAGFAP 174
MV G P
Sbjct: 212 MVAKGCQP 219
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P+ S+ + ++ A + D E + + G+ + ++Y+ LI F + + A
Sbjct: 77 PFPSIIEFSKLLSAIAKMNKFDVVISLGEQM-QNLGMPHNHYTYSILINCFCRRSQLPLA 135
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V ++ LG +PN ++ S L++ + ++ A++++D+M G+ P+ T
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I ++ L+ A K+ K + E + +LG+ N +YS+L++ AL+V
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 164 IDEMVNAGFAPSKETL 179
+ +M+ G+ P+ TL
Sbjct: 139 LGKMMKLGYEPNIVTL 154
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P V N + L + D +A F +
Sbjct: 22 LITHFGKEGL--FDAALSWLQKMEQDQVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 78
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 79 XS-GFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 137
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 138 LEALSVFSEM 147
>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 511
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G I ++DRA V + PD+ SY +I + KL+K E S +F
Sbjct: 212 VITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLF 271
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +++ G PN +++ L+D D +AL++ +M+ G P T
Sbjct: 272 DEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVAT 320
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 67 YKSVA-AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
YK V +N +I G + ++D A++ + + SFG PD+ +YN LI+ + + A
Sbjct: 173 YKPVTYTVNILIRGLCRVGEIDEAFKLLKDL-RSFGCLPDVITYNTLIHGLCLINEVDRA 231
Query: 126 SRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P+ +SY++++ + R + + DEM+N+G AP+ T
Sbjct: 232 RSLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFT 285
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G + ++ F+ + +S G P+ ++NALI FGKL A ++
Sbjct: 248 VVSYTMIISGYCKLRKMEEGSLLFDEMINS-GTAPNTFTFNALIDGFGKLGDMASALALY 306
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
++ G P+ +++ L++ H R A+ + +M
Sbjct: 307 SKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKM 344
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P YN +I + K EA+++ + KP+ +++++L+ H A+
Sbjct: 384 IVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAI 443
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVRE-MDEESNDRVEALAKKFDI 207
D+M+ G AP + T+ +R ++ M E+ E LA+ +
Sbjct: 444 GFFDKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARVKEVLAQNLTL 490
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ A + F + S G P ++N LI +G KT EA ++ E L GVKPN +Y
Sbjct: 98 NMKEAMKLFRKMKES-GCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTY 156
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
++LV A + + A +++ +MV +G P T + R
Sbjct: 157 NILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLAR 196
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ + N +I G N + A + E + G+ P+ +YN L+ A+ + EA +
Sbjct: 117 TTSTFNTLIKGYGNAGKTEEALKLLEFLQDG-GVKPNQRTYNILVRAWCNKENMEEAWNM 175
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V+ G++P+A++Y+ L A+ + A +I EM+N P++ T
Sbjct: 176 VYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERT 225
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +N++I AF + EA ++F + G KP +++ L+ + + A
Sbjct: 78 GMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEA 137
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRV 198
L +++ + + G P++ T VR C +E EE+ + V
Sbjct: 138 LKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMV 176
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 74 NCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N ++ N +++ A+ ++ V S G+ PD +YN L A+ + +T A + +
Sbjct: 157 NILVRAWCNKENMEEAWNMVYKMVAS--GMQPDAVTYNTLARAYAEKGETIRAEEMILEM 214
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
++ V PN + S++V+ + + A + M G P+ + + + MD
Sbjct: 215 LNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDT 274
Query: 193 ESNDRVEALAKKFDIR 208
E D V L ++ +R
Sbjct: 275 EGVDEVLTLMEENGVR 290
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG-C--ANIWDLDRAYQTFE 94
L A + KG ET+ + LE L+R P + +I ++ G C N+ D R F
Sbjct: 194 LARAYAEKG-ETIRAEEMILEMLNRRVTPNERTCSI--IVNGYCKEGNMVDASR----FV 246
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
G+ P++ +N+LI F T V + GV+P+ +++S +++A +
Sbjct: 247 FRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSA 306
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
+ ++MV A P + + VR + E + + +K+ + N
Sbjct: 307 GRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPN 362
>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
viburnoides]
Length = 337
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 2 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFSEM 83
>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 426
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I FGK + EA + + GV PN +SY
Sbjct: 59 DYSKAISIFSKLKRS-GITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ + ALSV EM
Sbjct: 118 STLLTMYVENKRFREALSVFAEM 140
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----DLDRAYQTFEAVGS-- 98
+ TL ++Y + + A + + I C++ L NI LD A + +
Sbjct: 117 YSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMR 176
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ P++ SYN L+ +G + EA +F + + N ++Y+ ++ + + +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHE 236
Query: 159 AALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 237 KANNLIQEMQNRGIEPNSIT 256
>gi|443917840|gb|ELU38471.1| PPR domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 615
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 15/190 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G ++ A++ L+ FE D F P S LV R ETLD+ + L L
Sbjct: 394 GQIRDAYLALDLFE--------DHRVKFLP-ESASGLVEVIDRSS-ETLDNAWDVLTQLP 443
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R ++ A+N I N+ D+ RA ++ + ++PD +++ L+ +
Sbjct: 444 RP----VNIEAVNTTIEAATNLSDMQRAIGIYKEL-PDLEVSPDAQTFDILLGGCLSISH 498
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
R+++ ++S ++P +YS L+ LT ++A S ++E+ P + +
Sbjct: 499 AELGERLYQDMLSNQIRPTLQTYSRLILLALTQETYESAFSRLEEIKGRNMIPPQRVYEA 558
Query: 182 VRRRCVREMD 191
+ +RCV E D
Sbjct: 559 LVQRCVEEGD 568
>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 691
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
FGL P+ +SY LI A+G+ KK + A+ F + +G+KP + SY+ ++ A+ + +
Sbjct: 418 FGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHE 477
Query: 159 AALSVIDEMVNAGFAPSKET 178
A +V + M+ G PS ET
Sbjct: 478 KAYAVFENMIREGIKPSIET 497
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL P + +YN LI A+ + ++ + + +L ++P++++YS ++ A + RD K
Sbjct: 559 IGLQPTVMTYNMLINAYARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKR 618
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRC-VREMDEESNDRV 198
A EMV +G+ + +K+R V+ D+ +D+V
Sbjct: 619 AFFYHKEMVKSGYVMDISSYRKLRAILDVKVADKNKSDKV 658
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P HSY A+I+A+ +A VFE+++ G+KP+ +Y+ L+DA D +
Sbjct: 455 GIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETL 514
Query: 161 LSVIDEMVN 169
+ + M++
Sbjct: 515 MKIWKLMMS 523
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++ + YN L+ A+ K + EA +F + + G+KP A+++++L+ A+ K
Sbjct: 349 GISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIV 408
Query: 161 LSVIDEMVNAGFAPS 175
S++ EM + G P+
Sbjct: 409 ESLLAEMKDFGLKPN 423
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S + +S P S N +I G A D+ A + +
Sbjct: 701 LLKACCKSG--RMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMK 757
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ E + +LGVKPN +Y+ L+
Sbjct: 758 KE-GVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 816
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ ALS +EM G P K
Sbjct: 817 EKALSCYEEMKAVGLKPDK 835
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 772 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVG 830
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A +++ EMV AG T RC+ ++
Sbjct: 831 LKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW-SRCLCKI 889
Query: 191 DEESNDRVEALAKKF 205
+ + E L K F
Sbjct: 890 EGSGGELTETLQKTF 904
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 480 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDW 536
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 537 ANAFAVFEDMVKEGMKP 553
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++DRA QT + + P ++ +I F K + VF+ +
Sbjct: 559 NNIIAAFCGMGNMDRAIQTVKEM-QKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMR 617
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G P +++ L++ + R + A+ ++DEM AG + ++ T K+
Sbjct: 618 RCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 666
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D +A++ F + + GL DI +Y AL+ A K + A V + + +
Sbjct: 666 IMQGYASVGDTGKAFEYFTRLQNE-GLEVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 724
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD---- 191
+ N+ Y++L+D D A +I +M G P T C + D
Sbjct: 725 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 784
Query: 192 EESNDRVEALAKKFDIRMNT 211
++ + +EAL K +I+ T
Sbjct: 785 TQTIEEMEALGVKPNIKTYT 804
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 7/184 (3%)
Query: 7 AFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAE 64
F+ L ++ A+ ++E P LY ++A C + +++ L R
Sbjct: 529 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKL-RHR 587
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P ++ I I G A D+ R+ + F+ + G P +H++NALI + ++ +
Sbjct: 588 PTTRTFMPI---INGFAKSGDMRRSLEVFDMM-RRCGCVPTVHTFNALINGLVEKRQMEK 643
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A + + + GV N +Y+ ++ + + D A + N G T + + +
Sbjct: 644 AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLK 703
Query: 185 RCVR 188
C +
Sbjct: 704 ACCK 707
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 484 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 542
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 543 FEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 593
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 526 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKL 584
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ +++ + D + +L V D M G P+ T
Sbjct: 585 RHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTF 628
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 288 LDTNGDNWQAVISAFEKINKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 347
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
Y+ L+ A+ RD + ALS + +M G
Sbjct: 348 YTSLIHAYAVGRDMEEALSCVRKMKEEGI 376
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S +S P ++ N +I G A D+ A + +
Sbjct: 664 LLKACCKSG--RMQSALAVTREMSAQNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMK 720
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ + + +LGVKPN +Y+ L+
Sbjct: 721 QE-GVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLP 779
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ AL +EM AG P K
Sbjct: 780 EKALRCFEEMKLAGLKPDK 798
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + SY LI + K+ K +A V + + S G+K N +YS+L++ L +D A
Sbjct: 443 GFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNA 502
Query: 161 LSVIDEMVNAGFAP 174
+V ++++ G P
Sbjct: 503 FTVFEDVIKDGLKP 516
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C D+ RA +T + + + G+ P++ +Y LI+ + +A R FE + G
Sbjct: 735 INACCKAGDMLRATKTIQEM-EALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAG 793
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A LS+ EM+ + T +C+R++
Sbjct: 794 LKPDKAVYHCLMTSLLSRATVAEAYIYSGILSICREMIESELTVDMGT-AVYWSKCLRKI 852
Query: 191 DEESNDRVEALAKKFDIRMNTEN 213
+ + EAL K F N +
Sbjct: 853 EGTGGELTEALQKTFPPDWNAHH 875
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A ++ RA + F+ + S G P +H++NAL+ + ++ +A + + +
Sbjct: 559 IIHGFARAGEMRRALEIFDMMRRS-GCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALA 617
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
GV P+ +Y+ +++ + D A ++ N G T + + + C +
Sbjct: 618 GVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 670
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + C+I + + +A + + + S+ G+ ++ +Y+ LI F KLK A V
Sbjct: 447 SVISYGCLINMYTKMGKVSKALEVSKMMESA-GIKHNMKTYSMLINGFLKLKDWTNAFTV 505
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
FE ++ G+KP+ + Y+ ++ A + A+ ++ EM P+ T +
Sbjct: 506 FEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPI 559
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I + ++DRA + + P ++ +I+ F + + A +F
Sbjct: 518 VVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRH-RPTSRTFMPIIHGFARAGEMRRALEIF 576
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P +++ LV + R + A+ ++DEM AG +P + T
Sbjct: 577 DMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHT 625
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
K E LD + L +S E Y ++ + G A + D +A++ F + + GL
Sbjct: 606 KAVEILDEM--ALAGVSPDEHTYTTI------MNGYAALGDTGKAFEYFTKLRNE-GLEL 656
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +Y AL+ A K + A V + + + N Y++L+D D A ++
Sbjct: 657 DVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLM 716
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMD----EESNDRVEALAKKFDIRMNT 211
+M G P T C + D ++ +EAL K +++ T
Sbjct: 717 QQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYT 767
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD + ++AV S+F P + ++ + + A + FE + G+ P++
Sbjct: 280 LDTQPENWQAVVSAFERIKKPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHV 339
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESN-DRVEA 200
Y+ L+ A+ RD + ALS + +M G S T V + D+ N DR E+
Sbjct: 340 YTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAES 399
Query: 201 LAKKFD 206
L ++ +
Sbjct: 400 LVREME 405
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L Y+ FE + + G++PD YN LI + K + EA+R++E +VS+G++P+ +Y+
Sbjct: 24 LRDGYKLFEQMLDN-GISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYN 82
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L++A K A+ + M GF P
Sbjct: 83 SLLNAFCKETKMKEAMELFKTMAEKGFEP 111
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + + A Q F+++ S G +PD+ +YN L+ A K KT EA ++F+ ++
Sbjct: 188 NTILSGLCRMGKVSEAKQFFDSMPSR-GYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246
Query: 134 SLGVKPNAMSYS--LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G P+ ++Y+ LL A +N D+ A + +MV +G AP+ T
Sbjct: 247 AKGYMPDTVTYNSILLGLARKSNMDE--AEEMFKKMVASGCAPNGAT 291
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ V + G PD +YN+++ + EA +F+ +V+ G PN +YS+
Sbjct: 236 DEAMKLFKDVIAK-GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSI 294
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ H + A V++EM G P
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVP 322
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 30 SPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSR--AEPPYKSVAAINCVILGCANIWD 85
+P + Y +V++ C K +D + LE +S+ A P V N ++ G
Sbjct: 286 APNGATYSIVLSGHCRAK---KVDDAHKVLEEMSKIGAVP---DVVTYNILLDGLCKTNL 339
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A++ F + + G PDI SY+ ++ K K +A +F+ ++ + P+ ++++
Sbjct: 340 VDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFN 398
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+L+D A ++D+M +G AP
Sbjct: 399 ILMDGLCKAGKLDEAKDLLDQMTCSGCAP 427
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G A +D A + +E + S GL P I++YN+L+ AF K K EA +F+ +
Sbjct: 47 NILIDGYAKKGRVDEANRLYEEM-VSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMA 105
Query: 134 SLGVKPNAMSYSLLVDA 150
G +P+ ++YS ++
Sbjct: 106 EKGFEPDVVTYSTIISG 122
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 59 NLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
N+ AE +K + A C V+ G +D A++ E + S G PD+ +Y
Sbjct: 269 NMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM-SKIGAVPDVVTY 327
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N L+ K +A +F +V G P+ +SYS++++ A + D M+
Sbjct: 328 NILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE 387
Query: 170 AGFAP 174
P
Sbjct: 388 RKLVP 392
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 41/73 (56%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P+ +++ ++ +F K K + ++FE ++ G+ P+ + Y++L+D + A
Sbjct: 5 SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64
Query: 163 VIDEMVNAGFAPS 175
+ +EMV+ G PS
Sbjct: 65 LYEEMVSVGLEPS 77
>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
rugosa]
Length = 348
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 2 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFXEM 83
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD +Y ++I+ + K EA ++F ++S G+KP+ ++Y+ L+D + + K A
Sbjct: 388 IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447
Query: 162 SVIDEMVNAGFAPS 175
S+ ++MV G P+
Sbjct: 448 SLHNQMVEKGLTPN 461
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F L N + +V ++ G ++D A + + S GL P++ +YNALI
Sbjct: 447 FSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM-SEKGLQPNVCTYNALIN 505
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K+ +A ++ E + G P+ ++Y+ ++DA+ + A ++ M++ G P
Sbjct: 506 GLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQP 565
Query: 175 S 175
+
Sbjct: 566 T 566
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL PD +Y ALI + K + EA + +V G+ PN ++Y+ LVD +
Sbjct: 420 SKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVD 479
Query: 159 AALSVIDEMVNAGFAPS 175
A ++ EM G P+
Sbjct: 480 IANELLHEMSEKGLQPN 496
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP++ +Y AL+ K + A+ + + G++PN +Y+ L++ + + A
Sbjct: 457 GLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQA 516
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +++EM AGF P T
Sbjct: 517 VKLMEEMDLAGFFPDTIT 534
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 69 SVAAINCVILGCANIWDLDR-AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
SV + N + +N +D R A++ F S G+ + SYN +++ +L K EA
Sbjct: 215 SVDSCNLFLARLSNSFDGIRTAFRVFREY-SEVGVCWNTVSYNIILHLLCQLGKVKEAHS 273
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P+ +SYS++VD + L +++E+ G P++ T
Sbjct: 274 LLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYT 324
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ ++N+L+ + +++ + + GV P+ +Y++L+ H R+ K A
Sbjct: 597 GIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEA 656
Query: 161 LSVIDEMVNAGFA 173
+ EMV GF+
Sbjct: 657 WFLHKEMVEKGFS 669
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++YN LI K + EA + + +V G A SY+ L+ + + A
Sbjct: 632 GVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEA 691
Query: 161 LSVIDEMVNAGFAPSKE 177
+ +EM GF KE
Sbjct: 692 RKLFEEMRTHGFIAEKE 708
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E V F LT SYN+LI F K KK EA ++FE + + G Y + VD +
Sbjct: 662 EMVEKGFSLTA--ASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYE 719
Query: 154 NRDQKAALSVIDEMV 168
+ + L + DE +
Sbjct: 720 EGNWENTLELCDEAI 734
>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 646
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
GC N+ Y + +G+ P++ +YNAL+YA G+ K+ +A ++E +++ G+
Sbjct: 244 GCLNV------YNDLKVLGAK----PNLVTYNALLYAMGRAKRARDAKAIYEEMINNGLT 293
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
PN +Y+ L+ A+ R + AL+V EM G
Sbjct: 294 PNWPTYAALLQAYCRARFNRDALNVYKEMKEKG 326
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
CAN+ A + FE + SS PD +Y +LI + + K E +F ++ G +P
Sbjct: 341 CANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIGKISEMEAMFNEMMESGFEP 400
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
N + + LV + + + + +++++ G +P
Sbjct: 401 NIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISP 435
>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 525
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN++I L + +A +VFE ++ G+ PN ++YS L+ R+ A
Sbjct: 248 GVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKA 307
Query: 161 LSVIDEMVNAGF 172
+ V+DEMVN G
Sbjct: 308 IFVLDEMVNNGL 319
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++N L+ F K K A + +V +GV+P+ ++Y+ ++ H A
Sbjct: 213 GIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDA 272
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V + M++ G P+ T
Sbjct: 273 VKVFELMIHKGLLPNVVT 290
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN+LI+ + EA+ + +++ G+ PN ++++LVD A
Sbjct: 178 GIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRA 237
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+++ MV+ G P T V
Sbjct: 238 KTIMCFMVHVGVEPDVVTYNSV 259
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD+H+ +I LK T V + +GV+P ++++ L++ +
Sbjct: 35 SLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVG 94
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN----DRVEALAKKFDI 207
AA D + + G+ + T + + D +++E + FD+
Sbjct: 95 AAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDL 147
>gi|357486943|ref|XP_003613759.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515094|gb|AES96717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 733
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 59 NLSRAEPPYKSVAAINC-----VILGCANIWDLDR-----AYQTFEAVGSSFGLTPDIHS 108
N+ +A ++ V+ NC V++ W + A F+ G GL + +
Sbjct: 210 NVEKACEVWRMVSRKNCGLNGAVVVSTLTHWLCKKGKVLEARNMFDEFGK--GLVASLLT 267
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI + K EA+R+++ +V GV PNA +Y++L+ R+ K + V++EM+
Sbjct: 268 YNTLIAGLCEGGKLCEAARLWDEMVEKGVAPNAFTYNMLIKGFCKVRNAKEGIRVLEEML 327
Query: 169 NAGFAPSKET 178
P+K T
Sbjct: 328 ENRCFPNKST 337
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 83 IW--DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+W D+D A + F V G +PD+ SY L+ F +L K +A RV + + GV+PN
Sbjct: 115 VWRGDMDGAMKVFREVLDR-GWSPDVTSYTVLVDGFCRLGKLVDAIRVMDVMEENGVEPN 173
Query: 141 AMS 143
S
Sbjct: 174 EKS 176
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN LI F K++ E RV E ++ PN +Y++L+D L + K
Sbjct: 295 GVAPNAFTYNMLIKGFCKVRNAKEGIRVLEEMLENRCFPNKSTYTILIDGILLSGGMKQE 354
Query: 161 LS 162
++
Sbjct: 355 IN 356
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
GL P++ SY ++ F A +VF ++ G P+ SY++LVD
Sbjct: 97 GMGLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDRGWSPDVTSYTVLVDGFCRLGKLV 156
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ V+D M G P++++ + V
Sbjct: 157 DAIRVMDVMEENGVEPNEKSGEAV 180
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 37 PLVVACSR--KGF---ETLDSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P V+ C++ KGF + ++ +E L S EP V A N VI G + ++ A
Sbjct: 101 PDVILCTKLIKGFFNFKNIEKASRVMEILESHTEP---DVFAYNAVISGFCKVNRIEAAT 157
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
Q + + G PDI +YN +I + +K A +V + L+ P ++Y++L++A
Sbjct: 158 QVLNRMKAR-GFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEA 216
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ A+ +++EM+ G P T +R C M E + + + +L K
Sbjct: 217 TIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 271
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+++YNA+I K A+ + L S G KP+ +SY++L+ A L
Sbjct: 237 GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEG 296
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM + G P+K T
Sbjct: 297 EKLVAEMFSRGCEPNKVT 314
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI +YN ++ A K +A +F L +G PN SY+ ++ A + D+
Sbjct: 375 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 434
Query: 159 AALSVIDEMVNAGFAPSKET 178
AL ++ M++ G P + T
Sbjct: 435 RALGMVPAMISKGVDPDEIT 454
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++RA + ++ +S G PD+ SYN L+ AF K E ++ +
Sbjct: 246 NAIIRGMCKEGMVERAAELITSL-TSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMF 304
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S G +PN ++YS+L+ + A+SV+ M+ P
Sbjct: 305 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 345
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N + ++A + F + G P++ SYN +I A A + ++S GV P
Sbjct: 393 CKN-GNANQALEIFNKL-RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDP 450
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKKVRR 184
+ ++Y+ L+ + + A+ ++D+M +GF P+ + L KVRR
Sbjct: 451 DEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 502
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +SY+ LI A K + A + ++++S G P+ ++Y+ ++ A N + AL
Sbjct: 343 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQAL 402
Query: 162 SVIDEMVNAGFAPS 175
+ +++ G P+
Sbjct: 403 EIFNKLRGMGCPPN 416
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V++ N +I + D RA A+ S G+ PD +YN+LI + E
Sbjct: 414 PP--NVSSYNTMISALWSCGDRSRALGMVPAMISK-GVDPDEITYNSLISCLCRDGLVEE 470
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A + + + G +P +SY++++ R A+ + EM+ G P++ T
Sbjct: 471 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETT 524
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD+ LI F K +ASRV E L S +P+ +Y+ ++ +AA
Sbjct: 98 GYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HTEPDVFAYNAVISGFCKVNRIEAA 156
Query: 161 LSVIDEMVNAGFAP 174
V++ M GF P
Sbjct: 157 TQVLNRMKARGFLP 170
>gi|15222950|ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g13800
gi|8778410|gb|AAF79418.1|AC068197_28 F16A14.3 [Arabidopsis thaliana]
gi|332190949|gb|AEE29070.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 883
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
I DL A + F+ + S G+ PD Y ALI K+ EA +F+ ++ GVKP+
Sbjct: 772 CKIGDLGEAKRIFDQMIES-GVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPD 830
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ Y+ L+ N A+ ++ EM+ G P+K +L V
Sbjct: 831 VVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAV 872
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+F + PD+ Y LI K+ EA R+F+ ++ GV P+A Y+ L+ K
Sbjct: 754 AFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLK 813
Query: 159 AALSVIDEMVNAGFAP 174
A + D M+ +G P
Sbjct: 814 EAKMIFDRMIESGVKP 829
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 73 INCVI----LGC-ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
INCVI L C + + AY F+ + ++ D YN A GKL K EA
Sbjct: 359 INCVIVSSILQCYCQMGNFSEAYDLFKEFRET-NISLDRVCYNVAFDALGKLGKVEEAIE 417
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F + G+ P+ ++Y+ L+ A ++ EM G P
Sbjct: 418 LFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTP 464
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + FE + + + PD+ +Y +I + +L + +A +FE + VKP+ ++YS+L
Sbjct: 618 KAREFFEILVTK-KIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVL 676
Query: 148 V--DAHLTNRDQKAALSVIDEMV 168
+ D L + + A VI ++V
Sbjct: 677 LNSDPELDMKREMEAFDVIPDVV 699
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD +AF E+ T + +D++ IF+ L+ AC + G + S + +
Sbjct: 669 VGDTGKAF----EYFTRLQNEGLDVD-IFT----YEALLKACCKSG--RMQSALAVTKEM 717
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S P S N +I G A D+ A + + G+ PDIH+Y + I A K
Sbjct: 718 SARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAG 775
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A++ E + +LGVKPN +Y+ L+ + ALS +EM G P K
Sbjct: 776 DMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDK 831
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 768 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 826
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGF 172
+KP+ Y L+ + L+ A +++ EMV AG
Sbjct: 827 IKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGL 868
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEE---GVKHNLKTYSMMINGFVKLKDW 535
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 536 ANAFAVFEDMVKEGMKP 552
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
R+ E LD + L +S E Y + + G A++ D +A++ F + + GL
Sbjct: 638 RQAVEILDEM--TLAGVSANEHTYTKI------MQGYASVGDTGKAFEYFTRLQNE-GLD 688
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
DI +Y AL+ A K + A V + + + + N+ Y++L+D D A +
Sbjct: 689 VDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADL 748
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMD----EESNDRVEALAKKFDIRMNT 211
I +M G P T C + D ++ + +EAL K +I+ T
Sbjct: 749 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYT 800
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV------RRRCVRE 189
+P ++ ++ + + D + +L V D M G P+ T + +R+ V
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI 643
Query: 190 MDE 192
+DE
Sbjct: 644 LDE 646
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 541
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 542 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 287 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L+ A+ RD ALS + +M G S
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMS 378
>gi|9802759|gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana]
Length = 337
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++ + +
Sbjct: 25 NIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKILDVIK 83
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R E
Sbjct: 84 LYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHE 143
Query: 194 SNDRV 198
+ + V
Sbjct: 144 NCNHV 148
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 32 FTSLYPLVVACSR-----KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
FTS+ ++ R + FE LDS +++ P V A N +I+G ++
Sbjct: 310 FTSMIGVLCKAERVDEAVELFEELDS--------NKSVP---CVYAYNTMIMGYGSVGKF 358
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ AY E G P + +YN ++ G+ K EA R+ E + + PN SY++
Sbjct: 359 NEAYSLLERQKRK-GCIPSVIAYNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNI 416
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDE 192
L+D + +AAL V D M AG P+ T+ + R C + +DE
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDE 464
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+QL + + +V VI G A I LD AY FE S + ++ Y++LI
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-AVDLNVVVYSSLID 699
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
FGK+ + EA + E L+ G+ PN +++ L+DA + + AL M N P
Sbjct: 700 GFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPP 759
Query: 175 SKET-------LKKVRR 184
++ T L KVR+
Sbjct: 760 NEVTYSIMVNGLCKVRK 776
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G + +A+ L E +T + P Y V+ K + LD Y E +
Sbjct: 635 GKVNKAYQLLEEMKT----------KGLQPTVVTYGSVIDGLAK-IDRLDEAYMLFEE-A 682
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+++ +V + +I G + +D AY E + GLTP+ +++N L+ A K ++
Sbjct: 683 KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNTYTWNCLLDALVKAEE 741
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA F+++ +L PN ++YS++V+ R A EM G P+ T
Sbjct: 742 IDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTIT 798
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N VI G +++AYQ E + + GL P + +Y ++I K+ + EA +FE
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTK-GLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 681
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S V N + YS L+D A +++E++ G P+ T
Sbjct: 682 AKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYT 728
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++ FE + + GLTPD+ SY+ LI+ K + + ++F + G+ + +Y
Sbjct: 566 EIEKGRALFEEIKAQ-GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAY 624
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++++D + A +++EM G P+ T V
Sbjct: 625 NIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ ++N+LI F + S++FE ++S GV+P+ +S++ ++ + N +A
Sbjct: 105 LGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEA 164
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRC 186
A +M+ GF P+ T+ V C
Sbjct: 165 AFDAFKQMLGRGFLPTSATISTVLAAC 191
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD ++N LI A G+ +A ++++ ++ G P+ +Y+ L++A D +
Sbjct: 483 SCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWR 542
Query: 159 AALSVIDEMVNAGFAPSKET 178
A SVI +M N GF PS+ +
Sbjct: 543 TAESVIKDMKNKGFKPSETS 562
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YN L+ A+ + E + + + + G+KPNA++Y+ +++A+ ALS+
Sbjct: 348 PDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSL 407
Query: 164 IDEMVNAGFAPS 175
D+M +G AP+
Sbjct: 408 YDQMKESGCAPN 419
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A ++ + S G P++ +YNA++ GK ++ E ++ + G PN ++++
Sbjct: 401 VDKALSLYDQMKES-GCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWN 459
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE---TLKKVRRRCVREMDEE 193
++ K V EM + GF P ++ TL RC ++D E
Sbjct: 460 TMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAE 510
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI C LD A + F + S G P +YNAL+ FGK EA + + +
Sbjct: 286 VISACGREGLLDEAKEFFVGLKSQ-GYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN 344
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+A++Y+ LV A++ + ++ID M G P+ T
Sbjct: 345 NCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVT 387
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DRA++ + GL PD+ +YN+L+ + + + ++A + L + G K + +SY+
Sbjct: 647 DRAHEIMHLI-QECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNT 705
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ AL + EM++ G P
Sbjct: 706 VIKGFCRQGLMHEALRTLSEMISRGIRP 733
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ ++N ++ G RVF+ + S G +P+ +++ L+ A A
Sbjct: 450 GCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDA 509
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ DEM+ AGF PS T + R D + + V
Sbjct: 510 EKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESV 547
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY-QTFEAV 96
++ C KG FQ EP + + C + D ++ Y + EA
Sbjct: 461 MLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEA- 519
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G TP + +YNAL+ A + A V + + + G KP+ SYSL+++++
Sbjct: 520 ----GFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSY 570
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C + ++RA+Q + G PD+ +N+++ F + A + + G++P
Sbjct: 608 CRALAGMERAFQALQ----KHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQP 663
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ ++Y+ L+D + + A ++ E+ N+G
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSG 695
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC+N DL+ A+ + + G+ P ++YN LI+ K A + +
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQ-GMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-----RRRCVR 188
G+ ++++Y++L++ + + D K A ++ DEM+ G P++ T + R+ R
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449
Query: 189 EMDEESNDRVEALAKKFDIRMNT 211
E DE V K + MNT
Sbjct: 450 EADELFEKVVGKGMKPDLVMMNT 472
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD ++AF +E T D I + FT + V C + D ++ ++ +
Sbjct: 411 GDAKKAFALHDEMMT---DGIQPTQ-----FTYTSLIYVLCRKNKTREADELFEKV--VG 460
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P + +N ++ G I ++DRA+ + + + PD +YN L+ K
Sbjct: 461 KGMKP--DLVMMNTLMDGHCAIGNMDRAFSLLKEM-DMMSINPDDVTYNCLMRGLCGEGK 517
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+
Sbjct: 518 FEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D +A+ + + + G+ P +Y +LIY + KT EA +FE +V
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTD-GIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM----VN----------------AGFA 173
G+KP+ + + L+D H + A S++ EM +N F
Sbjct: 460 GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFE 519
Query: 174 PSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
++E + +++RR ++ N + +KK D +
Sbjct: 520 EARELMGEMKRRGIKPDHISYNTLISGYSKKGDTK 554
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ G + A + + G+ PD SYN LI + K T A V + ++
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRR-GIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
SLG P ++Y+ L+ N++ + A ++ EM + G P+ + V
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSV 613
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +YN ++ + AS V + +G+ P+++SY++L+ N D +
Sbjct: 288 SKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLE 344
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEMV G P+
Sbjct: 345 MAFAYRDEMVKQGMVPT 361
>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D + AY+ + + GL PD+ SYN ++ +++K EA+ +FE + G P+ +SY
Sbjct: 308 DSESAYRVLDEMVEK-GLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSY 366
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
++ D + A +++DEM+ G+ P ++ L++
Sbjct: 367 RIVFDGLCEGLQFEEAAAILDEMLFKGYKPRRDRLER 403
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y+ LI + K ++ E SR+ E + G KP+ ++Y++L++ D ++A V+DEMV
Sbjct: 261 YSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMV 320
Query: 169 NAGFAP 174
G P
Sbjct: 321 EKGLKP 326
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD +YN LI F + A RV + +V G+KP+ +SY++++ +
Sbjct: 285 SEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVEKGLKPDVISYNMILGVLFRIQKW 344
Query: 158 KAALSVIDEMVNAGFAP 174
+ A + ++M G +P
Sbjct: 345 EEATYLFEDMPRRGCSP 361
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD +AF E+ T + +D++ IF+ L+ AC + G + S + +
Sbjct: 670 VGDTGKAF----EYFTRLQNEGLDVD-IFT----YEALLKACCKSG--RMQSALAVTKEM 718
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S P S N +I G A D+ A + + G+ PDIH+Y + I A K
Sbjct: 719 SARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAG 776
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A++ E + +LGVKPN +Y+ L+ + ALS +EM G P K
Sbjct: 777 DMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDK 832
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 769 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 827
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A +++ EMV AG T +C+ ++
Sbjct: 828 IKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW-SKCLCKI 886
Query: 191 DEESNDRVEALAKKF 205
+ + E L K F
Sbjct: 887 EASGGELTETLQKTF 901
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 477 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDW 533
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 534 ANAFAVFEDMVKEGMKP 550
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++DRA QT + + P ++ +I+ + K + VF+ +
Sbjct: 556 NNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMR 614
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G P +++ L++ + R + A+ ++DEM AG + ++ T K+
Sbjct: 615 RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 663
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D +A++ F + + GL DI +Y AL+ A K + A V + + +
Sbjct: 663 IMQGYASVGDTGKAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 721
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD---- 191
+ N+ Y++L+D D A +I +M G P T C + D
Sbjct: 722 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 781
Query: 192 EESNDRVEALAKKFDIRMNT 211
++ + +EAL K +I+ T
Sbjct: 782 TQTIEEMEALGVKPNIKTYT 801
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 481 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 539
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 540 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 590
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 523 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 581
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ ++ + + D + +L V D M G P+ T
Sbjct: 582 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTF 625
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 285 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 344
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L+ A+ RD ALS + +M G S
Sbjct: 345 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMS 376
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S + N ++ G + LD ++ A+ +S G+ PD+++Y+ LI K K +A +
Sbjct: 176 SAVSYNTLMNGYIRLGVLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLSKESKMDDADEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ +++K
Sbjct: 295 KGDLKQAHDLIDDMSRK 311
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLSKESKMDDADELFDEMLVKGLVPNGVT 249
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDDV-VYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +Y+++++ D ++ EM G PS T
Sbjct: 382 GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YN LIY K +A + + + G+KP+ ++Y+ L+D D +A
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAF 337
Query: 162 SVIDEMVN 169
M+
Sbjct: 338 EHRKRMIQ 345
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN++++ F + + EA V ++ GV P+ +Y+ +++ ++ + A
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
Query: 161 LSVIDEMVNAGFAP 174
+ DEM+ GF+P
Sbjct: 712 FRIHDEMLQRGFSP 725
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C RK D ++ ++ RA P I +I G + +L A + F+ +
Sbjct: 456 CKRKMLGEADKLFNEMT--ERALFPDSYTLTI--LIDGHCKLGNLQNAMELFQKMKEK-R 510
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ D+ +YN L+ FGK+ A ++ +VS + P +SYS+LV+A + A
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 162 SVIDEMVNAGFAPS 175
V DEM++ P+
Sbjct: 571 RVWDEMISKNIKPT 584
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + D+D A + + + S + P SY+ L+ A EA RV+
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNALCSKGHLAEAFRVW 573
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++S +KP M + ++ + + + S +++M++ GF P
Sbjct: 574 DEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +YN LI A+ EA + + G P +Y+ +++ + + A
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207
V EM+ +G +P T + + ++ D ++V + + D+
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDV 371
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 34 SLYPLVVACSRKGFETLDSVY---------FQLENLSRAEPPYKSVAAINCVILGCANIW 84
+YP +V + TL S Y F+L N + V N VI G
Sbjct: 265 GVYPDIVT-----YNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG 319
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+RA + F + S GL+PD +Y +L+ K E +VF + S V P+ + +
Sbjct: 320 KYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCF 378
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S ++ + + AL + + AG P
Sbjct: 379 SSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 30 SPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
+P + Y ++ KG + D+ F E + + + P +VA ++ + ++D A
Sbjct: 645 APDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKP--TVATYTALVQALCHAGNVDEA 702
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ FE + + L + Y+ALI+ F K K A ++FE ++S G P A++ + L D
Sbjct: 703 FHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFD 762
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ + + A ++ EM G P T +
Sbjct: 763 GLVRSGKTEKAQELLQEMAAGGSPPHAATFTAI 795
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+RA + F + +S G P+ Y +LI+ F K + EA +F+ +V G +P+ ++++
Sbjct: 311 LERAEELFRVMAAS-GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHT 369
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D + + + A +EM+ G P+ T
Sbjct: 370 VMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVT 402
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+ +G I ++DRA + E SS G D+ +Y AL + A +F+ +V
Sbjct: 584 LCIGLCKIGEVDRAVKMLEEA-SSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQ 642
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P+A +Y +++ + + + A DEM+ G P+ T
Sbjct: 643 GGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVAT 685
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 55 FQLENLSRAEPPYKS-VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
F++ R +P + + ++C+ C D ++A++ F + + + PD + A++
Sbjct: 177 FEIMKRKRCKPDLHTFLILVDCL---CKAGMD-EKAFEVFHEMMAMGFVPPDRALHTAMV 232
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
K K+ EA VF + G P+A++Y+ ++D + AL V+D M+
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292
Query: 174 PSKET 178
P++ T
Sbjct: 293 PTEVT 297
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ S+N LI +F + ++ +A FE + KP+ ++ +LVD + A
Sbjct: 149 GIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKA 208
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRR 185
V EM+ GF P L R
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVR 233
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA--ALSVIDEMV 168
++I K + EA R+F+ +VS G KP+A +Y++L++ +R+ + A +++ ++
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570
Query: 169 NAGFAPSKET 178
G+ P T
Sbjct: 571 MVGYLPDAVT 580
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V+ Q+E PP A N +I G A A + + + + P +Y L
Sbjct: 247 VFGQMEKCGF--PP--DAIAYNTMIDGLAKAGHAQEALKVLDNMLAK-ACVPTEVTYGIL 301
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + K A +F + + G +PN++ Y+ L+ + K A S+ DEMV AG+
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361
Query: 173 AP 174
P
Sbjct: 362 RP 363
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + ++A ++FE + G P++ +Y +I K+ + A R+ + +++
Sbjct: 371 MIDGLCKSGNFEQAAKSFEEMMRG-GCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G P++++Y L+D A ++DE+ +P+
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG-K 118
L R P ++ + N +I G L +AY FE + L PD++++N+ ++ +
Sbjct: 456 LDRGCEP--NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR-RLCPDVYTFNSFLHGLCQR 512
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L + +FE +VS G PN SYS+L+D + L + EMV+ G AP
Sbjct: 513 LDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAP 568
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + A VI G LD A+ E + G PD +YN I K ++ +
Sbjct: 36 PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRA-GCEPDYVTYNVFIDGLCKAERVDD 94
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ + + P ++Y+ LVD L A++++++MV G +P+ +T
Sbjct: 95 AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKT 148
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y ++I KL + E F + + G +P+A++Y+ L+D + + A
Sbjct: 319 GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKA 378
Query: 161 LSVIDEMVNAGFAPSKET 178
V +M+ +G S T
Sbjct: 379 HRVYRQMLQSGTVVSTVT 396
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A E + G +P + +Y +I K + EA R+F ++ G +P+A Y+
Sbjct: 127 LDEAMAILEQMVEK-GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYT 185
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
L+ AL +++MV G A E + +R++ N
Sbjct: 186 ALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGN 235
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A G L+PD +Y+ +I GK A ++F ++ G PN ++Y++++
Sbjct: 431 YQRMQAAG----LSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIA 486
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
R+ + AL + +M NAGF P K T
Sbjct: 487 LQAKARNYQNALKLYRDMQNAGFEPDKVT 515
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI+++G+ +A VF + G +P+ ++Y L+D H A
Sbjct: 368 GCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFA 427
Query: 161 LSVIDEMVNAGFAP 174
+ + M AG +P
Sbjct: 428 MEMYQRMQAAGLSP 441
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A++ ++A+ + GL P++ + N+L+ AF ++ + +A + + +++LG+ P+ +Y
Sbjct: 563 NVEKAWEWYQAMLHA-GLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTY 621
Query: 145 SLLV 148
+LL+
Sbjct: 622 TLLL 625
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 37 PLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
PL+ +GF + +D + ++EN E +V N +I G ++ A F
Sbjct: 307 PLITGLLARGFVKKVDDLQLEMEN----EGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVE 362
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ + GL PD+ +YN+L+ + K EA +F L G+ P ++Y++L+D +
Sbjct: 363 M-RAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLG 421
Query: 156 DQKAALSVIDEMVNAGFAP 174
D + A + +EMV G P
Sbjct: 422 DLEEARRLKEEMVEQGCLP 440
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
FQL + E N +I G +L A + + S+ GL PD +Y LI+
Sbjct: 497 FQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISN-GLQPDCITYTCLIH 555
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A + EA + F ++S G+ P+A++Y++++ A+ + +A +M+ G P
Sbjct: 556 AHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 615
Query: 175 SKET 178
++ T
Sbjct: 616 NEIT 619
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
G+ P+ +YN LI+A ++ +T A R F ++ G+ PN +Y+LL+D L
Sbjct: 612 GVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDGKL 663
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +YN LI + +L EA R+ E +V G P+ +Y++L+
Sbjct: 402 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMT 461
Query: 161 LSVIDEMVNAGFAP 174
DEM++ G P
Sbjct: 462 REFFDEMLSKGLRP 475
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA---FGKLKKTFEASRVFEHLVSL 135
G N+ L + F+ + S GL PD +YN I A G + K+F+ V ++
Sbjct: 451 GSHNVCSLAMTREFFDEMLSK-GLRPDCFAYNTRICAEITLGDISKSFQLREV---IMLE 506
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ + ++Y++L+D + K A ++ +M++ G P
Sbjct: 507 GISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQP 545
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + VI G D D+AY T+ + G+ PD+
Sbjct: 176 EALELLHMMADDRGGGSPP--DVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVV 232
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN++I A K + +A V +V GV P+ M+Y+ ++ + ++ K A+ + +M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 168 VNAGFAP 174
+ G P
Sbjct: 293 RSDGVEP 299
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI + K EA ++ +VS+G+KPN ++YS L++ + +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 565 ALVLFKEMESSGVSP 579
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V N +I +D+A + + + G+ PD +YN++++ +
Sbjct: 221 EMLDRGILP--DVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA + + S GV+P+ ++YSLL+D N A + D M G P
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 178 T 178
T
Sbjct: 338 T 338
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++FE +V +GVKPN ++Y+ L++ + A+ ++ MV
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 169 NAGFAPSKET 178
+ G P+ T
Sbjct: 539 SVGLKPNTVT 548
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 91 QTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q EA+G S G+ PD+ +Y+ L+ K + EA ++F+ + G+KP +Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + T ++D MV G P
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD + ++ LI A+ K K +A VF + G+ PNA++Y ++ + + A
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ G +P
Sbjct: 426 MLYFEQMIDEGLSPG 440
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY +I F K + +A + ++ G+ P+ ++Y+ ++ A + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V++ MV G P T +
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSI 272
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY +I KL + EA RV + ++ G +PN ++Y LVD D A
Sbjct: 109 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 168
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ ++ +M G+ P+ T +
Sbjct: 169 VELVRKMTERGYRPNAITYNNI 190
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G LD A + + S G +P+I +YN +I KL + EA + E +V G +
Sbjct: 264 GLCKAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 322
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
PN ++Y++L+DA + A+ +++ MV G+ P+
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN 359
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D + L ++R + + N VI G +DRAY+ F + S GL PD +Y+
Sbjct: 482 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYS 540
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+I + K + EA+ V E ++ G P A++Y L+D + AL ++ +++
Sbjct: 541 IVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 600
Query: 171 GFAP 174
G P
Sbjct: 601 GSYP 604
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + EA+ S G +P++ +Y++L++ K K EA+ + + + G PN ++Y+
Sbjct: 236 VDDACRLVEAMVSK-GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYN 294
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D H A +++EMV+ G P+ T
Sbjct: 295 TIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT 327
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + LD A Q F+ + S PD+ +Y+ ++ + K K +A R+ E +V
Sbjct: 188 NNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMV 247
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S G PN ++YS L+ A +++ M +G +P+
Sbjct: 248 SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 289
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
+ ++L NL + ++ N ++ G D+A + G +PDI +YN +
Sbjct: 448 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 507
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I K K+ A ++F ++S G+ P+ ++YS+++ + R A +V++ M+ GF
Sbjct: 508 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 567
Query: 173 APSKET 178
P T
Sbjct: 568 DPGAIT 573
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
+S+ PP N +I G + LD A + E + + G P++ SYN +++
Sbjct: 31 LHFREMSKTCPP--DSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLH 87
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFA 173
F K + A + E +V G P+ +SY+ +++ L DQ A V+D+M+ G
Sbjct: 88 GFCKANRVENALWLLEQMVMRGCPPDVVSYTTVING-LCKLDQVDEACRVMDKMIQRGCQ 146
Query: 174 PS 175
P+
Sbjct: 147 PN 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD L+ ++R+ ++ N +I G + +D AY E + G P++ +Y
Sbjct: 271 LDEATALLQRMTRSGCS-PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG-GCQPNVVTY 328
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
L+ AF K K +A + E +V G PN +Y+ L+D + + A ++ M+
Sbjct: 329 TVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQ 388
Query: 170 AGFAPS 175
G P+
Sbjct: 389 KGCVPN 394
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 20 DSIIDMEEI----FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINC 75
D+I +EE+ F+P Y V+ K ++++ + + R PP V +
Sbjct: 62 DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPP--DVVSYTT 119
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G + +D A + + + G P++ +Y L+ F ++ A + +
Sbjct: 120 VINGLCKLDQVDEACRVMDKM-IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PNA++Y+ ++ + R +AL + EM +G P
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCP 217
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN L+ F +T +A +FE + G +P+ +Y+ LV HL ++
Sbjct: 636 GLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV-GHLVDKKSYKD 694
Query: 161 L--SVIDEMVNAGFAPSKETLKKV 182
L V MV+ GF + E K+
Sbjct: 695 LLAEVSKSMVDTGFKLNHELSSKL 718
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + VI G D D+AY T+ + G+ PD+
Sbjct: 176 EALELLHMMADDRGGGSPP--DVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVV 232
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN++I A K + +A V +V GV P+ M+Y+ ++ + ++ K A+ + +M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 168 VNAGFAP 174
+ G P
Sbjct: 293 RSDGVEP 299
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI + K EA ++ +VS+G+KPN ++YS L++ + +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 565 ALVLFKEMESSGVSP 579
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V N +I +D+A + + + G+ PD +YN++++ +
Sbjct: 221 EMLDRGILP--DVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA + + S GV+P+ ++YSLL+D N A + D M G P
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 178 T 178
T
Sbjct: 338 T 338
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++FE +V +GVKPN ++Y+ L++ + A+ ++ MV
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 169 NAGFAPSKET 178
+ G P+ T
Sbjct: 539 SVGLKPNTVT 548
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 91 QTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q EA+G S G+ PD+ +Y+ L+ K + EA ++F+ + G+KP +Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + T ++D MV G P
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD + ++ LI A+ K +A VF + G+ PNA++Y ++ + + A
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ G +P
Sbjct: 426 MLYFEQMIDEGLSPG 440
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY +I F K + +A + ++ G+ P+ ++Y+ ++ A + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V++ MV G P T +
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSI 272
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 77 ILGCA--NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
IL CA N +D+A F + GL P+ +Y A+I K + +A FE ++
Sbjct: 376 ILICAYANQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G+ P + Y+ L+ T + A +I EM++ G
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP++ +Y ALI+A+ K KK A+ +FE ++S G PN ++YS L+D H + A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607
Query: 161 LSVIDEMVNAGFAP 174
+ + M + P
Sbjct: 608 CQIFERMCGSKDVP 621
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D AY+ + + G P++ +Y A+I FG + K + E + S
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEK-GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN ++Y +L+D N A ++++EM + +KV
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 855
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N ++ A+ FE + GL D+++Y ++ +F K +A + F + +G PN
Sbjct: 494 CNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L + A + + M++ G P+
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y +I K+ KT EA ++ + + G +PN ++Y+ ++D + L +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ M + G AP+ T + + C +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCK 826
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKGFETLDSVYFQLEN 59
+G L++ N F+ + II ++F+ Y ++++ R G S F++
Sbjct: 438 LGKLKQVSFISNLFDKMKTNGII--PDVFT-----YNIMISSYGRVGLVDKASELFEVME 490
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
S +P V N +I DLD A+ F+ + G PD+ +Y+ LI FGK
Sbjct: 491 ASSCKP---DVVTYNSLINCLGKHGDLDEAHMLFKEMQEK-GYDPDVFTYSILIECFGKS 546
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
K A +F+ ++S G PN ++Y++L+D + A + + M G P T
Sbjct: 547 NKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 606
Query: 180 KKVRR 184
+ R
Sbjct: 607 SILER 611
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C++ ++ + +Q +E + G DI +YN L+ A K +A +VFE +
Sbjct: 191 CIVQAHLRSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ 249
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
P+A +Y++L+ LS DEMV+ G
Sbjct: 250 KHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 286
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ D+ YN + A GKLK+ S +F+ + + G+ P+ +Y++++ ++
Sbjct: 423 GIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 473
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 49/75 (65%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ +Y +L++ + ++ + E +F+ +V+ G+KP+ +++S++VDAHL + AL
Sbjct: 857 VMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKAL 916
Query: 162 SVIDEMVNAGFAPSK 176
++D+M++ G K
Sbjct: 917 KLVDDMLSEGVNVCK 931
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD+ YN +I F K K E +++ G+KPN +Y + + + +AA
Sbjct: 507 GLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAA 566
Query: 161 LSVIDEMVNAGFAPS 175
EM+++G AP+
Sbjct: 567 ERSFIEMLDSGIAPN 581
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G D+D A + ++ + GL PD + Y LI F + K++ E + + + ++
Sbjct: 273 VIAGLCRAGDVDEALELKRSMANK-GLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTM 331
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
G+KP+ ++Y+ L++ + D A V +EM
Sbjct: 332 GLKPDHVAYTALINGFVKQSDIGGAFQVKEEM 363
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +++ LI+ K K EA VF L+ G+ P+ +Y+ L+ D KAA
Sbjct: 612 GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAA 671
Query: 161 LSVIDEMVNAGFAPS 175
+ D+M G P+
Sbjct: 672 FELHDDMCKKGINPN 686
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 76 VILGCANIWDLDRAYQTFEA-VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I GC + ++A F V TP ++NALI F KL K EA ++ E +V
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVD 819
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ PN ++Y++L++ H T + K A + EM P+
Sbjct: 820 NHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPN 860
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 36/134 (26%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLKKTFE-------- 124
+I G I DL++A F + + G+ PDI +YN LI Y ++K +E
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEM-TMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436
Query: 125 ------------------------ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
A+ +F+ ++S G+KPN + Y+ +V + + A
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEA 496
Query: 161 LSVIDEMVNAGFAP 174
+ ++ M + G +P
Sbjct: 497 IKILGVMKDQGLSP 510
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+++Y LI A+ ++ K E V + G PN ++YS+++ D AL
Sbjct: 228 IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEAL 287
Query: 162 SVIDEMVNAGFAP 174
+ M N G P
Sbjct: 288 ELKRSMANKGLLP 300
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++Y A I+ + + + A R F ++ G+ PN + + L+D + + + A
Sbjct: 542 GLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKA 601
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M++ G P +T
Sbjct: 602 FAKFRCMLDQGVLPDVQT 619
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + ++ +A + F+ + GL + +Y+ +I + K EA ++
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEK-GLARNSVTYSTIIAGYCKSANLTEAFQL 744
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F + +GV P++ Y L+D + + ALS+ MV G A +
Sbjct: 745 FHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAST 791
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L E S A N +I G + L AYQ E + + +TP+ +Y LI +
Sbjct: 781 LGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNH-ITPNHVTYTILIEYHCTV 839
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
EA ++F + V PN ++Y+ L+ + + S+ DEMV G P
Sbjct: 840 GNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKP 894
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A++ + + G+ P+I +YNALI KL + +A +F+ + G+ N+++Y
Sbjct: 667 DLKAAFELHDDMCKK-GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTY 725
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S ++ + + + A + M G P
Sbjct: 726 STIIAGYCKSANLTEAFQLFHGMKLVGVPP 755
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C+I G + RAY+ + +G G TP+I +YNA+I K + EA ++ +
Sbjct: 409 CLIDGHCKAGNFGRAYELMDLMGKE-GFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLK 467
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
G+ + ++Y++L+ D K AL++ M G P T + R+ E
Sbjct: 468 SGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEE 527
Query: 195 NDRV 198
++++
Sbjct: 528 SEKL 531
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+H+YN LI F + KK E+ ++FE V LG+ P +Y+ ++ + + +A
Sbjct: 504 GLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSA 563
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +M + G P T
Sbjct: 564 IKFFHKMRDYGCKPDSIT 581
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W ++A++ F + S P++++Y +I + K +K A + + G+ P
Sbjct: 344 CKKGWT-EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVP 402
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
N +Y+ L+D H + A ++D M GF P+
Sbjct: 403 NTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV-S 134
+I G I + +A++ E + G P+++++ ALI K T +A R+F LV S
Sbjct: 304 LINGLCKIGSIKQAFEMLEEMVRK-GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRS 362
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
KPN +Y+ +++ + A ++ M G P+ T
Sbjct: 363 DNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNT 406
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + F+T V ++ R + N +I G ++ A+ F+ +G
Sbjct: 233 CKVREFDTAKKVLVEM----RERGCGLNTVTYNVLIAGLCRSGAVEEAF-GFKKDMEDYG 287
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD +Y ALI K +++ EA + + + +KPN + Y+ L+D + + A
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 347
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEES 194
+I EMV AG P+K T VR C + +MD S
Sbjct: 348 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 382
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD++ YN+LI+ K+ + E+++ F + G+ PN +YS L+ +L N D ++A +
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 559
Query: 164 IDEMVNAGFAPS 175
+ M++ G P+
Sbjct: 560 VQRMLDTGLKPN 571
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ + + ++ G+ P+ +Y+ L+ K+ + AS + + +V +P+ ++Y+L
Sbjct: 344 DEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 402
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
+++ H + +K A ++ EM NAG +P+ T + C E+++D +E + K
Sbjct: 403 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 461
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G D ++A+ + + S G+ P+I YNALI K A VF +++
Sbjct: 648 LISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 706
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ PN ++Y+ L+D D A + +EM+ G P
Sbjct: 707 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 745
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++++Y+ +I+ + + +AS + E + + G+KPNA Y+ L+ + + A
Sbjct: 427 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 486
Query: 161 LSVIDEMVNAGFAP 174
+ D+M P
Sbjct: 487 CEIFDKMTKVNVLP 500
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+++ A++ + + G PD+H Y++LI K +A + + + GV PN + Y
Sbjct: 622 NMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 680
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ L+D + D A +V + ++ G P+
Sbjct: 681 NALIDGLCKSGDISYARNVFNSILAKGLVPN 711
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G D+ A F ++ + GL P+ +Y +LI K+ A +
Sbjct: 676 NIVCYNALIDGLCKSGDISYARNVFNSILAK-GLVPNCVTYTSLIDGSCKVGDISNAFYL 734
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ +++ G+ P+A YS+L + D + A+ +I+EM G A
Sbjct: 735 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA 779
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YN +I + +A R+ + + G+ PN +YS+++ + + + A +
Sbjct: 395 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454
Query: 164 IDEMVNAGFAPS 175
++EM G P+
Sbjct: 455 LEEMTTKGLKPN 466
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + + ++ + + F + GL P+ +Y+ LI+ + K A ++ + ++
Sbjct: 506 NSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 564
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
G+KPN + Y L++++ + D + S M++ G
Sbjct: 565 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 602
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N DLD AY F + ++ ++ +YN +I+AF + A ++F+ +V + P
Sbjct: 577 CKN-GDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGP 635
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESNDRV 198
+ +Y L+VD + + EM+ GF PS TL +V CV + E+ +
Sbjct: 636 DGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGII 695
Query: 199 EALAKK 204
+ +K
Sbjct: 696 HRMVQK 701
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ + N +I G + ++ A + + + + G+ PD+++YN+L+ K K +
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ +V G PN ++++L+++ R AL +++EM N P T
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +LD A + + G PD+ +YN LIY K K EA +V
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQ-GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV 313
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G++P++ +Y+ L+ + + A ++ + V GF P + T + +
Sbjct: 314 NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++YN LI + K A R+ V G P+ +Y L+D + A
Sbjct: 316 GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375
Query: 161 LSVIDEMVNAGFAPS 175
L++ +E + G P+
Sbjct: 376 LALFNEALGKGIKPN 390
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N L+ + + +K EA + E + + V P+A+++ L+D N D A
Sbjct: 526 GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGA 585
Query: 161 LSVIDEMVNA 170
++ +M A
Sbjct: 586 YTLFRKMEEA 595
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ + EP S AI V++ + D+A++ + + G+TPD++S+ +
Sbjct: 99 FERMDFYDCEPTVFSYNAIMSVLV---DSGYFDQAHKVYMRMRDR-GITPDVYSFTIRMK 154
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F K + A R+ ++ S G + N ++Y +V + + +M+ +G +
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSL 214
Query: 175 SKETLKKVRRRCVREMDEESNDRV 198
T K+ R ++ D + +++
Sbjct: 215 CLSTFNKLLRVLCKKGDVKECEKL 238
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + + P + N + L + D +A F +
Sbjct: 18 LITHFGKEGL--FDAAXSWLQKMEQDQVPGDLILYSNLIEL-SXKLCDYSKAISIFSRLK 74
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 75 RS-GFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 133
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 134 LEALSVFSEM 143
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP++ +Y ALI+A+ K KK A+ +FE ++S G PN ++YS L+D H + A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607
Query: 161 LSVIDEMVNAGFAP 174
+ + M + P
Sbjct: 608 CQIFERMCGSKDVP 621
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D AY+ + + G P++ +Y A+I FG + K + E + S
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEK-GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN ++Y +L+D N A ++++EM + +KV
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 855
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N ++ A+ FE + GL D+++Y ++ +F K +A + F + +G PN
Sbjct: 494 CNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L + A + + M++ G P+
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y +I K+ KT EA ++ + + G +PN ++Y+ ++D + L +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ M + G AP+ T + + C +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCK 826
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A NC+I G L +A + + ++ G+ DI ++++I KL + +A +F+
Sbjct: 469 AYNCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 527
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P+A+ Y++L+D + + AL V D MV+AG P+
Sbjct: 528 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD YN L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 532 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 591
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 592 LSLFREMLQRGIKPS 606
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + +++A + F+A+ S+ G+ P++ Y L+ + K+ + E +F ++
Sbjct: 541 NMLMDGYCLVGKMEKALRVFDAMVSA-GIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G+KP+ + YS+++D A EM +G A
Sbjct: 600 QRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIA 639
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 392 GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 451
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G AP K
Sbjct: 452 MEKFNQMIDQGVAPDK 467
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V A N VI G D+++A F+ + G+ PD+ +YN++++A K + +A
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAF 279
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CV 187
+V+ V PN +Y+ L+ + + K A+ V EM P TL + C
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339
Query: 188 REMDEESNDRVEALAKK--------FDIRMNTENRKNILFNL 221
+E+ D + +A K ++I +N K L ++
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 381
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNRDQ 157
G PD+ SY+ L+ + K+ +A + + G PN ++Y+ ++D D
Sbjct: 179 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDV 238
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A + EMV G P T V
Sbjct: 239 NKACDLFKEMVQRGIPPDLVTYNSV 263
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P++ +YN +I F K +A +F+ +V G+ P+ ++Y+ +V A R A +
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN P+ T
Sbjct: 279 FLRQMVNKRVLPNNWT 294
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SYN ++ + + + +F+ ++ G+ P+ ++++L+ A+ A
Sbjct: 357 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 416
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + +EM + G P T + V
Sbjct: 417 MIIFNEMRDHGVKPDVVTYRTV 438
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F+ + + PD+ + + L+ + K K EA VF+ +
Sbjct: 296 NNLIYGYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 354
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ SY+++++ + T + D M+ G AP
Sbjct: 355 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 395
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 94 EAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EA+G + G+ P++ +Y++L+Y + EA ++F +++ G KPN SY++L+
Sbjct: 321 EALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILI 380
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + A+ + +EM++ G P+
Sbjct: 381 NGYCKAKRIDEAMQLFNEMIHQGLTPN 407
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ +I G + + +A + F+ + + G PD+++YN +I K+ +T A+ +
Sbjct: 162 TIVTFTTLINGLCKVGEFAQAVELFDDMVAK-GCQPDVYTYNTIINGLCKIGETAAAAGL 220
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + G +PN ++YS L+D+ +R AL + M G +P
Sbjct: 221 LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISP 266
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +Y +LI K + EAS + + SL + P+ +++++LVD A
Sbjct: 263 GISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEA 322
Query: 161 LSVIDEMVNAGFAPSKET 178
L V+ M G P+ T
Sbjct: 323 LGVLKTMTEMGVEPNVVT 340
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +D A Q F + GLTP+ SYN LI+ F +L K EA +F ++
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQ-GLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMC 435
Query: 134 SLGVKPNAMSYSLLVDA 150
+ G P+ +YS+L+D
Sbjct: 436 TNGNLPDLFTYSILLDG 452
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 82 NIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
++W D+ A + F + + G P+I SYN LI + K K+ EA ++F ++ G+ PN
Sbjct: 349 SLWTDVVEARKLFHVMITK-GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPN 407
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+SY+ L+ + A + M G P
Sbjct: 408 NVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP 441
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S + PDI ++N L+ F K K EA V + + +GV+PN ++YS L+ + D
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354
Query: 158 KAALSVIDEMVNAGFAPS 175
A + M+ G P+
Sbjct: 355 VEARKLFHVMITKGCKPN 372
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + L A F + ++ G PD+ +Y+ L+ F K +A R+F +
Sbjct: 412 NTLIHGFCQLGKLREAQDLFRNMCTN-GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQ 470
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S +KPN + Y++LV A + + K A + E+ G P
Sbjct: 471 STYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQP 511
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + Y +I K EA F ++ + G P+ +SY++++ L ++D+ A
Sbjct: 508 GLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRA 567
Query: 161 LSVIDEMVNAGF 172
L ++ EM + GF
Sbjct: 568 LLLVGEMRDRGF 579
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 37 PLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
PL+ KGF + D + ++EN E +V N +I G ++ A F
Sbjct: 313 PLITGLLAKGFVKKADDLQLEMEN----EGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ + GL PD+ +YN+L+ + K EA +F L G+ P ++Y++L+D +
Sbjct: 369 M-RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLG 427
Query: 156 DQKAALSVIDEMVNAGFAP 174
D + A + +EMV G P
Sbjct: 428 DLEEARRLKEEMVEQGCLP 446
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN LI+A + +T A R F ++ G+ PN +Y+LL+D + + + A
Sbjct: 618 GVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDA 677
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ EM G P T K +
Sbjct: 678 MRFYFEMHQNGIHPDYLTHKAL 699
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +YN LI + +L EA R+ E +V G P+ +Y++L+ A
Sbjct: 408 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMA 467
Query: 161 LSVIDEMVNAGFAP 174
DEM++ G P
Sbjct: 468 REFFDEMLSKGLQP 481
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)
Query: 6 RAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
RA +TL A+ + M E S T Y +++ K D+ Q++ +
Sbjct: 491 RAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQ 550
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P C+I L A + F+ + S GL P +Y I+A+ + + A
Sbjct: 551 P--DCITYTCLIHAHCERGLLREARKFFKDMISD-GLAPSAVTYTVFIHAYCRRGNLYSA 607
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F ++ GV+PN ++Y++L+ A + A EM+ G P+K T
Sbjct: 608 YGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYT 660
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +YNA+I+ + + A F + ++G++P+ ++Y+ L++ + K A
Sbjct: 338 GIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEA 397
Query: 161 LSVIDEMVNAGFAPS 175
L + ++ +AG AP+
Sbjct: 398 LLLFGDLRHAGLAPT 412
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRD 156
+S G+ PD+ N ++ + + V ++ LG++P+ ++Y+ L+D+ L R+
Sbjct: 194 ASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRN 253
Query: 157 QKAALSVID-EMVNAGFAPSKETLKKVRRRCVREMD-EESNDRVEAL 201
K A+ + + E +G P+ T V R+ D EE+ + VE +
Sbjct: 254 DKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM 300
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N VI +D AY F+ + + G PD +YN L++ + EA R+
Sbjct: 179 STAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGVCRRGIVDEALRL 237
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + G++PN ++Y++LVD + A+ V++ M G + ++ T + + R
Sbjct: 238 VKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFR 297
Query: 189 EMDEESNDRV 198
+++E R+
Sbjct: 298 CLEKERAYRM 307
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD +S+NA I +F +++K +A ++F + GV P++ +Y+ L+ A R A
Sbjct: 560 GITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEA 619
Query: 161 LSVIDEM 167
+I M
Sbjct: 620 KEIILAM 626
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL + Y +L N+ A+ K V +I G + LD A+ F +
Sbjct: 463 FNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEM- 521
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S +G+ P++ +YN LI+ +A + + G+ P+A S++ + + R
Sbjct: 522 SEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKI 581
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A + ++M G +P T
Sbjct: 582 EKAQKLFNDMSRYGVSPDSYT 602
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y++LI + K+ +A +F++++ LG++P+ +Y+ L+D H + + A
Sbjct: 425 GVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERA 484
Query: 161 LSVIDEMVNAGFAP 174
LS+ D+MV AG P
Sbjct: 485 LSLHDKMVKAGVLP 498
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YNA++ A T A R F+ ++S GV PN +Y++L+ A +K A
Sbjct: 111 GYVPSVLAYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169
Query: 161 LSVIDEMVNAGFAPSKET 178
LS++ +M AG P+ T
Sbjct: 170 LSILRDMRGAGCGPNVVT 187
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ ++N+++ K K +A +VF+ ++ G+ P+ +SY+ LV + A
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEA 274
Query: 161 LSVIDEMVNAGFAP 174
LSV EM G P
Sbjct: 275 LSVFAEMTQKGIMP 288
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P + YNALI + + + EA + + + G+KP+ ++YS ++ A+ N D +A
Sbjct: 356 IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAF 415
Query: 162 SVIDEMVNAGFAPSKETLKKVRR 184
+ +M+ G P T + R
Sbjct: 416 ELNQQMLEKGVLPDAITYSSLIR 438
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN L+ AF + + A R+ ++ G+KPN ++++ +V+ + A
Sbjct: 180 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDA 239
Query: 161 LSVIDEMVNAGFAP 174
V DEM+ G AP
Sbjct: 240 RKVFDEMMREGLAP 253
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV A N V+L ++ L A + F+++ S G+ P++++YN LI A EA +
Sbjct: 115 SVLAYNAVLLALSDA-SLTSARRFFDSMLSD-GVAPNVYTYNILIRALCGRGHRKEALSI 172
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G PN ++Y+ LV A + A ++ M++ G P+ T
Sbjct: 173 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVT 222
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G ++ A + F+ + GL PD SYN L+ + K + EA VF +
Sbjct: 224 NSMVNGMCKAGKMEDARKVFDEMMRE-GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMT 282
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G+ P+ ++++ L+ + + A++++ +M G
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGL 321
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
FT L L V K F+ + S++ Q++ L + Y +NCV RA
Sbjct: 85 FTRL--LSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPC----RA-S 137
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
F G PD+ ++ +L++ F + +A +F+ +V +G +PN ++Y+ L+
Sbjct: 138 CFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCL 197
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKET 178
NR A+ + ++M + G P+ T
Sbjct: 198 CKNRHLNHAVEIFNQMGDNGIRPNVVT 224
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++ ALI AF K+ K EA +++ ++ + V P+ +Y+ L++ T A
Sbjct: 252 GIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEA 311
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M + G+ P++ T
Sbjct: 312 RQMFYLMESNGYYPNEVT 329
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
I+C+ C N L+ A + F +G + G+ P++ +YN+L+ ++ + +A+ + +
Sbjct: 194 IHCL---CKN-RHLNHAVEIFNQMGDN-GIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDM 248
Query: 133 VSLGVKPNAMSYSLLVDA 150
+ G++PN ++++ L+DA
Sbjct: 249 MKRGIQPNVITFTALIDA 266
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP++ +Y ALI+A+ K KK A+ +FE ++S G PN ++YS L+D H + A
Sbjct: 507 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 566
Query: 161 LSVIDEMVNAGFAP 174
+ + M + P
Sbjct: 567 CQIFERMCGSKDVP 580
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D AY+ + + G P++ +Y A+I FG + K + E + S
Sbjct: 709 MIDGLCKVGKTDEAYKLMQMMEEK-GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 767
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN ++Y +L+D N A ++++EM + +KV
Sbjct: 768 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 814
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N ++ A+ FE + GL D+++Y ++ +F K +A + F + +G PN
Sbjct: 453 CNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 511
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L + A + + M++ G P+
Sbjct: 512 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 546
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y +I K+ KT EA ++ + + G +PN ++Y+ ++D + L +
Sbjct: 701 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ M + G AP+ T + + C +
Sbjct: 761 LERMGSKGVAPNYVTYRVLIDHCCK 785
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
D + F+ FG+ P++ + N L+ A K A RV E + ++G PN ++Y+
Sbjct: 221 FDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYT 280
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET--------LKKVR-RRCVREMDEESND 196
++ +++ D A V E+++ G+ P T KK R V+ MDE +
Sbjct: 281 TILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEEN 340
Query: 197 RVE 199
RVE
Sbjct: 341 RVE 343
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+W+ + + FE G P +YNALI + + EA+R+++++V G PN
Sbjct: 430 GKVWEARKLFDEFEK-----GSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPN 484
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A +Y++L+ + + + V++EM++ G P+K T
Sbjct: 485 AFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKAT 522
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL-VSLGVKPNAMSYSLL 147
A +TF + SFGL P + S+N L+ + K+ +F++ G+ PN + ++L
Sbjct: 189 AIRTFLRI-PSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNIL 247
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
V A D AA+ V++EM GF P+ T + V + D RV
Sbjct: 248 VKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRV 298
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
D V+ +N + +V N ++ D+D A + E + + G P++ +Y
Sbjct: 221 FDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEM-PAMGFIPNVVTY 279
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
++ + A RVF ++ G P+ +Y++L+D + A+ V+DEM
Sbjct: 280 TTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEM 337
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y L+ + K + +A +V + + V+PN ++Y ++++A+ +
Sbjct: 306 GWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEV 365
Query: 161 LSVIDEMVNAGFAPS 175
L+++D+M+ + PS
Sbjct: 366 LNLLDDMLEKKYIPS 380
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD +AF E+ T + +D++ IF+ L+ AC + G + S + +
Sbjct: 672 VGDTGKAF----EYFTRLQNEGLDVD-IFT----YEALLKACCKSG--RMQSALAVTKEM 720
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S P S N +I G A D+ A + + G+ PDIH+Y + I A K
Sbjct: 721 SARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAG 778
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A++ E + +LGVKPN +Y+ L+ + ALS +EM G P K
Sbjct: 779 DMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDK 834
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 771 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 829
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A +++ EMV AG T +C+ ++
Sbjct: 830 IKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW-SKCLCKI 888
Query: 191 DEESNDRVEALAKKF 205
+ + E L K F
Sbjct: 889 EASGGELTETLQKTF 903
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDW 535
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 536 ANAFAVFEDMVKEGMKP 552
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++DRA QT + + P ++ +I+ + K + VF+ +
Sbjct: 558 NNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMR 616
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G P +++ L++ + R + A+ ++DEM AG + ++ T K+
Sbjct: 617 RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 665
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D +A++ F + + GL DI +Y AL+ A K + A V + + +
Sbjct: 665 IMQGYASVGDTGKAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 723
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD---- 191
+ N+ Y++L+D D A +I +M G P T C + D
Sbjct: 724 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783
Query: 192 EESNDRVEALAKKFDIRMNT 211
++ + +EAL K +I+ T
Sbjct: 784 TQTIEEMEALGVKPNIKTYT 803
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 541
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 542 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ ++ + + D + +L V D M G P+ T
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTF 627
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 287 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L+ A+ RD ALS + +M G S
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMS 378
>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rehmannii]
Length = 379
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 20 DYSKAIAIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSY 78
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 79 STLLTMYVENKKFLEALSVFSEM 101
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L A++ + + + G++P+ +++ ALI + EA+++F +V V PN ++Y
Sbjct: 475 ELHNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++L++ H + A ++DEMV G P T + +
Sbjct: 534 NVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +YN LI F KL + EA+ V +++ G+ P+ +SYS ++ + D K A
Sbjct: 672 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 731
Query: 161 LSVIDEMVNAGFAP 174
+ + + M+N G P
Sbjct: 732 IKLWESMLNRGVNP 745
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD SY+ +IY + + EA +++E +++ GV P+ ++Y+ L+ + A
Sbjct: 707 GISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKA 766
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D+M+ G P++ T
Sbjct: 767 FELRDDMMRRGVKPNRAT 784
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ ++ G ++ A+ V FG+ P + YNALI + K K EA +
Sbjct: 319 SEAAVSNLVDGLRKKGNIGSAFDLVNKV-KKFGVAPSLFVYNALINSMCKDGKLDEAESL 377
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F ++ G+ PN ++YS+L+D+ AL + +M G +
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A F +G GL P+ +Y+ LI +F K K A + +G+K YS
Sbjct: 371 LDEAESLFNNMGHK-GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYS 429
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ H +AA S+ DEM+ G P+
Sbjct: 430 SLISGHCKLGKLRAAKSLFDEMIANGLKPN 459
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ ++ Y++LI KL K A +F+ +++ G+KPN + Y+ L+ + +
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + EM G +P+ T
Sbjct: 477 HNAFRLYHEMTGKGISPNTYT 497
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
PY S+ + +C + L A F+ + ++ GL P++ Y +LI + K + A
Sbjct: 427 PYSSLISGHC------KLGKLRAAKSLFDEMIAN-GLKPNVVIYTSLISGYCKEGELHNA 479
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
R++ + G+ PN +++ L+ A + EMV P++ T
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD +AF E+ T + +D++ IF+ L+ AC + G + S + +
Sbjct: 669 VGDTGKAF----EYFTRLQNEGLDVD-IFT----YEALLKACCKSG--RMQSALAVTKEM 717
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S P S N +I G A D+ A + + G+ PDIH+Y + I A K
Sbjct: 718 SARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAG 775
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A++ E + +LGVKPN +Y+ L+ + ALS +EM G P K
Sbjct: 776 DMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDK 831
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 768 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 826
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A +++ EMV AG T +C+ ++
Sbjct: 827 IKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW-SKCLCKI 885
Query: 191 DEESNDRVEALAKKF 205
+ + E L K F
Sbjct: 886 EASGGELTETLQKTF 900
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDW 535
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 536 ANAFAVFEDMVKEGMKP 552
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
R+ E LD + L +S E Y + + G A++ D +A++ F + + GL
Sbjct: 638 RQAVEILDEM--TLAGVSANEHTYTKI------MQGYASVGDTGKAFEYFTRLQNE-GLD 688
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
DI +Y AL+ A K + A V + + + + N+ Y++L+D D A +
Sbjct: 689 VDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADL 748
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMD----EESNDRVEALAKKFDIRMNT 211
I +M G P T C + D ++ + +EAL K +I+ T
Sbjct: 749 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYT 800
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV------RRRCVRE 189
+P ++ ++ + + D + +L V D M G P+ T + +R+ V
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI 643
Query: 190 MDE 192
+DE
Sbjct: 644 LDE 646
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 541
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 542 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 287 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L+ A+ RD ALS + +M G S
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMS 378
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSV-AAINCVILGCANIWDLDRAYQTFEA 95
L+ + R G E ++ +LEN S +P S + INC+ D+D A+ F+
Sbjct: 325 LISSFGRAGRVEEAVKIFEELEN-SSCKPDIISFNSLINCL----GKNGDIDEAHMRFKE 379
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ GL+PD+ +Y+ LI FGK K A R+F+ +++ G PN ++Y++L+D +
Sbjct: 380 MREE-GLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSG 438
Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A+ + ++ G P T + R
Sbjct: 439 RTAEAVDLYAKLKQQGLTPDSITYAVLER 467
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL Y+ + G S PDI SYN LI +FG+ + EA ++FE L + KP+ +S+
Sbjct: 302 DLHDLYEKMKQDGPS----PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 357
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
+ L++ N D A EM G +P T + C + D+VE +
Sbjct: 358 NSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTL-IECFGK-----TDKVEMACRL 411
Query: 205 FD 206
FD
Sbjct: 412 FD 413
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+ Y F+ + PD ++Y +I GK+ K E+ +F+ + G PN ++Y+
Sbjct: 93 VDQVYMVFKDMKRKH-CEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYN 151
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
++ A NR + + +MV P+ T + V E D V ++ KF
Sbjct: 152 TMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKF 211
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++ D YN ++ A GKLKKT + ++E + G P+ SY++L+ + + A+
Sbjct: 280 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAV 339
Query: 162 SVIDEMVNAGFAP 174
+ +E+ N+ P
Sbjct: 340 KIFEELENSSCKP 352
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ ++++A F + G+ PDI SYN LI F K+K T A +FE + + PN +
Sbjct: 267 VKEVNKAKSIFNNMAQG-GVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVV 325
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y+ L+D + AL ++DEM + G P
Sbjct: 326 TYNSLIDGLCKSGKISYALKLVDEMHDRGQPP 357
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N +I G I D A FE + + P++ +YN+LI K K A ++
Sbjct: 289 IQSYNILINGFCKIKMTDAAMNLFEEMHCR-KIIPNVVTYNSLIDGLCKSGKISYALKLV 347
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVR 188
+ + G P+ ++YS L+DA N A++++ ++ + G P+ T + C
Sbjct: 348 DEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKG 407
Query: 189 EMDEESNDRVE-ALAKKFDIRMNT 211
E++ + E L K ++I +NT
Sbjct: 408 GRPEDAQNIFEDLLVKGYNINVNT 431
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y++L+ + +K+ +A +F ++ GV P+ SY++L++ + AA
Sbjct: 249 GFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAA 308
Query: 161 LSVIDEM 167
+++ +EM
Sbjct: 309 MNLFEEM 315
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
A + F K K EA VF ++ G KPN ++YS L+D + ++ A S+ + M
Sbjct: 224 APVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQG 283
Query: 171 GFAP 174
G P
Sbjct: 284 GVNP 287
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +LDR F+ V G +P +YN LI F KL + EAS +FE ++
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GV+PN +Y+ L+D K AL ++ M+ P+ T
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVT 354
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R SV NC++ LD+A++ FE + PD+ S+N +I K
Sbjct: 521 RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGD 579
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
A + + G+ P+ +YS L++ L A+S D+MV++GF P
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639
Query: 182 VRRRCVREMDEESNDRVEALAKKF---DIRMNTE 212
V + C+ + + D++ L KK DI ++ E
Sbjct: 640 VLKYCISQGE---TDKLTELVKKLVDKDIVLDKE 670
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+LD + E + R + + V + N +I G D+ A + S GL+PD+ +
Sbjct: 544 SLDQAWRLFEEMQR-DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM-SRAGLSPDLFT 601
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
Y+ LI F KL EA F+ +V G +P+A
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N +ILG + D RA + F A+ S GL P + A+I A G +T EA +FE +
Sbjct: 260 MNDIILGFSKAGDPTRAMR-FLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 318
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G +P +Y+ L+ ++ K A V+ EM AG P ++T
Sbjct: 319 RENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQT 364
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ +++Q + + S+ G+ PD H YN +I FGK A FE ++S G++P+ +++
Sbjct: 412 EWQKSFQVLKDMKSN-GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTW 470
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L++ H + A + EM G++P
Sbjct: 471 NTLINCHCKSGRHNMAEELFGEMQQRGYSP 500
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + + N+LI AFG+ ++ EA V +++ ++P+ ++Y+ L+ A + +
Sbjct: 602 GLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKV 661
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+V +EMV +G P ++ + + R +R M +
Sbjct: 662 PAVYEEMVTSGCTPDRKA-RAMLRSALRYMKQ 692
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
VIL N A FE + + G P +YNAL+ + K +A V +
Sbjct: 297 AVILALGNSGRTHEAEALFEEIREN-GSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEK 355
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GVKP+ +YSLL+DA+ ++A V+ EM + P+ ++
Sbjct: 356 AGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRI 403
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P I +YN +I + G+ ++ + S + S G+ PN+++Y+ LVD + + A
Sbjct: 497 GYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDA 556
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ + + GF P+
Sbjct: 557 IECLEVLKSTGFKPT 571
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P+ +Y L+ +GK + +A E L S G KP + Y+ L++A+ +
Sbjct: 530 SQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSE 589
Query: 159 AALSVIDEMVNAGFAPS 175
A++ M G PS
Sbjct: 590 LAVNAFRLMTTEGLTPS 606
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +++A F + G+ PD SYN +I F K+KK EA +F+ + + PN +
Sbjct: 296 VKQVNKANSIFNTMAQG-GVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVV 354
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y+ L+D + AL ++DEM + G P
Sbjct: 355 TYTSLIDGLCKSGKISYALKLVDEMHDRGVPP 386
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD++++N L+ F K K E VF ++ G+KPN ++Y L+D + + A
Sbjct: 244 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAN 303
Query: 162 SVIDEMVNAGFAPSKETLK-KVRRRC-VREMDEESN 195
S+ + M G P ++ + C ++++DE N
Sbjct: 304 SIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMN 339
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I + ++ A+ + + S G++PD+ +Y+ALI F + K +A +
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSE-GISPDVVTYSALISGFFIVGKLKDAIDL 235
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F ++ +KP+ ++++LVD + K +V M+ G P+ T
Sbjct: 236 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 285
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ YN +I + K+K EA ++ +VS G+ P+ ++YS L+ K A+ +
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDL 235
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
++M+ P T + ++ + V A+ K I+ N
Sbjct: 236 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 283
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G I +D A F+ + + P++ +Y +LI K K A ++ + +
Sbjct: 322 NIMINGFCKIKKVDEAMNLFKKMHCK-NIIPNVVTYTSLIDGLCKSGKISYALKLVDEMH 380
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
GV P+ ++YS ++DA N A++++ ++ + F
Sbjct: 381 DRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVF 419
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I+GC LD A + E + S GLTPD +YNAL+ K + E S++ E +V
Sbjct: 168 LIVGCCQTNALDEARKLMEKMKES-GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +P+ SY+ +V + + A ++++M+ P
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGP 265
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A+ +I G ++ D A + + V S G P++++Y+ LI K K+ +
Sbjct: 503 PPTSSHYAL--IIGGLCDVERGDEALKMLQ-VMSERGCEPNLYTYSILINGLCKTKRVED 559
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A V + ++ G P+ +Y+ L+D AA M ++G P K
Sbjct: 560 AINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDK 611
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L R P ++ N +I G +D ++ E + TPD+ +Y+ LI + K
Sbjct: 399 LERGCQP--NLVTFNTMIDGFCKAGKVDEGHKVLELM-KEVSCTPDVVTYSTLIDGYCK- 454
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A+R+ + LG+ P+ SYS +++ + + A V+D M G P+
Sbjct: 455 -----ANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPT 505
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ G L+ A++ E + PD+ +Y+ L+ KL K +A + E ++
Sbjct: 341 NCLLDGLCKAGKLEEAHELLEVMVEK-DCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399
Query: 134 SLGVKPNAMSYSLLVDA 150
G +PN ++++ ++D
Sbjct: 400 ERGCQPNLVTFNTMIDG 416
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L AY+ E + + G++PD+ +YN L+ K K EA + E +V P+ ++YS
Sbjct: 318 LADAYRVMEDMFKA-GISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYS 376
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+LV+ A +++ M+ G P+
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPN 406
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 49 TLDSVYFQLENLSRAEPPYKS------VAAINCVIL-GCANIWDLDRAYQTFEAVGSSFG 101
T+ Y Q+ +L RA ++ A C+++ G +D AYQ + +
Sbjct: 64 TILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK-D 122
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PD YN LI K+ K A V + ++ P+ ++Y+ L+ A
Sbjct: 123 CHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEAR 182
Query: 162 SVIDEMVNAGFAP 174
++++M +G P
Sbjct: 183 KLMEKMKESGLTP 195
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N +I F K K E +V E + + P+ ++YS L+D + + A
Sbjct: 402 GCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDA 461
Query: 161 LSVIDEMVNAGFAPSK 176
+++ G +P K
Sbjct: 462 FAIL------GISPDK 471
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
VA +I G I +D AYQ F+ + S G PD +YN LI F + +A V
Sbjct: 576 VATYTSLIDGFCKINKMDAAYQCFKTMRDS-GCEPDKLAYNILISGFCQSGNVEKAIEVM 634
Query: 130 EHLVSLGVKPNAMSY 144
+ ++ G P+A +Y
Sbjct: 635 QLMLEKGCNPDAATY 649
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFE-AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V N ++ G + +D A + E VG P + +Y LI F + + +A RV
Sbjct: 267 VVTYNSLMDGFCKVSKMDEAERLLEDMVGRR--CAPTVITYTTLIGGFSRADRLADAYRV 324
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E + G+ P+ ++Y+ L+D + A +++ MV AP
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAP 370
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P Y +I +++ EA ++ + + G +PN +YS+L++ + + A
Sbjct: 501 GCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDA 560
Query: 161 LSVIDEMVNAGFAPSKET 178
++V+D M+ G P T
Sbjct: 561 INVLDVMLEKGCVPDVAT 578
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD SYN ++ + K EA ++ E ++ P+ ++Y+ L+D A
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEA 286
Query: 161 LSVIDEMVNAGFAPS 175
++++MV AP+
Sbjct: 287 ERLLEDMVGRRCAPT 301
>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
Length = 981
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ C N DL+R +Q + S + D +YN LI G+ K+ +A +FE +
Sbjct: 396 NCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMK 455
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+G+KPN +S++ L+D+ + A +EM
Sbjct: 456 LIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEM 489
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL R F LNE + + I ++EI + L+ C RK F+ L
Sbjct: 406 GDLNRGFQLLNEMKQS---QTIQLDEI-----TYNTLIKGCGRKKRLNDALNLFEEMKLI 457
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF----G 117
+P + + N ++ C ++ A++ FE + +G+ PD +Y+ L+
Sbjct: 458 GIKP---NRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHS 514
Query: 118 KLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ A + E + G KP+ + Y+ L+DA + + + + + EM N PS
Sbjct: 515 NRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSS 574
Query: 177 ET 178
T
Sbjct: 575 VT 576
Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
LV AC R + LD ++ + P +V +I G + + A + F+ +
Sbjct: 615 LVDACVRN--DRLDQALQFIDQMKSQNLPINTVL-YTTIIKGFCKLNQTEEAIKYFDLMK 671
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S P++ +YN+L+ K +A ++F+ LV +KP+ +++S L+ H +
Sbjct: 672 QSPKTYPNLITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHCRKGNM 731
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
K + M +P + L+ + C+ +
Sbjct: 732 KRLNETVQIMTGLQISPDESLLQLILEACLNQ 763
Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N + +N +L RA E + + PD YN+LI A K + + +F +
Sbjct: 506 VNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREM 565
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+ ++P++++Y +L+ A+ D A + +EM + T + CVR
Sbjct: 566 KNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVR---- 621
Query: 193 ESNDRVEALAKKFDIRMNTEN 213
NDR++ A +F +M ++N
Sbjct: 622 --NDRLDQ-ALQFIDQMKSQN 639
>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
CCMP526]
gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
Length = 1057
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 17/185 (9%)
Query: 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
D +A L + D I D LY +A + E + V + LE + R
Sbjct: 665 DWNKALSLLRDVSAQGRDGIGDQGSGKGGTKELYEKAMAAFGRAGE-WEKVLWLLEGMDR 723
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFG 117
+ ++A C G W+ EAVG +S G+ PD SYN I+A
Sbjct: 724 PDQKVTNLAMRACAQAG---RWE--------EAVGLLQNMTSKGIAPDQWSYNTAIHACA 772
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ +A ++ + + GV P+ +SY+ +DA + D + +L +++EMV G P+
Sbjct: 773 QAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHR 832
Query: 178 TLKKV 182
+ +
Sbjct: 833 SFNAI 837
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I CA + ++A + + +G G+ PD+ SY + A + + R+ E +V
Sbjct: 765 NTAIHACAQAGNAEKALKLLKEMGQE-GVVPDVVSYTTAMDACASVGDVETSLRLLEEMV 823
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
GV PN S++ ++ AH A++V+ M G P ++ C+R+
Sbjct: 824 KKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQ 879
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 22/159 (13%)
Query: 31 PFTSLYP-----------LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79
P SL+P +V +++G+ L L NL P + +++
Sbjct: 133 PHASLHPPLLLDDERQAAIVSKLAKEGY--LKQAVKLLSNLKAPSPLL-----VRTLLMA 185
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N L A AV + P + Y +I + ++ FEA R+ + + G P
Sbjct: 186 CVNAESLPLAL----AVVKMPHVHPSVQQYTLVIQICARQERWFEAVRLLRDMRTRGAPP 241
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++Y+ ++D +AAL++I EM AG P + T
Sbjct: 242 DLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRIT 280
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
CA++ D++ + + E + G+ P+ S+NA++ A G + EA V + G+ P
Sbjct: 806 CASVGDVETSLRLLEEM-VKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTP 864
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ SY+L +D L + AL +++ M
Sbjct: 865 DVKSYTLAMDICLRQGLWQVALKIVERM 892
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N + C++ D A+Q + + ++ G+ PD+ SY ++ + A+ V
Sbjct: 513 NVVTYNSAMQACSSGGRPDLAFQLLQVMKAN-GVEPDVVSYTTVM----QRSSVDVATSV 567
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + GV M+Y+ L++A D + +L++++EM + AP+ T C R
Sbjct: 568 LNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGR 627
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S + +S P ++ N +I G A D+ A + +
Sbjct: 697 LLKACCKSG--RMQSALAVTKEMSAQNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMK 753
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K AS++ E + + GVKPN +Y+ L+
Sbjct: 754 QG-GVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLP 812
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ AL EM AG P K
Sbjct: 813 EKALRCFQEMKLAGLKPDK 831
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + SY LI + K+ K +A V + + S G+K N +YS+L++ L +D A
Sbjct: 476 GFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANA 535
Query: 161 LSVIDEMVNAGFAP 174
++ +++V G P
Sbjct: 536 FAIFEDVVKDGLKP 549
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C D+ RA + E + +S G+ P++ +Y LI+ + + +A R F+ + G
Sbjct: 768 INACCKAGDMLRASKMMEEMETS-GVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAG 826
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ A L+ + LS+ EM+ +G T + +R++
Sbjct: 827 LKPDKAVYHCLMTALLSRATVTEAYVRPGILSICKEMIESGLIVDMGTAVHW-SKSLRKI 885
Query: 191 DEESNDRVEALAKKF 205
+ + EAL K F
Sbjct: 886 ERTGGELTEALQKTF 900
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 46 GFETLDSVYFQLENLS--RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
G T+D ++ + R P ++ I I G A ++ RA F+ + S G
Sbjct: 563 GMGTMDRAICMVKEMQKERHRPTSRTFMPI---IHGFARAGEMKRALDVFDMMRRS-GCI 618
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P +H++NALI + ++ +A + + + GV PN +Y+ ++ + D A
Sbjct: 619 PTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEY 678
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ + G T + + + C +
Sbjct: 679 FTKLRDEGLQLDVYTYEALLKACCK 703
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + C+I A + + +A + + + S+ G+ ++ +Y+ LI F KLK A +
Sbjct: 480 SVVSYGCLINLYAKVGKISKALEVSKMMESA-GIKHNMKTYSMLINGFLKLKDWANAFAI 538
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
FE +V G+KP+ + Y+ ++ A A+ ++ EM P+ T +
Sbjct: 539 FEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPI 592
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
K E LD + L +S E Y ++ + G A + D +A++ F + GL
Sbjct: 639 KAIEILDEM--ALAGVSPNEHTYTTI------MHGYAALGDTGKAFEYFTKLRDE-GLQL 689
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+++Y AL+ A K + A V + + + + N Y++L+D D A ++
Sbjct: 690 DVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLM 749
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMD 191
+M G P T C + D
Sbjct: 750 QQMKQGGVKPDIHTYTSFINACCKAGD 776
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI + + +EA+ + + + GVKP+ +Y+ ++A D A +++EM
Sbjct: 729 YNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEME 788
Query: 169 NAGFAPSKET 178
+G P+ +T
Sbjct: 789 TSGVKPNVKT 798
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ RA QTFE++ + G+ P H Y +LI+A+ + EA + GV+ + ++Y
Sbjct: 321 DMHRARQTFESM-RARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTY 379
Query: 145 SLLVD--AHLTNRD 156
S++V A + N D
Sbjct: 380 SIIVGGFAKIGNAD 393
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P Y ++ + + A + FE + + G++P + Y+ L+ A+ RD + ALS
Sbjct: 304 PSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 363
Query: 164 IDEMVNAG 171
+M G
Sbjct: 364 ARKMKEEG 371
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 17 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 73
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD+ +YNA+I FGK K EA + + GV PN SYS L+ ++ N+
Sbjct: 74 RS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKF 132
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 133 LEALSVFSEM 142
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 239
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 240 ANNLIQEMQSRGIEPNSIT 258
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 30 SPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
SP+T PL+ +KG ++++ E ++R P +VA+ N ++ G + A
Sbjct: 306 SPYT-YNPLICGYCKKGL-LVEALALWEEMVTRGVSP--TVASHNTIMYGFCKEGKMSDA 361
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
Q + L PDI SYN LIY F +L EA + + L + N ++Y+ L+D
Sbjct: 362 RQQLSDMLKK-NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLID 420
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
D + AL + ++M+N G P
Sbjct: 421 GLCRLGDLETALKLKEDMINRGIHP 445
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + DL+ A + E + + G+ PD+ +Y L+ KL A
Sbjct: 411 NIVTYNTLIDGLCRLGDLETALKLKEDMINR-GIHPDVVTYTVLVNGACKLGNMLMAKEF 469
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ +G+ P+ +Y+ + L D A + +EM+ GF P
Sbjct: 470 FDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPP 515
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LSR + P +V +I A LD A F + G+ P++ +YN LI F K+
Sbjct: 579 LSRGQTP--TVVTYTVLIHAHALNGRLDWAMAYFLEMQEK-GVVPNVITYNVLINGFCKV 635
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+K +A + F + G+ PN +Y++L++ + + AL + +M+ P T
Sbjct: 636 RKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTH 695
Query: 180 KKVRRRCVREMDEESNDRVEAL 201
+ ++ ++ ++ +E+L
Sbjct: 696 GALLKKLDKDYKVQAVQFIESL 717
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I+G + D +A++ E + + G PD+ +YN + KL EA + + ++ G
Sbjct: 489 IVGELKLGDTAKAFKLQEEMLTK-GFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDG 547
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ ++Y+ + AH+ N + + +M++ G P+ T
Sbjct: 548 HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVT 589
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +A + + +G +G+ P + +YN ++++F K + A + + G P+ ++++
Sbjct: 218 LVKALEVYRMMGE-YGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFN 276
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L++ + + A +I EM AG S T
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYT 309
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +Y A I KL T +A ++ E +++ G P+ ++Y++ V+ + + A
Sbjct: 477 GLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEA 536
Query: 161 LSVIDEMVNAGFAPSKET 178
++ +M+ G P T
Sbjct: 537 GELLQKMIRDGHVPDHVT 554
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ +++Q + + SS G+ PD H YN +I FGK A FE ++S G+ P+ +++
Sbjct: 396 EWQKSFQVLKDMKSS-GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTW 454
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+D H + A + EM G++P
Sbjct: 455 NTLIDCHCKSGRHDMAEELFSEMQQRGYSP 484
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+N +I+G + D RA + F A+ S GL P + A+I A G +T EA +FE +
Sbjct: 244 MNDIIVGFSKAGDPTRAMR-FLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 302
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++P +Y+ L+ ++ K A V+ EM AG P ++T
Sbjct: 303 RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQT 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + + N+LI AFG+ ++ EA V +++ ++P+ ++Y+ L+ A + +
Sbjct: 586 GLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKV 645
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+V +EMV +G P ++ + + R +R M +
Sbjct: 646 PAVYEEMVASGCTPDRKA-RAMLRSALRYMKQ 676
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
++V S+ G T + + + P ++ A VIL N A FE +
Sbjct: 247 IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVA---VILALGNSGRTHEAEALFEEIR 303
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL P +YNAL+ + + +A V + GVKP+ +YSLL+D +
Sbjct: 304 EN-GLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRW 362
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
++A V+ EM + P+ ++
Sbjct: 363 ESARIVLKEMEASNVQPNSYVFSRI 387
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P I +YN +I + G+ ++ + + + S G++PN+++Y+ LVD + + A
Sbjct: 481 GYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDA 540
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ + + GF P+
Sbjct: 541 IECLEVLKSTGFKPT 555
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P+ +Y L+ +GK + +A E L S G KP + Y+ L++A+ +
Sbjct: 514 SQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSE 573
Query: 159 AALSVIDEMVNAGFAPS 175
A++ M G PS
Sbjct: 574 LAVNAFRLMTTEGLTPS 590
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
+ N +I G N +DRA + E + S G PDI +YN L+ A K K +A +
Sbjct: 358 SFNPLIQGFCNGKGIDRAIEYLEIM-VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ 416
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
L S G P+ +SY+ ++D L + A+ +++EM G P T V RE
Sbjct: 417 LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGK 476
Query: 192 EESNDRVEALAKKFDIRMN 210
+ K+F IR N
Sbjct: 477 VREAMKFFHYLKRFAIRPN 495
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +YN LI F K + EA R + L S G +P+ +S+++++ + + A
Sbjct: 246 GCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDA 305
Query: 161 LSVIDEMVNAGFAPS 175
+ ++ M+ G PS
Sbjct: 306 MKLLATMLRKGCLPS 320
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D+V + S+ P S+ + N VI G + + A + E + GL PD+ +
Sbjct: 409 DAVVILSQLSSKGCSP--SLISYNTVIDGLLKVGKAELAVELLEEMCYK-GLKPDLITCT 465
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+++ + K EA + F +L ++PNA Y+ ++ ++ A+ + +MV
Sbjct: 466 SVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAK 525
Query: 171 GFAPSKET 178
G P++ T
Sbjct: 526 GCKPTEAT 533
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +A E + G TP+ S+N LI F K A E +VS G P+ ++Y+
Sbjct: 337 LGKALNVLEMM-PKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYN 395
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L+ A + A+ ++ ++ + G +PS
Sbjct: 396 ILLTALCKDGKVDDAVVILSQLSSKGCSPS 425
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +PD+ + ALI F K+ +T AS++ L G + SY++L+ + + + + A
Sbjct: 109 GKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEA 168
Query: 161 LSVIDEMVNAGFAPSKET 178
L V+D M G +P+ T
Sbjct: 169 LRVLDRM---GVSPNAAT 183
>gi|407410963|gb|EKF33209.1| hypothetical protein MOQ_002928, partial [Trypanosoma cruzi
marinkellei]
Length = 830
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 32 FTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILG-CANIWDLDRA 89
T+ L AC RKG ++ +Y QL L P + + LG CA + D+ +A
Sbjct: 167 LTTYQMLFRACERKGQYQRAFLLYKQLRELMHIVPDSPTYDTL----LGFCAALRDVAQA 222
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
E + + G+TP++++YN L+ + E RVF ++ G+KP +Y+ L
Sbjct: 223 SYFLEEMKQN-GVTPNVNTYNCLMSVLVESAPYSETLRVFMQMIEKGIKPTIRTYNTLSK 281
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
A + D A + +EM G P
Sbjct: 282 AARIHGDYDRAFQLFEEMKKHGMLP 306
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
C RA+ ++ + + PD +Y+ L+ L+ +AS E + GV
Sbjct: 176 ACERKGQYQRAFLLYKQLRELMHIVPDSPTYDTLLGFCAALRDVAQASYFLEEMKQNGVT 235
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
PN +Y+ L+ + + L V +M+ G P+ T
Sbjct: 236 PNVNTYNCLMSVLVESAPYSETLRVFMQMIEKGIKPTIRT 275
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFE--HLVSLGVKPNAMSYSLLVDAHLTNRD 156
SF + PD+ +YNA++ + +KK E + F +L V N ++ ++ H RD
Sbjct: 573 SFNVRPDVETYNAMLRGYLCMKKYDEVEKFFSSMYLSYSQVTCNEETFCWMLRVHREKRD 632
Query: 157 QKAALSVIDEM 167
+AA +++ M
Sbjct: 633 TEAATQLLESM 643
>gi|296088922|emb|CBI38482.3| unnamed protein product [Vitis vinifera]
Length = 368
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN+LI K + EA +F+ L G+ P+A++Y+ L+ H A
Sbjct: 275 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 334
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
++ V++GF P++ T + ++E D+E
Sbjct: 335 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 367
>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
Length = 608
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 17 AYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVY------------FQLENLSRAE 64
AYG + + EE + F + V +RK + L + F+ R E
Sbjct: 326 AYGKARRE-EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVE 384
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + ++L N D+D A + F + GL P++ Y L+ + KL
Sbjct: 385 P---DLCSYTTMVLAYVNASDMDGAEKFFRRIKED-GLKPNVVVYGTLMKGYSKLNNVER 440
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
RV+E + GV+PN Y+ ++D H N D A+ EM G+ K+
Sbjct: 441 VMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKK 493
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
L PD+ SY+ LI A+GK ++ EA VFE ++ GV+P SY++L+DA
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E S +++ + +KP+ +SYSLL+ A+ R ++ AL+V +EM++AG P++++
Sbjct: 300 EVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 354
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ + D RA + + + G P + S AL+ A+G+ K+ +A VF + +
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKK-GYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTS 206
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN---AGFAPSKE 177
G +P+A++Y +++ + + K A ++ ++++N A F P ++
Sbjct: 207 GPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQK 251
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
L+ A+GKL A RV +++ G KP+ +S + L++A+ + + A +V M +G
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSG 207
Query: 172 FAPSKET 178
PS T
Sbjct: 208 PEPSAVT 214
>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 473
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 29 FSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
+ PF Y ++ K ++ ++ VY Q+ L P V N ++ + +
Sbjct: 215 YRPFKHSYNAILNSLLGVKQYKLIEWVYKQM--LEDGFSP--DVLTYNILLWTNYRLGKM 270
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR + F+ + G +PD ++YN L++ GK K A H+ +G+ P+ + Y+
Sbjct: 271 DRFDRLFDEMARD-GFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTT 329
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D + +A +DEMV AG P
Sbjct: 330 LIDGLSRAGNLEACKYFLDEMVKAGCRP 357
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ +C G V F P S AI +LG + Y+ E V
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGV-------KQYKLIEWVY 242
Query: 98 SSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
G +PD+ +YN L++ +L K R+F+ + G P++ +Y++L+ H+
Sbjct: 243 KQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILL--HILG 300
Query: 155 RDQK--AALSVIDEMVNAGFAPS 175
+ K AAL+ ++ M G PS
Sbjct: 301 KGNKPLAALTTLNHMKEVGIDPS 323
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ SR G L++ + L+ + +A V +I G +LD+A + F +
Sbjct: 330 LIDGLSRAG--NLEACKYFLDEMVKAGCR-PDVVCYTVMITGYVVSGELDKAKEMFREMT 386
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G P++ +YN++I + EA + + + S G PN + YS LV
Sbjct: 387 VK-GQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKL 445
Query: 158 KAALSVIDEMVNAG 171
A VI EMV G
Sbjct: 446 SEARKVIREMVKKG 459
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + +++A+ +A+ S G+ PD+ +YN L+ + K K + +
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAM-VSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCV 187
F ++ VKP ++YS+++D AA + EM+++G A +T K ++ C
Sbjct: 638 FREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697
Query: 188 REMDEESN---DRVEALAKKFDI 207
++ +E+ ++ A+ KFDI
Sbjct: 698 NDLTDEAITLFHKLGAMDCKFDI 720
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 7 AFITLNEFETA---YGDSIIDMEEIFSPFTS--LYPLVVACS--RKGFETLDSVYFQLEN 59
+T N F ++ +G S D EEIF T+ P +V+ S G+ T + + + N
Sbjct: 368 GIVTFNSFMSSLCKHGRSK-DAEEIFQYMTTKGHMPDLVSYSILLHGYAT-EGRFADMNN 425
Query: 60 LSRAEPPYKSVAAINC---VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L + VA +C +I A +D A F + G+ PD+ +Y+ LI AF
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQ-GVRPDVVTYSTLISAF 484
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
++ + +A F ++S+G++PN + Y L+ + D A ++ EM++ G
Sbjct: 485 CRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGI 540
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ S+N +I+ F K + +A + +V GV+P+ ++Y+ +VDA R A
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320
Query: 163 VIDEMVNAGFAPSKET 178
V+ +MV+ G P T
Sbjct: 321 VLRQMVDKGVEPDGLT 336
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E LD V + R P V + N VI G ++ +A + G+ PD+
Sbjct: 245 EALDMVQRMAKEGGRCSP---DVVSFNTVIHGFFKQGEVSKACNLINEMVQK-GVEPDVV 300
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN+++ A K + +A V +V GV+P+ ++Y+ ++ + + K + + +M
Sbjct: 301 TYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKM 360
Query: 168 VNAGFAPSKET 178
+ G P T
Sbjct: 361 TSKGLIPGIVT 371
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 25 MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAI---------NC 75
M+E FT + V + TL S + ++ L+ A + + +I +
Sbjct: 455 MDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G DL +A + + S P+I ++++I++ + +A VF ++ +
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +P ++++ L+D + + A V+D MV+ G P
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEP 613
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + H +N LI A K EA VF + GV+P+ ++YS L+ A A
Sbjct: 434 GIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADA 493
Query: 161 LSVIDEMVNAGFAPS 175
+ +M++ G P+
Sbjct: 494 MEKFSQMISIGLEPN 508
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKT 122
P ++ + +I N + A+ F V G P I ++N+LI + GK++K
Sbjct: 541 PRPNIVFFSSIIHSLCNEGRVMDAHDVFNLV-IHIGDRPTIVTFNSLIDGYCLVGKMEKA 599
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F V + +VS+G++P+ ++Y+ LV + + L + EM++ P+ T
Sbjct: 600 FG---VLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVT 652
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A F +G+ DI N +I A K+++ EA+ +F + + G+ PN +Y +
Sbjct: 702 DEAITLFHKLGA-MDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGV 760
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
++ L + A ++ M +G APS L + R +++ D
Sbjct: 761 MIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGD 805
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C+ W + + F + +S GL P I ++N+ + + K ++ +A +F+++ + G P
Sbjct: 346 CSGHWK--ESAKMFRKM-TSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMP 402
Query: 140 NAMSYSLLVDAHLT 153
+ +SYS+L+ + T
Sbjct: 403 DLVSYSILLHGYAT 416
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY+ L++ + + + + +F + G+ N +++L+ AH A
Sbjct: 399 GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEA 458
Query: 161 LSVIDEMVNAGFAP 174
+ V EM G P
Sbjct: 459 MLVFTEMQGQGVRP 472
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+A N +I G + D A + + G DI YN LI A GK + E +++F
Sbjct: 632 IATYNMIIQGLGKMGRADLASAVLDRLLRQGGYL-DIVMYNTLINALGKASRIDEVNKLF 690
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E + S G+ P+ ++Y+ L++ H K A + M++AG +P+ T RE
Sbjct: 691 EQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVT-DTTLDYLGRE 749
Query: 190 MDEESNDRVEALAKKFD 206
+D+ R L++K D
Sbjct: 750 IDKLRYQRASILSEKDD 766
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I C+ + ++ A + F + S+ G PD +YN+L+ K K EA ++FE +V
Sbjct: 291 LIQACSKTYRMEDAIRIFNQMQSN-GFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQE 349
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV+P+ +Y++L+ N +AA ++ ++ G
Sbjct: 350 GVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKG 385
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + +D A +E + S PD +Y LI A K + +A R+F +
Sbjct: 254 NSLITALCRLGKVDDAITVYEELNGS-AHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQ 312
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S G +P+ ++Y+ L+D H A + ++MV G PS T
Sbjct: 313 SNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWT 357
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 79 GCANIW-DLDRAYQTF-EAVGSSFG-LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
GC W DL + F E G + G + PD+ +YN+LI A +L K +A V+E L
Sbjct: 223 GC---WGDLATCFALFKEMKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGS 279
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+P+ +Y+ L+ A + A+ + ++M + GF P
Sbjct: 280 AHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSNGFRP 318
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY LI F KL +AS +F+ +V G+ PN + Y++L+ + + + A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEM G P+ T
Sbjct: 682 KELLDEMSVKGLHPNAVT 699
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V + +I G + + ++ +A F+ + GLTP++ YN L+ F + +
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGE 677
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A + + + G+ PNA++Y ++D + + D A + DEM G P
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 182 VRRRCVREMDEE 193
+ C R D E
Sbjct: 738 LVDGCCRLNDVE 749
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI YN+LI K K+ EA +V G+KPNA +Y + ++ + +A
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541
Query: 161 LSVIDEMVNAGFAPSK 176
+ EM G P+K
Sbjct: 542 DKYVKEMRECGVLPNK 557
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P ++Y+ LI K+K+ +A + + SLGV + +YSLL+D L R+ AA
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 161 LSVIDEMVNAGF 172
++ EMV+ G
Sbjct: 332 KGLVHEMVSHGI 343
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+ A + F + ++ L P + +Y +L+ + K+ + E VF+ ++ G++P+ + Y
Sbjct: 820 NLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S++++A L AL ++D+M
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQM 901
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLK-KTFEASRVFEHLVS 134
GC + D++RA F + G +NALI + FGK + KT +R+ +
Sbjct: 741 GCCRLNDVERAITIFGT--NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KPN ++Y++++D + +AA + +M NA P+
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
>gi|297851040|ref|XP_002893401.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339243|gb|EFH69660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGL 102
+RK F+ + Q++NL+ A +I G + AY+T EAV +
Sbjct: 305 ARKVFDEMRERGVQVDNLTWAS-----------IIYGLLVKRRVAEAYKTVEAVEN---- 349
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PDI Y+ALI K+K+ EA+ VF ++ G +P +Y +L+ HL R +K
Sbjct: 350 -PDISIYHALIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHLGRRGRKGPDP 408
Query: 163 VID-------EMVNAGFAPSKETLKKVRRRCVREMD 191
+++ M+ AG ET K V R R ++
Sbjct: 409 LVNFDTIFVGGMIKAG--KRLETTKYVERTLKRGLE 442
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 24 DMEEI-FSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80
+ME + SP Y +++ C+ + + ++ +++N E + S N +I G
Sbjct: 398 EMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKN----ERIFPSSVTYNSLIHGF 453
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+++++A + SS G+ P+I +++ LI + K++ A ++ + G+ P+
Sbjct: 454 CKEYNIEKALDLCSEMTSS-GVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPD 512
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
++Y+ L+DAH + K AL + +M+ AG P+ T
Sbjct: 513 VVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 551
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L + P + +A+ I G +L +AY ++ + + L P++ + L+
Sbjct: 291 FELMKIHGVVPNLYTYSAM---IDGYCKTGNLRQAYGLYKEILVA-ELLPNVVVFGTLVD 346
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K ++ A +F H+V GV PN Y+ L+ + + A+ ++ EM + +P
Sbjct: 347 GFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSP 406
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ P+++ YN LI+ K EA + + SL + P+ +Y++L++ T
Sbjct: 367 FGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAE 426
Query: 160 ALSVIDEMVNAGFAPSKET 178
A + M N PS T
Sbjct: 427 ANRLFQRMKNERIFPSSVT 445
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ P+++ Y I + K EA ++FE + GV PN +YS ++D + +
Sbjct: 260 TSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNL 319
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A + E++ A P+
Sbjct: 320 RQAYGLYKEILVAELLPN 337
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A + FE + G+ P++++Y+A+I + K +A +++ ++ + PN + +
Sbjct: 284 MEEAEKMFELM-KIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFG 342
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LVD R+ AA S+ MV G P+
Sbjct: 343 TLVDGFCKARELVAARSLFVHMVKFGVDPN 372
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R P K+ AI + G D + ++ + S GL PD+H Y+ L K
Sbjct: 193 RCSPDSKACLAI---LNGLVRRRRFDSVWVDYQLMISR-GLVPDVHIYSVLFQCCFKQGF 248
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ + + SLGVKPN Y++ + + A + + M G P+ T
Sbjct: 249 PSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYT 305
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+ PD+ +Y LI A K EA R++ ++ G+ PN +++ LVD
Sbjct: 508 GIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDG 557
>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 609
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 17 AYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVY------------FQLENLSRAE 64
AYG + + EE + F + V +RK + L + F+ R E
Sbjct: 326 AYGKARRE-EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVE 384
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + ++L N D+D A + F + GL P++ Y L+ + KL
Sbjct: 385 P---DLCSYTTMVLAYVNASDMDGAEKFFRRIKED-GLKPNVVVYGTLMKGYSKLNNVER 440
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
RV+E + GV+PN Y+ ++D H N D A+ EM G+ K+
Sbjct: 441 VMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKK 493
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
L PD+ SY+ LI A+GK ++ EA VFE ++ GV+P SY++L+DA
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E S +++ + +KP+ +SYSLL+ A+ R ++ AL+V +EM++AG P++++
Sbjct: 300 EVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 354
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ + D RA + + + G P + S AL+ A+G+ K+ +A VF + +
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKK-GYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTS 206
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN---AGFAPSKE 177
G +P+A++Y +++ + + K A ++ ++++N A F P ++
Sbjct: 207 GPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQK 251
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
L+ A+GKL A RV +++ G KP+ +S + L++A+ + + A +V M +G
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSG 207
Query: 172 FAPSKET 178
PS T
Sbjct: 208 PEPSAVT 214
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L A++ + + + G++P+ +++ ALI + EA+++F +V V PN ++Y
Sbjct: 475 ELHNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++L++ H + A ++DEMV G P T + +
Sbjct: 534 NVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +YN LI F KL + EA+ V +++ G+ P+ +SYS ++ + D K A
Sbjct: 769 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 828
Query: 161 LSVIDEMVNAGFAP 174
+ + + M+N G P
Sbjct: 829 IKLWESMLNRGVNP 842
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD SY+ +IY + + EA +++E +++ GV P+ ++Y+ L+ + A
Sbjct: 804 GISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKA 863
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D+M+ G P++ T
Sbjct: 864 FELRDDMMRRGVKPNRAT 881
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ ++ G ++ A+ V FG+ P + YNALI + K K EA +
Sbjct: 319 SEAAVSNLVDGLRKKGNIGSAFDLVNKV-KKFGVAPSLFVYNALINSMCKDGKLDEAESL 377
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F ++ G+ PN ++YS+L+D+ AL + +M G +
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A F +G GL P+ +Y+ LI +F K K A + +G+K YS
Sbjct: 371 LDEAESLFNNMGHK-GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYS 429
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ H +AA S+ DEM+ G P+
Sbjct: 430 SLISGHCKLGKLRAAKSLFDEMIANGLKPN 459
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ ++ Y++LI KL K A +F+ +++ G+KPN + Y+ L+ + +
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + EM G +P+ T
Sbjct: 477 HNAFRLYHEMTGKGISPNTYT 497
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
PY S+ + +C + L A F+ + ++ GL P++ Y +LI + K + A
Sbjct: 427 PYSSLISGHC------KLGKLRAAKSLFDEMIAN-GLKPNVVIYTSLISGYCKEGELHNA 479
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
R++ + G+ PN +++ L+ A + EMV P++ T
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 57 LENLSRAEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
L ++SR E K +V N ++ G + D A Q FE + + G+ P I SYN+LI+
Sbjct: 201 LNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ-GMIPSIISYNSLIHG 259
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K E+ R+ + ++ G++P+ +++++L+D A ++ M+ +G P
Sbjct: 260 FCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + DL+ A + F ++ S G PD+ SYN LI + K K EA +++ ++
Sbjct: 324 NSLIEGFCMVGDLNSARELFVSMPSK-GCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382
Query: 134 SLGVKPNAMSY-SLLVDAHLTNR--DQKAALSVI 164
+G +PN ++Y SLL L + D K SV+
Sbjct: 383 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 416
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
++L C + +++R + F A G +P+I +YN LI + EA+R+F +
Sbjct: 109 ILLNC--LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
LG P+ ++Y L+ + AL + EM+N
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN 202
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN+LI F + A +F + S G +P+ +SY++L++ + + A
Sbjct: 315 GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEA 374
Query: 161 LSVIDEMVNAGFAPS 175
+ + +EM+ G P+
Sbjct: 375 MKLYNEMLLVGKRPN 389
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C ET ++ +L N EP +V +I G +D+A + + ++ G
Sbjct: 471 CKAGKLETAWELFEKLSNEGH-EP---NVVTYTIMIHGFCREGQVDKANVLIQKMEAN-G 525
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
TPDI +YN L+ F + K E ++ + V P+A++ S++VD + ++D+K
Sbjct: 526 CTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD--MLSKDEK 580
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + N V+ G D D+AY T+ + G+ PD+
Sbjct: 181 EALELLHMMADDRGGGSPP--DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR-GILPDVV 237
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y+++I A K + +A V +V GV P+ M+Y+ ++ + ++ K A+ + +M
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297
Query: 168 VNAGFAPSKET 178
+ G P+ T
Sbjct: 298 RSDGVEPNVVT 308
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +YN LI K EA+++ +VS+GVKP+ ++Y L++ +
Sbjct: 510 IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 569
Query: 160 ALSVIDEMVNAGFAPS 175
AL++ EMV++G +P+
Sbjct: 570 ALALFKEMVSSGVSPN 585
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC +D A + ++ S G+ PDI +Y LI + ++ + +A +F+ +V
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAA 160
S GV PN ++Y++++ R AA
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRTAAA 605
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD H +N LI A+ K +K +A VF + G+ PN + Y ++D + A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ G P+
Sbjct: 431 MLYFEQMIDEGLTPN 445
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V + +I +D+A + + + G+ PD +YN++++ +
Sbjct: 226 EMLDRGILP--DVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 282
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA + + S GV+PN ++YS L++ N A + D M G P
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 342
Query: 178 TLKKV 182
T + +
Sbjct: 343 TYRTL 347
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 91 QTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q EA+G+ S G+ P++ +Y++L+ K ++ EA ++F+ + G++P+ +Y
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + T +++D MV G P
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQP 374
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++F+ +V +GVKP+ ++Y+ L+D A ++ MV
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543
Query: 169 NAGFAP 174
+ G P
Sbjct: 544 SVGVKP 549
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ +V NC+I GC + A Q + S + PD+ ++NALI AF K K EA
Sbjct: 112 FPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIES-NVDPDVVTFNALINAFVKEGKISEAE 170
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
++ ++ + P+ ++Y+ L+D + A + D MV+ G +P+ T+ + C
Sbjct: 171 ELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGC 230
Query: 187 VR 188
R
Sbjct: 231 CR 232
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAA---------INCVILGCANIWDLDRAYQTFEAVG 97
F L + + + +S AE Y+ + N +I G LD A F+ +
Sbjct: 153 FNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMV 212
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G +P++ + N LI + K+ + ++ ++ G+ P+++SY+ L+ D
Sbjct: 213 SKGG-SPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDL 271
Query: 158 KAALSVIDEMVN 169
AA + EM++
Sbjct: 272 NAAQDLFQEMIS 283
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A Q F + F + P S N L++ F KL KT + R F+ ++ G +P +Y+
Sbjct: 208 LEEAIQCFSKM-KRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYN 266
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D D +AA + +EM G P T
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVT 299
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ N +I G ++DRA + + G+ PD+ Y I+ L+K A V
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ G+K N++ Y+ L+DA+ + + L ++DEM
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 568
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD FE + PD+ +YNALI F K K + +
Sbjct: 301 NSMIDGFGKVGRLDDTVCFFEEM-KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN +SYS LVDA + A+ +M G P++ T
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 85 DLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D +R + E G + G+ P++ SYNALI+ F K K A + L G+KP+ +
Sbjct: 449 DAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLL 508
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
Y + + +AA V++EM G
Sbjct: 509 LYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A FE + GL PD +YN++I FGK+ + + FE + + +P+ ++Y
Sbjct: 277 DVEAARGLFEEMKFR-GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 335
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ L++ L EM G P+
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKGNGLKPN 366
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A F + + FGL + + A+I K + A+ +FE +V G+ P+ +Y+ L
Sbjct: 595 KAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSL 654
Query: 148 VDAHLTNRDQKAALSVIDEMVNAG 171
+D + + AL++ D+M G
Sbjct: 655 MDGNFKQGNVLEALALRDKMAEIG 678
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
E Y S+ NC I N+ D R VG + ++ +Y ALI ++
Sbjct: 402 EYTYTSLIDANCKI---GNLSDAFRLGNEMLQVGVEW----NVVTYTALIDGLCDAERMK 454
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
EA +F + + GV PN SY+ L+ + ++ AL +++E+ G P
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ ++Y +LI A K+ +A R+ ++ +GV+ N ++Y+ L+D K A
Sbjct: 397 GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 161 LSVIDEMVNAGFAPS 175
+ +M AG P+
Sbjct: 457 EELFGKMDTAGVIPN 471
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY+ L+ AF K +A + + + +G+ PN +Y+ L+DA+ + A
Sbjct: 362 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA 421
Query: 161 LSVIDEMVNAG 171
+ +EM+ G
Sbjct: 422 FRLGNEMLQVG 432
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+H+YN LI AF + ++ E+ ++F V LG+ P +Y+ ++ + +R+ A
Sbjct: 507 GVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLA 566
Query: 161 LSVIDEMVNAGFAPSKET 178
L + M + G P T
Sbjct: 567 LKFFNRMSDHGCTPDSLT 584
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
C+I G + + ++AY+ + +G G + +I +YNA I + K + EA ++ +
Sbjct: 411 TCLIDGHSKAGNFEKAYELMDLMGKE-GFSANIFTYNAFIDSLCKKGRFLEACKLLKKGF 469
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LG++ + ++Y++L+ D + AL +M AG P T
Sbjct: 470 RLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHT 514
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W ++A++ F + S P++H+Y ++I+ + K K A + + G+ P
Sbjct: 347 CKKGWT-EKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVP 405
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
N +Y+ L+D H + + A ++D M GF+
Sbjct: 406 NTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFS 439
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G GL D +Y LI + T EA F + GV+P+ +Y+ L+ A R
Sbjct: 468 GFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRR 527
Query: 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
+ + + E V G P+KET + + DR +LA KF RM+
Sbjct: 528 MEESEKLFAEAVGLGLVPTKETYTSM-------ICGYCRDRNVSLALKFFNRMS 574
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 125 ASRVFEHL---VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
ASRVF + V LG+KPN ++++ L++ K A +++EMV G+ P+ T
Sbjct: 282 ASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYT 338
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TPD +Y ALI K K EA +++E +V G+ P ++ L + D
Sbjct: 574 SDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDS 633
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRC 186
A+ +++ + + + TL +R+ C
Sbjct: 634 ATAMVILERLDKKLWIRTVNTL--IRKLC 660
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY LI F KL +AS +F+ +V G+ PN + Y++L+ + + + A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEM G P+ T
Sbjct: 682 KELLDEMSVKGLHPNAVT 699
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V + +I G + + ++ +A F+ + GLTP++ YN L+ F + +
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGE 677
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A + + + G+ PNA++Y ++D + + D A + DEM G P
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 182 VRRRCVREMDEE 193
+ C R D E
Sbjct: 738 LVDGCCRLNDVE 749
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI YN+LI K K+ EA +V G+KPNA +Y + ++ + +A
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541
Query: 161 LSVIDEMVNAGFAPSK 176
+ EM G P+K
Sbjct: 542 DKYVKEMRECGVLPNK 557
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P ++Y+ LI K+K+ +A + + SLGV + +YSLL+D L R+ AA
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 161 LSVIDEMVNAGF 172
++ EMV+ G
Sbjct: 332 KGLVHEMVSHGI 343
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+ A + F + ++ L P + +Y +L+ + K+ + E VF+ ++ G++P+ + Y
Sbjct: 820 NLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S++++A L AL ++D+M
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQM 901
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLK-KTFEASRVFEHLVS 134
GC + D++RA F + G +NALI + FGK + KT +R+ +
Sbjct: 741 GCCRLNDVERAITIFGT--NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KPN ++Y++++D + +AA + +M NA P+
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY LI F KL +AS +F+ +V G+ PN + Y++L+ + + + A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEM G P+ T
Sbjct: 682 KELLDEMSVKGLHPNAVT 699
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V + +I G + + ++ +A F+ + GLTP++ YN L+ F + +
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGE 677
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A + + + G+ PNA++Y ++D + + D A + DEM G P
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 182 VRRRCVREMDEE 193
+ C R D E
Sbjct: 738 LVDGCCRLNDVE 749
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI YN+LI K K+ EA +V G+KPNA +Y + ++ + +A
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541
Query: 161 LSVIDEMVNAGFAPSK 176
+ EM G P+K
Sbjct: 542 DKYVKEMRECGVLPNK 557
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P ++Y+ LI K+K+ +A + + SLGV + +YSLL+D L R+ AA
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 161 LSVIDEMVNAGF 172
++ EMV+ G
Sbjct: 332 KGLVHEMVSHGI 343
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+ A + F + ++ L P + +Y +L+ + K+ + E VF+ ++ G++P+ + Y
Sbjct: 820 NLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S++++A L AL ++D+M
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQM 901
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLK-KTFEASRVFEHLVS 134
GC + D++RA F + G +NALI + FGK + KT +R+ +
Sbjct: 741 GCCRLNDVERAITIFGT--NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KPN ++Y++++D + +AA + +M NA P+
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
+GC N+ Y + +G+ P++ +YNAL+YA G+ K+ +A ++ ++S G+
Sbjct: 303 VGCLNV------YNDMKVLGAK----PNLTTYNALLYAMGRAKRARDAKAIYGEMISNGL 352
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
PN +Y+ L+ A+ R + AL+V EM G
Sbjct: 353 SPNWPTYAALLQAYCRARFNRDALNVYKEMKEKG 386
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
CAN+ +D A + FE + SS PD +Y +LI + + K E +F ++ G +P
Sbjct: 401 CANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEP 460
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
N + + LV + + + + +++++ G +P
Sbjct: 461 NIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISP 495
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++++YN+LI GK K EA +++E L++ G KPN +Y+ L+ + + + A
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 1065
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M+ G P+ T
Sbjct: 1066 FAAYGRMIVGGCRPNSST 1083
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + +E + S G+ PD+ + NA++Y K + A RVF L ++G+ P+ ++Y+++
Sbjct: 434 KALKRYELMKSK-GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMM 492
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + A+ + EM+ AP
Sbjct: 493 IKCCSKASNADEAMKIFAEMIENRCAP 519
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M E FSP Y PL+ + G E ++++ ++ EP + A N ++ G
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG-CEP---NCAIYNILLNGYRI 918
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D ++ + FE++ G+ PDI SY +I + + F+ L +G++P+ +
Sbjct: 919 AGDTEKVCELFESMVEQ-GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLI 977
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+Y+LL+ + + ALS+ ++M G AP+
Sbjct: 978 TYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C + G + R+ V G+ + ++YN LIY K EA V++ + +
Sbjct: 140 CTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAA 199
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-------ETLKKVRR--- 184
GV P +YS+L+ A RD + + ++ EM G P+ L + R
Sbjct: 200 DGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEE 259
Query: 185 --RCVREMDEES 194
R +R+M+EE
Sbjct: 260 AYRILRKMEEEG 271
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
++ N +A+ +V + + + +D A F+ + G+ P +SYN+LI
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK-GIIPQQYSYNSLISG 390
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + A +F H+ G PN ++ L ++ H + + AL + M + G P
Sbjct: 391 FLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVP 449
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL PD+ +YN LI+ GK + EA ++ + G+ PN +Y+ L+ +L +
Sbjct: 968 TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI-LYLGKAGK 1026
Query: 158 KA-ALSVIDEMVNAGFAPS 175
A A + +E++ G+ P+
Sbjct: 1027 AAEAGKMYEELLAKGWKPN 1045
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP Y +++ C K +++ E + P V A+N +I +
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP--DVLAMNSLIDMLYKAGRGNE 539
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ F + L P +YN L+ G+ K E ++ E + S PN ++Y+ ++
Sbjct: 540 AWKIFYEL-KEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVL 598
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
D N + AL ++ M G P + V V+E
Sbjct: 599 DCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN +I K K EA ++ L+S G P +Y L+D L + + + A ++ DEM
Sbjct: 838 TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEM 897
Query: 168 VNAGFAPS 175
+ G P+
Sbjct: 898 LECGCEPN 905
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G +L +A + F+ V SS G +PD+ +Y ++I + K K EAS +
Sbjct: 241 IVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLL 300
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++ LG+ P +++++LVD + + A + +M++ G P
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFP 345
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL- 132
N +I G + ++A + + S FG PDI +YN LI F K + +A+ +F+ +
Sbjct: 210 NILIRGLCGVGKAEKAVELLGGM-SGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVK 268
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S G P+ ++Y+ ++ + + A ++D+M+ G P+ T
Sbjct: 269 SSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTF 315
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
SFG PD+ ++ +LI + ++ + + R++E + + G+ PNA +YS+L++A
Sbjct: 340 SFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINA 391
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 87 DRAYQTFEAVG--SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+R + E +G +S + P YN +I F K K EA + E + KP+ +++
Sbjct: 396 NRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITF 455
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
++L+ H A+S+ +MV G +P K T+
Sbjct: 456 TILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V +I G + +++ ++ +E + + G+ P+ +Y+ LI A K + +A
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNAR-GMFPNAFTYSILINALCKENRLLKAR 402
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ L S + P Y+ ++D A+ +++EM P K T
Sbjct: 403 ELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITF 455
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 54 YFQLENLSRAEPPYKSVA---------AINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
YF++ NL A Y+ + + N +I G + + A+ FE + S G+
Sbjct: 412 YFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEM-SHKGILR 470
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
+ +YNAL+ F K K E + + L+ G++P+A SY+ L+D D + A +
Sbjct: 471 NHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILW 530
Query: 165 DEMVNAGFAPS 175
D+M N G P+
Sbjct: 531 DDMQNRGMEPA 541
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C W D FE + F P+ ++YNA+I+ + K+ EA +++ + G
Sbjct: 378 CRMKWLGDARKLWFEMIQKGF--LPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGE 435
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+SY++++ ++ K A + +EM + G + T + R +E
Sbjct: 436 KTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKE 485
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ ++++A F + S G+ P+IHSY+ +I+ F K+KK EA +F+ + + P+ +
Sbjct: 330 VKEVNKAKHIFNTI-SQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+Y+ L+D AL ++DEM + G K T
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKIT 424
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I + ++ A+ + + S G++PD+ +YNALI F + K +A+ +
Sbjct: 211 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK-GISPDVVTYNALISGFCIVGKMKDATDL 269
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-C- 186
F ++ + PN ++++LVD R K A +V+ M+ G P T + R C
Sbjct: 270 FNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCL 329
Query: 187 VREMDE 192
V+E+++
Sbjct: 330 VKEVNK 335
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I +D A F+ + + + PD+ +YN+LI KL K A ++ + +
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCN-NIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 416
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV + ++Y+ ++DA N A++++ +M + G P
Sbjct: 417 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP 455
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN+L+ + +K+ +A +F + GV PN SYS+++ + A
Sbjct: 312 GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEA 371
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ EM P T
Sbjct: 372 MNLFKEMHCNNIIPDVVT 389
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S+ P V N +I G + + A F + + P+++++N L+ F
Sbjct: 237 EMVSKGISP--DVVTYNALISGFCIVGKMKDATDLFNKMIFE-NINPNVYTFNILVDGFC 293
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K ++ EA V ++ G+KP+ +Y+ L+D + ++ A + + + G P+
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIH 353
Query: 178 TLK-KVRRRC-VREMDEESN 195
+ + C ++++DE N
Sbjct: 354 SYSIMIHGFCKIKKVDEAMN 373
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + A Q V + P++ YN +I + K+K EA ++ +VS
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKL-VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 241
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ ++Y+ L+ K A + ++M+ P+ T
Sbjct: 242 GISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYT 284
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A F+ + FG++P+ +YN LI A K A +F + G P+ +YS
Sbjct: 219 LETALSLFKKL-HEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYS 277
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+L+ K AL V+DEM+N G+ P T + R+M+
Sbjct: 278 ILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMN 323
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L AY+ + G PD+ +YN +I F + + +A ++ + G PNA+SY
Sbjct: 323 NLREAYRLLSKM-KVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSY 381
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LV+ A ++EM++ GF P
Sbjct: 382 RTLVNGLCNEGKFDEAKDFVEEMISNGFIP 411
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
RA + F + S G PDI++YNAL+ A+ + A VFE ++ GVK + +SY++L
Sbjct: 259 RAEEIFAEL-QSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNIL 317
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+DA A ++ D M GF P+ ++
Sbjct: 318 IDAFGRAGLISDAQAIYDSMKKVGFKPTMKS 348
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ N +D+ +E++ S PDI + N LI + + A +F L
Sbjct: 385 NSLLGAYGNSGRMDKMESLYESMQGSV-CKPDIITLNTLINVYAQGGYIERAEEIFNSLE 443
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC-VREMDE 192
S G P+ MS++ L+ A+ + + +SV +M+ AG P + T K + C E +
Sbjct: 444 SKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQVK 503
Query: 193 ESNDRVE 199
E D +E
Sbjct: 504 EVTDMIE 510
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCV-----------ILGCANIWDLDRAYQTFEA 95
F L + Y + L RAE + NC +L + W L A F
Sbjct: 139 FNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQL--AEDVFRE 196
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ + G+ P ++++ +I +GK + +A +F+ + P+ +Y+ L++AH
Sbjct: 197 M-QNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREG 255
Query: 156 DQKAALSVIDEMVNAGFAP 174
+ A + E+ + GF P
Sbjct: 256 NCVRAEEIFAELQSVGFVP 274
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
GS F PD+ +N L+ A+G+ K+ EA F + P S+++L+ A+
Sbjct: 94 GSMF--KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151
Query: 157 QKAALSVIDEMVNAGFAPS 175
+ A V+ EM + +P
Sbjct: 152 LERAERVLHEMKESNCSPG 170
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++++YN+LI GK K EA +++E L++ G KPN +Y+ L+ + + + A
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 1065
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M+ G P+ T
Sbjct: 1066 FAAYGRMIVGGCRPNSST 1083
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + +E + S G+ PD+ + NA++Y K + A RVF L ++G+ P+ ++Y+++
Sbjct: 434 KALKRYELMKSK-GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMM 492
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + A+ + EM+ AP
Sbjct: 493 IKCCSKASNADEAMKIFAEMIENRCAP 519
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M E FSP Y PL+ + G E ++++ ++ EP + A N ++ G
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG-CEP---NCAIYNILLNGYRI 918
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D ++ + FE++ G+ PDI SY +I + + F+ L +G++P+ +
Sbjct: 919 AGDTEKVCELFESMVEQ-GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLI 977
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+Y+LL+ + + ALS+ ++M G AP+
Sbjct: 978 TYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C + G + R+ V G+ + ++YN LIY K EA V++ + +
Sbjct: 140 CTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAA 199
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-------ETLKKVRR--- 184
GV P +YS+L+ A RD + + ++ EM G P+ L + R
Sbjct: 200 DGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEE 259
Query: 185 --RCVREMDEES 194
R +R+M+EE
Sbjct: 260 AYRILRKMEEEG 271
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
++ N +A+ +V + + + +D A F+ + G+ P +SYN+LI
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK-GIIPQQYSYNSLISG 390
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + A +F H+ G PN ++ L ++ H + + AL + M + G P
Sbjct: 391 FLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVP 449
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL PD+ +YN LI+ GK + EA ++ + G+ PN +Y+ L+ +L +
Sbjct: 968 TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI-LYLGKAGK 1026
Query: 158 KA-ALSVIDEMVNAGFAPS 175
A A + +E++ G+ P+
Sbjct: 1027 AAEAGKMYEELLAKGWKPN 1045
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
SP Y +++ C K +++ E + P V A+N +I +
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP--DVLAMNSLIDMLYKAGRGNE 539
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ F + L P +YN L+ G+ K E ++ E + S PN ++Y+ ++
Sbjct: 540 AWKIFYEL-KEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVL 598
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
D N + AL ++ M G P + V V+E
Sbjct: 599 DCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN +I K K EA ++ L+S G P +Y L+D L + + + A ++ DEM
Sbjct: 838 TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEM 897
Query: 168 VNAGFAPS 175
+ G P+
Sbjct: 898 LECGCEPN 905
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A + F + S+ G+ PDI +YN +I K + EA F + G P++ SY+
Sbjct: 497 LEVAKELFSKL-SADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYN 555
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+++ L N+D A+ +IDEMV F+ T + + +D ES+D +
Sbjct: 556 VIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML-------LDLESHDEI 601
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSY 109
++V F E + R PP V N ++ G ++ L+ A + F E VG + + PD ++
Sbjct: 254 EAVEFLSEMVDRGIPP--DVVTYNTILHGFCSLGQLNEATRLFKEMVGRN--VMPDTVTF 309
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N L+ K EA V E + G +PNA +Y+ L+D + + A+ V+ M+
Sbjct: 310 NILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIG 369
Query: 170 AGFAPS 175
G AP+
Sbjct: 370 KGCAPN 375
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN +++ F L + EA+R+F+ +V V P+ +++++LVD A
Sbjct: 266 GIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEA 325
Query: 161 LSVIDEMVNAGFAPSKET 178
V + M G P+ T
Sbjct: 326 RCVSETMTEKGAEPNAYT 343
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G N + A F + S G P++ SYN +I K T A RVF +
Sbjct: 170 NTLINGLCNEGKIKEAVGLFNEMVWS-GHEPNVISYNTVINGLCKNGNTIMAVRVFRKME 228
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KPN ++Y+ ++D+ +R A+ + EMV+ G P
Sbjct: 229 QNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+T +++S N LI +L A V + LG++P+A++++ L++ K
Sbjct: 125 FGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKE 184
Query: 160 ALSVIDEMVNAGFAPS 175
A+ + +EMV +G P+
Sbjct: 185 AVGLFNEMVWSGHEPN 200
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ SYN LI + K K+ EA R+ + + P+ ++YS L+ + A
Sbjct: 371 GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430
Query: 161 LSVIDEMVNAGFAP 174
L++ EM ++G P
Sbjct: 431 LNLFKEMCSSGLLP 444
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +Y+ L+ ++ + EA +F+ + S G+ P+ M+YS+L+D + AL
Sbjct: 407 LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEAL 466
Query: 162 SVIDEM 167
++ EM
Sbjct: 467 KLLKEM 472
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ ++YNAL+ + + EA +V ++ G PN SY++L++ + ++ A
Sbjct: 336 GAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEA 395
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM P T
Sbjct: 396 KRLLSEMSEKNLTPDTVT 413
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PD ++N LI K EA +F +V G +PN +SY+ +++ N +
Sbjct: 160 LGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIM 219
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
A+ V +M P+ T + + D N+ VE L++ D
Sbjct: 220 AVRVFRKMEQNRGKPNVVTYNTIIDSLCK--DRLVNEAVEFLSEMVD 264
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 3 DLQRAFITLNEFETAYGDSIID--MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLE 58
+L R +FE AY SII M + F P TS Y V+ C+ +D+ + E
Sbjct: 450 NLARCLCGAGKFEKAY--SIIREMMSKGFIPDTSTYSKVIGLLCNA---SKVDNAFLLFE 504
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
+ ++ V +I + L +A + F+ + G P++ +Y ALI+A+ K
Sbjct: 505 EM-KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLK 562
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+K A+ +FE ++S G PN ++Y+ L+D H + + A + M
Sbjct: 563 ARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARM 611
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 86 LDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
L +A++ EA V S G P+ Y+ALI F K+ K EA VF + G PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+YS L+D ++ AL V+ M+ AP+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P Y LV+ K D+ + + +++ PP + N +I G LD A
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPP--DIFTYNTLIDGYCKQLKLDSAT 455
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ + S G+TPD+ +YN L+ K K+ E +F+ + G PN ++Y+++VD+
Sbjct: 456 EMVNRMWSQ-GMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDS 514
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
+ A+ ++ EM + G P
Sbjct: 515 LCKAKKVNEAVDLLGEMKSKGLKP 538
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
V+ G + + D A + F+ + + L PD+ ++N L++ K FE+ R+ ++
Sbjct: 187 VVAGLYDSGEHDHARELFDEMLARC-LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKR 245
Query: 136 GVKPNAMSYSLLV---------DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRR 185
GV PN ++++ V D + N A + +MVN GF P T +
Sbjct: 246 GVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGY 305
Query: 186 CVREMDEESN 195
C + M +++N
Sbjct: 306 CKKGMVQDAN 315
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN++I + K +A+RV + V G KP+ +Y L++ + D A
Sbjct: 290 GFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRA 349
Query: 161 LSVIDEMVNAGFAPS 175
++V + + G PS
Sbjct: 350 MAVFKDGLGKGLRPS 364
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 3/180 (1%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E+ +P Y ++V K + ++V E S+ P V + + G I D
Sbjct: 498 EKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKP--DVVSFGTLFTGFCKIGD 555
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D AYQ F + + + +YN ++ AF + A ++F + + G P+ +Y
Sbjct: 556 IDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYR 615
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-RCVREMDEESNDRVEALAKK 204
+++D + + E + F PS T +V CV++ E+ + + +K
Sbjct: 616 VVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQK 675
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+I +YN +I K+ +AS + + ++ G P+ +Y+ L+D + +A
Sbjct: 395 GCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSA 454
Query: 161 LSVIDEMVNAGFAP 174
+++ M + G P
Sbjct: 455 TEMVNRMWSQGMTP 468
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+++Y I +F K + + A R+ ++ LG NA++Y +V + + A
Sbjct: 141 GVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHA 200
Query: 161 LSVIDEMVNAGFAP 174
+ DEM+ P
Sbjct: 201 RELFDEMLARCLCP 214
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN LI + K K A+ + + S G+ P+ ++Y+ L++ +
Sbjct: 430 GCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEV 489
Query: 161 LSVIDEMVNAGFAPS 175
+ + M G P+
Sbjct: 490 MEIFKAMEEKGCTPN 504
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FGL P Y +LI +F K K A R+++ + G +PN Y+++V++H + +
Sbjct: 383 FGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLET 442
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNI 217
A+SV +M AGF P+ T C+ EM S +V++ K ++ N R +
Sbjct: 443 AMSVFSDMEKAGFLPTPSTYS-----CLLEMHSASG-QVDSAMKLYNSMTNAGLRPGL 494
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 67 YKSVAAINCVILGC---------ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
Y+S+ A C++ G A LD A++ F+ + L P + +L+ + G
Sbjct: 307 YESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK-NLRPSFLVFASLVDSMG 365
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + + +V+ + G++P+A Y L+++ + + AL + DEM AGF P+
Sbjct: 366 KAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPN 423
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ Y ++ + K K A VF + G P +YS L++ H + +A
Sbjct: 419 GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSA 478
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + + M NAG P T
Sbjct: 479 MKLYNSMTNAGLRPGLST 496
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
+ F+ + S++ ++ S SV A N V+ A L+ A+ F+ V S G
Sbjct: 224 RDFDAIQSLFDEMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDS-GCKI 282
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D +YN+LI F ++A V+E + + G + +Y L++ + + AA +
Sbjct: 283 DTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLF 342
Query: 165 DEMVNAGFAPS 175
EM PS
Sbjct: 343 QEMKEKNLRPS 353
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +YN LI F + K A VF H++ + P+ +Y+ ++D + NR AL
Sbjct: 326 LTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKAL 385
Query: 162 SVIDEMVNAGFAPSKET 178
S++ EM G PS+ T
Sbjct: 386 SILSEMQITGVMPSELT 402
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++LG LD A E + + L PDIH+Y L+ F + K A + + ++
Sbjct: 649 NALLLGICRYGTLDEALDLCEKMIKNNCL-PDIHTYTILLSGFCRKGKILPALVILQMML 707
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
GV P+ ++Y+ L++ + KAA V E++
Sbjct: 708 EKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEII 742
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P IH NAL++AF + EA +++ + + +++S++ ++D++ + A SV
Sbjct: 540 PVIH--NALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSV 597
Query: 164 IDEMVNAGFAPSKETLKKVRR 184
D+MV G++P+ T + + R
Sbjct: 598 YDDMVRYGYSPNVCTYQNLLR 618
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C++ G N + A F + GL D +YN+L+ + K + R+
Sbjct: 716 VAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMS 775
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ V PN+ SY++L+ ++ +L + MV G P T +
Sbjct: 776 DMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYR 825
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 52 SVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
++Y + SR K++ I +I G + ++ +A Q +++ G+ PD+ +Y+A
Sbjct: 419 AIYLMEDLKSRGITINKTMRTI--LIDGFCQVGEISKAKQILKSMFED-GIDPDVITYSA 475
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
LI ++ K E + + G+ PN + Y+ L+
Sbjct: 476 LINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLI 512
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTFEAVG 97
F TL Y + ++L RA S+ C +I G D+D+ + E +
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKM- 289
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
S G PD+ +Y L+ K K EA R+ + ++ G PNA++YSL+ D
Sbjct: 290 VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDG 342
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLEN 59
G++ RA+ L E + G SP T Y +++ C D + L+
Sbjct: 170 GEIDRAYGFLEEMKQRAG---------CSPDTFTYSILINGLCKSSNLRKADEL---LQE 217
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ + SV A N ++ G DLDRA + ++ G PD+ +Y+ +I +
Sbjct: 218 MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM-LEHGCAPDVVTYSTIIDGLCRC 276
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + E +VS G KP+ ++Y++LV A ++ M+ G P+ T
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVT 335
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++DRAY E + G +PD +Y+ LI K +A + + ++
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
Query: 134 SL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++++ LVD + +D A ++ M+ G AP
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P YN ++A K K EA V +++ KP+ ++++ L+ A
Sbjct: 49 GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 161 LSVIDEMVNAGFA 173
V+DEM +GFA
Sbjct: 109 QQVLDEMERSGFA 121
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
RK +E LD + +A+ +V ++ + + A Q E + S G
Sbjct: 267 RKVYELLDDM--------QAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERM-RSVGCK 317
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFE-HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
PD YNALI+ G+ + EA RVFE + GV PN +Y+ ++ + ++ AL+
Sbjct: 318 PDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALN 377
Query: 163 VIDEMVNAGFA-PSKETLKKVRRRCVR--EMDEESN 195
++ E+ N+ F P +T V + C + ++D SN
Sbjct: 378 LLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSN 413
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++P+ H++N I+ + K + EA + + G +P +SYS ++ ++ + +
Sbjct: 211 ISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVY 270
Query: 162 SVIDEMVNAGFAPS 175
++D+M G AP+
Sbjct: 271 ELLDDMQAQGCAPN 284
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F+ + G+TPD+++Y LI +F K +A +FE + S+G P ++Y+
Sbjct: 473 VEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 531
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A+L + A + MV+AG P+ T
Sbjct: 532 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 564
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A FE + S G +P + +Y ALI+A+ K K+ +A+ +F +V G +PN ++Y
Sbjct: 508 IEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 566
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
LVD + A V +++
Sbjct: 567 ALVDGLCKAGNISKAFEVYAKLIG 590
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YF E+ P +V ++ G +D A++ +A+ SS G P+ Y+ALI
Sbjct: 600 YFPCEDRHTLAP---NVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALI 655
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
F K K A VF + G P+ +Y+ L+D + A+ V+ +M+
Sbjct: 656 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 715
Query: 174 PSKET 178
P+ T
Sbjct: 716 PNVVT 720
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + F + + G P +H+Y +LI K + A +V ++ PN ++Y+
Sbjct: 664 IDSAQEVFLQM-TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 722
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D + + AL ++ M G +P+ T
Sbjct: 723 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 755
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN+LI K + EA +F+ L G+ P+A++Y+ L+ H A
Sbjct: 254 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 313
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
++ V++GF P++ T + ++E D+E
Sbjct: 314 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G PDI ++N+LI+ K+ K EA +++ ++ GV N ++Y+ L+ A L
Sbjct: 111 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 170
Query: 158 KAALSVIDEMVNAG 171
+ AL ++++M+ G
Sbjct: 171 QEALKLVNDMLFRG 184
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI +YN LI K A + + G +PN ++Y++L+D +
Sbjct: 7 SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66
Query: 159 AALSVIDEMVNAGFA 173
A +V+DEM G A
Sbjct: 67 EARNVLDEMSGKGLA 81
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D +YN LI A + + +FE ++S G+ PN +S ++L++ + + A
Sbjct: 184 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 243
Query: 161 LSVIDEMVNAGFAP 174
L + +M++ G P
Sbjct: 244 LEFLRDMIHRGLTP 257
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y LI F K + EA V + + G+ NA+ Y+ L+ A + + A
Sbjct: 44 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 103
Query: 161 LSVIDEMVNAGFAP 174
L++ +M + G P
Sbjct: 104 LNMFGDMSSKGCKP 117
>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
Length = 572
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S + C +D+ R Y + G TP++ YNA+IY K + EA +
Sbjct: 314 SYTTVICCFSKAGKFYDVVRLYDEMKKKG----FTPNLKVYNAVIYVLSKERCVKEALNL 369
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F + +G PNA++Y+ L+ + A S +D+M+ GF P+
Sbjct: 370 FNKIREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPT 416
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 72 AINCVILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+ N ++ G NI+ D+ + + +E + S+ +TPD SY +I F K K ++ R+++
Sbjct: 278 SFNVILYGWCNIFVDVYQVKRLWEEM-SNLCITPDAFSYTTVICCFSKAGKFYDVVRLYD 336
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G PN Y+ ++ R K AL++ +++ GF P+ T
Sbjct: 337 EMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGFHPNAVT 384
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+ INC+ D+D A+ F+ + GL PD+ +Y+ L+ FGK ++ A +FE
Sbjct: 517 SLINCL----GKNGDVDEAHVRFKEMQEK-GLNPDVVTYSTLMECFGKTERVEMAYSLFE 571
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
++ G +PN ++Y++L+D N A+ + +M G P T + R
Sbjct: 572 EMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLER 625
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V + + + FE + G +PDI +YN LI +FG++ + EA +FE L
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKD-GPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KP+ +SY+ L++ N D A EM G P
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNP 545
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I + R + EAVG + GLT ++ YN L+ K K +A +VF +V G
Sbjct: 277 IRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGC 336
Query: 138 KPNAMSYSLLVD 149
+PN +YSLL++
Sbjct: 337 RPNEYTYSLLLN 348
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTFEAVG 97
F TL Y + ++L RA S+ C +I G D+D+ + E +
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKM- 289
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
S G PD+ +Y L+ K K EA R+ + ++ G PNA++YSL+ D
Sbjct: 290 VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDG 342
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLEN 59
G++ RA+ L E + G SP T Y +++ C D + L+
Sbjct: 170 GEIDRAYGFLEEMKQRAG---------CSPDTFTYSILINGLCKSSNLRKADEL---LQE 217
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
+ + SV A N ++ G DLDRA + ++ G PD+ +Y+ +I +
Sbjct: 218 MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM-LEHGCAPDVVTYSTIIDGLCRC 276
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + E +VS G KP+ ++Y++LV A ++ M+ G P+ T
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVT 335
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++DRAY E + G +PD +Y+ LI K +A + + ++
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
Query: 134 SL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++++ LVD + +D A ++ M+ G AP
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P YN ++A K K EA V +++ KP+ ++++ L+ A
Sbjct: 49 GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 161 LSVIDEMVNAGFA 173
V+DEM +GFA
Sbjct: 109 QQVLDEMERSGFA 121
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 46/77 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ PD+ +Y++L+Y + + EA ++F+ +++ G KP+A SY++L+ + +
Sbjct: 332 TEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRI 391
Query: 158 KAALSVIDEMVNAGFAP 174
A + +EM++ G P
Sbjct: 392 DEAKQLFNEMIHQGLTP 408
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
++PDI +YN+LI ++ EAS + + SL + PN ++++LVDA A
Sbjct: 266 ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQ 325
Query: 162 SVIDEMVNAGFAP 174
V M G P
Sbjct: 326 GVFKTMTEMGVEP 338
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S + P+I ++N L+ A K K EA VF+ + +GV+P+ ++YS L+ + +
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEI 356
Query: 158 KAALSVIDEMVNAGFAP 174
A + D M+ G P
Sbjct: 357 VEARKLFDAMITKGCKP 373
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +D A Q F + GLTPD +YN LI+ +L + EA +F+++
Sbjct: 379 NILIKGYCKAKRIDEAKQLFNEMIHQ-GLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437
Query: 134 SLGVKPNAMSYSLLVDA 150
S G P+ +YS+L+D
Sbjct: 438 SNGNLPDLFTYSMLLDG 454
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + +A + F+ +S G P +++Y +I K+ +T A+ +F+ +
Sbjct: 169 NTLINGLCKVGKFAQAVEFFDDFEAS-GCQPTVYTYTTIINGLCKIGETTAAAGLFKKME 227
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PN ++Y++L+D+ ++ AL + M +P
Sbjct: 228 EAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISP 268
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PDI++ + LI F L++ A VF ++ LG++P+A++++ L++ A
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ D+ +G P+ T +
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTI 206
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + L A F+ + S+ G PD+ +Y+ L+ F K +A R+F +
Sbjct: 414 NTLIHGLCQLGRLREAQDLFKNMHSN-GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQ 472
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE--MD 191
S +KP+ Y++L+DA + K A + E+ G P+ + + +E +D
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532
Query: 192 E 192
E
Sbjct: 533 E 533
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F+A+ + G PD SYN LI + K K+ EA ++F ++ G+ P+ ++Y+ L+
Sbjct: 359 ARKLFDAMITK-GCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417
Query: 149 DA 150
Sbjct: 418 HG 419
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ Y +I K EA F ++ G P+ SY++++ L +D+ A
Sbjct: 510 GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRA 569
Query: 161 LSVIDEMVNAGFAPSKET 178
+I EM + GF T
Sbjct: 570 AQLIGEMRDRGFVAEAGT 587
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINC---------VILG 79
FS F+ + L + F TL + ++ ++A + A C +I G
Sbjct: 150 FSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIING 209
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
I + A F+ + + G P++ +YN LI + K K EA +F ++ + + P
Sbjct: 210 LCKIGETTAAAGLFKKMEEA-GCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISP 268
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ +Y+ L+ R K A ++++EM + P+
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + N V+ G D D+AY T+ + G+ PD+
Sbjct: 181 EALELLHMMADDRGGGSPP--DVVSYNTVLNGFFKEGDSDKAYSTYHEM-LDRGILPDVV 237
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y+++I A K + +A V +V GV P+ M+Y+ ++ + ++ K A+ + +M
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297
Query: 168 VNAGFAPSKET 178
+ G P+ T
Sbjct: 298 RSDGVEPNVVT 308
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +YN LI K EA+++ +VS+GVKP+ ++Y L++ +
Sbjct: 510 IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 569
Query: 160 ALSVIDEMVNAGFAPS 175
AL++ EMV++G +P+
Sbjct: 570 ALALFKEMVSSGVSPN 585
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC +D A + ++ S G+ PDI +Y LI + ++ + +A +F+ +V
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAA 160
S GV PN ++Y++++ R AA
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRTAAA 605
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD H +N LI A+ K +K +A VF + G+ PN + Y ++D + A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ G P+
Sbjct: 431 MLYFEQMIDEGLTPN 445
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V + +I +D+A + + + G+ PD +YN++++ +
Sbjct: 226 EMLDRGILP--DVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 282
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA + + S GV+PN ++YS L++ N A + D M G P
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA 342
Query: 178 TLKKV 182
T + +
Sbjct: 343 TYRTL 347
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 91 QTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q EA+G+ S G+ P++ +Y++L+ K ++ EA ++F+ + G++P+ +Y
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + T +++D MV G P
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQP 374
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++F+ +V +GVKP+ ++Y+ L+D A ++ MV
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543
Query: 169 NAGFAP 174
+ G P
Sbjct: 544 SVGVKP 549
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A N VI +D AY F+ + + G PD +YN L++ + EA R+
Sbjct: 179 STAIYNAVIAASVRAGAVDAAYLRFQQMPAD-GCRPDCFTYNTLVHGVCRRGIVDEALRL 237
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + G++PN ++Y++LVD + A+ V++ M G + ++ T + + R
Sbjct: 238 VKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFR 297
Query: 189 EMDEESNDRV 198
+++E R+
Sbjct: 298 CLEKERAYRM 307
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD +S+NA I +F +++K +A ++F + GV P++ +Y+ L+ A R A
Sbjct: 560 GITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEA 619
Query: 161 LSVIDEM 167
+I M
Sbjct: 620 KEIILAM 626
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL + Y +L N+ A+ K V +I G + LD A+ F +
Sbjct: 463 FNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEM- 521
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S +G+ P++ +YN LI+ +A + + G+ P+A S++ + + R
Sbjct: 522 SEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKI 581
Query: 158 KAALSVIDEMVNAGFAPSKET 178
+ A + ++M G +P T
Sbjct: 582 EKAQKLFNDMSRYGVSPDSYT 602
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + SS G PD+ +YN +I FGK K EA + + + GV PN SY
Sbjct: 2 DYSKAISIFSRLKSS-GYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFSEM 83
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 121 MGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 181 ANNLIQEMQSRGIEPNSIT 199
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALAWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G +PD+ +YNA+I FGK K EA + + + GV PN +SY
Sbjct: 59 DYSKAISIFSRLKRS-GFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ AL+V EM
Sbjct: 118 STLLTMYVENKKFLEALTVFAEM 140
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 27 EIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E SP Y V+ AC+R +E L ++ ++ R E + N ++ CA
Sbjct: 212 ERVSPNILTYNTVINACARGDLDWEGLLGLFAEM----RHEGVQPDLVTYNTLLSACAAR 267
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D A F+ + G+ P+I +Y+ ++ FGKL K + + + + + S G P+ S
Sbjct: 268 GLGDEAEMVFKTMIEG-GIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISS 326
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y++L++AH K A+ V +M AG P+ T
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
S G PDI SYN LI A KL EA VF+ + + G PNA +YS+L++ +
Sbjct: 317 SEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLY 369
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + S +F+ + S GV + SY
Sbjct: 127 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSY 186
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-EMDEES 194
+ L++A+ N + +L +++ M +P+ T V C R ++D E
Sbjct: 187 TALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEG 237
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 38 LVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR-AYQTFEA 95
LV AC + G E + F + N P K+ + + G A ++D A+ T
Sbjct: 435 LVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGL-IEAYGQAALYDEALVAFNTMNE 492
Query: 96 VGSSFGLTPDIHSYNALIYAF--GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
VGS I +YN+LI+ F G L K FEA + + G+ NA S+S +++ +
Sbjct: 493 VGSK----STIDTYNSLIHTFARGGLYKEFEA--ILSRMREYGISRNAKSFSGIIEGYRQ 546
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ + A+ EM ++TL+ V
Sbjct: 547 SGQYEEAIKAFVEMEKMRCELDEQTLEGV 575
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C E ++ ++E L + +V NC+I G LD A++ E + G
Sbjct: 254 CKGGKMENAIELFMKMEKLGISP----NVVTYNCIINGLCQNGRLDNAFELKEKMTVK-G 308
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ +Y ALI KL + + V + ++ G PN + ++ L+D + + + AL
Sbjct: 309 VQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGAL 368
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR-CVREMDEESNDRVEAL 201
+ D M++ P+ TL + + C + E + + +E +
Sbjct: 369 KIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEI 409
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G N+ LD A + ++ +S GL +IH+Y ++ + K + + +F L+
Sbjct: 562 NFLLRGLCNVGKLDDAIKLWDEFKAS-GLISNIHTYGIMMEGYCKANRIEDVENLFNELL 620
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S ++ N++ Y++++ AH N + AAL +++ M + G P+ T
Sbjct: 621 SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT 665
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LEN+ +++ + A + +I G NI ++ A + + G P++ Y ALI +
Sbjct: 651 LENM-KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE-GFVPNVVCYTALIGGY 708
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KL + A + ++S + PN +Y++++D + + + A +++ +M +G P
Sbjct: 709 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 766
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
FGL P Y +LI +F K K A R+++ + G +PN Y+++V++H + +
Sbjct: 295 GFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLE 354
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNI 217
A+SV +M AGF P+ T C+ EM S +V++ K ++ N R +
Sbjct: 355 TAMSVFSDMEKAGFLPTPSTYS-----CLLEMHSASG-QVDSAMKLYNSMTNAGLRPGL 407
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 67 YKSVAAINCVILGC---------ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
Y+S+ A C++ G A LD A++ F+ + L P + +L+ + G
Sbjct: 220 YESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK-NLRPSFLVFASLVDSMG 278
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + + +V+ + G++P+A Y L+++ + + AL + DEM AGF P+
Sbjct: 279 KAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPN 336
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ Y ++ + K K A VF + G P +YS L++ H + +A
Sbjct: 332 GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSA 391
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + + M NAG P T
Sbjct: 392 MKLYNSMTNAGLRPGLST 409
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV A N V+ A L+ A+ F+ V S G D +YN+LI F ++A V
Sbjct: 161 SVIACNQVVRDLAKAEKLEVAFCCFKKVQDS-GCKIDTATYNSLITLFLNKGLPYKAFEV 219
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+E + + G + +Y L++ + + AA + EM PS
Sbjct: 220 YESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPS 266
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 34 SLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQT 92
S P++V+ ++G ++SVY ++ +V + VI G + +A
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV----NVVTFDVVINGLCKVGKFQKAGDV 251
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
E + ++G +P + +YN +I + K K F+A + + +V+ + PN +++++L+D
Sbjct: 252 VEDM-KAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC 310
Query: 153 TNRDQKAALSVIDEMVNAGFAPS 175
+ + AA V +EM G P+
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPN 333
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 21/160 (13%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + LD A + + S GL P++ +YNALI F K K EA +
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLKEAREM 391
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-------- 180
+ + G+ PN ++++ L+DA+ A + M++ G P+ T
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCR 451
Query: 181 ----KVRRRCVREMDEES--------NDRVEALAKKFDIR 208
K R+ +EM+ N V+AL KK + R
Sbjct: 452 EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 7 AFITLNEFETAYGDSIIDMEEI-FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
+ +F+ A GD + DM+ FSP Y ++ K + + E +++
Sbjct: 238 GLCKVGKFQKA-GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N +I G ++ A + FE + GL P++ +YN+LI K EA
Sbjct: 297 PNE--ITFNILIDGFCRDENVTAAKKVFEEMQRQ-GLQPNVVTYNSLINGLCSNGKLDEA 353
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + +G+KPN ++Y+ L++ + K A ++D++ G AP+
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ ++N LI F + + A +VFE + G++PN ++Y+ L++ +N AL
Sbjct: 295 IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ D+M G P+ T + C ++M +E+ + ++ + K+
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN LI F + EA ++ + + G+K + ++Y++LVDA + + A
Sbjct: 434 GVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKA 493
Query: 161 LSVIDEM 167
+ ++DEM
Sbjct: 494 VRLLDEM 500
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 27 EIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E SP Y V+ AC+R +E L ++ ++ R E + N ++ CA
Sbjct: 212 ERVSPNILTYNTVINACARGDLDWEGLLGLFAEM----RHEGVQPDLVTYNTLLSACAAR 267
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D A F+ + G+ P+I +Y+ ++ FGKL K + + + + + S G P+ S
Sbjct: 268 GLGDEAEMVFKTMIEG-GIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISS 326
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y++L++AH K A+ V +M AG P+ T
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
S G PDI SYN LI A KL EA VF+ + + G PNA +YS+L++ +
Sbjct: 317 SEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLY 369
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + S +F+ + S GV + SY
Sbjct: 127 DWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSY 186
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-EMDEES 194
+ L++A+ N + +L +++ M +P+ T V C R ++D E
Sbjct: 187 TALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEG 237
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 38 LVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR-AYQTFEA 95
LV AC + G E + F + N P K+ + + G A ++D A+ T
Sbjct: 435 LVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGL-IEAYGQAALYDEALVAFNTMNE 492
Query: 96 VGSSFGLTPDIHSYNALIYAF--GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
VGS I +YN+LI+ F G L K FEA + + G+ NA S+S +++ +
Sbjct: 493 VGSK----STIDTYNSLIHTFARGGLYKEFEA--ILSRMREYGISRNAKSFSGIIEGYRQ 546
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ + A+ EM ++TL+ V
Sbjct: 547 SGQYEEAIKAFVEMEKMRCELDEQTLEGV 575
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G + L+ F + G PDI +YN LI + K +K A F
Sbjct: 265 VVTYNSLIDGYGKVGSLEEVASLFNEM-KDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 323
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G+KPN ++YS L+DA + A+ ++ +M G P++ T
Sbjct: 324 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFT 372
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ RA++ F + ++ GL P++ +Y+ LI AF K A ++ + G+ PN +Y+
Sbjct: 316 MPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYT 374
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
L+DA+ + A ++++M+ AG
Sbjct: 375 SLIDANCKAGNLTEAWKLLNDMLQAG 400
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ +I +Y AL+ K + EA VF ++ G+ PN Y+ LV ++ + A
Sbjct: 400 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 459
Query: 161 LSVIDEMVNAGFAP 174
+ ++ +M P
Sbjct: 460 MKILKQMTECNIKP 473
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 40/73 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ Y AL++ + K ++ +A ++ + + +KP+ + Y ++ H + R +
Sbjct: 435 GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEET 494
Query: 161 LSVIDEMVNAGFA 173
+++EM + G +
Sbjct: 495 KLILEEMKSRGIS 507
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +YN +I K + R+F + +G+ P+ ++Y+ L+D + +
Sbjct: 225 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 284
Query: 161 LSVIDEMVNAGFAP 174
S+ +EM + G P
Sbjct: 285 ASLFNEMKDVGCVP 298
>gi|410109907|gb|AFV61033.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
trifolia]
Length = 250
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI F K K +A+ +
Sbjct: 156 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGFCKESKMDDANEL 214
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
F+ ++ G+ PN ++++ L+D H N A+ +
Sbjct: 215 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 249
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 137 DIRLAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 195
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
S+L++ A + DEM+ G P+ T
Sbjct: 196 SVLINGFCKESKMDDANELFDEMLVKGLVPNGVTF 230
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 3 DLQRAFITLNEFETAYGDSIID--MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLE 58
+L R +FE AY SII M + F P TS Y V+ C+ +D+ + E
Sbjct: 450 NLARCLCGAGKFEKAY--SIIREMMSKGFIPDTSTYSKVIGLLCNA---SKVDNAFLLFE 504
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
+ ++ V +I + L +A + F+ + G P++ +Y ALI+A+ K
Sbjct: 505 EM-KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLK 562
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+K A+ +FE ++S G PN ++Y+ L+D H + + A + M
Sbjct: 563 ARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARM 611
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 86 LDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
L +A++ EA V S G P+ Y+ALI F K+ K EA VF + G PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+YS L+D ++ AL V+ M+ AP+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A G L+PD +Y+ +I GK A ++F +V G PN ++Y++++
Sbjct: 473 YQRMQAAG----LSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIA 528
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
R+ ++AL + +M +AGF P K T
Sbjct: 529 LQAKARNYQSALKLYRDMQSAGFQPDKVT 557
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI+++G+ +A VF + +G +P+ ++Y L+D H A
Sbjct: 410 GCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFA 469
Query: 161 LSVIDEMVNAGFAP 174
L + M AG +P
Sbjct: 470 LEMYQRMQAAGLSP 483
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++ + ++ GL P++ + N+L+ AF ++ K +A + + ++ LG+ P+ +Y
Sbjct: 605 NVEKAWQWYQTMLNT-GLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTY 663
Query: 145 SLLV 148
+LL+
Sbjct: 664 TLLL 667
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDA 434
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V +EM G P + T
Sbjct: 435 VDVFNEMQRVGCEPDRVT 452
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F+ + G+TPD+++Y LI +F K +A +FE + S+G P ++Y+
Sbjct: 239 VEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 297
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A+L + A + MV+AG P+ T
Sbjct: 298 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 330
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A FE + S G +P + +Y ALI+A+ K K+ +A+ +F +V G +PN ++Y
Sbjct: 274 IEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 332
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
LVD + A V +++
Sbjct: 333 ALVDGLCKAGNISKAFEVYAKLIG 356
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YF E+ P +V ++ G +D A++ +A+ SS G P+ Y+ALI
Sbjct: 366 YFPCEDRHTLAP---NVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALI 421
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
F K K A VF + G P+ +Y+ L+D + A+ V+ +M+
Sbjct: 422 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 481
Query: 174 PSKET 178
P+ T
Sbjct: 482 PNVVT 486
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P++ +Y AL+ K K A + + ++S G +PN + Y L+D +A
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR 185
V +M G+ PS T + R
Sbjct: 435 EVFLQMTKCGYLPSVHTYTSLIDR 458
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + F + + G P +H+Y +LI K + A +V ++ PN ++Y+
Sbjct: 430 IDSAQEVFLQM-TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 488
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D + + AL ++ M G +P+ T
Sbjct: 489 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 521
>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Vitis vinifera]
Length = 848
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 50 LDSVYFQLENLSRA------EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
L SV Q+EN A E ++ + N +I A+ A+ F + + G
Sbjct: 348 LYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKN-GFH 406
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ SY +L+ A+GK K +A +VFE + KPN +SY+ L+DA+ + A+ +
Sbjct: 407 PDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEI 466
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ EM G P+ ++ + C R + V + A+ I++NT
Sbjct: 467 LHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNT 514
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N VI + +A F ++ PD+ ++ +
Sbjct: 289 YFELMKGTNIRP---DTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + F +++ G+KPN +SY+ L+ A+ ++ K A SV +E+ GF
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF 405
Query: 173 AP 174
P
Sbjct: 406 HP 407
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YNALI A G+ + A + + ++ + P+ +Y+ L++A ++ + K AL+V
Sbjct: 195 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 254
Query: 164 IDEMVNAGFAP 174
+M G P
Sbjct: 255 CKKMTENGVGP 265
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
I L+ + Q F + + YN +I + +A +F + KP+A
Sbjct: 139 IGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAE 198
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+Y+ L++AH + A++++D+M+ A PS+ T + C
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINAC 242
>gi|255554937|ref|XP_002518506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542351|gb|EEF43893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ E + +G+ P + +YN I + KLKK+ EA + + ++S +KPN+++Y+ L+
Sbjct: 231 KVLEMMKDKYGIRPGVSTYNIRIQSLCKLKKSAEAKALLDGMLSRQMKPNSVTYAHLIHG 290
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
D + + +MVN G+ P
Sbjct: 291 FCNEGDLEGGKRLFKDMVNRGYQP 314
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C E ++ ++E L + +V NC+I G LD A++ E + + G
Sbjct: 231 CKGGKMENAIELFMKMEKLGISP----NVVTYNCIINGLCQNGRLDNAFELKEKM-TVKG 285
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ +Y ALI KL + + + + ++ G PN + ++ L+D + + + AL
Sbjct: 286 VQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGAL 345
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR-CVREMDEESNDRVEAL 201
+ D M++ P+ TL + + C + E + + +E +
Sbjct: 346 KIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEI 386
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G N+ LD A + ++ +S GL +IH+Y ++ + K + + +F L+
Sbjct: 539 NFLLRGLCNVGKLDDAIKLWDEFKAS-GLISNIHTYGIMMEGYCKANRIEDVENLFNELL 597
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S ++ N++ Y++++ AH N + AAL +++ M + G P+ T
Sbjct: 598 SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT 642
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LEN+ +++ + A + +I G NI ++ A + + G P++ Y ALI +
Sbjct: 628 LENM-KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE-GFVPNVVCYTALIGGY 685
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KL + A + ++S + PN +Y++++D + + + A +++ +M +G P
Sbjct: 686 CKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 743
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 43 SRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+RKG F +L + F L +L +A + ++ + F + S G
Sbjct: 178 ARKGTFPSLKTCNFXLSSLVKAN--------------------EFEKCCEVFRVM--SEG 215
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PD+ S+ +I A K K A +F + LG+ PN ++Y+ +++ N A
Sbjct: 216 ACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAF 275
Query: 162 SVIDEMVNAGFAPSKET 178
+ ++M G P+ +T
Sbjct: 276 ELKEKMTVKGVQPNLKT 292
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P +V N ++ G DL+ A + + G+ PD+++Y A I
Sbjct: 139 EMLRRGVQP--TVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLC 195
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
K + +A +FE + G+ PN + + L+DAH D A L + EM G
Sbjct: 196 KTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG 249
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC +LD A + + + S G+ D +Y ALI K ++ +A R+ ++
Sbjct: 295 LIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEA 353
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G++P+ +Y++++DA N D K + EM N G P
Sbjct: 354 GLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPG 393
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G+ D+ +YNAL+ F +++ A+ + E + G+KP+ ++Y+ L+D +
Sbjct: 246 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGEL 305
Query: 158 KAALSVIDEMVNAGFA 173
A+ + EM + G A
Sbjct: 306 DTAMEMKQEMSDEGVA 321
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G P I +YN ++ F L + A + ++++GV PN ++Y++L+D H
Sbjct: 389 GKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGH 439
>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
diamantinensis]
Length = 363
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 1 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 59
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ AL V EM
Sbjct: 60 STLLTMYVENKKFLEALXVFSEM 82
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +LDR F+ V G +P +YN LI F KL + EAS +FE ++
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMER 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+PN +Y+ L+D K AL +++ M+ P+
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN 351
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAV--GSSFGLTPDIHSYNALIYAFGKLKKT 122
PP SV NC++ LD+A++ FE + SF PD+ S+N +I K
Sbjct: 526 PP--SVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSF---PDVISFNIMIDGSLKAGDI 580
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
A + + G+ P+ +YS L++ L A+S D+M+++GF P V
Sbjct: 581 KSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSV 640
Query: 183 RRRCVREMDEESNDRVEALAKKF 205
+ C+ + + D++ KK
Sbjct: 641 LKYCISQGE---TDKLTEFVKKL 660
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P + YN L+ + K +A R+FE + P+ +S+++++D L D K+A
Sbjct: 525 LPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAE 584
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR 185
S++ M +AG +P T K+ R
Sbjct: 585 SLLVGMSHAGLSPDLFTYSKLINR 608
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R + P N +I G + L A + FE + G+ P++++Y LI
Sbjct: 272 EVLERGDSP--CAITYNTLIRGFCKLGRLKEASEIFEFMMER-GVRPNVYTYTGLIDGLC 328
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ KT EA ++ ++ +PN ++Y+++++ + AL +++ M
Sbjct: 329 GVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELM 378
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F+ + G+TPD+++Y LI +F K +A +FE + S+G P ++Y+
Sbjct: 304 VEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A+L + A + MV+AG P+ T
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A FE + S G +P + +Y ALI+A+ K K+ +A+ +F +V G +PN ++Y
Sbjct: 339 IEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
LVD + A V +++
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIG 421
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YF E+ P +V ++ G +D A++ +A+ SS G P+ Y+ALI
Sbjct: 431 YFPCEDRHTLAP---NVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALI 486
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
F K K A VF + G P+ +Y+ L+D + A+ V+ +M+
Sbjct: 487 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546
Query: 174 PSKET 178
P+ T
Sbjct: 547 PNVVT 551
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + F + + G P +H+Y +LI K + A +V ++ PN ++Y+
Sbjct: 495 IDSAQEVFLQM-TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 553
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D + + AL ++ M G +P+ T
Sbjct: 554 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 586
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VKPNAMSYSLLVDAHLTNRD 156
G TPD+ SYNALI KK+ EA + H+ + G PN +SYS ++D +
Sbjct: 159 LGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGE 218
Query: 157 QKAALSVIDEMVNAGFAP 174
A + DEM+ GF P
Sbjct: 219 VDKAYFLFDEMIGQGFPP 236
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A N +I A +D+A F + + GL PD+ SY+ +I+ K+ + +A F
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQN-GLRPDVVSYSTVIHILCKIGRVEDAVYHFNQ 438
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+VS G+ PN +S++ L+ + + K + EM+N G P
Sbjct: 439 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 481
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+V + + +I G ++D+AY F E +G F PD+ +Y++LI K + +A
Sbjct: 202 NVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGF--PPDVVTYSSLIDGLCKAQAMNKAEA 259
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +H+ GV PN +Y++++ + + + A+ ++ +M +G P
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 306
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ L+ A + + + S GL PD+ +Y LI + K+ + EA VF+ +V
Sbjct: 277 NIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYILLIQYYCKIGRCAEARSVFDSMV 335
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G KPN+ Y +L+ + T ++D M+ G
Sbjct: 336 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGI 374
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPDIHSY 109
D+VY + +S P ++ + +I G +I + + + FE + G+ PD
Sbjct: 431 DAVYHFNQMVSEGLSP--NIISFTSLIHGLCSIGEWKKVEELAFEMINR--GIHPDAIFM 486
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N ++ K + EA F+ ++ +GVKPN +SY+ L+D + ++ D MV+
Sbjct: 487 NTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVS 546
Query: 170 AGFAPSKET 178
G P T
Sbjct: 547 IGLRPDSWT 555
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN LI + + K E+ + F+ +VS+G++P++ +Y+ L++ + N +
Sbjct: 512 IGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVED 571
Query: 160 ALSVIDEM 167
AL++ EM
Sbjct: 572 ALALYREM 579
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 50 LDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+D YF E + + PP V + +I G +++A + + G+ P+ +
Sbjct: 219 VDKAYFLFDEMIGQGFPP--DVVTYSSLIDGLCKAQAMNKAEAILQHMFDK-GVMPNTRT 275
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + L + EA R+ + + G++P+ ++Y LL+ + A SV D MV
Sbjct: 276 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMV 335
Query: 169 NAGFAPS 175
G P+
Sbjct: 336 RKGQKPN 342
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +P++ SY+ +I F K + +A +F+ ++ G P+ ++YS L+D +
Sbjct: 195 GGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAM 254
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A +++ M + G P+ T
Sbjct: 255 NKAEAILQHMFDKGVMPNTRT 275
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 3 DLQRAFITLNEFETAYGDSIID--MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLE 58
+L R +FE AY SII M + F P TS Y V+ C+ +D+ + E
Sbjct: 450 NLARCLCGAGKFEKAY--SIIREMMSKGFIPDTSTYSKVIGLLCNA---SKVDNAFLLFE 504
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
+ ++ V +I + L +A + F+ + G P++ +Y ALI+A+ K
Sbjct: 505 EM-KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLK 562
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+K A+ +FE ++S G PN ++Y+ L+D H + + A + M
Sbjct: 563 ARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARM 611
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 86 LDRAYQTFEA-----VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
L +A++ EA V S G P+ Y+ALI F K+ K EA VF + G PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+YS L+D ++ AL V+ M+ AP+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++N LI A+G+ +A+++ E ++ G P +Y+ L++A D KAA
Sbjct: 498 GFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAA 557
Query: 161 LSVIDEMVNAGFAPSKET 178
SVI +M N GF PS+ +
Sbjct: 558 ESVILDMRNKGFRPSETS 575
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YN ++ A+ + E + V + + S G+ PNA++Y+ +++A+ D AL +
Sbjct: 361 PDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEM 420
Query: 164 IDEMVNAGFAPSKETLKKV 182
D+M+ G P+ T V
Sbjct: 421 FDQMMELGCVPNVATYNAV 439
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
V+ C +D A + F + S G P +YNAL++ FGK EA V +
Sbjct: 299 VLSACGREGLIDEAREFFSGLKSE-GYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEEN 357
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
P+A++Y+ +V A++ + VID M + G P+ T +
Sbjct: 358 NCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTI 404
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DRA++ + + GL PD+ ++N+L+ + + ++A V L + G KP+ +SY+
Sbjct: 660 DRAHEMLRLIHDA-GLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNT 718
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + + ++ EM + G P
Sbjct: 719 VIKGFCRKGLMQEGIRILSEMTSIGVGP 746
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P+ ++N ++ GK ++VF + + G +P+ +++ L+ A+ A
Sbjct: 463 GCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDA 522
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ +EM+ AGF+P T + R D ++ + V
Sbjct: 523 AKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESV 560
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ P+ +Y +I A+G++ +A +F+ ++ LG PN +Y+ ++
Sbjct: 390 ASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLS 449
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + ++ M G +P+ T + C ++
Sbjct: 450 EEMMKILGHMKLNGCSPNHITWNTMLAMCGKK 481
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S + +S P ++ N +I G A D+ A + +
Sbjct: 304 LLKACCKSG--RMQSALAVTKEMSAQNIP-RNTFIYNILIDGWARRGDVWEAADLMQQMK 360
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ E + S+GVKPN +Y+ L++
Sbjct: 361 RE-GVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 419
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ ALS +EM +G P +
Sbjct: 420 EKALSCFEEMKLSGLKPDR 438
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI--YA-FGKLKKTFEASRVFEHLVSL 135
G + D D+ FE GL P + +Y LI YA GK+ K E S+ EH
Sbjct: 62 GYTMVGDEDKCLLVFERF-KECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHA--- 117
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+K N +YS+L++ L +D A ++ ++++ G P
Sbjct: 118 GIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKP 156
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A ++ +A F+ + S G P +H+YNALI + +K +A ++ + +
Sbjct: 199 IIHGFARKGEMKKALDVFDMMRMS-GCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLA 257
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
GV PN +Y+ ++ + + D A + ++ + G T + + + C + +S
Sbjct: 258 GVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS- 316
Query: 196 DRVEALAKKFDIRMNTENRKNILFNL 221
ALA ++ R ++N+
Sbjct: 317 ----ALAVTKEMSAQNIPRNTFIYNI 338
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D+ RA +T E + S G+ P++ +Y LI + + +A FE + G
Sbjct: 375 INACSKAGDMQRATKTIEEM-KSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSG 433
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ LSV EMV+ T +C+ ++
Sbjct: 434 LKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMVDCELTVDMGTAVH-WSKCLLKI 492
Query: 191 DEESNDRVEALAKKFDIRMNTENRKNILFN 220
+ + EAL K F N N N L N
Sbjct: 493 ERTGGEITEALQKTFPPNWNVYN--NTLTN 520
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV C+I A + + +A + + + + G+ ++ +Y+ LI F KLK A +
Sbjct: 87 SVITYGCLINLYAKLGKVSKALEVSKEMEHA-GIKHNMKTYSMLINGFLKLKDWANAFAI 145
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
FE L+ G+KP+ + Y+ ++ A A+ + EM P+ T +
Sbjct: 146 FEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPI 199
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I + +DRA T + + P ++ +I+ F + + +A VF
Sbjct: 158 VVLYNNIITAFCGMGKMDRAVCTVKEMQKQRH-KPTTRTFMPIIHGFARKGEMKKALDVF 216
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P +Y+ L+ + R + A ++DEM AG +P++ T
Sbjct: 217 DMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHT 265
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D +A+ F + GL D+++Y AL+ A K + A V + + +
Sbjct: 269 IMHGYASLGDTGKAFAYFTKLRDE-GLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQ 327
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
+ N Y++L+D D A ++ +M G P T C + D +
Sbjct: 328 NIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRA 387
Query: 196 DRVEALAKKFDIRMNTENRKNIL 218
+ K ++ N + ++
Sbjct: 388 TKTIEEMKSVGVKPNVKTYTTLI 410
>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
Length = 852
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 50 LDSVYFQLENLSRA------EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT 103
L SV Q+EN A E ++ + N +I A+ A+ F + + G
Sbjct: 348 LYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKN-GFH 406
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ SY +L+ A+GK K +A +VFE + KPN +SY+ L+DA+ + A+ +
Sbjct: 407 PDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEI 466
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ EM G P+ ++ + C R + V + A+ I++NT
Sbjct: 467 LHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNT 514
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L + P +N VI + +A F ++ PD+ ++ +
Sbjct: 289 YFELMKGTNIRP---DTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTI 345
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I+ + + F +++ G+KPN +SY+ L+ A+ ++ K A SV +E+ GF
Sbjct: 346 IHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF 405
Query: 173 AP 174
P
Sbjct: 406 HP 407
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD +YNALI A G+ + A + + ++ + P+ +Y+ L++A ++ + K AL+V
Sbjct: 195 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 254
Query: 164 IDEMVNAGFAP 174
+M G P
Sbjct: 255 CKKMTENGVGP 265
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
I L+ + Q F + + YN +I + +A +F + KP+A
Sbjct: 139 IGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAE 198
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+Y+ L++AH + A++++D+M+ A PS+ T + C
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINAC 242
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S ++ + P ++ N +I G A D+ A + +
Sbjct: 685 LLKACCKSG--RMQSALAVTREMNAQKIP-RNTFVYNILIDGWARRGDIWEAADLMQQMN 741
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ E + + GVKPN +Y+ L+
Sbjct: 742 QE-GVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLP 800
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ ALS +E+ AG P K
Sbjct: 801 EKALSCFEELKLAGLKPDK 819
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +Y LI + K+ K +A V + + S+G+K N +YS+L++ L +D A
Sbjct: 464 GFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNA 523
Query: 161 LSVIDEMVNAGFAP 174
+V ++++ G P
Sbjct: 524 FAVFEDVIKDGLKP 537
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G A ++ RA + F+ + S G P +H++NAL+ + +K +A + + +
Sbjct: 580 IIHGFARAGEMRRALEIFDMMRRS-GCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALA 638
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
GV P+ +Y+ ++ + D A +M N G T + + + C +
Sbjct: 639 GVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCK 691
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 15/184 (8%)
Query: 38 LVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95
L+ +R+G +E D Q N +P + I C D+ RA +T E
Sbjct: 720 LIDGWARRGDIWEAAD--LMQQMNQEGVQP---DIHTYTSFINACCKAGDMLRATKTMEE 774
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+ ++ G+ P++ +Y LI+ + +A FE L G+KP+ Y L+ + L+
Sbjct: 775 MEAA-GVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRA 833
Query: 156 DQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209
A LS+ EM+ T +C+R+++ + + L K F
Sbjct: 834 TVAEAYIYSGILSICREMIEFELTVDMGT-AVYWSKCLRKIERIGGELTQTLQKTFPPDW 892
Query: 210 NTEN 213
NT +
Sbjct: 893 NTHH 896
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV C+I I + +A + + + S G+ ++ +Y+ LI F KLK A V
Sbjct: 468 SVITYGCLINMYTKIGKVSKALEVSKMM-KSVGIKHNMKTYSMLINGFLKLKDWTNAFAV 526
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
FE ++ G+KP+ + Y+ ++ A + A+ ++ EM P+ T +
Sbjct: 527 FEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPI 580
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I + ++DRA + + P ++ +I+ F + + A +F
Sbjct: 539 VVLYNNIIKAFCGMGNMDRAIHMVKEMQKE-RCRPTSRTFMPIIHGFARAGEMRRALEIF 597
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G P +++ LV + R + A+ ++DEM AG +P + T
Sbjct: 598 DMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHT 646
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD + ++AV S+F P + ++ + + A + FE + + G+ P++
Sbjct: 272 LDTQPENWQAVVSAFERIKKPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHV 331
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
Y+ L+ A+ RD + ALS + +M G
Sbjct: 332 YTSLIHAYAVGRDMEEALSCVRKMNEEGI 360
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE V GL PD+ YN +I AF + A + + +
Sbjct: 510 LINGFLKLKDWTNAFAVFEDVIKD-GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKE 568
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P + ++ ++ + + AL + D M +G P+ T
Sbjct: 569 RCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTF 612
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
K E LD + L +S E Y ++ + G A + D +A++ F + + GL
Sbjct: 627 KAVEILDEM--ALAGVSPDEHTYTTI------MHGYAALGDTGKAFEYFTKMRNE-GLQL 677
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +Y AL+ A K + A V + + + N Y++L+D D A ++
Sbjct: 678 DVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLM 737
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMD----EESNDRVEALAKKFDIRMNT 211
+M G P T C + D ++ + +EA K +++ T
Sbjct: 738 QQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYT 788
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +YN LI K EA+++ +VS+GVKP+ ++Y L++ +
Sbjct: 343 IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402
Query: 160 ALSVIDEMVNAGFAPS 175
AL++ EMV++G +P+
Sbjct: 403 ALALFKEMVSSGVSPN 418
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI +Y L+ K + E+ ++F+ +V +GVKP+ ++Y+ L+D A
Sbjct: 309 GLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEA 368
Query: 161 LSVIDEMVNAGFAP 174
++ MV+ G P
Sbjct: 369 TKLLASMVSVGVKP 382
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC +D A + ++ S G+ PDI +Y LI + ++ + +A +F+ +V
Sbjct: 353 NTLIDGCCLAGKMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 411
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAA 160
S GV PN ++Y++++ R AA
Sbjct: 412 SSGVSPNIITYNIILQGLFHTRRTAAA 438
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A + + + G+ PD +YN++++ + + EA + + S GV+PN ++YS
Sbjct: 225 MDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 283
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
L++ N A + D M G P T + + + +E RV K F
Sbjct: 284 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKE------GRVIESEKLF 337
Query: 206 DIRMNTENRKNIL 218
D+ + + +I+
Sbjct: 338 DLMVRIGVKPDII 350
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A Q F + F + P S N L++ F KL KT + R F+ ++ G +P +Y+
Sbjct: 76 LEEAIQCFSKM-KRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYN 134
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D D +AA + +EM G P T
Sbjct: 135 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVT 167
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ N +I G ++DRA + + G+ PD+ Y I+ L+K A V
Sbjct: 339 NLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKVV 397
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ G+K N++ Y+ L+DA+ + + L ++DEM
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 436
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD FE + PD+ +YNALI F K K + +
Sbjct: 169 NSMIDGFGKVGRLDDTVCFFEEM-KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 227
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN +SYS LVDA + A+ +M G P++ T
Sbjct: 228 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 272
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 82 NIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
+ D +R + E G + G+ P++ SYNALI+ F K K A + L G+KP
Sbjct: 314 GLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 373
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + Y + + +AA V++EM G
Sbjct: 374 DLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 406
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
E Y S+ NC I N+ D R VG + ++ +Y ALI ++
Sbjct: 270 EYTYTSLIDANCKI---GNLSDAFRLGNEMLQVGVEW----NVVTYTALIDGLCDAERMK 322
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
EA +F + + GV PN SY+ L+ + ++ AL +++E+ G P
Sbjct: 323 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 373
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 75 CVILG--CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
CV++ C N + +A F + + FGL + + A+I K + A+ +FE +
Sbjct: 449 CVLIDGLCKNKL-VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 507
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
V G+ P+ +Y+ L+D + + AL++ D+M G
Sbjct: 508 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGM 547
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN++I FGK+ + + FE + + +P+ ++Y+ L++
Sbjct: 160 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 219
Query: 161 LSVIDEMVNAGFAPS 175
L EM G P+
Sbjct: 220 LEFYREMKGNGLKPN 234
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ ++Y +LI A K+ +A R+ ++ +GV+ N ++Y+ L+D K A
Sbjct: 265 GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 324
Query: 161 LSVIDEMVNAGFAPS 175
+ +M AG P+
Sbjct: 325 EELFGKMDTAGVIPN 339
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY+ L+ AF K +A + + + +G+ PN +Y+ L+DA+ + A
Sbjct: 230 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA 289
Query: 161 LSVIDEMVNAG 171
+ +EM+ G
Sbjct: 290 FRLGNEMLQVG 300
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 34 SLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQT 92
S P++V+ ++G ++SVY ++ +V + VI G + +A
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV----NVVTFDVVINGLCKVGKFQKAGDV 251
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
E + ++G +P + +YN +I + K K F+A + + +V+ + PN +++++L+D
Sbjct: 252 VEDM-KAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC 310
Query: 153 TNRDQKAALSVIDEMVNAGFAPS 175
+ + AA V +EM G P+
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPN 333
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN LI F + EA ++ + + G+K + ++Y++LVDA + + A
Sbjct: 434 GVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKA 493
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
+ ++DEM G PS T + RE + + V L +K R N
Sbjct: 494 VRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRAN 543
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 21/160 (13%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + LD A + + S GL P++ +YNALI F K K EA +
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLKEAREM 391
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-------- 180
+ + G+ PN ++++ L+DA+ A + M++ G P+ T
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCR 451
Query: 181 ----KVRRRCVREMDEES--------NDRVEALAKKFDIR 208
K R+ +EM+ N V+AL KK + R
Sbjct: 452 EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 7 AFITLNEFETAYGDSIIDMEEI-FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
+ +F+ A GD + DM+ FSP Y ++ K + + E +++
Sbjct: 238 GLCKVGKFQKA-GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N +I G ++ A + FE + GL P++ +YN+LI K EA
Sbjct: 297 PNE--ITFNILIDGFCRDENVTAAKKVFEEMQRQ-GLQPNVVTYNSLINGLCSNGKLDEA 353
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + + +G+KPN ++Y+ L++ + K A ++D++ G AP+
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ ++N LI F + + A +VFE + G++PN ++Y+ L++ +N AL
Sbjct: 295 IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ D+M G P+ T + C ++M +E+ + ++ + K+
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DRA F+ + FG P I SYN L+ AF + K+ + +F + + GV PN +Y++
Sbjct: 95 DRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ ++ + A ++ M GF P
Sbjct: 155 LIKMSCKKKEFEKARGFLNWMWKEGFKP 182
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY+ +I K K +A +F+ + V P+ Y++L+D L +D K A
Sbjct: 179 GFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMA 238
Query: 161 LSVIDEMV 168
+ + D+++
Sbjct: 239 MQLWDKLL 246
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + SYN LI + K EAS + ++ G+KP+ +YS+L+ +R + A
Sbjct: 494 GCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELA 553
Query: 161 LSVIDEMVNAGFAP 174
L + + + +G P
Sbjct: 554 LELWHQFLQSGLEP 567
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI K KK FE +R F + G KP+ SYS +++
Sbjct: 144 GVAPNLQTYNVLIKMSCK-KKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDD 202
Query: 160 ALSVIDEMVNAGFAP 174
AL + DEM AP
Sbjct: 203 ALELFDEMSERRVAP 217
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 25 MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+E P Y +++ C + E ++ Q S EP V N +I G +
Sbjct: 526 LENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQ-SGLEP---DVMMHNILIHGLCS 581
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ LD A T A T ++ +YN L+ + K++ + A+ ++ ++ +G++P+ +
Sbjct: 582 VGKLDDA-MTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDII 640
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV-REM 190
SY+ ++ A+ D+ N G P+ T + R V R+M
Sbjct: 641 SYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVNRKM 689
>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D + AY+ + + G PD+ SYN ++ + K EA+ +FE + G P+ +SY
Sbjct: 306 DFEAAYRLLDEMVEK-GCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSY 364
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC 186
+L D K A ++DEM+ GF P ++ K V R C
Sbjct: 365 RILFDGFCNGMQFKEAAFILDEMIFKGFVPCSASICKFVNRLC 407
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E + + L P I Y+ LI K + EA V+E + G KP+ ++Y+++++
Sbjct: 246 EMIRNKIELDPAI--YSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVIINLFCK 303
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE-ESNDRVEALAKK 204
++D +AA ++DEMV G P + + R E E+ND E + ++
Sbjct: 304 DKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRR 355
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEAS-RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD +YN +I F K K FEA+ R+ + +V G KP+ +SY++++ +
Sbjct: 286 GYKPDTVTYNVIINLFCK-DKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGE 344
Query: 160 ALSVIDEMVNAGFAP 174
A + ++M G AP
Sbjct: 345 ANDLFEDMPRRGCAP 359
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + KS ++ V L C + + + E +G + D +YN LI F +
Sbjct: 111 RVQRTVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKA-----DACTYNLLIRGFCASGR 165
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+AS+VF+ + + GV PN +++ L+ + K A + +MV
Sbjct: 166 LDDASKVFDEMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMV 212
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SF + + SYN+L+ F K + +F + LG K +A +Y+LL+ +
Sbjct: 109 SFRVQRTVKSYNSLLSVFLMCKDFDKMRELFVGIEKLG-KADACTYNLLIRGFCASGRLD 167
Query: 159 AALSVIDEMVNAGFAPS 175
A V DEM N G +P+
Sbjct: 168 DASKVFDEMTNRGVSPN 184
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + LD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 173 SVVSYNTLMNGYIRLGHLDEGFRLKSAMLAS-GVLPDVYTYSVLINGLCKESKMDDANEL 231
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + M++ P T + +
Sbjct: 232 FDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCK 291
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 292 KGDLKQAHDLIDEMSMK 308
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV P+ +Y
Sbjct: 154 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTY 212
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 213 SVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 246
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 320 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYAALISGLCQEGRSVDAEKMLREMLSV 378
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G APS T
Sbjct: 379 GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVT 421
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F+ + G+TPD+++Y LI +F K +A +FE + S+G P ++Y+
Sbjct: 304 VEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L+ A+L + A + MV+AG P+ T
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A FE + S G +P + +Y ALI+A+ K K+ +A+ +F +V G +PN ++Y
Sbjct: 339 IEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYG 397
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
LVD + A V +++
Sbjct: 398 ALVDGLCKAGNISKAFEVYAKLIG 421
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113
YF E+ P +V ++ G +D A++ +A+ SS G P+ Y+ALI
Sbjct: 431 YFPCEDRHTLAP---NVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALI 486
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
F K K A VF + G P+ +Y+ L+D + A+ V+ +M+
Sbjct: 487 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546
Query: 174 PSKET 178
P+ T
Sbjct: 547 PNVVT 551
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A + F + + G P +H+Y +LI K + A +V ++ PN ++Y+
Sbjct: 495 IDSAQEVFLQM-TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 553
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++D + + AL ++ M G +P+ T
Sbjct: 554 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 586
>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g13630
Length = 826
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++
Sbjct: 510 IVLYNIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKIL 568
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R
Sbjct: 569 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRG 628
Query: 190 MDEESNDRV 198
E+ + V
Sbjct: 629 WKHENCNHV 637
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +D A F V GL P ++S+N LI + EA +
Sbjct: 263 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 321
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++L HL A VI +M++ G +P
Sbjct: 322 ASDMNKHGVEPDSVTYNILAKGFHLLGM-ISGAWEVIRDMLDKGLSP 367
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A+ + I DM ++ SP Y +++ C + +D L+++
Sbjct: 340 LAKGFHLLGMISGAW-EVIRDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLVLLKDMLS 397
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ + ++ G +D A F + + GL+PD+ +Y+ +I+ KL K
Sbjct: 398 RGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKAD-GLSPDLVAYSIVIHGLCKLGKF 456
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A +++ + + PN+ ++ L+ A S++D ++++G
Sbjct: 457 DMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSG 505
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 1/156 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N R + +AA N +I G ++ A Q + GL P+I YN+ I
Sbjct: 581 LKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKD-GLLPNISVYNSFIT 639
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ LK EA R +E ++ G+ + +Y+ L+D + + AL + EMV G P
Sbjct: 640 GYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIP 699
Query: 175 SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
T + R D + ++ + DIR N
Sbjct: 700 DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPN 735
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
L+ FE D ++ + ++ L+ C+ +G + ++L R S
Sbjct: 302 LDIFEETLRDGLVPTDVTYTV------LIRGCTEEG---MPEKAYELCRQMRDHGLLPST 352
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
N VI G N A F+ + S G+ PD +YN LI+ + +K EA ++E
Sbjct: 353 NEFNMVIKGLLNDKLWKDAVSLFKEMADS-GI-PDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ GVKP ++Y L+ + N A+ + EM GF P+ T
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVT 458
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++ AL + + +A ++ + + L ++PN + Y++L++ +L N + A
Sbjct: 696 GNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEA 755
Query: 161 LSVIDEMVNAGFAPSKET 178
+ DEM+ P T
Sbjct: 756 FRLHDEMLERKIMPDDTT 773
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +YN++I F K A V++ + + G+ PN ++Y+ +D + A
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLA 580
Query: 161 LSVIDEMVNAGFAP 174
L +++++ G P
Sbjct: 581 LKMLNDVRCKGLRP 594
>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
trifolia]
Length = 440
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + GV PN SY
Sbjct: 65 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASY 123
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 124 STLLTMYVENKKFLEALSVFSEM 146
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G + + D+A + + + + GL PDI +Y++L+ + K EA + F L
Sbjct: 298 NTVIDGLSKVGKTDQAAKLLDEMRAK-GLKPDIITYSSLVGGLSREGKVDEAIKFFHDLE 356
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-----------------K 176
LGVKPNA++Y+ ++ R A+ + MV G P+ K
Sbjct: 357 VLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAK 416
Query: 177 ETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209
E L+ + C+R + ++S+ A+K +RM
Sbjct: 417 EALELLNELCLRGVVKKSS------AEKVAVRM 443
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L RA E + G TP+ SYN L++ F K KK A + S G P+ ++Y+
Sbjct: 205 LGRAIDVLEKM-PKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYN 263
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ A + AA+ +++++ + G +P
Sbjct: 264 TLLTALCKDGKVDAAVELLNQLSSKGCSP 292
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +LI F K+ KT +A+R+ E + G P+ ++Y++L+ + A
Sbjct: 114 GDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDA 173
Query: 161 LSVIDEMVNAGFAPS 175
++ +MV G +PS
Sbjct: 174 EKLLADMVRRGCSPS 188
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD--AHLTNR 155
+S G PDI +YN L+ A K K A + L S G P ++Y+ ++D + +
Sbjct: 251 TSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 310
Query: 156 DQKAALSVIDEMVNAGFAP 174
DQ A L +DEM G P
Sbjct: 311 DQAAKL--LDEMRAKGLKP 327
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP 104
+GF L+S+ + R + P + +I G I +A + E + S G P
Sbjct: 102 EGFRFLESMVY------RGDIP--DIIPCTSLIRGFCKIGKTRKATRIMEIIEDS-GAVP 152
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +YN LI + +A ++ +V G P+ +++++L++ A+ V+
Sbjct: 153 DVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVL 212
Query: 165 DEMVNAGFAPS 175
++M G P+
Sbjct: 213 EKMPKHGCTPN 223
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
Y + N ++ +D A + + SS G +P + +YN +I K+ KT +A+
Sbjct: 256 YPDIVTYNTLLTALCKDGKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLSKVGKTDQAA 314
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDA 150
++ + + + G+KP+ ++YS LV
Sbjct: 315 KLLDEMRAKGLKPDIITYSSLVGG 338
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 37 PLVVACSR--KGF---ETLDSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P V+ C++ KGF + ++ +E L S EP V A N VI G + ++ A
Sbjct: 111 PDVILCTKLIKGFFNFKNIEKASRVMEILESHTEP---DVFAYNAVISGFCKVNQIEAAT 167
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
Q + + G PDI +YN +I + +K A V + L+ P ++Y++L++A
Sbjct: 168 QVLNRMKAR-GFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEA 226
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
+ A+ +++EM+ G P T +R C M E + + + +L K
Sbjct: 227 TIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 281
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI +YN ++ A K +A +F L +G PN SY+ ++ A + D+
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 444
Query: 159 AALSVIDEMVNAGFAPSKET 178
AL ++ M++ G P + T
Sbjct: 445 RALGMVPAMISKGIDPDEIT 464
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+++YNA+I K A+ + L S G +P+ +SY++L+ A L
Sbjct: 247 GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEG 306
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM + G P+K T
Sbjct: 307 EKLVAEMFSRGCEPNKVT 324
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++RA + ++ +S G PD+ SYN L+ AF K E ++ +
Sbjct: 256 NAIIRGMCKEGMVERAAELITSL-TSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMF 314
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S G +PN ++YS+L+ + A+SV+ M+ P
Sbjct: 315 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 355
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N + ++A + F + G P++ SYN +I A A + ++S G+ P
Sbjct: 403 CKN-GNANQALEIFNKL-RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDP 460
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKKVRR 184
+ ++Y+ L+ + + A+ ++D+M +GF P+ + L KVRR
Sbjct: 461 DEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 512
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +SY+ LI A K + A + ++++S G P+ ++Y+ ++ A N + AL
Sbjct: 353 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQAL 412
Query: 162 SVIDEMVNAGFAPS 175
+ +++ G P+
Sbjct: 413 EIFNKLRGMGCPPN 426
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V++ N +I + D RA A+ S G+ PD +YN+LI + E
Sbjct: 424 PP--NVSSYNTMISALWSCGDRSRALGMVPAMISK-GIDPDEITYNSLISCLCRDGLVEE 480
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A + + + G +P +SY++++ R A+ + EM+ G P++ T
Sbjct: 481 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETT 534
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD+ LI F K +ASRV E L S +P+ +Y+ ++ +AA
Sbjct: 108 GYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HTEPDVFAYNAVISGFCKVNQIEAA 166
Query: 161 LSVIDEMVNAGFAP 174
V++ M GF P
Sbjct: 167 TQVLNRMKARGFLP 180
>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
contains a PPR repeat domain PF|01535 [Arabidopsis
thaliana]
Length = 797
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++
Sbjct: 481 IVLYNIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKIL 539
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R
Sbjct: 540 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRG 599
Query: 190 MDEESNDRV 198
E+ + V
Sbjct: 600 WKHENCNHV 608
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +D A F V GL P ++S+N LI + EA +
Sbjct: 234 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 292
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++L HL A VI +M++ G +P
Sbjct: 293 ASDMNKHGVEPDSVTYNILAKGFHLLGM-ISGAWEVIRDMLDKGLSP 338
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A+ + I DM ++ SP Y +++ C + +D L+++
Sbjct: 311 LAKGFHLLGMISGAW-EVIRDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLVLLKDMLS 368
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ + ++ G +D A F + + GL+PD+ +Y+ +I+ KL K
Sbjct: 369 RGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKAD-GLSPDLVAYSIVIHGLCKLGKF 427
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A +++ + + PN+ ++ L+ A S++D ++++G
Sbjct: 428 DMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSG 476
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + + GL PD++SYNAL+ A+ + + A+ +F + +G +P+ SY++
Sbjct: 319 EKAEEVFEQMQEA-GLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNI 377
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LVDA+ A +V ++M G P+ ++
Sbjct: 378 LVDAYGRAGFLNDAEAVFEDMKRVGITPTMKS 409
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD SYN L+ A+G+ +A VFE + +G+ P S+ +L+ A +
Sbjct: 366 MGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSK 425
Query: 160 ALSVIDEMVNAGF 172
++++M +G
Sbjct: 426 CEDILNQMCKSGL 438
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 18 YGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77
+G +D IF + ++ +KG +T +S++ L+ L + + + ++ V
Sbjct: 80 FGSGFVD--GIFPVLSPTAKKIMDYLQKGVDT-ESIWGSLDMLQASLEIWDDILTVS-VQ 135
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
L WD + + + SSF D+ YN LI AFG+ EA + L+
Sbjct: 136 LRMRKQWDSIISICRWILLRSSF--KQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARC 193
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
PN +Y+LL+ A+ + + A +V EM N G S
Sbjct: 194 IPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSS 231
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L+ A F + G+ P++++YN+LI GK K EA +++E L+
Sbjct: 1094 NLLIDGLGKSKRLEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1152
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G KPN +Y+ L+ + + +A + M+ G P+
Sbjct: 1153 TKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A Q +E + S G+ PD+ + NA+++ K + A RVF L ++GV P+ ++Y+++
Sbjct: 548 KAIQRYELMKSK-GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 606
Query: 148 V 148
+
Sbjct: 607 I 607
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
++ N +A+ +V A VI + + A + F+ + G+ P+ +SYN+LI
Sbjct: 445 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLIS 503
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F K + +A +F+H+ G KPN ++ L ++ + + + A+ + M + G P
Sbjct: 504 GFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP 563
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 9/163 (5%)
Query: 30 SPFTSLYPLVVACSRKGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
SP T Y +++ C K E + Y +EN + V A+N +I
Sbjct: 597 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD-----VLAVNSLIDTLYKAGRG 651
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A++ F + L P +YN L+ G+ K E + E + PN ++Y+
Sbjct: 652 DEAWRIFYQL-KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 710
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++D N AL ++ M G P + V V+E
Sbjct: 711 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 753
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y+ L+ AFGK + + + + GVKPN SY++ + + A
Sbjct: 315 GVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEA 374
Query: 161 LSVIDEMVNAGFAP 174
++ +M N G P
Sbjct: 375 YRILAKMENEGCKP 388
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + ++YN L+Y K EA V+ ++ GV P+ +YS+L+ A RD +
Sbjct: 280 GIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETV 339
Query: 161 LSVIDEMVNAGFAPS 175
L ++ EM G P+
Sbjct: 340 LWLLREMEAHGVKPN 354
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD +YN L+ A GK + E +V E + G + ++Y+ ++ + +R +
Sbjct: 909 LGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQ 968
Query: 160 ALSVIDEMVNAGFAPSKET 178
A+ + +++ GF+P+ T
Sbjct: 969 AIDLYYNLMSQGFSPTPCT 987
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 162 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 220
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D N A+ + M++ P T + +
Sbjct: 221 FDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 280
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ ++ K
Sbjct: 281 KGDLKQAHDLIDEMSMK 297
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 143 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 201
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC 186
S+L++ A + DEM+ G P+ T + RC
Sbjct: 202 SVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRC 244
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 309 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 367
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+KP+ +Y+++++ D ++ EM G APS
Sbjct: 368 DLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPS 407
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV P+ SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 35 LYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF 93
L L+ + R G + V+ Q+ L S A N +I+ +D AY F
Sbjct: 144 LRALIASWGRLGLAQYAHEVFVQMPRLGL----RPSTAVYNALIVASVRAGAVDTAYLRF 199
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ + + G PD +YN L++ + EA R+ + G++PN +Y++LVD
Sbjct: 200 QQMPAD-GCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCN 258
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ A+ V D M G +P++ + + +
Sbjct: 259 AGRPEDAVHVFDTMKEKGVSPNEASYRTL 287
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR----- 155
G+TPD +S+NA I +F ++KK +A +F ++ LGV P+ +Y+ L+ A R
Sbjct: 556 GITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEA 615
Query: 156 ---------------DQKAALSVIDEMVNAG-FAPSKETLKKVRRRCVREMDEESNDRVE 199
L ++ + G F+ + + + K RR V ++ SN +E
Sbjct: 616 KEILLLMESSGSSATTHHTHLPIVSALTKTGQFSKAGQLMNKYNRRNV-QLSCGSNRTIE 674
Query: 200 ALAKKFDIRM 209
+ K D+R+
Sbjct: 675 S---KIDLRV 681
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVG 97
F TL S Y +L N+ A+ K + +I G + LD A+ F +
Sbjct: 459 FNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEM- 517
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ +G+ P+ H+YN L++A +A + + G+ P+A S++ + + +
Sbjct: 518 AEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKV 577
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A ++ + M+ G P T
Sbjct: 578 DKARNIFNAMLRLGVVPDNYT 598
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 29 FSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
P T++Y L+VA R G +D+ Y + + + A+ N ++ G +D
Sbjct: 172 LRPSTAVYNALIVASVRAG--AVDTAYLRFQQMP-ADGCQPDCFTYNTLVHGVCQRGIID 228
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A + + + G+ P++ +Y L+ F + +A VF+ + GV PN SY L
Sbjct: 229 EALRLVRQMEGA-GIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTL 287
Query: 148 VDA 150
V
Sbjct: 288 VHG 290
>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++
Sbjct: 468 IVLYNIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKIL 526
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R
Sbjct: 527 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRG 586
Query: 190 MDEESNDRV 198
E+ + V
Sbjct: 587 WKHENCNHV 595
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +D A F V GL P ++S+N LI + EA +
Sbjct: 221 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 279
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++L HL A VI +M++ G +P
Sbjct: 280 ASDMNKHGVEPDSVTYNILAKGFHLLGM-ISGAWEVIRDMLDKGLSP 325
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A+ + I DM ++ SP Y +++ C + +D L+++
Sbjct: 298 LAKGFHLLGMISGAW-EVIRDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLVLLKDMLS 355
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ + ++ G +D A F + + GL+PD+ +Y+ +I+ KL K
Sbjct: 356 RGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKAD-GLSPDLVAYSIVIHGLCKLGKF 414
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A +++ + + PN+ ++ L+ A S++D ++++G
Sbjct: 415 DMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSG 463
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 53 VYFQLENLSRAEPPYKSV-AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
++ +LEN S +P S + INC+ DLD A+ F + GL PD+ +Y+
Sbjct: 341 IFEELEN-SDCKPDIISYNSLINCL----GKNGDLDEAHIRFREMQEK-GLNPDVVTYST 394
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI FGK K A R+F+ +++ G PN ++Y++L+D + A+ + ++ G
Sbjct: 395 LIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 454
Query: 172 FAPSKETLKKVRR 184
P T + R
Sbjct: 455 LTPDSITYSVLER 467
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V + + Y +E + G PDI +YN LI +FG+ K +EA ++FE L
Sbjct: 288 NTVFTALGRLKQISHLYDLYEKMKLD-GPLPDIFTYNILISSFGRAGKVYEAIKIFEELE 346
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ KP+ +SY+ L++ N D A EM G P
Sbjct: 347 NSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNP 387
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ A +D+A++ FE + PD ++Y +I G++ K E+ +F
Sbjct: 77 IFAFNMLLDALAKDQKVDQAFKVFEDMKKKH-CEPDEYTYTIMIRMTGRIGKLDESLALF 135
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E +++ G PN ++Y+ ++ A +R + + +M+ P++ T + E
Sbjct: 136 EEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAE 195
Query: 190 MDEESNDRVEALAKKF 205
D+V L++K+
Sbjct: 196 GQLHKLDKVVELSRKY 211
>gi|407850326|gb|EKG04756.1| hypothetical protein TCSYLVIO_004182 [Trypanosoma cruzi]
Length = 794
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 32 FTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILG-CANIWDLDRA 89
T+ L AC RKG ++ +Y QL L P + + LG CA + D+ +A
Sbjct: 131 LTTYQMLFRACERKGQYQRAFLLYKQLRELMHIVPDSPTYDTL----LGFCAALRDVAQA 186
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
E + + G+TP++++YN L+ + E RVF ++ G+KP +Y+ L
Sbjct: 187 SYFIEEMKQN-GVTPNVNTYNCLMSVLVESAPYSETLRVFMQMIEKGIKPTIRTYNTLSK 245
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAP 174
A + D A + +EM G P
Sbjct: 246 AARIHGDYDRAFQLFEEMKKHGMLP 270
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFE--HLVSLGVKPNAMSYSLLVDAHLTNRD 156
SF + PD+ +YN ++ + + K E ++F +L VK NA ++ ++ A+ RD
Sbjct: 537 SFNVRPDVETYNTMLRGYLCMNKYDEVEKLFSSMYLSYSQVKCNAETFCWVLRAYREKRD 596
Query: 157 QKAALSVIDEM 167
+AA +++ M
Sbjct: 597 TEAATQLLESM 607
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 5 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 61
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G PD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 62 DYSKAISIFSRLKRS-GFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 121 STLLTMYVENKKFIEALSVFSEM 143
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 240
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 241 ANNLIQEMQNRGIEPNSIT 259
>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
Length = 499
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + A++ FE + + PD YN +I F +L + +A +F +
Sbjct: 229 LIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKN 288
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+PNA +Y+ L++ H D +AA SV +EM NAG P
Sbjct: 289 DCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEP 327
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 4 LQRAFITLNEFETAYGDSIID-MEEI----FSPFTSLYPLVVACSRKGFETLDSVYFQL- 57
L + F+ + E ETA+ ++D M E P Y ++A +G + +++ F+L
Sbjct: 191 LIKHFVRIGELETAF--KVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMMEA--FELF 246
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E + + N +I G + +D+A F + + P+ +Y LI
Sbjct: 247 EEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKN-DCEPNAFNYATLINGHC 305
Query: 118 KLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
K K EA+R VFE + + GV+P+A+SY+ L+ + A++++ EM G
Sbjct: 306 K-KADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKG 359
>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
Length = 798
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++
Sbjct: 468 IVLYNIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKIL 526
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R
Sbjct: 527 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRG 586
Query: 190 MDEESNDRV 198
E+ + V
Sbjct: 587 WKHENCNHV 595
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +D A F V GL P ++S+N LI + EA +
Sbjct: 221 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 279
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++L HL A VI +M++ G +P
Sbjct: 280 ASDMNKHGVEPDSVTYNILAKGFHLLGM-ISGAWEVIRDMLDKGLSP 325
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A+ + I DM ++ SP Y +++ C + +D L+++
Sbjct: 298 LAKGFHLLGMISGAW-EVIRDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLVLLKDMLS 355
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ + ++ G +D A F + + GL+PD+ +Y+ +I+ KL K
Sbjct: 356 RGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKAD-GLSPDLVAYSIVIHGLCKLGKF 414
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A +++ + + PN+ ++ L+ A S++D ++++G
Sbjct: 415 DMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSG 463
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G L+ A + F + ++ G+ P + +YN +I K + EA ++F
Sbjct: 366 IVLYNILIQGMFIAGKLEVAKELFSKLFAN-GIRPSVRTYNIMIKGLLKEGLSDEAYKLF 424
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ G P++ SY++++ L N+D A+ +IDEMV F+ T K +
Sbjct: 425 RKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKML------- 477
Query: 190 MDEESNDRV 198
+D ES+D +
Sbjct: 478 LDLESHDEI 486
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I++YNAL+ + + +AS+VFE +V G P+ SYS+L++ + +R A
Sbjct: 221 GVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEA 280
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ +M P+ T
Sbjct: 281 KALLTQMSEKELIPNTVT 298
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N + A + F + + P+ ++ L+ K EA VFE +
Sbjct: 162 LINGLCNEGRIKEAVELFNEMAGRDAM-PNTVTFTILVDVLCKKGMVSEARCVFETMTEK 220
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+PN +Y+ L++ + + A V + MV G APS
Sbjct: 221 GVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPS 260
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P+ +YN L+ EA +F+ + S G+ PN +YS+L+D + + AL
Sbjct: 292 LIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEAL 351
Query: 162 SVIDEMVNAGFAP 174
++ M P
Sbjct: 352 KLLTSMQERKLEP 364
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE-AV 96
LV +KG + F+ EP ++ N ++ G +++ A + FE V
Sbjct: 197 LVDVLCKKGMVSEARCVFETMTEKGVEP---NIYTYNALMNGYCLRLEMNDASKVFEIMV 253
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G G P +HSY+ LI + K ++ EA + + + PN ++Y+ L+
Sbjct: 254 GK--GCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASS 311
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A + +M ++G P+ T
Sbjct: 312 LLEAQELFKKMCSSGMLPNLRT 333
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN+LI K + EA +F+ L G+ P+A++Y+ L+ H A
Sbjct: 647 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 706
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
++ V++GF P++ T + ++E D+E
Sbjct: 707 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N +I G + LD A S G PDI +YN LI K A
Sbjct: 367 PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSA 426
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ + G +PN ++Y++L+D + A +V+DEM G A
Sbjct: 427 RELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLA 474
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G PDI ++N+LI+ K+ K EA +++ ++ GV N ++Y+ L+ A L
Sbjct: 504 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 563
Query: 158 KAALSVIDEMVNAG 171
+ AL ++++M+ G
Sbjct: 564 QEALKLVNDMLFRG 577
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D +YN LI A + + +FE ++S G+ PN +S ++L++ + + A
Sbjct: 577 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 636
Query: 161 LSVIDEMVNAGFAPSKET 178
L + +M++ G P T
Sbjct: 637 LEFLRDMIHRGLTPDIVT 654
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y LI F K + EA V + + G+ NA+ Y+ L+ A + + A
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496
Query: 161 LSVIDEMVNAGFAP 174
L++ +M + G P
Sbjct: 497 LNMFGDMSSKGCKP 510
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SXKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G PD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 426
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS EM
Sbjct: 118 STLLTMYVENKKFLEALSXFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
Length = 528
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + +C R L+ L+ + AE S A NC D+ A Q
Sbjct: 342 YTSVIKCLASCGR-----LEDAETLLDEMV-AEGVCPSPATYNCFFKEYRGRNDVSGALQ 395
Query: 92 TFEAVGSSFGLT-PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ + LT PDIH+YN L+ F KL + ++ + V P+ SY+LL+
Sbjct: 396 LYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHG 455
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDEES 194
++ + A EM+ GF P K T + + RR R +DEE+
Sbjct: 456 FCASQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEA 511
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY+ +++ + + K +F + G+ P +Y+ ++ + + A
Sbjct: 299 GIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDA 358
Query: 161 LSVIDEMVNAGFAPSKET 178
+++DEMV G PS T
Sbjct: 359 ETLLDEMVAEGVCPSPAT 376
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSF--------- 100
D++ F E + R PP +V N ++ G N+ L+ A + F E VG
Sbjct: 251 DAMEFLSEMVERGIPP--NVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTI 308
Query: 101 ------------------------GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
G+ PDI +YNAL+ + + EA +VFE ++ G
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG 368
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P A SY++L++ + +R A S++ EM + P T
Sbjct: 369 CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVT 410
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +Y +I K + EA +F + G PN+ SY++++ L N+D A
Sbjct: 508 GTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTA 567
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ +IDEMV F+ + T + + +D ES D +
Sbjct: 568 IRLIDEMVGKRFSVNLSTFQML-------LDLESQDEI 598
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN++++ F L + EA+R+F+ +V V PN +++++LVD A
Sbjct: 263 GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEA 322
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRR-CVREMDEESNDRVEALAKK 204
V + M G P T + C++ + E+ E + +K
Sbjct: 323 RLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G N + A + F + G P++ SY +I K T A VF+ +
Sbjct: 167 NALINGLCNEGKIKEAVELFNEMVKR-GHEPNVISYTTVINGLCKTGNTSMAVDVFKKME 225
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G KPN ++YS ++D+ +R A+ + EMV G P+
Sbjct: 226 QNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPN 267
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 44 RKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF--G 101
+K + T+ S+ Q++ Y INC + L+ + +G F G
Sbjct: 106 KKQYSTVVSLCNQMDLFRVTHNVYSLNILINC-------LCRLNHVDFSVSVLGKMFKLG 158
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD ++NALI K EA +F +V G +PN +SY+ +++ + A+
Sbjct: 159 IHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAV 218
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
V +M G P+ T + + D ND +E L++
Sbjct: 219 DVFKKMEQNGCKPNVVTYSTIIDSLCK--DRLVNDAMEFLSE 258
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A + FE + G P HSYN LI + K ++ EA + + + P+ ++YS
Sbjct: 354 MNEAKKVFEIMIRK-GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYS 412
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ K AL++ EM + G P+
Sbjct: 413 TLMQGLCQLGRPKEALNLFKEMCSYGPHPN 442
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD +Y+ L+ +L + EA +F+ + S G PN ++Y +L+D + AL
Sbjct: 404 LNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEAL 463
Query: 162 SVIDEMVNAGFAPS 175
++ M P+
Sbjct: 464 KLLKSMKEKKLEPN 477
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+AY+ ++ S G+ PD+ +YN LI K + A R+F+ L G+ P+ ++Y L
Sbjct: 518 KAYKLLRSIIDS-GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALAKKF 205
+D L + A+ + ++ +G +PS + R R ++ + N ++ L KK+
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636
Query: 206 DIRMNTENRKN 216
+ + +E N
Sbjct: 637 NFPVESEVLAN 647
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD + +N LIYA K K EA VF + G+KPN ++YS L++ + + AL
Sbjct: 369 MQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENAL 428
Query: 162 SVIDEMVNAGFAPS 175
++ EMV+ G +P+
Sbjct: 429 ALFQEMVSNGVSPN 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TP+ +Y +L++ F + EA + E + S GV+PN ++YS +D N A
Sbjct: 263 GVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEA 322
Query: 161 LSVIDEMVNAGFAPSKET 178
+ D MV G P T
Sbjct: 323 RKIFDSMVKRGLKPDITT 340
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + + VI G D D+AY T+ + + P++ Y+++I A K + +A V
Sbjct: 197 NVVSYSTVIDGLLKGGDPDKAYATYREMLDRR-ILPNVVIYSSIIAALCKGQAMDKAMEV 255
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +V GV PN +Y+ LV ++ A+ +++M + G P+ T
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVT 305
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
GL P++ SY LI A+G+ KK + A+ F + +G+KP++ SY+ L+ A+ + +
Sbjct: 443 LGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHE 502
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A + +EM G PS ET V
Sbjct: 503 KAYASFEEMCKEGIKPSVETYTSV 526
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P + +YN L+ A+ + + + ++ + + +L +KP++++YS ++ A + RD
Sbjct: 582 SKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDF 641
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVR 183
K A MV +G P + +K+R
Sbjct: 642 KRAFFYHKMMVKSGQVPDPRSYEKLR 667
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P HSY ALI+A+ +A FE + G+KP+ +Y+ ++DA + D
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539
Query: 161 LSVIDEMV 168
+ + M+
Sbjct: 540 MEIWKLML 547
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + YN L+ A+ K E +F + G+KP+A +Y++L+DA+
Sbjct: 374 GIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIV 433
Query: 161 LSVIDEMVNAGFAPS 175
+++ EM + G P+
Sbjct: 434 ETLLREMEDLGLEPN 448
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 53 VYFQLENLSRAEPPYKSV-AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
++ +LEN S +P S + INC+ D+D A+ F+ + GL PD+ +Y+
Sbjct: 487 IFEELEN-SNCQPDVISYNSLINCL----GKNGDVDEAHMRFKEMQEK-GLNPDVVTYST 540
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI FGK K A +F+ +++ G PN ++Y++L+D + A+ + ++ G
Sbjct: 541 LIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQG 600
Query: 172 FAPSKETLKKVRR 184
P T + R
Sbjct: 601 LTPDSITYAVLER 613
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN LI ++G+ + A ++FE L + +P+ +SY+ L++ N D A
Sbjct: 460 GPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEA 519
Query: 161 LSVIDEMVNAGFAP 174
EM G P
Sbjct: 520 HMRFKEMQEKGLNP 533
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPDI +YN+LI K + EA +F+ L G+ P+A++Y+ L+ H A
Sbjct: 629 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 688
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
++ V++GF P++ T + ++E D+E
Sbjct: 689 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N +I G + LD A S G PDI +YN LI K A
Sbjct: 349 PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSA 408
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ + G +PN ++Y++L+D + A +V+DEM G A
Sbjct: 409 RELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLA 456
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I + A F + SS G PDI ++N+LI+ K+ K EA +++ ++
Sbjct: 463 NCLISALCKDEKVQDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV N ++Y+ L+ A L + AL ++++M+ G
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 559
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D +YN LI A + + +FE ++S G+ PN +S ++L++ + + A
Sbjct: 559 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 618
Query: 161 LSVIDEMVNAGFAPSKET 178
L + +M++ G P T
Sbjct: 619 LEFLRDMIHRGLTPDIVT 636
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y LI F K + EA V + + G+ NA+ Y+ L+ A + + A
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478
Query: 161 LSVIDEMVNAGFAP 174
L++ +M + G P
Sbjct: 479 LNMFGDMSSKGCKP 492
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D ++YNALI A K +T +A +F+ L + G+KPNA++++ L++ + A
Sbjct: 246 GLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIA 305
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILF 219
+++MV+AG P T + C + +E + + +K D++ +T N ++
Sbjct: 306 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIH 364
Query: 220 NLEYSASYA 228
L +Y
Sbjct: 365 KLLKERNYG 373
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D A++ E + S+ G TPD ++Y++ I K+K + E ++
Sbjct: 290 NSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 348
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-LKKVRRRCVREMDE 192
VKP+ ++Y++++ L R+ EMV++G P T +R C+
Sbjct: 349 QKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 408
Query: 193 ESNDRVEALAK 203
E+ + + ++K
Sbjct: 409 EAENVLMEMSK 419
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+H Y AL+ ++ E + + LG +P+ +Y+ +VD R K A +
Sbjct: 74 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 133
Query: 164 IDEMVNAGFAPSKETLKKV 182
+ EM G AP T V
Sbjct: 134 LQEMFEKGLAPCVVTCTAV 152
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + + A+I A+ K + +A RV E + G KPN +Y+ LV A
Sbjct: 141 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKA 200
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCV 187
++++++M G P T +R +C+
Sbjct: 201 MTLLNKMRACGVNPDAVTYNLLIRGQCI 228
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNAL+ F K +A + + + GV P+A++Y+LL+ + ++A
Sbjct: 176 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 235
Query: 161 LSVIDEMVNAGFAPSKET 178
++ M G + T
Sbjct: 236 FRLLRLMEGDGLIADQYT 253
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +Y + A+ + EA V + GV + M+Y+ L+D H +
Sbjct: 384 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 443
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A+S++ +M + P++ T + R VR
Sbjct: 444 HAVSILKQMTSVASVPNQFTYFILLRHLVR 473
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L A + +G S GL P++ ++N LI+ F + K EAS+VF +
Sbjct: 277 NTLIAGHCEKGLLSSALKLKNMMGKS-GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMK 335
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG------------FAPSKETLKK 181
++ V PN ++Y+ L++ + D + A ++MV G F K+ +
Sbjct: 336 AVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTR 395
Query: 182 VRRRCVREMDEES 194
+ V+E+D+E+
Sbjct: 396 KAAQFVKELDKEN 408
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANI 83
+ L P VV F TL + + L A + + A+N +I G +
Sbjct: 302 SGLQPNVVT-----FNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D + A++ +E + + G+ DI +YNALI+ K KT +A++ + L + PN+ +
Sbjct: 357 GDHEMAFRFYEDMVCN-GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSST 415
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+S L+ ++ + M+ +G P+++T
Sbjct: 416 FSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTF 451
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SY L+ A+G+ + +A F+ + +PN +SY+ L+DA+ + K A
Sbjct: 397 GLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEA 456
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
+S++ EM G P ++ + C R D + AK I++N
Sbjct: 457 ISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLN 506
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y ++++++ K + VF+ +V+ GVKPN +SY+ L+ A+ + AL +
Sbjct: 330 PDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGI 389
Query: 164 IDEMVNAGFAP 174
+ G P
Sbjct: 390 FKLLKQNGLRP 400
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+I SYNAL+ A+ +A +F+ L G++P+ +SY+ L++A+ + + A
Sbjct: 362 GVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKA 421
Query: 161 LSVIDEM 167
EM
Sbjct: 422 REAFKEM 428
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + +A +F + KP+A Y+ L+ AH + A++++D+M+
Sbjct: 158 YGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDML 217
Query: 169 NAGFAPSKETLKKVRRRC 186
A PS+ T V C
Sbjct: 218 RAAIPPSRTTYNNVINAC 235
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 8 FITLNEFETAYGDS---------IIDMEEIFSP--FTSLYPLVVACSR-KGFETLDSVYF 55
++ N AYG + + +ME+ P S+ L+ AC R + +D++
Sbjct: 437 IVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTI-- 494
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
LE +++ ++ N I N D +A + + AV + + PD +YN LI
Sbjct: 495 -LE-AAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELY-AVMMASNVNPDAVTYNILISG 551
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K+ K E+ + FE +V L + YS L+ +++ A S M +G P
Sbjct: 552 LCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLP 610
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKGFETLDSVYFQLENL 60
G LQ+A + E M+ + + L+ AC S + F+T S+Y ++E
Sbjct: 269 GKLQKAMEKFRDME---------MKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEER 319
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
PP+ + + VI G AY FE + G ++ Y ALI ++ K
Sbjct: 320 GLEIPPH----SYSLVIGGLCKQRKCMEAYAVFETMNQK-GCRANVAIYTALIDSYSKNG 374
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
EA R+FE + + G +P+A++YS+LV+ + + + D N G A
Sbjct: 375 SMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 427
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL HSY+ +I K +K EA VFE + G + N Y+ L+D++ N + A
Sbjct: 320 GLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEA 379
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + + M N GF P T
Sbjct: 380 MRLFERMKNEGFEPDAVT 397
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N ++ G N ++ A + FE + + PD +YN +I + K K +A
Sbjct: 219 SLYTYNFLVNGLVNSMFIESAEKVFEVMDGG-KIVPDTVTYNIMIKGYCKAGKLQKAMEK 277
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
F + VKP+ ++Y L+ A + RD LS+ EM G
Sbjct: 278 FRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGL 321
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++ A FE + S G D + YNA+I A K K +A +F +
Sbjct: 436 LIDGLGKAGRIEDAENLFEEM-SEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEE 494
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G ++++L+D + A+ D+M++ G P+
Sbjct: 495 GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPT 534
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +++A F + G+TPD+ SY+ +I F K+K EA ++F
Sbjct: 303 VVTYNSLMDGYCLVKQVNKAKSLFNVMAQR-GVTPDVWSYSIMINGFCKIKMVDEAMKLF 361
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
E + + PN ++Y+ LVD + AL ++DEM + G
Sbjct: 362 EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRG 403
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y LI K+ + +A +VFE L+ G PN +Y+ L++
Sbjct: 438 GIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEG 497
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
L+++ +M + G P+ T ++ + E DE ND+ E L ++ R
Sbjct: 498 LAMLSKMKDNGCIPNAITY-EILIHSLFEKDE--NDKAEKLLREMIAR 542
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ +YN+L+ + +K+ +A +F + GV P+ SYS++++ + A+ +
Sbjct: 302 DVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLF 361
Query: 165 DEMVNAGFAPSKET--------LKKVRRRCVREMDEESNDR 197
+EM P+ T K R C E+ +E +DR
Sbjct: 362 EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDR 402
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + LD A + FE + G +P+I++Y +LI F E + +
Sbjct: 449 LINGLCKVGRLDDAQKVFEDLLVK-GYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDN 507
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
G PNA++Y +L+ + + A ++ EM+ G
Sbjct: 508 GCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN---RDQK 158
++PD+ +Y++LI F + K A +F ++S + PN ++S+L+D R+ K
Sbjct: 229 ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAK 288
Query: 159 AALSVI 164
L+V+
Sbjct: 289 NVLAVM 294
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+AY+ ++ S G+ PD+ +YN LI K + A R+F+ L G+ P+ ++Y L
Sbjct: 518 KAYKLLRSIIDS-GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALAKKF 205
+D L + A+ + ++ +G +PS + R R ++ + N ++ L KK+
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636
Query: 206 DIRMNTENRKN 216
+ + +E N
Sbjct: 637 NFPVESEVLAN 647
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQT 92
T+ LV A +KGF L+S + L R P ++ N I G LDRA +
Sbjct: 296 TTFNKLVHALCKKGF-VLESERLFDKVLKRGVCP--NLFTFNIFIQGLCKEGSLDRAVRL 352
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
V S GL PD+ +YN +I + + EA +V+ G +PN +Y+ ++D +
Sbjct: 353 LGCV-SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ + V GF P + T
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFT 437
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G + DLD AY F + + ++ +YN +I AF + A R+F
Sbjct: 645 VVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLF 704
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-RCVR 188
+ G P+ +Y +L+D + + E + GF PS T +V CV
Sbjct: 705 SEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVE 764
Query: 189 EMDEESNDRVEALAKKFDIRMNTEN 213
+E+ + + +K DI +T N
Sbjct: 765 HKVQEAVGIIHLMVQK-DIVPDTVN 788
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G LD A + + S G+TPD+ +YN L+ K K+ E +F+ +
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQ-GMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMT 602
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G PN ++Y+ ++++ ++ A+ ++ EM + G P
Sbjct: 603 EKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTP 643
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ + A V+ G D DRA + F+ + L PD+ ++N L++A K E+
Sbjct: 257 FSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC-LCPDVTTFNKLVHALCKKGFVLESE 315
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
R+F+ ++ GV PN ++++ + A+ ++ + G P T V
Sbjct: 316 RLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTV 371
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN++I + K +A+R+ + V G KP+ +Y LV+ + D A
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454
Query: 161 LSVIDEMVNAGFAPS 175
++V + + G PS
Sbjct: 455 MAVFKDGLGKGLRPS 469
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN +I K+ +A+ + ++ G P+ +Y+ LVD + +A
Sbjct: 500 GCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSA 559
Query: 161 LSVIDEMVNAGFAP 174
+ +++ M + G P
Sbjct: 560 IELVNRMWSQGMTP 573
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN L+ + + K A + + S G+ P+ ++Y+ L++ +
Sbjct: 535 GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEV 594
Query: 161 LSVIDEMVNAGFAPS 175
+ + M G AP+
Sbjct: 595 MEIFKAMTEKGCAPN 609
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+++Y I +F + + + A R+ ++ LG NA++Y +V D A +
Sbjct: 224 DVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELF 283
Query: 165 DEMVNAGFAPSKETLKKV 182
DEM+ P T K+
Sbjct: 284 DEMLECCLCPDVTTFNKL 301
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 28 IFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
++ P ++ ++V C R+G +DS + ++ + ++ Y +V + ++ G
Sbjct: 268 VYKPNVCIFNILVKYHC-RRG--DIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGR 324
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A++ FE + S + PD +YN LI F + K A V E + + G PN +YS
Sbjct: 325 LKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYS 384
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LVD + A V+ EM ++G P
Sbjct: 385 ALVDGLCKAGKLQDAKGVLAEMKSSGLKP 413
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DRA E + ++ G P++ +Y+AL+ K K +A V +
Sbjct: 349 NVLINGFCREGKADRARNVIEFMKNN-GCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMK 407
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
S G+KP+A++Y+ L++ N A+ ++ EM
Sbjct: 408 SSGLKPDAITYTSLINFFSRNGQIDEAIELLTEM 441
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 55 FQLENLSRAEPPY----KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
F+L +RA P K+V A CV+ G DLD A +G P+ SYN
Sbjct: 140 FELLVAARARPDTFTWNKAVQA--CVVAG-----DLDEAVGMLRRMGCDGAPAPNAFSYN 192
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+I K +A ++F+ + V PN ++Y+ ++D H+ D ++ + +M+
Sbjct: 193 VVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH 252
Query: 171 GFAPS 175
G P+
Sbjct: 253 GLKPN 257
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 13/179 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G L++ FI L++ + E+ P Y +V K + L++V +
Sbjct: 447 GQLEKCFIILSDMQ----------EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFI 496
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P V N +I D+A+ E + SS G+ P I +YN LI K +
Sbjct: 497 KDVLPGAQV--YNAIIDAYIECGSTDQAFMLAEKMKSS-GVPPSIVTYNLLIKGLCKQSQ 553
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
EA + + L + G+ P+ +SY+ L+ A + AL + EM G PS T +
Sbjct: 554 ISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYR 612
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 64 EPPYKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
E P K+V N +I G DL+ ++ + + GL P++ +YN L+ +
Sbjct: 213 EMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQM-LRHGLKPNVITYNVLLSGLCRA 271
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ E + V + + S + P+ +YS+L D H D + LS+ +E V G
Sbjct: 272 GRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKG 323
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N LI A+G+ + + + + G+KPN +SY +V+A N A
Sbjct: 428 GVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEA 487
Query: 161 LSVIDEM 167
++++D+M
Sbjct: 488 VAILDDM 494
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 51 DSVYFQLENL-SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
D + E + S PP S+ N +I G + A + +++ ++GL PD+ SY
Sbjct: 520 DQAFMLAEKMKSSGVPP--SIVTYNLLIKGLCKQSQISEAEELLDSL-RNYGLAPDVISY 576
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
N LI A T A + + + G+KP+ +Y +L
Sbjct: 577 NTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRML 614
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++++YN+LI GK K EA +++E L++ G KPN +Y+ L+ + + + A
Sbjct: 309 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 368
Query: 161 LSVIDEMVNAGFAPSKET 178
+ M+ G P+ T
Sbjct: 369 FAAYGRMIVGGCRPNSST 386
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M E FSP Y PL+ + G E ++++ ++ EP + A N ++ G
Sbjct: 166 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG-CEP---NCAIYNILLNGYRI 221
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D ++ + FE++ G+ PDI SY +I + + F+ L +G++P+ +
Sbjct: 222 AGDTEKVCELFESMVEQ-GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLI 280
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+Y+LL+ + + ALS+ ++M G AP+
Sbjct: 281 TYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 313
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL PD+ +YN LI+ GK + EA ++ + G+ PN +Y+ L+ +L +
Sbjct: 271 TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLI-LYLGKAGK 329
Query: 158 KA-ALSVIDEMVNAGFAPSKETLKKVRR 184
A A + +E++ G+ P+ T + R
Sbjct: 330 AAEAGKMYEELLAKGWKPNVFTYNALIR 357
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN +I K K EA ++ L+S G P +Y L+D L + + + A ++ DEM
Sbjct: 141 TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEM 200
Query: 168 VNAGFAPS 175
+ G P+
Sbjct: 201 LECGCEPN 208
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 74 NCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
N +I G CAN ++DRA+ + + + PD ++N L+ + K A + E +
Sbjct: 440 NALIDGHCAN-GNMDRAFAMLKEM-DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEM 497
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
S G+KP+ +SY+ L+ + D K A V DEM++ GF P+ T + + +
Sbjct: 498 KSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK---N 554
Query: 193 ESNDRVEALAKKFDIRMNTENRKNILFNLE 222
E D E L K+ + T N L +E
Sbjct: 555 EEGDHAEQLLKEMISKGITPNDNTYLSLIE 584
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + ++ A F+ + G+ PD ++Y + I K K EAS +
Sbjct: 225 NVVTYNTIIHGYCSRGRVEGARMIFDLMKCR-GVKPDSYTYGSFISGMCKEGKLEEASGM 283
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E + +G++P A++Y+ L+D + + + A D+MV G P+ T
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVST 333
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ +A+ + + S G+ P +Y +LIY K + +A +FE +V
Sbjct: 370 NILINGYCRCGNVKKAFTLHDEMISK-GIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIV 428
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-RC------ 186
G+ P+ + ++ L+D H N + A +++ EM P + T + + RC
Sbjct: 429 RKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVE 488
Query: 187 -VREMDEESNDR 197
RE+ EE R
Sbjct: 489 AARELIEEMKSR 500
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I L +A + F + + G+ P++ +YN +I+ + + A +
Sbjct: 190 SVVTFNIMINVLCKEGKLKKA-KEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMI 248
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ + GVKP++ +Y + + A ++++M G P+ T
Sbjct: 249 FDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVT 298
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 53 VYFQLEN------LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+Y Q+EN L AE ++ A N ++ A+ A F + + GL PDI
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN-GLRPDI 258
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SY +L+ A+G+ + +A VF + KPN +SY+ L+DA+ + K A+ ++ E
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 167 MVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
M G P ++ + C R + + A+ I +NT
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNT 363
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y ++++++ + +F+ +V+ GVKPN ++Y+ L+ A+ + + AL++
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245
Query: 164 IDEMVNAGFAP 174
+ + G P
Sbjct: 246 FNLIKKNGLRP 256
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + + +A +F + KP+A Y+ L+ AH + A++++++M+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 169 NAGFAPSKETLKKVRRRC 186
A P++ T V C
Sbjct: 74 RAAIPPTRTTYNNVINAC 91
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 37 PLVVACSR--KGFETLDSV---YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P V+ C++ KGF TL ++ +E L + P V A N +I G + +D A +
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQP--DVFAYNALINGFCKMNRIDDATR 179
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + S +PD +YN +I + K A +V L+S +P ++Y++L++A
Sbjct: 180 VLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ AL ++DEM++ G P T + R +E
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ K K +A +F L +G PN+ SY+
Sbjct: 384 LDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 442
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ A ++ D+ AL +I EM++ G P + T + RE
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ---TFEAVGSSFGLTPDIHSYNALIY 114
E LSR P + N +I G +DRA++ E GS PD+ SYN L+
Sbjct: 253 EMLSRGLKP--DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSE----PDVISYNILLR 306
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A K E ++ + S PN ++YS+L+ + + A++++ M G P
Sbjct: 307 ALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 366
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD +SY+ LI AF + + A E ++S G P+ ++Y+ ++ N A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 161 LSVIDEMVNAGFAPSKET 178
L + ++ G +P+ +
Sbjct: 423 LEIFGKLGEVGCSPNSSS 440
>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like [Glycine max]
Length = 480
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N V+ + LD+ ++ + +G + G +PD H++N L++ GK K A +
Sbjct: 261 ILTYNIVMYAKYRLGKLDQFHRLLDEMGRN-GFSPDFHTFNILLHVLGKGDKPLAALNLL 319
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
H+ +G++P + ++ L+D + A DEM+ G P
Sbjct: 320 NHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIP 364
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G N +++ A + FE + + +P++ +Y LI+ K K A +
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGN-RCSPNVRTYTELIHGLCKSGKVERAMVL 269
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
F +V G++PN ++Y+ L+ + A ++ M G P+ T + C
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329
Query: 188 REMDEESNDRVEALAKK 204
RE EE+ + +L KK
Sbjct: 330 REKVEEAQLFLGSLVKK 346
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD HSY++LI + KK +A+ + E ++ G++ + ++Y++++D + +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 159 AALSVIDEMVNAGFAP 174
+ D+M+ G P
Sbjct: 440 GPKKIFDKMIATGINP 455
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G N L A++ + ++ GL P+ +++ LI A K +K EA
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETN-GLVPNDWTFSVLIDALCKREKVEEAQLF 339
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LV GVK N + Y+ L+D AA ++ +M++ GF P
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP 385
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 57/113 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y + ++ + + +A + +V GV PN ++Y+ L+ + A
Sbjct: 452 GINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTEN 213
S + MV G+ P++++ + R V++ +++ + +A D+++ E+
Sbjct: 512 FSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLED 564
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +LI K K A + + ++S G P+A SYS L+D + A ++++M+
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414
Query: 169 NAGFAPSKETLKKVRRRCVREMDEESNDRV 198
G S T + VRE+ E ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKI 444
>gi|297814175|ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320808|gb|EFH51230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 802
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 44 RKG-FETLDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KG F+T+ V Q+ EN A+ +A N +I G + D A + + G
Sbjct: 640 KKGYFKTVRGVLDQMGENFCAAD-----IATYNVIIQGLGKMGRADLAGAVLDRLTKQGG 694
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
DI YN LI A GK + A+++F+H+ S G+ P+ +SY+ +++ + K A
Sbjct: 695 YL-DIVMYNTLINAIGKANRLDAATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAY 753
Query: 162 SVIDEMVNAGFAPSKET 178
+ M++AG P+ T
Sbjct: 754 KYLKAMLDAGCLPNHVT 770
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC + +D A + F + + G PD YN L+ K +K EA ++FE +V
Sbjct: 328 LIQGCCKSYRMDDAMRIFGEMQYN-GFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQE 386
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV+ + +Y++L+D N +A ++ ++ G
Sbjct: 387 GVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKG 422
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 74 NCVILGCANIWDLDRAYQTFEAV-------GSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
N I G DLD A F+ + GSSF PDI +YN+LI+ K +A
Sbjct: 250 NICIHGFGCWGDLDAALSLFKEMKERSSVSGSSF--APDICTYNSLIHVLCLFGKAKDAL 307
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V++ L G +P+ +Y +L+ + A+ + EM GF P
Sbjct: 308 IVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIFGEMQYNGFVP 355
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+ L++ + Y + N +I LD A Q F+ + S+ G+ PD+ SYN +I
Sbjct: 686 LDRLTK-QGGYLDIVMYNTLINAIGKANRLDAATQLFDHMKSN-GINPDVVSYNTMIEVN 743
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
K K EA + + ++ G PN ++ ++L
Sbjct: 744 SKAGKLKEAYKYLKAMLDAGCLPNHVTDTIL 774
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 53 VYFQLEN------LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+Y Q+EN L AE ++ A N ++ A+ A F + + GL PDI
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN-GLRPDI 258
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SY +L+ A+G+ + +A VF + KPN +SY+ L+DA+ + K A+ ++ E
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 167 MVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
M G P ++ + C R + + A+ I +NT
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNT 363
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y ++++++ + +F+ +V+ GVKPN ++Y+ L+ A+ + + AL++
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245
Query: 164 IDEMVNAGFAP 174
+ + G P
Sbjct: 246 FNLIKKNGLRP 256
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D ++A + + ++ S + PD +YN LI KL K E+ R FE +V V Y
Sbjct: 378 DYEKALELYTSMRES-NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVY 436
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S L+ +++ A S M +G P
Sbjct: 437 SSLIYSYIKQGKLSEAESTFSSMKKSGCFP 466
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + + +A +F + KP+A Y+ L+ AH + A++++++M+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 169 NAGFAPSKETLKKVRRRC 186
A P++ T V C
Sbjct: 74 RAAIPPTRTTYNNVINAC 91
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G PD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 59 DYSKAISIFSRLKRS-GFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + + I G NI ++D A + F+ + S G PD+ +N LI K+ + EA +F
Sbjct: 566 IVSYSAAIGGLVNIQEVDHAMKIFKDLWSH-GHCPDVVCFNVLIRGLCKVNRFTEAEDLF 624
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LV G+ P+ ++Y+L +D N + A++ + M PS
Sbjct: 625 HELVKRGLSPSVVTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPS 670
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ ++ ALIY K + EA + +KP++ Y L+ A+L++ + +A
Sbjct: 701 GCPPNQITFMALIYGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSA 760
Query: 161 LSVIDEMVNAGFAP 174
+ EMV+ GF P
Sbjct: 761 FEIFREMVDLGFFP 774
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+D+A Q F+ + TPD+ Y+ LI K K T A +F + GV+P+
Sbjct: 281 VDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPD 335
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD FE + S PD+ +YN LI F K K + F +
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEM-KSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMK 230
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN +SYS LVDA + AL +M G P++ T
Sbjct: 231 QSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHT 275
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P S N L++ F +L KT R F+ ++ G KP +Y++++D D +AA +
Sbjct: 96 PKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGL 155
Query: 164 IDEMVNAGFAPSKET 178
+EM G P T
Sbjct: 156 FEEMKFRGLIPDTVT 170
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
I +L A++ + + S G+ ++ +Y ALI +++ EA +F +V+ GV PN
Sbjct: 286 IGNLSDAFRLADEM-SQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLA 344
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
SY+ L+ + ++ AL ++DEM G P
Sbjct: 345 SYTALIHGFVKAKNMDRALELLDEMKGRGIKP 376
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D+VYF E S + P V N +I L + + F + S GL P++ SY+
Sbjct: 186 DTVYFFEEMKSMSCEP--DVITYNTLINCFCKFGKLPKGLEFFREMKQS-GLKPNVVSYS 242
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
L+ AF K +A + + + LG+ PN +Y+ LVDA+ + A + DEM
Sbjct: 243 TLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQV 302
Query: 171 G 171
G
Sbjct: 303 G 303
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL P+ H+Y +L+ A+ K+ +A R+ + + +GV+ N ++Y+ L+D K
Sbjct: 267 LGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKE 326
Query: 160 ALSVIDEMVNAGFAPS 175
A + +MV AG P+
Sbjct: 327 AEELFGKMVTAGVIPN 342
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS-------VAAIN-CVILG--CANIWDLDRAYQTFEAV 96
+ TL YF+ EN S + V A+ CV++ C N + +A F +
Sbjct: 416 YTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKL-VSKAIDYFGRI 474
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ FGL + Y A+I K + A+ +FE + G+ P+ +Y+ L+D L +
Sbjct: 475 SNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGN 534
Query: 157 QKAALSVIDEMVNAG 171
AL++ D+M G
Sbjct: 535 VVQALALRDKMAEIG 549
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN++I +GK+ + + FE + S+ +P+ ++Y+ L++
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKG 222
Query: 161 LSVIDEMVNAGFAPS 175
L EM +G P+
Sbjct: 223 LEFFREMKQSGLKPN 237
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 82 NIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
+ D++R + E G + G+ P++ SY ALI+ F K K A + + + G+KP
Sbjct: 317 GLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKP 376
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
+ + Y + + +AA V++EM G
Sbjct: 377 DLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGI 409
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ +I G ++DRA + + + G+ PD+ Y I++ L+K A V
Sbjct: 342 NLASYTALIHGFVKAKNMDRALELLDEMKGR-GIKPDLLLYGTFIWSLCGLEKIEAAKVV 400
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ G+K N Y+ L+DA+ + +
Sbjct: 401 MNEMQEKGIKANTFIYTTLMDAYFKSEN 428
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL A + F + S G PD +Y L+ + K + +A +V +++ GV+PN ++Y
Sbjct: 208 DLVNAEKVFSEI-SDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTY 266
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+++DA+ + A ++ID+M++ F PS KV
Sbjct: 267 GVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKV 304
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
+W+ + + FE G P + +YN LI + + EA R+++ +V +PN
Sbjct: 347 GKVWEARKLFDEFEQ-----GTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPN 401
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A +Y++L+ + K + +++EM++ G P+K T
Sbjct: 402 AFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKST 439
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
T + +G+ P++ S+N LI A K A +VF+ + ++G+ PN ++Y+ ++
Sbjct: 144 TLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGF 203
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKET 178
++ D A V E+ + G+ P T
Sbjct: 204 VSRGDLVNAEKVFSEISDKGWLPDATT 230
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + F+ + + G+ P++ +Y ++ F A +VF + G P+A +Y
Sbjct: 173 DVENALKVFDEM-PTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTY 231
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++L+ + A+ V+D M G P++ T
Sbjct: 232 TVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVT 265
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I G ++ A E + GL+PD+ SY+ ++ F + EA RV
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALRV 472
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V G+KP+ ++YS L+ R K A + +EM+ G P + T
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ AY+ + + G +P + +YNALI K +A V E + G+ P+ +SYS
Sbjct: 396 MNEAYRVLREMNDN-GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
++ + D AL V EMV G P T ++ C + +E+ D E + +
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + +Y +LI++ K A + + G+ PN +Y+ LVD A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V+ EM + GF+PS T + CV E++ +E + +K
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 50 LDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
LD+ N+S AE +K +V N +I G ++D A F+ + +
Sbjct: 176 LDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK- 234
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI + KL+K + ++ + G++PN +SY+++++ K
Sbjct: 235 GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 161 LSVIDEMVNAGFA 173
V+ EM G++
Sbjct: 295 SFVLTEMNRRGYS 307
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+LI F EA +VFE ++ KP+ +Y++++ H D + A ++ EMV +
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Query: 171 GF 172
GF
Sbjct: 670 GF 671
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV P+ SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALS+ EM
Sbjct: 118 STLLTMYVENKKFLEALSIFAEM 140
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 47/78 (60%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ PD+ +Y++L+Y + + EA ++F+ +++ G KP+ SY++L++ + +
Sbjct: 335 TEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRI 394
Query: 158 KAALSVIDEMVNAGFAPS 175
A + +EM++ G P+
Sbjct: 395 DEAKQLFNEMIHQGLTPN 412
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+++Y +I K+ +T A+ + + + G +PN ++YS ++D+H +R A
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257
Query: 161 LSVIDEMVNAGFAP 174
L + M G +P
Sbjct: 258 LDIFSYMKVKGISP 271
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F+A+ + G PD+ SYN LI + K+K+ EA ++F ++ G+ PN +SY+ L+
Sbjct: 362 ARKLFDAMITK-GCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLI 420
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ A ++ M G P+
Sbjct: 421 HGLCQLGSLREARNLFKNMHTNGNLPN 447
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + +D A Q F + GLTP+ SYN LI+ +L EA +F
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQ-GLTPNNVSYNTLIHGLCQLGSLREARNLF 436
Query: 130 EHLVSLGVKPNAMSYSLLVDA 150
+++ + G PN +YS+L+D
Sbjct: 437 KNMHTNGNLPNLFTYSILLDG 457
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +YN+LI + EAS + + SL + P+ +++++LVD A
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327
Query: 161 LSVIDEMVNAGFAP 174
V+ M G P
Sbjct: 328 QGVLKTMTEMGVEP 341
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S + PDI ++N L+ K K EA V + + +GV+P+ ++YS L+ + +
Sbjct: 301 SLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVV 360
Query: 159 AALSVIDEMVNAGFAP 174
A + D M+ G P
Sbjct: 361 EARKLFDAMITKGCKP 376
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ Y +I K EA F ++ G P+ +SY++++ L ++D+ A
Sbjct: 513 GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRA 572
Query: 161 LSVIDEMVNAGF 172
+ +I EM + GF
Sbjct: 573 VQLIGEMRDKGF 584
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+P+I++ + LI F L++ A V ++ LG++P ++++ L++ A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187
Query: 161 LSVIDEMVNAGFAP 174
+ + D+MV G P
Sbjct: 188 MELFDDMVARGCRP 201
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + L A F+ + ++ G P++ +Y+ L+ F K +A R+F +
Sbjct: 417 NTLIHGLCQLGSLREARNLFKNMHTN-GNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQ 475
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
S KPN + Y++L+DA + + + A + E+ G P+ +
Sbjct: 476 STYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQ 519
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A++ F A+ S++ P++ YN LI A K +A ++F L G++PNA Y+ +
Sbjct: 466 KAFRLFRAMQSTYS-KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTI 524
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
++ AL M G P + + + R + DE
Sbjct: 525 INGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDE 569
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + +A + F+ + + G PD+H+Y +I K+ +T A+ +
Sbjct: 191 TIVTFNTLINGLCKVGKFGQAVELFDDMVAR-GYQPDVHTYTTIINGLCKIGETVAAAGL 249
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F + G +P+ ++YS ++D+ +R AL + M G +P+
Sbjct: 250 FRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPN 296
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 92 TFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
FEA G + G+ P++ +Y++L+ + + EA ++F+ +++ G KP+ SY++
Sbjct: 348 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNI 407
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L++ + + A + +EM++ G P
Sbjct: 408 LINGYCKAKRIGEAKQLFNEMIHQGLTP 435
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N +I G + L A+ F+ + ++ G PD+ +Y+ L+ F K +A R+F
Sbjct: 437 IVSYNTLIDGLCQLGRLREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQGYLAKAFRLF 495
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ S +KPN + Y++L+DA +R+ K A + E+ G P+ +
Sbjct: 496 RAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ 543
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SYN LI + K K+ EA ++F ++ G+ P+ +SY+ L+D + A
Sbjct: 397 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 456
Query: 161 LSVIDEMVNAGFAP 174
+ M+ G P
Sbjct: 457 HDLFKNMLTNGNLP 470
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+I +YN+LI + EAS + ++SL + PN +++SLL++ + A
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEA 351
Query: 161 LSVIDEMVNAGFAPSKET 178
V+ M G P+ T
Sbjct: 352 RGVLKTMTEMGVEPNVVT 369
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S + P+I +++ LI F K FEA V + + +GV+PN ++YS L++ + +
Sbjct: 325 SLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVV 384
Query: 159 AALSVIDEMVNAGFAP 174
A + D M+ G P
Sbjct: 385 EARKLFDVMITKGCKP 400
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I G + A Q F + GLTPDI SYN LI +L + EA +F
Sbjct: 402 VFSYNILINGYCKAKRIGEAKQLFNEMIHQ-GLTPDIVSYNTLIDGLCQLGRLREAHDLF 460
Query: 130 EHLVSLGVKPNAMSYSLLVDA 150
+++++ G P+ +YS+L+D
Sbjct: 461 KNMLTNGNLPDLCTYSILLDG 481
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ Y +I K EA F ++ G PN SY++++ L ++D+ A
Sbjct: 537 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRA 596
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +I EM GF T
Sbjct: 597 VQLIGEMREKGFVADVAT 614
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +A++ F A+ S++ L P++ YN LI A K + EA ++F L G++PN Y+
Sbjct: 488 LAKAFRLFRAMQSTY-LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYT 546
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+++ AL M G P++ + + R ++ DE
Sbjct: 547 TIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDE 593
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I + A F +G + G PD+ +Y+ +I + K ++ EA +F ++ +
Sbjct: 233 IINGLCKIGETVAAAGLFRKMGEA-GCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ PN +Y+ L+ + A ++++EM++ P+ T
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVT 334
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+AY+ ++ S G+ PD+ +YN LI K + A R+F+ L G+ P+ ++Y L
Sbjct: 518 KAYKLLRSIIDS-GVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTL 576
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMDEESNDRVEALAKKF 205
+D L + A+ + ++ +G +PS + R R ++ + N ++ L KK+
Sbjct: 577 IDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKY 636
Query: 206 DIRMNTENRKN 216
+ + +E N
Sbjct: 637 NFPVESEVLAN 647
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 37 PLVVACSR--KGFETLDSV---YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P V+ C++ KGF TL ++ +E L + P V A N +I G + +D A +
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQP--DVFAYNALINGFCKMNRIDDATR 179
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + S +PD +YN +I + K A +V L+S +P ++Y++L++A
Sbjct: 180 VLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ AL ++DEM++ G P T + R +E
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ K K +A +F L +G PN+ SY+
Sbjct: 384 LDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 442
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ A ++ D+ AL +I EM++ G P + T + RE
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LSR P + N +I G +DRA++ + G PD+ SYN L+ A
Sbjct: 253 EMLSRGLKP--DMFTYNTIIRGMCKEGMVDRAFEMVRNLELK-GCEPDVISYNILLRALL 309
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K E ++ + S PN ++YS+L+ + + A++++ M G P
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 366
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD +SY+ LI AF + + A E ++S G P+ ++Y+ ++ N A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 161 LSVIDEMVNAGFAPSKET 178
L + ++ G +P+ +
Sbjct: 423 LEIFGKLGEVGCSPNSSS 440
>gi|154337018|ref|XP_001564742.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061780|emb|CAM38812.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 596
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V ++ ++L A I + +A Q A +G+ P ++YNAL+ + + T V
Sbjct: 406 TVHTLDLLVLALARIGEERKALQLVSAYEPRWGVAPRTNTYNALLTGCSRYRSTMLHRVV 465
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN-AGFAPSKETLKKVRRRCV 187
++ + + GV PN +++ +L+ +T+ + A++ ++E+ G E + + R
Sbjct: 466 YKTMKNSGVVPNVLTFRVLIRQAVTSGNIDEAIAYLEEVTTYPGLRVEVEMILPILERAA 525
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
R D E+ RV + K DI ++
Sbjct: 526 RVGDGETATRVSQYSLKCDIGID 548
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC +GC L + +EA+ G TPD ++N L+ + K K EA +
Sbjct: 482 NCCRMGC-----LKETIRIYEAMILE-GNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
S G+ PNA+S+ L++ + ++ + A SV DEM G P+
Sbjct: 536 SDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPT 577
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ +YN L+ F K A ++ +++ G+ PN ++++ L+D H++ + K AL
Sbjct: 294 IHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEAL 353
Query: 162 SVIDEMVNAGF 172
+ M G
Sbjct: 354 KMFHMMEAKGL 364
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y+ALI F ++ + A + + +G+ PN + YS L+ K
Sbjct: 433 GIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKET 492
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + + M+ G P T
Sbjct: 493 IRIYEAMILEGNTPDHFT 510
>gi|255572014|ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533700|gb|EEF35435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 671
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F + G P I SY AL+ A K K EA RV+EH++
Sbjct: 431 NAVLVACSKASETTAAVQIFRRMIEQ-GEKPTIVSYGALLSALEKGKLYDEAVRVWEHML 489
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
+ VKPN +Y+++ ++I +MV++G P+ T + C
Sbjct: 490 KVDVKPNLYAYTIMASVFAGQGKFTYVDAIIQKMVSSGIEPTIITYNAIISGC------- 542
Query: 194 SNDRVEALAKKFDIRMNTEN 213
+++ + + A ++ RM +N
Sbjct: 543 THNNLSSAAYEWFHRMKVQN 562
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
+GSS G P++ YN+L+ A K K EA ++ + G+ PN ++Y+ L+ ++
Sbjct: 145 IGSSIG--PNLFIYNSLLSAVKKSKLFEEAEKILNDMTQEGIAPNVVTYNTLMGIYVEKG 202
Query: 156 DQKAALSVIDEMVNAGFAPS 175
AL+++++M GF P+
Sbjct: 203 QATKALNILEQMHEKGFIPT 222
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV---DAHLTNRDQKA----ALS 162
N LI+ GK KK + A ++E L+ G PN MSY L+V + LT ++ +
Sbjct: 354 NHLIWLMGKAKKWWAALEIYEDLLDKGPNPNNMSYELIVSHFNILLTAARKRGIWRWGVR 413
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P V C +
Sbjct: 414 LLNKMEDKGLKPGSREWNAVLVACSK 439
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F ++ G KP +SY L+ A + A
Sbjct: 422 GLKPGSREWNAVLVACSKASETTAAVQIFRRMIEQGEKPTIVSYGALLSALEKGKLYDEA 481
Query: 161 LSVIDEMVNAGFAPS 175
+ V + M+ P+
Sbjct: 482 VRVWEHMLKVDVKPN 496
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP V + + +I G D D+AY T+ + G+ PD+ +YN ++ A K + +
Sbjct: 203 PP--DVVSYSTIIDGLFKEGDSDKAYSTYHEM-LERGILPDVVTYNTIVAALCKAQAMDK 259
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A V +V GV P+ ++Y+ +V + ++ K A+ ++++M + G P T
Sbjct: 260 AMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVT 313
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V N ++ +D+A + + G+ PD +YN++++ +
Sbjct: 231 EMLERGILP--DVVTYNTIVAALCKAQAMDKAMDVLNRMVKN-GVMPDCITYNSIVHGYC 287
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ EA + E + S GV+P+A++Y+ L+D N A ++D M+ G P+
Sbjct: 288 SSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPN 345
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 91 QTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q+ EA+G S G+ PD +Y +L+ K + EA ++ + ++ G+KPN ++YS
Sbjct: 291 QSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
L+ + T ++D MV G P + + C + +
Sbjct: 351 TLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQN 396
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNR 155
+ G P + SYN L+ ++ EA + + G P+ +SYS ++D
Sbjct: 161 TELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEG 220
Query: 156 DQKAALSVIDEMVNAGFAP 174
D A S EM+ G P
Sbjct: 221 DSDKAYSTYHEMLERGILP 239
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S + N ++ G + LD ++ A+ +S G+ PD+++Y+ LI K K +A +
Sbjct: 151 SAVSYNTLMNGYIRLGVLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDADEL 209
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
F+ ++ G+ PN ++++ L+D H N A+ + +M++ P T + +
Sbjct: 210 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 269
Query: 189 EMD-EESNDRVEALAKK 204
+ D ++++D ++ +++K
Sbjct: 270 KGDLKQAHDLIDDMSRK 286
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 132 DIRVAQSVFDAI-TKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTY 190
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 191 SVLINGLCKESKMDDADELFDEMLVKGLVPNGVT 224
>gi|357121156|ref|XP_003562287.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g01390-like [Brachypodium distachyon]
Length = 293
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNALIYAFGKLKKTFEASRVF 129
A V+ A D+D A + +E + S G P + SY A + + E RVF
Sbjct: 140 ATFTTVMHWLARAGDVDAAMRVWEEMRSRRGRCRPTLVSYTACVKILFDAGRAAEGRRVF 199
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
E +V+ G++P+ +Y++L++ HL + + KA L ++ M +AG P K + ++C R
Sbjct: 200 EEMVAEGLRPSCTTYTVLIE-HLADAGKFKATLEIMSNMRDAGVEPDKPLCNILVQKCSR 258
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V N +I GC + +D A + F E G + + P + +Y LI + + + +A R+
Sbjct: 185 VVTYNTMINGCYRVKKMDEAEKYFVEMKGKN--IEPTVVTYTTLIKGYVSVDQVHDALRL 242
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E + G+KPNA++YS L+ A S++ EMV+ AP ++
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKDNSI 293
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 23 IDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+ +E + +L+ +++ R+G + YF + LS P + N +I G
Sbjct: 109 LGVERTIKSYDALFKVIM---RRGRFMMAKRYFN-KMLSEGIEPTRHT--FNVMIWGFFL 162
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+D A + FE + S ++PD+ +YN +I ++KK EA + F + ++P +
Sbjct: 163 SGKMDTAMRFFEDMKSR-EISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVV 221
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+Y+ L+ +++ AL +++EM G P+ T
Sbjct: 222 TYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAIT 257
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G N +++ A + FE + + +P++ +Y LI+ K K A +
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGN-RCSPNVRTYTELIHGLCKSGKVERAMVL 269
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
F +V G++PN ++Y+ L+ + A ++ M G P+ T + C
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329
Query: 188 REMDEESNDRVEALAKK 204
RE EE+ + +L KK
Sbjct: 330 REKVEEAQLFLGSLVKK 346
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD HSY++LI + KK +A+ + E ++ G++ + ++Y++++D + +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 159 AALSVIDEMVNAGFAP 174
+ D+M+ G P
Sbjct: 440 GPKKIFDKMIATGINP 455
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G N L A++ + ++ GL P+ +++ LI A K +K EA
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETN-GLVPNDWTFSVLIDALCKREKVEEAQLF 339
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV GVK N + Y+ L+D AA ++ +M++ GF P +
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 57/113 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y + ++ + + +A + +V GV PN ++Y+ L+ + A
Sbjct: 452 GINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTEN 213
S + MV G+ P++++ + R V++ +++ + +A D+++ E+
Sbjct: 512 FSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLED 564
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +LI K K A + + ++S G P+A SYS L+D + A ++++M+
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414
Query: 169 NAGFAPSKETLKKVRRRCVREMDEESNDRV 198
G S T + VRE+ E ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKI 444
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D+ L+ + + P V N + L +
Sbjct: 2 ERALSPDRYTYSTLITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLC 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + GV P SY
Sbjct: 59 DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENKKFLEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|242049778|ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
gi|241926010|gb|EER99154.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
Length = 466
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 71 AAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
A N ++ G C + D A+ + + + G D SYN L+ KL + +AS +
Sbjct: 291 AVYNAMLAGFCKDEKDFGGAFAVLDDMRKN-GCKADAVSYNTLVAGLCKLGRWRDASELV 349
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E + G P+ ++Y +L D + A V+DEMV GFAPSK+ +K RE
Sbjct: 350 EDMPRRGCHPDVVTYRMLFDGMCAAGEFLEANQVLDEMVFKGFAPSKDGAQKFVEGIERE 409
Query: 190 MD 191
D
Sbjct: 410 GD 411
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G N +++ A + FE + + +P++ +Y LI+ K K A +
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNR-CSPNVRTYTELIHGLCKSGKVERAMVL 269
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
F +V G++PN ++Y+ L+ + A ++ M G P+ T + C
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329
Query: 188 REMDEESNDRVEALAKK 204
RE EE+ + +L KK
Sbjct: 330 REKVEEAQLFLGSLVKK 346
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD HSY++LI + KK +A+ + E ++ G++ + ++Y++++D + +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 159 AALSVIDEMVNAGFAP 174
+ D+M+ G P
Sbjct: 440 GPKKIFDKMIATGINP 455
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G N L A++ + ++ GL P+ +++ LI A K +K EA
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETN-GLVPNDWTFSVLIDALCKREKVEEAQLF 339
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
LV GVK N + Y+ L+D AA ++ +M++ GF P
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP 385
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 54/108 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +Y + ++ + + +A + +V GV PN ++Y+ L+ + A
Sbjct: 452 GINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
S + MV G+ P++++ + R V++ +++ + +A D++
Sbjct: 512 FSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQ 559
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +LI K K A + + ++S G P+A SYS L+D + A ++++M+
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414
Query: 169 NAGFAPSKETLKKVRRRCVREMDEESNDRV 198
G S T + VRE+ E ++
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKI 444
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D+A F+ + FG P I SYN L+ AF + K+ + +F + + GV PN +Y++
Sbjct: 95 DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ ++ + A +D M GF P
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKP 182
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY+ +I K K +A +F+ + GV P+ Y++L+D L +D K A
Sbjct: 179 GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238
Query: 161 LSVIDEMV 168
+ + D ++
Sbjct: 239 MELWDRLL 246
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI K KK FE +R F + + G KP+ SYS +++
Sbjct: 144 GVAPNLQTYNVLIKMSCK-KKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDD 202
Query: 160 ALSVIDEMVNAGFAP 174
AL + DEM G AP
Sbjct: 203 ALELFDEMSERGVAP 217
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ LD A T A T ++ +YN L+ F K+ + A+ ++ ++
Sbjct: 573 NILIHGLCSVGKLDDA-MTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMY 631
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
+G++P+ +SY+ ++ R A+ D+ N G P+ T + R V
Sbjct: 632 KMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAVV 685
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHL 132
+I G + ++D+A F + + D+ +YN ++ F GK+K++ E R+ EH
Sbjct: 296 LIHGLCDAGNVDKAESVFNELDERKA-SIDVVTYNTMLGGFCRCGKIKESLELWRIMEHK 354
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+ N +SY++L+ L N A + M G+A K T
Sbjct: 355 NSV----NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTT 396
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A +C+I G L +A + + ++ G+ DI ++++I KL + +A +F+
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVLFSSIINNLCKLGRVMDAQNIFDL 524
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P A+ YS+L+D + + AL V D MV+AG P+
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P Y+ L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 589 LSLFREMLQKGIKPS 603
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ +YN +I F K +A +F+ +V G+ P+ ++YS +V A R A +
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN G P+ T
Sbjct: 276 FLRQMVNKGVLPNNWT 291
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I ++N LI A+ +A +F + GVKPN ++Y+ ++ A A
Sbjct: 389 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDA 448
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G AP K
Sbjct: 449 MEKFNQMIDQGVAPDK 464
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +++A + F+A+ S+ G+ P+ Y L+ + K+ + E +F ++ G+KP+ +
Sbjct: 547 VGKMEKALRVFDAMVSA-GIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 605
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-----RCVRE 189
Y++++D A EM +G A +K T V R RC E
Sbjct: 606 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDE 657
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N VI G D+++A F+ + G+ PD +Y+++++A K + +A
Sbjct: 219 VVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFL 277
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVR 188
+V+ GV PN +Y+ L+ + + K A+ V EM P T + C
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKY 337
Query: 189 EMDEESNDRVEALAKK--------FDIRMNTENRKNILFNL 221
+E+ D + +A K ++I +N K L ++
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ ++N L+ + K K EA VF+ + G P+ SY+++++ + T
Sbjct: 320 ILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 379
Query: 162 SVIDEMVNAGFAP 174
+ D M+ G AP
Sbjct: 380 DLFDLMLGDGIAP 392
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++Y AL+ A K EA ++F + G P+ +Y++++ L ++D A
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EMVN GF+ T
Sbjct: 432 RQLVEEMVNRGFSADAAT 449
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++YN +I + K K EA + + +G PN ++YS L+D + A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221
Query: 161 LSVIDEMVNAGFAPSKET 178
SV D MV+ G P+ T
Sbjct: 222 RSVFDLMVSKGCTPNVYT 239
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI ++ +I + + A ++F ++ + G PN M+Y +L+D + + + A
Sbjct: 267 GLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEA 326
Query: 161 LSVIDEMVNAGFAPS 175
++ EM + P+
Sbjct: 327 FALFQEMQRSTVKPN 341
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I L ++ + EA+G G P++ +Y+ LI + + EA VF+ +VS G
Sbjct: 174 INSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGC 233
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
PN +Y+ L++ + + A+ ++DE + G P T +
Sbjct: 234 TPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTI 278
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q F + + G TP+I +Y L+ K EA +F+ + VKPN + Y++L+
Sbjct: 291 AQQLFRYI-CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILI 349
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
D+ K + +++ G P+ T
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYT 379
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L N ++ V N +I G +LDRA + V S +PD+ +Y ++I
Sbjct: 218 FELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIIS 277
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F KL K AS +FE ++ G++P +++++L+D + AA ++ ++M + P
Sbjct: 278 GFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIP 337
Query: 175 SKETL 179
T
Sbjct: 338 DVVTF 342
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L+ A FE + S G+ P + ++N LI FGK+ A + E + S
Sbjct: 275 IISGFRKLGKLEAASVLFEEMIRS-GIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASY 333
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
P+ ++++ L+D + D + L V D M +P+ T
Sbjct: 334 SCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYT 376
>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 883
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
I DL A F+ + S G+ PD Y ALI K+ EA +F+ ++ G+KP+
Sbjct: 772 CKIGDLKEAKGIFDQMIES-GVDPDAAPYTALIAGCCKMGNLKEAKMIFDLMIESGLKPD 830
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+SY+ L+ N + A +++ EM+ G P++ +L V
Sbjct: 831 FVSYTTLIAGFRRNGFVRKAFTLMKEMLEKGIKPTQASLSAV 872
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 73 INCVILG-----CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
INCVI C + + AY FE + D YN A GKL K EA
Sbjct: 359 INCVIGSSILQCCCQMGNFSGAYDLFEEF-RELNIPLDRVCYNVAFDALGKLGKVEEAIE 417
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F + G+ P+ ++Y+ L+ A ++ EM +G P
Sbjct: 418 LFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGSGKTP 464
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+F + PD+ Y LI K+ EA +F+ ++ GV P+A Y+ L+ + K
Sbjct: 754 AFDVKPDVFYYTVLIDWQCKIGDLKEAKGIFDQMIESGVDPDAAPYTALIAGCCKMGNLK 813
Query: 159 AALSVIDEMVNAGFAP 174
A + D M+ +G P
Sbjct: 814 EAKMIFDLMIESGLKP 829
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ F+++ S GL+PD+ +YN+L+ + K +++EA ++ L S VKP+ +SY+ +++
Sbjct: 615 EIFDSIKQS-GLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVING 673
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
K A ++ EM+ G AP
Sbjct: 674 FCKQGLIKEAQRILSEMIADGMAP 697
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI C +D A FE + + G TP + +YNAL+ FGK EA RV + +
Sbjct: 250 VIAACCRDGLVDEAVAFFEDL-KARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQD 308
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G +P+A++Y+ L + + A +D M + G P+ T V
Sbjct: 309 GCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTV 355
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S GL P+ +YN ++ A+G + K EA +F+ + G PN +Y+ ++
Sbjct: 341 TSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRF 400
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
L ++ EM +G P++ T + C + E+ RV
Sbjct: 401 TVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRV 441
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C+ W+ ++ + S + PD+ SYN +I F K EA R+ +++ G+ P
Sbjct: 642 CSESWEAEKILNQLK----SSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 697
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++Y LV + + A VI+ M+ P + T ++V
Sbjct: 698 CVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRV 740
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G TP+ ++N ++ GK +RV E + S GV+ + +Y+ L+ A+ +
Sbjct: 411 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSR 470
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + +EM +AGFAP T + R+ D
Sbjct: 471 TNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGD 504
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN L + + EA++ + + S G+ PNA +Y+ ++ A+ A
Sbjct: 309 GCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEA 368
Query: 161 LSVIDEMVNAGFAPSKET 178
L++ D+M +G P+ T
Sbjct: 369 LALFDQMKKSGCVPNVNT 386
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ +YN LI A+G+ A +++ + S G P +Y+ L++ D
Sbjct: 447 SCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWS 506
Query: 159 AALSVIDEMVNAGFAPSKET 178
A S++ +M GF P+ ++
Sbjct: 507 TAQSIVSKMRTKGFKPNDQS 526
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAALSV 163
D+ +Y +++A + + A +F L GV P ++Y++++D + R +++
Sbjct: 172 DVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVAL 231
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVRE 189
+DEM AG P T V C R+
Sbjct: 232 LDEMRAAGVEPDDFTASTVIAACCRD 257
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +C+I G LD A Q + + G PD +YN LI GK +A R+F
Sbjct: 289 VVTYSCLITGLIKASQLDEACQVLKKM-EKEGCPPDTITYNTLINGLGKAGLLNDAGRLF 347
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + S G P+ ++YS L+ A ++A + +EM + G P
Sbjct: 348 DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQP 392
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V NC+I L A+ F + G PD +YN+LIY GK+ ++ +A +
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEM-RERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E + G P+ M+YS L+ + + A + EM G P T
Sbjct: 173 EEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSIT 221
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 84 W-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
W ++D A++ + +S GL P SYNALI A K + EA E L G KP+ +
Sbjct: 512 WGNVDEAHELLQ-FANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIV 570
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
SYS L+ A A +++EM G S + + R+
Sbjct: 571 SYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRK 613
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +YNALI FGK+ EA + + + G KP+ ++YS L+ + A
Sbjct: 249 GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEA 308
Query: 161 LSVIDEMVNAGFAP 174
V+ +M G P
Sbjct: 309 CQVLKKMEKEGCPP 322
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
FE ++SV Q P + +I V+ + D DR + G L+PD+
Sbjct: 382 FEEMESVGIQ--------PDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG----LSPDV 429
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+YNA + + G+ + EA ++FE + G+ P+ +Y L+ ++ A ++ E
Sbjct: 430 ITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKE 489
Query: 167 MVNAGFA 173
++ G A
Sbjct: 490 LIEQGCA 496
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P +V N ++ A + A FE + ++ TPD+ SY+ LI + G+ K A
Sbjct: 5 PSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAA-KWTPDVVSYSCLINSLGRAGKWEAA 63
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V + + G KPN +Y+ LVD AL ++ EM + G P T
Sbjct: 64 LEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT 116
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD L+ + + P ++ N +I G L+ A + F+ + S G PD+ +Y
Sbjct: 305 LDEACQVLKKMEKEGCPPDTIT-YNTLINGLGKAGLLNDAGRLFDRMKSK-GCNPDVVTY 362
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+ LI A GK + A +FE + S+G++P+ +Y ++ A + EM
Sbjct: 363 STLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRG 422
Query: 170 AGFAP 174
G +P
Sbjct: 423 KGLSP 427
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY-SLLVDAHLTNRDQKA 159
G PD+ +YN LI GK + EA +F + G P+ +Y SL+ R QK
Sbjct: 109 GCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQK- 167
Query: 160 ALSVIDEMVNAGFAP 174
A+ +++EM G P
Sbjct: 168 AMELLEEMERHGCPP 182
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LE + R P V + +I G + +A++ F+ + G PD ++ AL+ A
Sbjct: 172 LEEMERHGCP-PDVMTYSSLITGLGKDGETVKAFKLFQEM-KRRGRKPDSITFTALMDAL 229
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GK + +A + + + GVKP ++Y+ L+ D A +++DEM G P
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD+ +Y ++I GK + +A R+F + G+ P+ ++Y+ +++ K
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + ++M +G P T
Sbjct: 447 EARKIFEDMKESGLLPDVAT 466
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P +V N ++ G DL+ A + + G+ PD+++Y A I
Sbjct: 267 EMLRRGVQP--TVVTFNTLMSGMCKASDLNNA-NALRGLMAKAGIAPDVYTYGAFIQGLC 323
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
K + +A +FE + G+ PN + + L+DAH D A L + EM G
Sbjct: 324 KTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG 377
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC +LD A + + + S G+ D +Y ALI K ++ +A R+ ++
Sbjct: 423 LIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEA 481
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G++P+ +Y++++DA N D K + EM N G P
Sbjct: 482 GLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPG 521
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +YNAL+ F +++ A+ + E + G+KP+ ++Y+ L+D + A
Sbjct: 377 GVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTA 436
Query: 161 LSVIDEMVNAGFA 173
+ + EM + G A
Sbjct: 437 MEMKQEMSDEGVA 449
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G P I +YN ++ F L + A + ++++GV PN ++Y++L+D H
Sbjct: 517 GKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGH 567
>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
Length = 461
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP V + + +I G D D+AY T+ + G+ PD+ +YN ++ A K + +
Sbjct: 203 PP--DVVSYSTIIDGLFKEGDSDKAYSTYHEM-LERGILPDVVTYNTIVAALCKAQAMDK 259
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A V +V GV P+ ++Y+ +V + ++ K A+ ++++M + G P T
Sbjct: 260 AMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVT 313
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN++++ + ++ EA + E + S GV+P+A++Y+ L+D N A
Sbjct: 271 GVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEA 330
Query: 161 LSVIDEMVNAGFAPS 175
++D M+ G P+
Sbjct: 331 RKILDSMIKRGLKPN 345
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 91 QTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q+ EA+G S G+ PD +Y +L+ K + EA ++ + ++ G+KPN ++YS
Sbjct: 291 QSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350
Query: 146 LLVDAHLTNRDQKAALSVIDEMVN 169
L+ + T ++D M N
Sbjct: 351 TLLHGYATKGALVEMRDLLDLMQN 374
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNR 155
+ G P + SYN L+ ++ EA + + G P+ +SYS ++D
Sbjct: 161 TELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEG 220
Query: 156 DQKAALSVIDEMVNAGFAP 174
D A S EM+ G P
Sbjct: 221 DSDKAYSTYHEMLERGILP 239
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + DLD ++ A+ +S G+ PD+++Y+ LI K K +A+ +
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLAS-GVQPDVYTYSVLINGLCKESKMDDANEL 234
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTN---------------------------------- 154
F+ ++ G+ PN ++++ L+ H N
Sbjct: 235 FDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCK 294
Query: 155 -RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210
D K A +IDEM G P K T + C +E D ++ + + +IR++
Sbjct: 295 KGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLD 351
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A F+A+ + +GL P + SYN L+ + +L E R+ +++ GV+P+ +Y
Sbjct: 157 DIRVAQSVFDAI-TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTY 215
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+L++ A + DEM+ G P+ T
Sbjct: 216 SVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 249
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC DLD A++ + + D+ +Y ALI + ++ +A ++ ++S+
Sbjct: 323 LIDGCCKEGDLDTAFKHRKRMIQGNIRLDDV-AYTALISGLCQEGRSVDAEKMLREMLSV 381
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP+ +Y+++++ D ++ EM G PS T
Sbjct: 382 GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVT 424
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I+G A DL +A + V S GL+ + A+I+A G +T EA +FE +
Sbjct: 274 NDIIVGFAKAGDLSKALEFLGVVQGS-GLSVKTATLVAVIWALGNCGRTVEAEAIFEEMR 332
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KP +Y+ L+ ++ K A V+ EM +G +P+++T
Sbjct: 333 DNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQT 377
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ +++Q + +S G+ PD YN +I FGK A F+ ++S G++P+ +++
Sbjct: 425 EWQKSFQVLREMENS-GVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTW 483
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+D H A + +EM+ G++P T
Sbjct: 484 NTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTT 517
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DRA + FE + G +P ++N +I +FG ++ + + H+ S G+ PN+++Y+
Sbjct: 497 DRAEELFEEMMEG-GYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTT 555
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+D + + A+ +D+M AG PS
Sbjct: 556 LIDIYGKSGRFNDAIECLDDMKAAGLKPS 584
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + + N+LI AFG+ ++ EA V +++ +KP+ ++Y+ L+ A +
Sbjct: 615 GLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKV 674
Query: 161 LSVIDEMVNAGFAPSKETLKKVR 183
SV +EM+ +G P ++ +R
Sbjct: 675 PSVYEEMILSGCTPDRKARAMLR 697
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 81 ANIWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
A IW L +T EA GL P +YNAL+ + K +A V +
Sbjct: 310 AVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERS 369
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN +YS L+DA+ ++A V+ EM + P+ ++
Sbjct: 370 GVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRI 416
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ +Y+ LI A+G + A V + + + V+PNA +S ++ ++ + + +
Sbjct: 370 GVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKS 429
Query: 161 LSVIDEMVNAGFAPSK 176
V+ EM N+G P +
Sbjct: 430 FQVLREMENSGVRPDR 445
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P YNALI A+ + + +A F + G+KP+ ++ + L++A +R A
Sbjct: 580 GLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEA 639
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
+V+ M P T + + +R E D+V ++ ++ + T +RK
Sbjct: 640 FTVLQYMKENDLKPDVVTYTTLMKALIR---VEKFDKVPSVYEEMILSGCTPDRK 691
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P+ +Y LI +GK + +A + + + G+KP++ Y+ L++A+ +
Sbjct: 543 SQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSE 602
Query: 159 AALSVIDEMVNAGFAPS 175
A+S M G PS
Sbjct: 603 QAVSAFRAMRVDGLKPS 619
>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 827
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
HS+N +IY F K + FEA +V E + S G+ P+ SYS+L++A D L +++E
Sbjct: 392 HSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEE 451
Query: 167 MVNAGFAPS 175
M ++ PS
Sbjct: 452 MEHSQIKPS 460
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + +I G A + RA F + G+T +I +Y L+ F K EA +
Sbjct: 635 SVVNYSTLISGFAKQSNFKRAVNLFTRM-VKVGITFNIATYTILMSIFSHSHKMHEAYGI 693
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + G+ + +SY+ L+ NR+ K A ++ +EM G +P+
Sbjct: 694 FKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPN 740
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I+G N ++ +A+ FE + S G +P++ +Y +I F K + A+ VF+ +
Sbjct: 712 LIVGFCNNREMKKAWALFEEM-SREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRD 770
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V P+ ++Y++L+D + + A + D M + G P T
Sbjct: 771 SVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDIT 813
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+ NL P S + N VI G ++ A Q E + SS G+ PD++SY+ LI AF
Sbjct: 379 IRNLHYTNQPLNS-HSFNDVIYGFCKRGEVFEALQVLEEMKSS-GILPDVYSYSILINAF 436
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ + E + +KP+ +SY+ L+
Sbjct: 437 CGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHG 470
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
F L P HSYNA+IY K A + ++ V P+ ++YS L+ + K
Sbjct: 596 GFNLNP--HSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFK 653
Query: 159 AALSVIDEMVNAG 171
A+++ MV G
Sbjct: 654 RAVNLFTRMVKVG 666
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
+++Y E L PP N +I G + +DRA++ F+ + SFG PD+ +YN
Sbjct: 161 EAIYLFKEYLVMQSPP--DTWTFNILIRGLCRVGGVDRAFEVFKDM-ESFGCLPDVVTYN 217
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
LI K + +F+ + S P+ ++Y+ ++ + K A ++ +EM+
Sbjct: 218 TLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMR 277
Query: 170 AGFAPS 175
+G P+
Sbjct: 278 SGIQPN 283
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G ++ R + F+ + S +PDI +Y ++I F K K EAS +F
Sbjct: 213 VVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLF 272
Query: 130 EHLVSLGVKPNAMSYSLLVDA 150
E ++ G++PN +++++L+D
Sbjct: 273 EEMMRSGIQPNVITFNVLIDG 293
>gi|440800964|gb|ELR21990.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 476
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+A N +I D+A+ + + + G+ PD +Y L+ A K + EA +
Sbjct: 184 SIATHNVIINQFVKHGQFDQAFAYYAGLHARHGVKPDELTYTPLMQASIKRGRPDEAIEL 243
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG--------FAPSKETLK 180
F+ L G++PN YSLLV A + + A++ +DEM G F +K L
Sbjct: 244 FDALKRSGLQPNVQHYSLLVQARAEKNEFERAVAQLDEMAAGGVEVDDRLYFDYAKALLD 303
Query: 181 KVRRRCVREMDEESNDRVEALAKKFD 206
+ R VREM + R+E + ++ D
Sbjct: 304 RGR---VREMADVCA-RMERVGQRLD 325
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV ++N ++ + F+ S FG+ P++ + N LI A K A +
Sbjct: 154 RSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARK 213
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET--------L 179
VF+ + S+G+ PN ++Y+ ++ +++ D A V E+ + G+ P T +
Sbjct: 214 VFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYV 273
Query: 180 KKVR-RRCVREMDEESNDRVE 199
K+ R V+ MDE + VE
Sbjct: 274 KQGRFTDAVKVMDEMEENGVE 294
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
NIW+ + + FE G + +YN LI ++ + EA+R+++ ++ G PN
Sbjct: 381 GNIWEARKLFNEFER-----GTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPN 435
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+Y++L+ L K + V++EM++ G
Sbjct: 436 EFTYNMLIKGFLKVGKAKEVIKVVEEMLDKG 466
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + F+ + S G+ P++ +Y ++ + A RVF L G P+A +Y
Sbjct: 207 DVEGARKVFDEM-PSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTY 265
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++L+D ++ A+ V+DEM G P+ T
Sbjct: 266 TILMDGYVKQGRFTDAVKVMDEMEENGVEPNDIT 299
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +Y L+ + K + +A +V + + GV+PN ++Y +++ + R A
Sbjct: 257 GWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEA 316
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
L+++++M+ + P+ KV
Sbjct: 317 LNLLNDMLEKKYIPNSALCCKV 338
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKGFETLDSVYFQLENL 60
G LQ+A + E M+ + + L+ AC S + F+T S+Y ++E
Sbjct: 267 GKLQKAMEKFRDME---------MKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEER 317
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
PP+ + + VI G AY FE + G ++ Y ALI ++ K
Sbjct: 318 GLEIPPH----SYSLVIGGLCKQRKCMEAYAVFETMNQK-GCRANVAIYTALIDSYSKNG 372
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
EA R+FE + + G +P+A++YS+LV+ + + + D N G A
Sbjct: 373 SMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 425
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL HSY+ +I K +K EA VFE + G + N Y+ L+D++ N + A
Sbjct: 318 GLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEA 377
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + + M N GF P T
Sbjct: 378 MRLFERMKNEGFEPDAVT 395
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ N ++ G N ++ A + FE + + PD +YN +I + K K +A
Sbjct: 217 SLYTYNFLVNGLVNSMFIESAEKVFEVMDGG-KIVPDTVTYNIMIKGYCKAGKLQKAMEK 275
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
F + VKP+ ++Y L+ A + RD LS+ EM G
Sbjct: 276 FRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGL 319
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++ A FE + S G D + YNA+I A K K +A +F +
Sbjct: 434 LIDGLGKAGRIEDAENLFEEM-SEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEE 492
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G ++++L+D + A+ D+M++ G P+
Sbjct: 493 GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPT 532
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D AY+ + ++ G+ PD+ +Y+ LI + EA V + ++ G +PNA +Y+
Sbjct: 150 DAAYEVVRWMAAN-GVAPDVVTYSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTP 208
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ A+ T+ A +++ MV AGFAPS T
Sbjct: 209 ILHAYCTSGMIHEAKDLLETMVAAGFAPSTAT 240
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +YN L+ A K E ++ E + G P+ ++YS +D N +
Sbjct: 233 GFAPSTATYNVLVEALCKACAFEEVDKLLEESSAKGWTPDTITYSTYMDGLCKNGRVDKS 292
Query: 161 LSVIDEMVNAGFAPSKETL 179
L+++D+M++ G P++ TL
Sbjct: 293 LALVDKMLSVGLRPNEITL 311
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
++ +YN LI L K+ EA + ++ G+ PN ++YSLL+D ALS +
Sbjct: 409 NVVTYNTLIRHLNFLGKSCEAYLLLHEMIEKGIAPNDITYSLLIDCLCKEGKFLVALSCL 468
Query: 165 DEMVNAGFAPSKETLKKVRR 184
++ + G SK + + R
Sbjct: 469 NQCIEGGL--SKAAVSSILR 486
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-LGVKPNAMSY 144
+D A + F+ + +G P +YN LI FG + +E+ ++ E + VKPN +Y
Sbjct: 108 VDEAMKIFQKM-KEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTY 166
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
++L+ A T + + A +V+ +MV +G P T + R + + E +R+
Sbjct: 167 NILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERL 220
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 88 RAYQT---FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
R Y++ E +G + P+ +YN LI A+ KK EA V +V+ G++P+ ++Y
Sbjct: 142 RPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTY 201
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + A+ N + + A +I +M P++ T
Sbjct: 202 NTMARAYAQNGETERAERLILKMPYNIVKPNERT 235
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 8/181 (4%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQ---LENLSRAEPPYKSVAAINCVILGCANIWDLD 87
P TS Y ++ KGF Y LE + + E + N +I L+
Sbjct: 125 PTTSTYNTLI----KGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLE 180
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A+ + +S G+ PD+ +YN + A+ + +T A R+ + VKPN + ++
Sbjct: 181 EAWNVLHKMVAS-GIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGII 239
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207
+ + + AL + M G P+ + + + D D L ++F I
Sbjct: 240 ISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGI 299
Query: 208 R 208
+
Sbjct: 300 K 300
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ PD+ +++ ++ A+ +F +V G++P+ +YS+L ++ +
Sbjct: 297 FGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRK 356
Query: 160 ALSVIDEMVNAGFAPS 175
A +++ M G P+
Sbjct: 357 AEALLTSMSKYGVQPN 372
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDIH+Y+ L + + + +A + + GV+PN + ++ ++ A
Sbjct: 333 GIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRA 392
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++M G +P+ +T
Sbjct: 393 FRLCEKMHEMGTSPNLKT 410
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+ PD NA+I AF + K EA ++F+ + G KP +Y+ L+
Sbjct: 87 GMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKG 136
>gi|356516061|ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Glycine max]
Length = 632
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 64 EPPYK---SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
EPP + ++ + N ++ G + A + F +G G +PD S+N LI
Sbjct: 336 EPPKRLSVNLGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLSFNNLIERLCDNG 395
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ EA V+ + GV P+ +Y LL+DA + + +MV++G P+
Sbjct: 396 RIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDSAAYFRKMVDSGLRPN 450
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD AY F+ + SS PD +YN LI+ +L EA R+ + + LG PN +Y+
Sbjct: 245 LDLAYLKFQQM-SSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYT 303
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR---RCV 187
+L+D + A V+ M P++ T++ + RC+
Sbjct: 304 ILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCI 348
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V N +I I D+ R+ + G+ PD S+NALI + + +
Sbjct: 576 PP--NVITYNILICSFCAIGDVSRSTHLLRQM-KLHGIQPDTFSFNALIQGYTGKNRFQK 632
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A ++F+ ++ LG++P+ +Y L+ + + A + M G P T
Sbjct: 633 AEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 686
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 13 EFETAYGDSIID---MEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL-SRAEPPYK 68
E Y D +I+ + I+S Y +V+ C KG +++D +L +R P
Sbjct: 456 EIGNRYMDRLINDGLISNIYS-----YNMVIDCLCKG-KSMDRASEMFRDLHNRGISP-- 507
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G ++D+A + E + S PDI ++N+LI + K A
Sbjct: 508 NIVTYNTLIGGFCRNGNMDKAQELLEMLLES-RFRPDIFTFNSLIDGLCQAHKHENAFGC 566
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F +V V PN ++Y++L+ + D + ++ +M G P
Sbjct: 567 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQP 612
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
Y I+C+ G + +DRA + F + + G++P+I +YN LI F + +A
Sbjct: 475 YSYNMVIDCLCKGKS----MDRASEMFRDLHNR-GISPNIVTYNTLIGGFCRNGNMDKAQ 529
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ E L+ +P+ +++ L+D + A EMV P+
Sbjct: 530 ELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPN 578
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A +E + + GLTPD +Y+ +I GK A R+F +V G PN ++Y+
Sbjct: 465 LDVAMGMYEKMQDA-GLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYN 523
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++ R+ + AL + +M +GF P K T
Sbjct: 524 IMIALQAKARNYEIALKLYRDMQQSGFEPDKVT 556
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN +I+++G+ +A VF+ + G +P+ ++Y L+D H + A
Sbjct: 409 GCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVA 468
Query: 161 LSVIDEMVNAGFAP 174
+ + ++M +AG P
Sbjct: 469 MGMYEKMQDAGLTP 482
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ +A++ + A+ + GL P++ + N+L+ AF ++ + +A ++ + +++ G+KP+ +Y
Sbjct: 604 NVQKAWEWYHAMLKA-GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTY 662
Query: 145 SLLV 148
+LL+
Sbjct: 663 TLLL 666
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT------ 103
++SV L+ L +++ +NC I L R A+G + L
Sbjct: 317 VESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGFFYWLKRLPRFR 376
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
D H+Y +I G+ K+ +++ + ++ G +PN ++Y+ ++ ++ + A++V
Sbjct: 377 HDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNV 436
Query: 164 IDEMVNAGFAPSKET 178
+M AG P + T
Sbjct: 437 FKQMQEAGCEPDRVT 451
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD Y L+ +GK +A + ++ G+KPN + + L+ A L A +
Sbjct: 587 PDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQL 646
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196
+ M+ G PS +T + C D ++ND
Sbjct: 647 LQSMLTFGLKPSLQTYTLLLSCCT---DAQTND 676
>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
Length = 526
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
E P + Y V+ C D E ++ P S A NC + D
Sbjct: 330 ERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVAEGVCP--SPATYNCFLKEYRGRKD 387
Query: 86 LDRAYQTFEAVGSSFGLT-PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ A + + + + LT PDIH+YN L+ F KL + ++ + V P+ SY
Sbjct: 388 VTAALELYNKMKAPGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSY 447
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDE 192
+LL+ ++ + A EM+ GF P K T + + RR R +DE
Sbjct: 448 TLLIHCFCDSQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDE 507
Query: 193 ES 194
E+
Sbjct: 508 EA 509
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A +C+I G L +A + + ++ G+ DI ++++I KL + +A +F+
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P A+ YS+L+D + + AL V D MV+AG P+
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI+++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 389 GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 448
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G AP K
Sbjct: 449 MEKFNQMIDQGVAPDK 464
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P Y+ L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 589 LSLFREMLQKGIKPS 603
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +++A + F+A+ S+ G+ P+ Y L+ + K+ + E +F ++ G+KP+ +
Sbjct: 547 VGKMEKALRVFDAMVSA-GIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 605
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-----RCVRE 189
Y++++D A EM +G A +K T V R RC E
Sbjct: 606 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDE 657
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ +Y+ +I F K +A +F+ +V G+ P+ ++YS +V A R A +
Sbjct: 216 SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN G P+ T
Sbjct: 276 FLRQMVNKGVLPNNWT 291
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A + VI G D+++A F+ + G+ PD +Y+++++A K + +A
Sbjct: 219 VVAYSTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFL 277
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVR 188
+V+ GV PN +Y+ L+ + + K A+ V EM P TL + C
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337
Query: 189 EMDEESNDRVEALAKK 204
+E+ D + +A K
Sbjct: 338 GKIKEARDVFDTMAMK 353
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ A + F+ + + PD+ + + L+ + K K EA VF+ +
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEM-RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 351
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G PN SY+++++ + T + D M+ G AP
Sbjct: 352 MKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN LIY + + EA RVF+ + + P+ ++ S+L+ + K A
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343
Query: 161 LSVIDEMVNAGFAPS 175
V D M G P+
Sbjct: 344 RDVFDTMAMKGQNPN 358
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 4/157 (2%)
Query: 28 IFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
+ SP + Y +++ C + ++ F L R + A N ++ G D
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAF-FGQLLRTGLRVNIIIA-NHLLKGFCEAKRTD 163
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYS 145
A G PD+ SY+ L+ + K+ +A + + G P+ ++YS
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYS 223
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++D D A + EMV G P T V
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV 260
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A +E + + GLTPD +Y+ +I GK A R+F +V G PN ++Y+
Sbjct: 465 LDVAMGMYEKMQDA-GLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYN 523
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++ R+ + AL + +M +GF P K T
Sbjct: 524 IMIALQAKARNYEIALKLYRDMQQSGFEPDKVT 556
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN +I+++G+ +A VF+ + G +P+ ++Y L+D H + A
Sbjct: 409 GCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVA 468
Query: 161 LSVIDEMVNAGFAP 174
+ + ++M +AG P
Sbjct: 469 MGMYEKMQDAGLTP 482
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ +A++ + A+ + GL P++ + N+L+ AF ++ + +A ++ + +++ G+KP+ +Y
Sbjct: 604 NVQKAWEWYHAMLKA-GLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTY 662
Query: 145 SLLV 148
+LL+
Sbjct: 663 TLLL 666
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT------ 103
++SV L+ L +++ +NC I L R A+G + L
Sbjct: 317 VESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGFFYWLKRLPRFR 376
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
D H+Y +I G+ K+ +++ + ++ G +PN ++Y+ ++ ++ + A++V
Sbjct: 377 HDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNV 436
Query: 164 IDEMVNAGFAPSKET 178
+M AG P + T
Sbjct: 437 FKQMQEAGCEPDRVT 451
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G LD A Q E + + +G+ PD+ +YN+++ K K E + FE ++
Sbjct: 459 NTLIDGYCKRLKLDSALQLVERMWT-YGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G +PNA++Y++L++ + A VI M G P
Sbjct: 518 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVP 558
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G DLD AY F+ + G + ++N LI A+ A ++F ++
Sbjct: 564 NTLIHGFCRNGDLDGAYLLFQKLDEK-GYSATADTFNILIGAYSSKLNMQMAEKIFGEMI 622
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
S G KP+ +Y +LVD + A + + EM++ GF PS T ++
Sbjct: 623 SKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRM 671
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 82 NIW--------DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NIW L+ A E +G+ + PD+ +YN L+ K K EA++ ++
Sbjct: 250 NIWIRGLCEDGRLEEAVALVERMGAY--VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMM 307
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G P+ +Y+ ++D + + + A ++ + V GF P + T
Sbjct: 308 NQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVT 352
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN +I K+ +A+ V + G P+ +++ L+D + +A
Sbjct: 415 GCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSA 474
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
L +++ M G AP T V
Sbjct: 475 LQLVERMWTYGIAPDVITYNSV 496
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD S+N LI+ F + A +F+ L G A ++++L+ A+ + + + A
Sbjct: 555 GLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMA 614
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
+ EM++ G+ P T + V C +D E ++K F M T R L
Sbjct: 615 EKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNL 674
Query: 219 FNLEYSASYA 228
+ + S A
Sbjct: 675 LAMNHRVSEA 684
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N V+ G +TFE + G P+ +YN LI F K+ + EAS V
Sbjct: 490 VITYNSVLNGLCKAGKAKEVNETFEEMILK-GCRPNAITYNILIENFCKINQLEEASGVI 548
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G+ P+A+S++ L+ N D A + ++ G++ + +T
Sbjct: 549 VRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADT 597
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV + +I C + A Q FE + G P++ SYN+LI A + + +A+
Sbjct: 464 RSVITYSSLISACEKAGEWKLALQLFEEMRGE-GCVPNVISYNSLITACAQGAQWEKAAE 522
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
VFE + G +P+ +SY+ L+ A+ + AL+ +EM+ A
Sbjct: 523 VFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRA 565
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P ++N L+ A + EA RV+E + + PN +Y+ L+ AH D L
Sbjct: 392 IQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVL 451
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRC 186
+V EMV G S T + C
Sbjct: 452 AVFKEMVQKGCERSVITYSSLISAC 476
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 74 NCVILGC--ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
N +++ C +N W A + +E + +S P+ +YNALI A K + VF+
Sbjct: 400 NTLMIACNTSNQWQ--EALRVYEQMAAS-SHPPNTTTYNALISAHSKGGDLPKVLAVFKE 456
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+V G + + ++YS L+ A + K AL + +EM G P+
Sbjct: 457 MVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPN 500
Score = 36.6 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 27 EIFSPFTSLY-PLVVAC--SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E P T + L++AC S + E L VY Q+ + + PP + N +I +
Sbjct: 390 ERIQPVTRTFNTLMIACNTSNQWQEAL-RVYEQMA--ASSHPP--NTTTYNALISAHSKG 444
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
DL + F+ + G + +Y++LI A K + A ++FE + G PN +S
Sbjct: 445 GDLPKVLAVFKEMVQK-GCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVIS 503
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+ A + A V ++M G P
Sbjct: 504 YNSLITACAQGAQWEKAAEVFEQMQRQGCRP 534
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N V+ G A ++++A + ++ + S G PD SY+ LI+ K+ K E+ ++
Sbjct: 45 VFAFNGVMQGFARSNNMEKAREVYQHMVES-GYKPDNVSYHILIHGLAKIGKLDESLKIL 103
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+V G P+ +YS LV A R A S+ DEM+ G P +
Sbjct: 104 SEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDR 150
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + L++A F + S +PD+ +YN L+ A K ++ E ++
Sbjct: 184 NVPVYNVLLHGLCSSGQLEQANTLFAEM-KSHSCSPDVVTYNTLLDAVCKARRVEEGCKL 242
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
FE + + G PN +++S L+ + + AL V M+ AG P+K T
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYT 292
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+ +Y+ E + ++ G PD+ ++N ++ F + +A V++H+V G KP+ +SY +
Sbjct: 27 EESYKVLEEMMAA-GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 85
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKE-------TLKKVRR 184
L+ +L ++ EMV G PS + L K RR
Sbjct: 86 LIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
RA +V + +I G +L++A + F ++ + G P+ ++Y LI + +K
Sbjct: 247 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA-GCKPNKYTYTTLISGLCRAEK 305
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV-NAGFAPS 175
+A +FE + + P+A++Y+ L+ + A + EM AG P+
Sbjct: 306 VIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT 360
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+ILG + A + F+ + G P++ YN L++ + +A+ +F + S
Sbjct: 156 LILGLCQAGKVKDASERFKQM-PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH 214
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P+ ++Y+ L+DA R + + + M AG+ P+
Sbjct: 215 SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPN 254
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D ++YNALI A K +T +A +F+ L + G+KPNA++++ L++ + A
Sbjct: 424 GLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIA 483
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILF 219
+++MV+AG P T + C + +E + + +K D++ +T N ++
Sbjct: 484 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIH 542
Query: 220 NLEYSASYA 228
L +Y
Sbjct: 543 KLLKERNYG 551
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D A++ E + S+ G TPD ++Y++ I K+K + E ++
Sbjct: 468 NSLINGLCKSGKADIAWKFLEKMVSA-GCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 526
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-LKKVRRRCVREMDE 192
VKP+ ++Y++++ L R+ EMV++G P T +R C+
Sbjct: 527 QKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 586
Query: 193 ESNDRVEALAK 203
E+ + + ++K
Sbjct: 587 EAENVLMEMSK 597
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+H Y AL+ ++ E + + LG +P+ +Y+ +VD R K A +
Sbjct: 252 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 311
Query: 164 IDEMVNAGFAPSKETLKKV 182
+ EM G AP T V
Sbjct: 312 LQEMFEKGLAPCVVTCTAV 330
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + + A+I A+ K + +A RV E + G KPN +Y+ LV A
Sbjct: 319 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKA 378
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCV 187
++++++M G P T +R +C+
Sbjct: 379 MTLLNKMRACGVNPDAVTYNLLIRGQCI 406
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNAL+ F K +A + + + GV P+A++Y+LL+ + ++A
Sbjct: 354 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 413
Query: 161 LSVIDEMVNAGFAPSKET 178
++ M G + T
Sbjct: 414 FRLLRLMEGDGLIADQYT 431
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +Y + A+ + EA V + GV + M+Y+ L+D H +
Sbjct: 562 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 621
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A+S++ +M + P++ T + R VR
Sbjct: 622 HAVSILKQMTSVASVPNQFTYFILLRHLVR 651
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 59 NLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
++ R PP + N VI DL RA + + S G PD +++N+LI + +
Sbjct: 142 HMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRS-GWRPDAYTFNSLIVGYCR 200
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ A +F+ + G + +SY+ L++
Sbjct: 201 TNQVDVARDLFDKMPLRGFAQDVVSYATLIEG 232
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFE 130
N VI G I L +A + + ++GL P + +YN+LI + G + + +
Sbjct: 195 NTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V G+ P A+++ +L++ + N + AA+ V +EM G A S T
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVT 301
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 67 YKSVAAINCVILGCANIWDLDRAY-QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
Y S+ C G N++ +D + EA G++P ++ LI + K T A
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEA-----GISPTAVTFGVLINGYCKNSNTAAA 283
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
RVFE + G+ + ++Y+ L+ + + + +++EM + G +P++ T V +
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343
Query: 186 -CVREMDEESNDRVEALAKK 204
C + M ++ND ++ + ++
Sbjct: 344 FCKKGMMADANDWIDGMTER 363
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++ +YN LI F + AS + + + G++ + ++Y++L+ A + + A
Sbjct: 399 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKA 458
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++DEM G P+ T
Sbjct: 459 VKLLDEMSEVGLEPNHLT 476
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ Y LI + +L K +A V E + G+ PN +Y+ L+ + D ++A +
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 164 IDEMVNAGF 172
+DEM G
Sbjct: 427 LDEMKEKGI 435
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I G + ++ + E + GL+P+ ++ ++ F K +A+
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEM-EDLGLSPNEITFGCVLKGFCKKGMMADANDW 356
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + V+P+ + Y++L+D + + A++V + M G +P+ T
Sbjct: 357 IDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTT 406
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V NC+I G + D A + + G+ D+ +YN LI A + +A ++
Sbjct: 403 NVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVRKAVKL 461
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ + +G++PN ++Y+ ++ + K+A + M
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
D RAF + EF +I D++++ L V C RK + ++ ++++ +
Sbjct: 162 DAIRAFDRMVEF--GLKPTIDDLDQL---------LYVLCKRKHAKHAQQIFDRVKHQFQ 210
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ ++ G +I + A + F+ + D+ +YN+L+ AF K K
Sbjct: 211 TRAKTYSI-----LVRGWGDIGESVSACKVFDEMREQ-QCAVDVLAYNSLLEAFCKGGKV 264
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK-K 181
EA ++F + S G+KP+A ++S+ + A+ D A V+DEM P+ T
Sbjct: 265 SEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCM 324
Query: 182 VRRRCVREMDEES 194
+++ C +E EE+
Sbjct: 325 IKKLCKKEKVEEA 337
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ AY+ + + + L P++ +YN +I K +K EA ++ ++ +P+A SY
Sbjct: 298 DIHLAYRVLDEM-KRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSY 356
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ ++ H + + +A +I MV P K + + + +R
Sbjct: 357 NAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIR 400
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALS 162
PD HSYN L+ ++ + A V+E + G P+ +YS++V + + + A
Sbjct: 386 PDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACK 445
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCV 187
+ M++ G P T++ +R R +
Sbjct: 446 YFEMMIDEGIPPYSSTVEILRNRLI 470
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFE 130
N VI G I L +A + + ++GL P + +YN+LI + G + + +
Sbjct: 195 NTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V G+ P A+++ +L++ + N + AA+ V +EM G A S T
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVT 301
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 67 YKSVAAINCVILGCANIWDLDRAY-QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
Y S+ C G N++ +D + EA G++P ++ LI + K T A
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEA-----GISPTAVTFGVLINGYCKNSNTAAA 283
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
RVFE + G+ + ++Y+ L+ + + + +++EM + G +P++ T V +
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343
Query: 186 -CVREMDEESNDRVEALAKK 204
C + M ++ND ++ + ++
Sbjct: 344 FCKKGMMADANDWIDGMTER 363
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++ +YN LI F + AS + + + G++ + ++Y++L+ A + + A
Sbjct: 399 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKA 458
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++DEM G P+ T
Sbjct: 459 VKLLDEMSEVGLEPNHLT 476
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ YN LI + +L K +A V E + G+ PN +Y+ L+ + D ++A +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 164 IDEMVNAGF 172
+DEM G
Sbjct: 427 LDEMKEKGI 435
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V NC+I G + D A + + G+ D+ +YN LI A + +A ++
Sbjct: 403 NVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVRKAVKL 461
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ + +G++PN ++Y+ ++ + K+A + M
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 36 YPLVVACSRKGFE----TLDSVYFQLENLSRAEPPY------KSVAA-INCVIL-----G 79
Y L+ KG + T SV L + R + Y KS+ +N VI G
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
+ +D AY E + GLTP+ +++N L+ A K ++ EA F+++ +L P
Sbjct: 702 FGKVGRIDEAYLILEELMQK-GLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSP 760
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
NAM+YS++++ R A EM G P+ T
Sbjct: 761 NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNIT 799
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ +L+R+ P V A N +I+G + D AY E G P + +YN ++
Sbjct: 331 FEELDLNRSVP---CVYAYNTMIMGYGSAGKFDEAYSLLERQKRK-GCIPSVIAYNCILT 386
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ K EA R+ + + PN +Y++L+D + +AAL V D M AG P
Sbjct: 387 CLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFP 445
Query: 175 SKETLK-KVRRRC-VREMDE 192
+ T+ + R C +++DE
Sbjct: 446 NIMTVNIMIDRLCKAQKLDE 465
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++ FE + + GL PD+ SY+ LI+ K + E ++F + G+ + ++Y
Sbjct: 567 EVEKGRALFEEIKAQ-GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ ++D + A +++EM G P+ T V
Sbjct: 626 NTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSV 663
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D ++YNALI A K +T +A +F+ L + G+KPNA++++ L++ + A
Sbjct: 282 GLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIA 341
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILF 219
+++MV+AG P T + C + +E + + +K D++ +T N ++
Sbjct: 342 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-DVKPSTVNYTIVIH 400
Query: 220 NLEYSASYA 228
L +Y
Sbjct: 401 KLLKERNYG 409
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+H Y AL+ K + E + + LG +P+ +Y+ +VD R K A +
Sbjct: 110 PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEM 169
Query: 164 IDEMVNAGFAPSKETLKKV 182
+ EM G AP T V
Sbjct: 170 LQEMFEKGLAPCVVTCTAV 188
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G +D A++ E + S+ G TPD ++Y++ I K+K + E ++
Sbjct: 326 NSLINGLCKSGKVDIAWKFLEKMVSA-GCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 384
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-LKKVRRRCVREMDE 192
VKP+ ++Y++++ L R+ EMV++G P T +R C+
Sbjct: 385 QKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 444
Query: 193 ESNDRVEALAK 203
E+ + + ++K
Sbjct: 445 EAENVLMEMSK 455
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + + A+I A+ K + +A RV E + G KPN +Y+ LV A
Sbjct: 177 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKA 236
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCV 187
++++++M G P T +R +C+
Sbjct: 237 MALLNKMRVCGVNPDAVTYNLLIRGQCI 264
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YNAL+ F K +A + + GV P+A++Y+LL+ + ++A
Sbjct: 212 GCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESA 271
Query: 161 LSVIDEMVNAGFAPSKET 178
++ M G + T
Sbjct: 272 FRLLRLMEGDGLIADQYT 289
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +Y + A+ + EA V + GV + M+Y+ L+D H +
Sbjct: 420 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 479
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A+S++ +M + P++ T + R VR
Sbjct: 480 HAVSILKQMTSVASVPNQFTYFILLRHLVR 509
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P ++N LI A+G+ +A+++++ ++ G P A +Y+ L++A D KAA
Sbjct: 508 GFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAA 567
Query: 161 LSVIDEMVNAGFAPSKET 178
SV+ +M N GF P++ +
Sbjct: 568 ESVLLDMRNKGFKPNETS 585
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A Q F + S G P++ +YN+++ GK ++ E ++ + G PN ++++ L
Sbjct: 426 KALQLFNQMKKS-GCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTL 484
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKE---TLKKVRRRCVREMD 191
+ K V EM N GF P K+ TL RC E+D
Sbjct: 485 LAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELD 531
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
+RA + + + S GL PD+ +YN+L+ + + + ++A + + L+ G P+ +SY+
Sbjct: 670 ERAQKMLDLIRES-GLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNT 728
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ + A+ V+ EM G P
Sbjct: 729 IIKGFCRQGLMQEAIRVMSEMTTRGICP 756
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 4 LQRAFITLNEFETAYG------DSIIDM-EEI------FSPFTSLYPLVVACSRKGFETL 50
L + +T N YG D I+D+ +E+ F FT ++ AC R+G
Sbjct: 263 LSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTC-STVISACGREGLINE 321
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
+F S EP + A+ + G A I+ A + + + T D +YN
Sbjct: 322 AKEFFVELKSSGYEPGTVTYNAL-LQVFGKAGIYS--EALNILKEMEDN-NCTLDSVTYN 377
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
L+ A+ + E + V + + GV PNA++Y+ +++A+ + AL + ++M +
Sbjct: 378 ELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKS 437
Query: 171 GFAPS 175
G P+
Sbjct: 438 GCVPN 442
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAALSV 163
D+ + +++A+ + K +A +FE + G+ P+ ++Y++++D + R L +
Sbjct: 231 DVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDL 290
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVRE 189
+DEM N G + T V C RE
Sbjct: 291 LDEMRNEGLQFDEFTCSTVISACGRE 316
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ ++N L+ G K + VF + + G +P +++ L+ A+ + A
Sbjct: 473 GCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDA 532
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
+ DEM+ AGF P T + R D ++ + V
Sbjct: 533 AKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESV 570
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
++ G+ P I +YN + + E V +++ KPN ++Y ++VD + R
Sbjct: 750 TTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKY 809
Query: 158 KAALSVI 164
+ A+ I
Sbjct: 810 QDAMDFI 816
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P ++ N +I G + D D A + E + ++ G PD SY LI F K+ K A
Sbjct: 466 PTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKAN-GCQPDEWSYTELISGFCKISKMELA 524
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S +F ++ G+ PN ++Y+ L+ + + A +++ M +G P+ +T
Sbjct: 525 SGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQT 577
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + VI G N + A + F + G P++H+Y++LI A G+ + EA +F
Sbjct: 610 VVTYSTVINGLCNNGAIPLALEMFNKM-VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMF 668
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
L G+ P+ ++Y +++ + + A + EM+NAG P+ +T
Sbjct: 669 SELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQT 717
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+DR +Q GL P++ YN++I A K +A + + G+KP+ +Y+
Sbjct: 213 MDRYHQILRE-----GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYT 267
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + NRD +A + + M G P+ T
Sbjct: 268 SMILGYCRNRDLDSAFEIFNRMDEEGCEPNAAT 300
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y ++I + + + A +F + G +PNA +YS L++ + A
Sbjct: 258 GMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEA 317
Query: 161 LSVIDEMVNAGFAPSKET 178
L I EM G P+ T
Sbjct: 318 LDFISEMTRHGVLPTVHT 335
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LDS F++ N E + A + +I G N ++ A F + + G+ P +H++
Sbjct: 279 LDSA-FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALD-FISEMTRHGVLPTVHTF 336
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
A I A + + +A ++F + G KPN +Y+ L+ R + A+ + M
Sbjct: 337 TAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ---RVSRMAIGLFHRMSR 393
Query: 170 AGFAPSKET 178
G P+ T
Sbjct: 394 DGVVPNTVT 402
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G P++ +YN LI+ K A + + ++ + P+ ++YS
Sbjct: 556 LDCAARMLERMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYS 614
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++ N AL + ++MV G P+ T
Sbjct: 615 TVINGLCNNGAIPLALEMFNKMVKHGCLPNLHT 647
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 46 GFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ---TFEAVGSSFGL 102
G +T V +L SR P A I+ +I C+N ++ +A F G GL
Sbjct: 136 GPDTFAKVAMRLLE-SRDRPAAVGRARIH-MIKSCSNKAEMTQALNYLDMFSQRGPKMGL 193
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+Y L+ KL T + ++ G++PN + Y+ +++A + + + A S
Sbjct: 194 ----FTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAES 249
Query: 163 VIDEMVNAGFAP 174
+I+++ +G P
Sbjct: 250 IINKVFKSGMKP 261
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YNAL+ + + A VF + G PN SY+ L+ + T D + A
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKA 454
Query: 161 LSVIDEMVNAGFAPS 175
+S++ M+ P+
Sbjct: 455 MSMLTNMLKGRPTPT 469
>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 867
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ YN ++ A ++K A +F ++ G++PN +YS+L+D N+D++ A
Sbjct: 479 GIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNA 538
Query: 161 LSVIDEMVNAGF 172
VI++M+ + F
Sbjct: 539 WEVINQMIASNF 550
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ D + L+ A + +K EA ++F ++S G +P+ + +SL V A +D
Sbjct: 233 IGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVM 292
Query: 160 ALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
AL ++ EM G P S+ET V CV+E + E +V+ F I M+
Sbjct: 293 ALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSV 345
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A +I G D+ AY F + GL P++ YN LI F L K A ++
Sbjct: 660 VPAYGALIDGFCKKNDMKTAYTLFSEL-LELGLMPNVSVYNNLISGFRNLGKMDAAIDLY 718
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +V+ G+ + +Y+ ++D L + + A + E++ G P
Sbjct: 719 KKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVP 763
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+NL + + + N +I G D D A + + + S G++P++ ++ +LI F
Sbjct: 577 LQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREM-SENGISPNVVTFTSLINGF 635
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + A + + S +K + +Y L+D D K A ++ E++ G P+
Sbjct: 636 CKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPN 694
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 76 VILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
VI+ C +++ A + E VG FG+ + + +LI F + +A F +
Sbjct: 316 VIVACVKEGNMEEAVKVKDEMVG--FGIPMSVIAATSLITGFCNGNELGKALDFFNRMEE 373
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
G+ P+ + +S++++ N + + A+ + M + G APS + K+ + C++ E+
Sbjct: 374 EGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEA 433
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L D+ +Y ALI F K A +F L+ LG+ PN Y+ L+ AA+
Sbjct: 656 LKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAI 715
Query: 162 SVIDEMVNAGFA 173
+ +MVN G +
Sbjct: 716 DLYKKMVNDGIS 727
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ G+ PD Y L+ K + AS++ E + PN + YS ++ H +
Sbjct: 758 ALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHHREGNLN 817
Query: 159 AALSVIDEMVNAGFA 173
A V DEM+ G
Sbjct: 818 EAFRVHDEMLEKGLV 832
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + +T +++ +L L +V+ N +I G N+ +D A ++ + + G
Sbjct: 671 CKKNDMKTAYTLFSELLELGL----MPNVSVYNNLISGFRNLGKMDAAIDLYKKMVND-G 725
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA-A 160
++ D+ +Y +I K AS ++ L++LG+ P+ + Y +LV+ L+ + Q A
Sbjct: 726 ISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNG-LSKKGQFVRA 784
Query: 161 LSVIDEMVNAGFAPS 175
+++EM P+
Sbjct: 785 SKMLEEMKKKDATPN 799
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 52 SVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
SV++Q++ R P +V N +IL + ++ ++ + + S +PD +Y+A
Sbjct: 180 SVFYQIKG--RKCNPTATV--YNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI AFGKL++ A R+F+ + G+ P Y+ ++ + +AAL +++EM G
Sbjct: 236 LISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKG 295
Query: 172 FAPS 175
AP+
Sbjct: 296 CAPT 299
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA-FGKLKKTFEASRVFEHLVSL 135
ILG A L+ A + F + S P++ +YN +I A F EA+ FE + +
Sbjct: 344 ILGRAG--RLEDALKLFGKM-DSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 136 GVKPNAMSYSLLVDAHL-TNRDQKAALSVIDEMVNAGFAP 174
G+ P++ +Y++L+D TNR +KA L +++EM GF P
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALL-LLEEMDEKGFPP 439
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTF 93
+ K + T+ ++YF+L + A + + C +I G + +D AY F
Sbjct: 264 TEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF 323
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ G PD+ N LI G+ + +A ++F + SL PN ++Y+ ++ A
Sbjct: 324 FNMLKD-GCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382
Query: 154 NRDQKAALSVIDEMVNA-GFAPSKET 178
++ + ++ E + A G APS T
Sbjct: 383 SKAPASEAALWFEKMKANGIAPSSFT 408
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
DRA++ + G P+I++YNA+I F K K EA +V S G+K + ++Y+
Sbjct: 265 FDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYT 323
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESN 195
+L+ H AL + D MV G P E + C + EES
Sbjct: 324 ILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQ 374
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E + R P +V +I G I +RA++ F + S P++H+Y +I +
Sbjct: 168 EMVGRGLKP--NVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYC 225
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ K A + +V G+KPN +Y+ L+ H A ++++M GF P+
Sbjct: 226 REGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIY 285
Query: 178 TLKKV 182
T V
Sbjct: 286 TYNAV 290
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 44 RKGFETLDSVYFQ--LENLSRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
R G ET VY + + ++RA P + A+ V + ++D A
Sbjct: 46 RVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVD----ALLAAMWR 101
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+G + D + ++ + + + + S F ++ G PN ++Y+ +D R K
Sbjct: 102 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQ 161
Query: 160 ALSVIDEMVNAGFAPS 175
A V++EMV G P+
Sbjct: 162 AFHVLEEMVGRGLKPN 177
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 53 VYFQLEN------LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+Y Q+EN L AE ++ A N ++ A+ A F + + GL PDI
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN-GLRPDI 258
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SY +L+ A+G+ + +A VF + KPN +SY+ L+DA+ + K A+ ++ E
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 167 MVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
M G P ++ + C R + + A+ I +NT
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNT 363
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ +Y ++++++ + +F+ +V+ GVKPN ++Y+ L+ A+ + + AL++
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245
Query: 164 IDEMVNAGFAP 174
+ + G P
Sbjct: 246 FNLIKKNGLRP 256
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y +I + + + +A +F + KP+A Y+ L+ AH + A++++++M+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 169 NAGFAPSKETLKKVRRRC 186
A P++ T V C
Sbjct: 74 RAAIPPTRTTYNNVINAC 91
>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 31 PFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P T +Y +++ + T V+ ++ N++ A+ S+ + +I G +
Sbjct: 190 PNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADV-RPSLVTYSTLIGGLCRGAQMKE 248
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A++ FE + + PD +YN LI F +L + +A +F + +PNA +Y+ L+
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLI 308
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
+ H + +AA V +EM+ +G P
Sbjct: 309 NGHCKKGEVEAARGVFEEMIRSGVQP 334
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ +YN L+ K ++ EA + E L S GV+ N SY ++++ + + + A
Sbjct: 366 GCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKA 425
Query: 161 LSVIDEMVNAGFAP 174
++ M+ GF P
Sbjct: 426 AGLLGMMLGRGFVP 439
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
P+ +Y LI K K EA+R VFE ++ GV+P+A+SY+ LV + + ++
Sbjct: 299 PNAFNYATLINGHCK-KGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGIN 357
Query: 163 VIDEMVNAG 171
++ EM G
Sbjct: 358 LVQEMWQKG 366
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A +C+I G L +A + + ++ G+ DI + ++I KL + +A +F+
Sbjct: 136 AYHCLIQGFCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 194
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS--KETLKK 181
V++G+ P+A+ Y++L+D + + AL V D MV+AG P+ E L+K
Sbjct: 195 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQK 246
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI+++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 59 GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 118
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G P K
Sbjct: 119 MEKFNQMIDQGVVPDK 134
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
++ NI+DL + GL PD YN L+ + + K +A RVF+ +VS G
Sbjct: 185 VMDAQNIFDLT----------VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 234
Query: 137 VKPNAMS-------------YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183
++PN + Y++++D A EM +G A +K T V
Sbjct: 235 IEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVL 294
Query: 184 R-----RCVRE 189
R RC E
Sbjct: 295 RGLFKNRCFDE 305
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +++ A F + G+ PDI SYN LI F K+KK +A +F
Sbjct: 300 VVTYNSLMDGYCLVKEVNTAKSIFNTMAQG-GVNPDIRSYNILINGFCKIKKVDKAMNLF 358
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + PN ++Y+ L+D + AL ++D+M + G P+
Sbjct: 359 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPN 404
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 57 LENLSRAEPPYKSVAAI--NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
L+ L R + + A+ N VI G ++ A+ + + S G++P++ +Y+ALI
Sbjct: 180 LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK-GISPNVVTYSALIS 238
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F + K +A +F ++ +KP+ ++++LVD +R K +V M+ G P
Sbjct: 239 GFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIP 298
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N +I G I +D+A F + + P++ +YN+LI K + A ++
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCK-NIIPNVVTYNSLIDGLSKSGRISYALQLV 393
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + GV PN ++Y+ ++DA A+++I + + G PS T
Sbjct: 394 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYT 442
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN+L+ + +K+ A +F + GV P+ SY++L++ + A
Sbjct: 295 GIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKA 354
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ +EM P+ T
Sbjct: 355 MNLFNEMHCKNIIPNVVT 372
>gi|357450481|ref|XP_003595517.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484565|gb|AES65768.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1705
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
VA N I GC D A F+++ G+ P+IH+Y +I K+K+ EA +F
Sbjct: 1539 VAIFNSFIDGCFPSNQPDMAKDIFDSMDQR-GVVPNIHNYTMMIKGLCKIKRVDEALNLF 1597
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
E + S + P+A Y+ ++D + AL ++ EM + G
Sbjct: 1598 EEMRSKNMTPDAKIYTSIIDGLFKSGRDTCALKLVGEMHDKGL 1640
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 52 SVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
SV++Q++ R P +V N +IL + ++ ++ + + S +PD +Y+A
Sbjct: 180 SVFYQIKG--RKCNPTATV--YNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI AFGKL++ A R+F+ + G+ P Y+ ++ + +AAL +++EM G
Sbjct: 236 LISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKG 295
Query: 172 FAPS 175
AP+
Sbjct: 296 CAPT 299
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA-FGKLKKTFEASRVFEHLVSL 135
ILG A L+ A + F + S P++ +YN +I A F EA+ FE + +
Sbjct: 344 ILGRAG--RLEDALKLFGKM-DSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 136 GVKPNAMSYSLLVDAHL-TNRDQKAALSVIDEMVNAGFAP 174
G+ P++ +Y++L+D TNR +KA L +++EM GF P
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALL-LLEEMDEKGFPP 439
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTF 93
+ K + T+ ++YF+L + A + + C +I G + +D AY F
Sbjct: 264 TEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF 323
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ G PD+ N LI G+ + +A ++F + SL PN ++Y+ ++ A
Sbjct: 324 FNMLKD-GCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382
Query: 154 NRDQKAALSVIDEMVNA-GFAPSKET 178
++ + ++ E + A G APS T
Sbjct: 383 SKAPASEAALWFEKMKANGIAPSSFT 408
>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 426
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ ++G D+ L+ + + P V N + L + D +A F +
Sbjct: 15 LITHFGKEGL--FDAALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLCDYSKAISIFSRLK 71
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD+ +YNA+I FGK K EA + + + GV PN SYS L+ ++ N+
Sbjct: 72 KS-GFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 158 KAALSVIDEM 167
ALSV EM
Sbjct: 131 LEALSVFAEM 140
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 178 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 237
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM N G P+ T
Sbjct: 238 ANNLIQEMQNRGIEPNSIT 256
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + GL PD++ YNAL+ ++ + + A+ +F + +G +P+ SY++
Sbjct: 338 EKAEEIFEQLQED-GLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 396
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+VDA+ A +V +EM G AP+ ++
Sbjct: 397 MVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKS 428
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+E+ SRA PY G A I+ L + G PD SYN ++ A+
Sbjct: 363 MESYSRAGYPY-----------GAAEIFSLMQ----------HMGCEPDRASYNIMVDAY 401
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ +A VFE + LG+ P S+ LL+ A+ RD +++ EM G P
Sbjct: 402 GRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEP 459
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
T DI +YN LI +GK +F L +P+ ++++ + A+ + L
Sbjct: 493 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 552
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVRE 189
V +EM+++G AP T K + C E
Sbjct: 553 VFEEMIDSGCAPDGGTAKVLLSACSSE 579
>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 867
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
++++A N ++ G AN DRA + EA+ + P++ ++N LI + + +A
Sbjct: 384 HRNLATWNSLVAGHANAGHFDRALELVEAM-KRHRIDPNVTTWNGLITGYAMNGLSSQAM 442
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ + S GV PN +S++ L+ D + + + EM G PS T+ + R C
Sbjct: 443 LLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRAC 502
>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 866
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
++++A N ++ G AN DRA + EA+ + P++ ++N LI + + +A
Sbjct: 383 HRNLATWNSLVAGHANAGHFDRALELVEAM-KRHRIDPNVTTWNGLITGYAMNGLSSQAM 441
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ + S GV PN +S++ L+ D + + + EM G PS T+ + R C
Sbjct: 442 LLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRAC 501
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFE 130
N VI G I L +A + + ++GL P + +YN+LI + G + + +
Sbjct: 195 NTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V G+ P A+++ +L++ + N + AA+ V +EM G A S T
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVT 301
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 67 YKSVAAINCVILGCANIWDLDRAY-QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
Y S+ C G N++ +D + EA G++P ++ LI + K T A
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEA-----GISPTAVTFGVLINGYCKNSNTAAA 283
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
RVFE + G+ + ++Y+ L+ + + + +++EM + G +P++ T V +
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKG 343
Query: 186 -CVREMDEESNDRVEALAKK 204
C + M ++ND ++ + ++
Sbjct: 344 FCKKGMMADANDWIDGMTER 363
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++ +YN LI F + AS + + + G++ + ++Y++L+ A + + A
Sbjct: 399 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKA 458
Query: 161 LSVIDEMVNAGFAPSKET 178
+ ++DEM G P+ T
Sbjct: 459 VKLLDEMSEVGLEPNHLT 476
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD+ YN LI + +L K +A V E + G+ PN +Y+ L+ + D ++A +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 164 IDEMVNAGF 172
+DEM G
Sbjct: 427 LDEMKEKGI 435
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V NC+I G + D A + + G+ D+ +YN LI A + +A ++
Sbjct: 403 NVTTYNCLITGFSRSGDWRSASGLLDEMKEK-GIEADVVTYNVLIGALCCKGEVRKAVKL 461
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ + +G++PN ++Y+ ++ + K+A + M
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500
>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N +I +I + RAY+ FE +G G+ PD+ ++ LI AF + + A ++
Sbjct: 325 VVSYNTIIKAFCSISNNRRAYKLFEEMGRK-GIAPDVVTFTILIKAFLREGNSDMAKKLL 383
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + +G+ P+ + Y+ ++D H + + A S+ +MV G P
Sbjct: 384 DLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGITP 428
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ SYNALI F K + E ++E ++ G P+ ++Y L++ A + A
Sbjct: 425 GITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDA 484
Query: 161 LSVIDEMVNAGFA 173
V D+M+ G
Sbjct: 485 CRVWDQMMERGLT 497
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D+ SYN +I AF + A ++FE + G+ P+ +++++L+ A L + A ++
Sbjct: 324 DVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLL 383
Query: 165 DEMVNAGFAPSK 176
D M G P +
Sbjct: 384 DLMAGMGLLPDR 395
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S N +I G +D+A + S G PD+ +YN L+ EA ++
Sbjct: 219 STLVYNALISGFCRAGRIDKALAMVSFM-SRTGCKPDLVTYNVLLNYCCNEFMFEEAVKL 277
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHL-TNRDQKAALSVIDEMVNAGFA 173
+ + ++P+ SY+ L+ AH N KA L ++ +MV GF
Sbjct: 278 LKKMECSAIEPDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKGFC 323
>gi|219363531|ref|NP_001137052.1| uncharacterized protein LOC100217224 [Zea mays]
gi|194698168|gb|ACF83168.1| unknown [Zea mays]
Length = 338
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+ D+ +YNALI KT++AS++ + L + ++PNA ++S L+ ++ + A
Sbjct: 181 GLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALIIGQCKKQNPERA 240
Query: 161 LSVIDEMVNAGFAPS 175
L +++ M AGF P+
Sbjct: 241 LDLLNAMKKAGFQPN 255
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +YN +++ K + +A R+ + GV PN ++++ L+ +++T D + A
Sbjct: 111 GLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDNEVA 170
Query: 161 LSVIDEMVNAGFA 173
+ + +EM+ AG +
Sbjct: 171 MKMHEEMMKAGLS 183
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG N +A Q + + ++ L P+ +++ALI K + A + +
Sbjct: 190 NALILGLCNEGKTWKASQLVQELCAA-KLEPNASTFSALIIGQCKKQNPERALDLLNAMK 248
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
G +PN +YS+L+ N+D + A+ V+ +M+ AP K L
Sbjct: 249 KAGFQPNYYTYSILISTFSKNKDFEGAIDVLKDMLMRCIAPDKALL 294
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A + V + C + + ++F + GL PD +YN +I + + +T +A ++
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ +KPN ++Y+ LV + A +++EMV+AGF+PS T ++V + C
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG LD A+ T+ + ++P+I ++N L+ + + EA V +
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQ-NISPNIATFNTLLGGLESVGRIGEAGTVLIEME 791
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++PN ++Y +L H ++ A+ + EMV GF P T
Sbjct: 792 KSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVST 836
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ D+ +Y AL+ GK KT E +S + PN ++Y++L+DA +
Sbjct: 337 SRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVD 396
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A V+ EM +P+ T V
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSV 420
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HL 152
E VG F P + +YNALI F K +A +F+ + GV P + +Y +LV +
Sbjct: 824 EMVGKGF--VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWYD 881
Query: 153 TNRDQKA 159
R+QK+
Sbjct: 882 LAREQKS 888
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 102 LTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
++P++ +++++I F G L K E R+ + G+ PN ++Y L+D + Q
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER---GINPNVVTYGTLIDGFFKFQGQD 466
Query: 159 AALSVIDEMVNAGFAPSK 176
AAL V +M+ G +K
Sbjct: 467 AALEVYHDMLCEGVKVNK 484
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG F P + +YNALI F K+ +A +F + + GV P + +Y +LV
Sbjct: 829 EMVGKGF--LPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSK 886
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
R+ + +M GF+PSK TL + R
Sbjct: 887 LRNGTEVRKFLKDMKEKGFSPSKGTLSSISR 917
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A + V + C + + ++F S GL PD +YN +I A + KT +A ++
Sbjct: 559 AVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLN 618
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ +KPN ++YS L+ + A +++EM ++GF+P+ T ++V + C
Sbjct: 619 GMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQAC 674
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG LD A+ T++ + G++P++ ++N L+ + E+ V +
Sbjct: 738 NALILGHFKSGHLDNAFSTYDQM-LYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMK 796
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++P+ ++Y +LV + ++ A+ + EMV GF P T
Sbjct: 797 KRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVST 841
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + D++ A+ E + + G+ D+ YN+L+ + + A +
Sbjct: 174 VVGWNSLVDGYCKVGDMETAFAVAERMKAQ-GVGVDVVGYNSLVAGLCRAGEVDAARDMV 232
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ + GV+PN ++Y++ + + A S+ +EMV G P TL
Sbjct: 233 DTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTL 282
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A+ +E + G+ PD+ + +AL+ K + EA +F + +G PN ++Y
Sbjct: 260 VDDAFSLYEEMVRK-GVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYC 318
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
+L+D + +LS++ E+V+ G
Sbjct: 319 MLIDTLAKAQRGNESLSLLGEVVSRG 344
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 88 RAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
R ++ +G S G+ D+ Y AL+ K K EA +F H +S PN ++Y+
Sbjct: 329 RGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYT 388
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-----VRRRCV-------REMDEE 193
+L+DA + A V+ EM +P+ T V+R V REM E
Sbjct: 389 VLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKER 448
Query: 194 SND 196
D
Sbjct: 449 GID 451
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD YN I L K+ EA E + S G+KP+ ++Y+ ++ A AL
Sbjct: 555 LLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKAL 614
Query: 162 SVIDEMVNAGFAPS 175
+++ M + P+
Sbjct: 615 KLLNGMKRSSIKPN 628
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P +Y+ L+ +GK EA R++ +V G P +Y+ L+ A
Sbjct: 799 GIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQA 858
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM N G P+ T
Sbjct: 859 KELFNEMQNRGVLPTSCT 876
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A++ + + S G TP++ +YN LI K KT +A + E LVS G P+ ++Y+
Sbjct: 131 IDEAFELVKEM-SGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYT 189
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++VD AL +++ M+ G PS
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N V+ G +D A+ E++ S+ G PD+ SYN +I K K EA +V
Sbjct: 321 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQV 379
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ G+ P+A++Y+ L+ A+ ++ M+ AG P T
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 429
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD FE + G P+I +YN ++ K K EA E + S G P+ +SY+
Sbjct: 303 LDEIPNVFEDMACR-GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYN 361
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D K A V+D+M+ AG P T
Sbjct: 362 IIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 394
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI+G LDRA + + + GL H++N LI AF K K+ EA + E +V
Sbjct: 536 VIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQR 595
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G P+ ++Y++++ A + DEM G S
Sbjct: 596 GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 635
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S N +I G ++DRA + SS G PD+ +Y+ L K + EA +
Sbjct: 79 SCCTYNTLISGLCKQQNVDRAKTLVDEFVSS-GFVPDVVTYSILADGLCKRGRIDEAFEL 137
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + G PN ++Y+ L+D + A +++ +V++GF P
Sbjct: 138 VKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVP 183
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+A + E + G TP + +Y AL+ + + EA +F+ +VS +A++Y
Sbjct: 201 LDKALKMVEGM-LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYV 259
Query: 146 LLVDAHLTNRDQKAALSVID 165
LV+ + + K A V+D
Sbjct: 260 SLVNGYCKSSRTKEAQKVVD 279
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A E + G +P + +YN +I KL K +A +F+ + G+ +++SY+
Sbjct: 582 LDEALTLLELM-VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 640
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNA 170
+L+ K AL V++EM ++
Sbjct: 641 VLIYGLCGQGRGKEALQVLEEMASS 665
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TP I YNAL+ + K + E VFE + G PN +Y++++D + A
Sbjct: 284 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343
Query: 163 VIDEMVNAGFAP 174
++ M +AG P
Sbjct: 344 FLESMHSAGCVP 355
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD ++N+++ K K A + + +P+ +Y+ L+ ++ A
Sbjct: 40 GVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRA 99
Query: 161 LSVIDEMVNAGFAP 174
+++DE V++GF P
Sbjct: 100 KTLVDEFVSSGFVP 113
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E + R P N ++ G +RA+ AV + P +YN LI
Sbjct: 35 EMVDRGVTP--DTVTFNSIMDGLCKAGKFERAHSLL-AVMAERNCRPSCCTYNTLISGLC 91
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + A + + VS G P+ ++YS+L D A ++ EM G P+
Sbjct: 92 KQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPN 149
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN L+ F K ++ +A + ++++ GV P+ ++Y+ L+ A
Sbjct: 387 GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 446
Query: 161 LSVIDEMVNAGFAPSKETL------KKVRRRCVRE----MDEESNDRVEALAKKFDI--- 207
++ EM+ G S T + + C+++ MD + VEA ++I
Sbjct: 447 YELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 506
Query: 208 RMNTENR 214
R+ E R
Sbjct: 507 RLCKEGR 513
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +YN LI K KT +AS + +V GV P+ ++++ ++D + A
Sbjct: 6 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65
Query: 162 SVIDEMVNAGFAPS 175
S++ M PS
Sbjct: 66 SLLAVMAERNCRPS 79
>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 629
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTF-EAVGSSF 100
C + + V+ Q+ N E ++ +C++ G +L A++ E VG +
Sbjct: 465 CEKGAVKNAKMVFDQMIN----EGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGY 520
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
L +NALI+ F K A ++ + +V G P+ +YS L+DA + + A
Sbjct: 521 FLVAS--GFNALIHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKA 578
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
LS+ ++M+ G P T + R +E+ N V + K+ +
Sbjct: 579 LSIFNQMIEKGITPDSSTWNSLLIRLSKEIIWLENKNVFHVNKQLE 624
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
V S G+ P+ YN L++A K K A + + + +PN +++++L+ A+
Sbjct: 203 VMKSRGVKPNAVVYNTLLHALCKNGKVGRARSLMDEIE----EPNDVTFNVLIAAYCKEE 258
Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKV 182
+ AL ++++ + GF P T+ KV
Sbjct: 259 NLVQALVLLEKSFSLGFVPDVVTMTKV 285
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ ++ ++ A K K EA + + ++ GV+P+ ++Y+ L+D H + A+
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330
Query: 162 SVIDEMVNAGFAP 174
V D MV GFAP
Sbjct: 331 KVFDMMVRKGFAP 343
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS---SFGLT 103
F TLD L PP S+ ++ A + + Y T ++ + SFG+
Sbjct: 43 FNTLDDALSSFNRLLHMHPP-PSIVDFAKLLTSIAKM----KHYSTVLSLSTQMDSFGVP 97
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++ N LI +F L + A V ++ LG +P+ +++ L+ AL +
Sbjct: 98 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 157
Query: 164 IDEMVNAGFAPS 175
D+M++ GF P+
Sbjct: 158 FDKMIDEGFQPN 169
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G I +D+A FE + + PD +YN L+Y + + +A +F
Sbjct: 345 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDTKTYNTLMYGLCHVGRLQDAIALF 403
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+V+ G P+ ++YS+L+D+ NR + A++++ + + P
Sbjct: 404 HEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNP 448
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G +L+ A F + SS GL P + +YN +I+ K EA+++F
Sbjct: 450 IQVYNIIIDGMCRAGELEAARDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF 508
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
+ P+ +Y+ + L N + A+ +++EM+ GF+
Sbjct: 509 MEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFS 552
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y L+ + EA +VF+ +V G P+ +SY+ L++ + A
Sbjct: 305 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 364
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + +EM + P +T
Sbjct: 365 MYLFEEMCRKEWIPDTKT 382
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y LI K+ T A R+ + +P+ + Y+ ++D+ +R A
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224
Query: 161 LSVIDEMVNAGFAP 174
++ +MV G +P
Sbjct: 225 FNLFSQMVGQGISP 238
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
+ N +I G N +DRA + E + S G PDI +YN L+ A K K +A +
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIM-VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ 406
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
L S G P+ +SY+ ++D L + A+ +++EM G P T V RE
Sbjct: 407 LSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGK 466
Query: 192 EESNDRVEALAKKFDIRMNTENRKNILFNL 221
+ K F I+ N +I+ L
Sbjct: 467 VHEAIKFFHYLKGFGIKPNAFIYNSIMMGL 496
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
D+V + S+ P S+ + N VI G + + A + E + GL PD+ +
Sbjct: 399 DAVVILSQLSSKGCSP--SLISYNTVIDGLLKVGKAELAVELLEEMCYK-GLKPDLITCT 455
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+++ + K EA + F +L G+KPNA Y+ ++ + A+ + +MV
Sbjct: 456 SVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVAN 515
Query: 171 GFAPSKET 178
G P++ +
Sbjct: 516 GCKPTEAS 523
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L +A E + G TP+ S+N LI F K A E +VS G P+ ++Y+
Sbjct: 327 LGKALNVLEMM-PKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYN 385
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+L+ A + A+ ++ ++ + G +PS
Sbjct: 386 ILLTALCKDGKVDDAVVILSQLSSKGCSPS 415
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ + ALI F K+ +T A+R+ L G +A SY++L++A+ + + + A
Sbjct: 99 GKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEA 158
Query: 161 LSVIDEMVNAGFAPSKET 178
L V+D + AP+ T
Sbjct: 159 LRVLD---HTSVAPNAAT 173
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D +SYN LI A+ K + EA RV +H V PNA +Y ++ + K A
Sbjct: 134 GAVIDANSYNVLINAYCKSGEIEEALRVLDHT---SVAPNAATYDAVLCSLCDRGKLKQA 190
Query: 161 LSVIDEMVNAGFAP 174
+ V+D + + P
Sbjct: 191 MQVLDRQLQSKCYP 204
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A + V + C + + ++F + GL PD +YN +I + + +T +A ++
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+ +KPN ++Y+ LV + A +++EMV+AGF+PS T ++V + C
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG LD A+ T+ + ++P+I ++N L+ + + EA V +
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQ-NISPNIATFNTLLGGLESVGRIGEAGTVLIEME 791
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++PN ++Y +L H ++ A+ + EMV GF P T
Sbjct: 792 KSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVST 836
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG F P + +YNALI F K +A +F+ + GV P + +Y +LV
Sbjct: 824 EMVGKGF--VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
R+ + +M GF+PSK TL + R
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICR 912
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ D+ +Y AL+ GK KT E +S + PN ++Y++L+DA +
Sbjct: 337 SRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVD 396
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A V+ EM +P+ T V
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSV 420
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 102 LTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
++P++ +++++I F G L K E R+ + G+ PN ++Y L+D + Q
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER---GINPNVVTYGTLIDGFFKFQGQD 466
Query: 159 AALSVIDEMVNAGFAPSK 176
AAL V +M+ G +K
Sbjct: 467 AALEVYHDMLCEGVKVNK 484
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D D A++ + + SS G PD++ Y A I+AF EA + + GV P+A++Y
Sbjct: 369 DFDYAHRILDQMVSS-GYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTY 427
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+L++DA+ A V+ M + G PS T + + ++E
Sbjct: 428 TLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKE 472
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SR P SV N +I G I LD AY+ + + G+ PD +Y+ I K
Sbjct: 208 SRLTP---SVVTYNSLIHGQCKIGYLDSAYRLLNLMNEN-GVVPDQWTYSVFIDTLCKKG 263
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ EA+ +F L G+K N + Y+ L+D + A S++D M+ P+ T
Sbjct: 264 RIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSST 321
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+ +YNALI K +K EA + E ++ G+K +Y++L+ A L D A +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376
Query: 164 IDEMVNAGFAP 174
+D+MV++G+ P
Sbjct: 377 LDQMVSSGYQP 387
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+IH+Y +I A K K E R+ + +V G+ P+ +Y+ L+D + +AA
Sbjct: 104 GCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAA 163
Query: 161 LSVIDEMVNAGFAPSKET 178
++D M + P++ T
Sbjct: 164 QEILDLMHSNSCNPNERT 181
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + +Y +++A + + EA +F + G +PN +Y+++++A + +
Sbjct: 72 PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRI 131
Query: 164 IDEMVNAGFAPSKET 178
+DEMV G PS T
Sbjct: 132 LDEMVEKGLVPSVPT 146
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 81 ANIWDL---DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
A++W + + A + FE + G +P+I++Y LI K+ + A ++F+H+ GV
Sbjct: 496 ADVWKMMKFETALELFEKM-LEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
P+ Y+ L++ A+ ++ M+ G P E+L
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESL 596
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +YNALI + K A + + + S PN +Y+ L+ ++ A
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198
Query: 161 LSVIDEMVNAGFAPSKET 178
++++ +M+ + PS T
Sbjct: 199 MALLSKMLESRLTPSVVT 216
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F L N E + +V+ NC+I G ++ A + + ++ L D+ +YN LI
Sbjct: 398 FALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEM-ENYELKADVVTYNILIG 456
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
+ K + +A ++ ++++GVKPN ++Y+ L+D + + KAAL V +M G
Sbjct: 457 GWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEG 513
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G +N LD A ++ + GL P+I ++NALI F K K EA ++
Sbjct: 307 NIVTYNSLINGLSNNGKLDEAIALWDKM-VGLGLKPNIVTFNALINGFCKKKMIKEARKL 365
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F+ + + PNA++++ ++DA + ++ + M++ G P+ T
Sbjct: 366 FDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVST 415
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
S PL+ A KG ET + Y E + R P ++ N I G L++A
Sbjct: 165 LNSCNPLLSALV-KGNETGEMQYVYKEMIKRRIQP--NLTTFNIFINGLCKAGKLNKAED 221
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
E + ++G +P+I +YN LI G K + A + + +++ + PN ++++ L+
Sbjct: 222 VIEDI-KAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLI 280
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D + + AA + +EM G P+
Sbjct: 281 DGFCKDENVLAAKNAFEEMQRQGLKPN 307
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P+ ++N LI F K + A FE + G+KPN ++Y+ L++ N A+
Sbjct: 269 ICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAI 328
Query: 162 SVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++ D+MV G P+ T + C ++M +E+ + +A++
Sbjct: 329 ALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQ 372
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN LI + + A ++ + + +K + ++Y++L+ + + A
Sbjct: 408 GIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKA 467
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM+N G P+ T
Sbjct: 468 EKLLGEMLNVGVKPNHVT 485
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
T+ SV+ L L + P + + ++L ++ A + F V +G ++
Sbjct: 110 HTVSSVFHSL--LLGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRV-QDYGFKLSLN 166
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
S N L+ A K +T E V++ ++ ++PN ++++ ++ A VI+++
Sbjct: 167 SCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDI 226
Query: 168 VNAGFAPS 175
GF+P+
Sbjct: 227 KAWGFSPN 234
>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g26500-like [Glycine max]
Length = 494
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
V+ G + AY+ FE + PD+ Y+ I KL++ EA++VF ++
Sbjct: 316 VVYGLLTRRRVREAYRVFEGIE-----VPDLCVYHGFIKGLLKLRRAGEATQVFREMIRR 370
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVID-------EMVNAGFAPSKETLKKVRRRCVR 188
G +P +Y +L+ HL R +K +++ MV AG SKE K V R R
Sbjct: 371 GCEPTMHTYIMLLQGHLGRRGRKGTDPLVNFDTIFVGGMVKAG--KSKEATKYVERVLNR 428
Query: 189 EMD 191
M+
Sbjct: 429 GME 431
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + GL PD++ YNAL+ ++ + + A+ +F + +G +P+ SY++
Sbjct: 316 EKAEEIFEQLQED-GLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 374
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+VDA+ A +V +EM G AP+ ++
Sbjct: 375 MVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKS 406
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+E+ SRA PY G A I+ L + G PD SYN ++ A+
Sbjct: 341 MESYSRAGYPY-----------GAAEIFSLMQ----------HMGCEPDRASYNIMVDAY 379
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ +A VFE + LG+ P S+ LL+ A+ RD +++ EM G P
Sbjct: 380 GRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEP 437
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
T DI +YN LI +GK +F L +P+ ++++ + A+ + L
Sbjct: 471 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 530
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVRE 189
V +EM+++G AP T K + C E
Sbjct: 531 VFEEMIDSGCAPDGGTAKVLLSACSSE 557
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S+ EP ++ +I G N L+ A + F + G+ PD+ +Y +I K
Sbjct: 356 SKIEP---NIFIYTILIQGMCNFGKLEAARELFSNLFVK-GIQPDVVTYTVMISGLLKGG 411
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ EA +F + G PN+ +Y++++ L N D A +I+EMV GF+ T +
Sbjct: 412 LSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQ 471
Query: 181 KVRRRCVREMDEESNDRVEAL 201
+ D ES D + +L
Sbjct: 472 MLS-------DLESRDEIISL 485
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110
+++ F E ++R P +V + ++ G N+ + A F+ + + PD ++N
Sbjct: 135 EAMEFLSEMVNRGISP--NVVTYSSILHGFCNLGRSNEATSLFKQMVER-NVMPDTVTFN 191
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
L+ K EA VFE ++ GV+PN +Y+ L+D + + A + + MV
Sbjct: 192 ILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRK 251
Query: 171 GFAPS 175
G APS
Sbjct: 252 GCAPS 256
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD+ +Y+ +I K+ T A ++ + + G KPN + YS ++D+ ++
Sbjct: 76 MGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITE 135
Query: 160 ALSVIDEMVNAGFAPSKETLKKV 182
A+ + EMVN G +P+ T +
Sbjct: 136 AMEFLSEMVNRGISPNVVTYSSI 158
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++++YNAL+ + + EA ++F +V G P+ SY++L+ H + A
Sbjct: 217 GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEA 276
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM + P T
Sbjct: 277 KGLLAEMSHKALTPDTVT 294
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
LV S++G F+ EP +V N ++ G + +D A + F +
Sbjct: 193 LVDGLSKEGMILEAQCVFETMIEKGVEP---NVNTYNALMDGYCSQSQMDEAQKLFNIMV 249
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G P + SYN LI K + EA + + + P+ ++YS L+ +
Sbjct: 250 RK-GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRP 308
Query: 158 KAALSVIDEMVNAGFAP 174
+ A +++EM + G P
Sbjct: 309 QDAQKLLEEMRSYGLLP 325
>gi|356527892|ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g01390-like [Glycine max]
Length = 545
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D+A Q + + S + SY A I ++ EA+RV++ ++S GV PN +Y
Sbjct: 144 NVDQAMQMWHQIKSK-----TVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTY 198
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++L+D + + K AL + ++M AG P K + +RC +
Sbjct: 199 TVLMDYLIASGKCKEALEIFEKMQEAGAQPDKAACNILIQRCSK 242
>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 804
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G A ++ A + F+ S G+TP++ ++N+LIY + K + EA ++ + +
Sbjct: 491 NIVIDGYAKSGCIEEALELFKVAIES-GITPNVATFNSLIYGYCKTQNIAEARKILDVIK 549
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
G+ P+ +SY+ L+DA+ K+ + EM G P+ T + + R E
Sbjct: 550 LYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLE 609
Query: 194 SNDRV--EALAKKFD 206
+ ++V E + +KF+
Sbjct: 610 NCNQVLRERILEKFN 624
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A G+ I DM ++ SP Y +++ C + +D L+++
Sbjct: 317 LVKGFHLLGMISGA-GEVIQDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLILLKDMLS 374
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
KS+ + ++ G +D A F + ++GLTPD+ +Y+ +I+ KL K
Sbjct: 375 RGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDL-EAYGLTPDLVAYSIVIHGLCKLGKF 433
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A RV++ + + PN+ + ++ A S++D ++++G
Sbjct: 434 DMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSG 482
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ + +D A F V GL P ++S+N LI + EA +
Sbjct: 240 SVVSFNSIMSSYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 298
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++LV HL A VI +M++ G +P
Sbjct: 299 ASDMNKHGVEPDSVTYNILVKGFHLLGMISGAG-EVIQDMLDKGLSP 344
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN L+ F L A V + ++ G+ P+ ++Y++L+ +
Sbjct: 306 GVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMG 365
Query: 161 LSVIDEMVNAGF 172
L ++ +M++ GF
Sbjct: 366 LILLKDMLSRGF 377
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + L RA++ F+ + S L P +YN LI + +A R L
Sbjct: 643 NTIIQYLCRVKHLSRAFELFKKMKSQ-NLDPTSATYNILIDSLCIYGCIRKADRFLYSLQ 701
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDE 192
V + +Y+ ++ AH D + A+ + +++++ GF S ++ + R C R +
Sbjct: 702 KRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRLCRRHLAI 761
Query: 193 ES 194
ES
Sbjct: 762 ES 763
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A + + S G+ P++ SYN ++ A + K A VF +++ G+KPN +YS
Sbjct: 458 IDKATELLRKM-ESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYS 516
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNA 170
+L+D N D++ L V+++M ++
Sbjct: 517 ILIDGCFKNHDEQNVLEVVNQMTSS 541
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
SYN++I F K + A +E + + G+ PN ++Y+ L+D N AL + DEM
Sbjct: 585 SYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEM 644
Query: 168 VNAG 171
N G
Sbjct: 645 KNKG 648
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
Y +AVG L PD Y ++ K + + ++FE + V PN + Y+ ++
Sbjct: 746 YTEMQAVG----LVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIA 801
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H + A + DEM++ G P T
Sbjct: 802 GHYREGNLDEAFRLHDEMLDKGILPDGAT 830
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 76/187 (40%), Gaps = 39/187 (20%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C + +++++EN E P + + +I + ++++A + ++ + S G
Sbjct: 349 CKNNDLGSALDLFYKMEN----EGPSPNSVTFSVLIERFSKNGEMEKALEFYKKM-ESLG 403
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEH------------------------------ 131
LTP + + +I + K +K EA ++F+
Sbjct: 404 LTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFICNTILSWLCKQGKIDKATE 463
Query: 132 ----LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
+ S G+ PN +SY+ ++ AH ++ A +V M+ G P+ T + C
Sbjct: 464 LLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCF 523
Query: 188 REMDEES 194
+ DE++
Sbjct: 524 KNHDEQN 530
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P Y V+ S K D++ ++ E +S VAA + + C N DL A
Sbjct: 301 PSQETYTSVILASVKQGNMEDAIRWKDEMVSDG-ISMNVVAATSLITGHCKNN-DLGSAL 358
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
F + + G +P+ +++ LI F K + +A ++ + SLG+ P+ ++
Sbjct: 359 DLFYKMENE-GPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQG 417
Query: 151 HLTNRDQKAALSVIDEMVNAGFA 173
L + + AL + DE G A
Sbjct: 418 WLKGQKHEEALKLFDESFETGLA 440
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
P +Y ++I A K +A R + +VS G+ N ++ + L+ H N D +AL
Sbjct: 300 VPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALD 359
Query: 163 VIDEMVNAGFAPSKETLKKVRRR 185
+ +M N G +P+ T + R
Sbjct: 360 LFYKMENEGPSPNSVTFSVLIER 382
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S + N +I G ++D A +E + ++ G++P++ +Y +L+ K + +A +
Sbjct: 582 SCMSYNSIIDGFIKEGEMDYAVAAYEEMCAN-GISPNVITYTSLMDGLCKNNRMDQALEM 640
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ + + GVK + +Y L+ + ++A ++ E++ G PS+
Sbjct: 641 RDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQ 688
>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
Length = 680
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPDI +YN +I FGK K EA + + + ++ V P+ +SY
Sbjct: 244 DYSKAISIFSRLKRS-GITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSY 302
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L++ + N ALSVI EM
Sbjct: 303 STLLNMFVENEKFLEALSVISEM 325
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN ++ +G+ + EA +F + +K N ++Y+ ++ + + +
Sbjct: 363 IGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEK 422
Query: 160 ALSVIDEMVNAGFAPSKET 178
A +++ +M G P+ T
Sbjct: 423 ATNLVQDMQKRGIEPNAIT 441
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G DRA++ + G P+I++YNA+I F K K EA +V S
Sbjct: 363 LIGGHCKGGSFDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQ 421
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES 194
G+K + ++Y++L+ H AL + D MV G P E + C + EES
Sbjct: 422 GLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEES 481
Query: 195 N 195
Sbjct: 482 Q 482
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I +RA++ F + S P++H+Y +I + + K A + +V
Sbjct: 292 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 351
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G+KPN +Y+ L+ H A ++++M GF P+ T V
Sbjct: 352 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAV 398
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 44 RKGFETLDSVYFQ--LENLSRAE--PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
R G ET VY + + ++RA P +S A+ V + ++D A
Sbjct: 154 RVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVD----ALLAAMWR 209
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+G + D + ++ + + + + S F ++ G PN ++Y+ +D R K
Sbjct: 210 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQ 269
Query: 160 ALSVIDEMVNAGFAPS 175
A V++EMV G P+
Sbjct: 270 AFHVLEEMVGRGLKPN 285
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV-SLGVKPNAMSYSLLVDAHL 152
E VG GL P+++++ LI K+ T A R+F L+ S KPN +Y++++ +
Sbjct: 276 EMVGR--GLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYC 333
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ MV G P+ T
Sbjct: 334 REGKLARAEMLLVRMVEQGLKPNTNT 359
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I C+ +L+ A FE + +S PD+ +YNA++ G+ K EA R+F
Sbjct: 293 VITYNTLISACSQSSNLEDAVTVFEEMIAS-ECRPDLWTYNAMVSVHGRCGKAEEAERLF 351
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV G P+A++Y+ L+ A + +E+V AGF ++ T
Sbjct: 352 GELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEIT 400
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 13 EFETAYGDSIIDMEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVA 71
E E +G+ + E+ F P Y L+ A +++G +D V E L +A K+
Sbjct: 346 EAERLFGELV---EKGFMPDAVTYNSLLYAFAKEG--NVDKVEHTCEELVKAGFK-KNEI 399
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
N +I + LD A ++ + + G TPD +Y +I + GK+ K EA +V E
Sbjct: 400 TYNTMIHMYGKMGRLDLAVGLYDEM-RAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLED 458
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ G+KP +++S L+ A+ + A D M+ +G P +
Sbjct: 459 MADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDR 503
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 288 GLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEA 347
Query: 161 LSVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ E+V GF P T + + V +++ + V+A KK +I NT
Sbjct: 348 ERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNT 403
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTFEAVG 97
+ T+ +Y ++ L A Y + A+ C +I + + A + E +
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMA 460
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ GL P + +++ALI A+ K + +A + F+ +++ GVKP+ ++Y +++D + +
Sbjct: 461 DA-GLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGET 519
Query: 158 KAALSVIDEMVNAGFAP 174
+ L + M+N + P
Sbjct: 520 EKMLRLYRTMMNDNYRP 536
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K + E LV G K N ++Y+ ++ + A
Sbjct: 358 GFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLA 417
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + DEM G P T
Sbjct: 418 VGLYDEMRAVGCTPDAVT 435
>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 52 SVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111
V L +R +P + N V+ G A +D+ Q F A+ GL PD S+
Sbjct: 228 GVASSLVQAARGQPFHLDKQVYNDVLGGWARFGRVDK-LQHFWAMMLEDGLVPDDVSHCH 286
Query: 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
LI A G+ + EA RVFE +V G P M+Y+ LV ++ D ++ +MV+
Sbjct: 287 LIEALGRAGQAEEALRVFEKMVQEGYGPTTMAYNALVFNFISVGDLDRSIKYYKDMVDNN 346
Query: 172 FAPSKETLKKVRR 184
P+ +T K+ R
Sbjct: 347 CPPNSDTYCKMIR 359
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 80 CANIWDLDRAYQTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C I L RA Q EA+ G P +YNAL++ F + + + ++ +V
Sbjct: 285 CHLIEALGRAGQAEEALRVFEKMVQEGYGPTTMAYNALVFNFISVGDLDRSIKYYKDMVD 344
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
PN+ +Y ++ A L R AL + D+M+ G P
Sbjct: 345 NNCPPNSDTYCKMIRALLKTRRVADALQMFDDMLAQGVLP 384
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ + PP V + N VI G +D+AY F + G+ PD+
Sbjct: 284 EALELLHVMADDQGLSCPP--DVVSYNTVINGFFREGQVDKAYNLFLQMIDR-GIPPDVV 340
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN +I K + A VF+ ++ GVKP+ +Y+ L+ +L+ K + +++EM
Sbjct: 341 TYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEM 400
Query: 168 VNAGFAP 174
P
Sbjct: 401 STHDLEP 407
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKA 159
G+ D+ +N L+ + + EA R+ E ++ +GV+P+ +SY+ LVD H LT R +A
Sbjct: 518 GIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEA 577
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++D MV+ G P++ T
Sbjct: 578 A-KLLDVMVSIGLKPNEFT 595
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SYN L+ +T EA+++ + +VS+G+KPN +Y+ L+ + R A
Sbjct: 553 GVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDA 612
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
S++ EM+ G P T +
Sbjct: 613 YSLLREMLMNGPTPDVVTYNTI 634
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
L+ + R PP V N VI G +DRA F+ + G+ P +YN LI+ +
Sbjct: 328 LQMIDRGIPP--DVVTYNTVIDGLCKAQVVDRAKAVFQQMLDK-GVKPSNGTYNCLIHGY 384
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K E R+ E + + ++P+ Y+LL+D N A ++ D ++ G P
Sbjct: 385 LSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKP 442
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLT--PDIHSYNALIYAFGKLKKTFEAS 126
+V + N ++ G N + A + + GL+ PD+ SYN +I F + + +A
Sbjct: 265 NVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAY 324
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+F ++ G+ P+ ++Y+ ++D + A +V +M++ G PS T
Sbjct: 325 NLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGT 376
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + LD A FG TP++ SYN L+ F + EA + +
Sbjct: 234 NQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMA 293
Query: 134 ---SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
L P+ +SY+ +++ A ++ +M++ G P T V
Sbjct: 294 DDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTV 345
>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 426
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 26 EEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E SP Y L+ ++G D L+ + + P V N + L ++
Sbjct: 2 ERGLSPXRYTYSTLITHFGKEGL--FDDALSWLQKMEQDRVPGDLVLYSNLIEL-SRKLY 58
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+ PD+ +YN++I FGK K EA + + +GV P+ +SY
Sbjct: 59 DYSKAISIFSRLKRS-GIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSY 117
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 118 STLLTMYVENQKFLEALSVFAEM 140
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----DLDRAYQTFEAVGS-- 98
+ TL ++Y + + A + + I C++ L NI LD A + + S
Sbjct: 117 YSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMR 176
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236
Query: 159 AALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 237 KANNLIQEMHSRGIEPNAIT 256
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G + +A+ L E +T + F P Y V+ K + LD Y E +
Sbjct: 601 GKVNKAYQLLEEMKT----------KGFEPTVVTYGSVIDGLAK-IDRLDEAYMLFEE-A 648
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+++ +V + +I G + +D AY E + GLTP+++++N+L+ A K ++
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNVYTWNSLLDALVKAEE 707
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA F+ + L PN ++Y +L++ R A EM G PS
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V VI G A I LD AY FE S + ++ Y++LI FGK+ + EA +
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-RIELNVVIYSSLIDGFGKVGRIDEAYLI 679
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKK 181
E L+ G+ PN +++ L+DA + + AL M P++ T L K
Sbjct: 680 LEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Query: 182 VRR 184
VR+
Sbjct: 740 VRK 742
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + V C + ++ LE R Y A N +I+G + D AY
Sbjct: 276 YTSM--IGVLCKANRLDEAVEMFEHLEKNRRVPCTY----AYNTMIMGYGSAGKFDEAYS 329
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
E + G P + +YN ++ K+ K EA RVFE + PN +Y++L+D
Sbjct: 330 LLERQRAK-GSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDML 387
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDE 192
A + D M AG P+ T+ V R C +++DE
Sbjct: 388 CRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 5/157 (3%)
Query: 24 DMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+M++ +P S Y +++ R G LD F+L + + + +V +N ++
Sbjct: 368 EMKKDAAPNLSTYNILIDMLCRAG--KLDCA-FELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
LD A FE + TPD ++ +LI GK+ + +A +++E ++ + N++
Sbjct: 425 SQKLDEACAIFEQMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSI 483
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
Y+ L+ + ++ + +MVN +P + L
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLL 520
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
D Y LE RA+ SV A NC++ + +D A + FE + P++ +Y
Sbjct: 324 FDEAYSLLER-QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKD--AAPNLSTY 380
Query: 110 NALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
N LI GKL FE + + + G+ PN + +++VD ++ A ++ ++
Sbjct: 381 NILIDMLCRAGKLDCAFE---LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQ 437
Query: 167 M 167
M
Sbjct: 438 M 438
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FS +T+L A + + + +++ Q++ L EP +V +I G A +D
Sbjct: 168 FSAYTTLIGAFSAVNHS--DMMLTLFQQMQELGY-EP---TVHLFTTLIRGFAKEGRVDS 221
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + + SS L DI YN I +FGK+ K A + F + + G+KP+ ++Y+ ++
Sbjct: 222 ALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
L+ LV+ K ++ + VY Q+ L P + N ++ + LD+ ++ +
Sbjct: 228 LHGLVIV---KQYKLIGWVYDQM--LLDDHSP--DILTYNVLLFSSCKLGKLDQFHRLLD 280
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ G +PD H+YN L+Y GK K A + H+ +G PN + ++ L++
Sbjct: 281 EMARK-GFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRA 339
Query: 155 RDQKAALSVIDEMVNAGFAP 174
+ A DE+ N G P
Sbjct: 340 GNLDACKYFFDELGNNGCIP 359
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PDI +YN L+++ KL K + R+ + + G P+ +Y++L+ AAL+
Sbjct: 253 SPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALN 312
Query: 163 VIDEMVNAGFAPS 175
+++ M GF P+
Sbjct: 313 LLNHMREVGFGPN 325
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FSP Y +++ KG + L ++ L N R +V +I G + +LD
Sbjct: 287 FSPDFHTYNILLYVLGKGDKPLAAL--NLLNHMREVGFGPNVLHFTTLINGLSRAGNLDA 344
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
F+ +G++ G PD+ Y +I +F + + +A F+ ++ G PN +Y+ ++
Sbjct: 345 CKYFFDELGNN-GCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMI 403
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
K A S++ EM + G P+
Sbjct: 404 RGFCMVGKFKEAYSMLSEMESRGCRPN 430
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA- 159
G P++ +YN++I F + K EA + + S G +PN + YS LV ++L N +
Sbjct: 391 GQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLV-SYLRNAGKLGE 449
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRC 186
A VI MV G T K RRC
Sbjct: 450 AHKVIKRMVENGQYAHLMTKFKGYRRC 476
>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Cucumis sativus]
Length = 683
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L RA+ T+ + S ++PDI +YN L+ K EA + + G+ PNA +Y
Sbjct: 480 LKRAFMTYSTMLSER-VSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYE 538
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ H R+ K L + EMV GF P
Sbjct: 539 TLMCGHCKVRNTKECLRIYCEMVIKGFIP 567
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y L+ K++ T E R++ +V G P +Y++L+ K A
Sbjct: 529 GLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQA 588
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EM G +P+ T
Sbjct: 589 KELMNEMQTKGVSPTCTT 606
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL+PD+ +YN ++ K A ++ + S + PNA++ +++++ +
Sbjct: 318 MGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMEN 377
Query: 160 ALSVIDEMVNAGFAPSKET 178
A+ ++ EMV G P+ T
Sbjct: 378 AIDILKEMVLMGLYPTSTT 396
>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Brachypodium distachyon]
Length = 501
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N V+ + LD+ ++ + +G + GLTPD+H+YN L++ GK K A +
Sbjct: 281 VLTYNIVMRAKYMLGKLDQFHRLLDEMGKN-GLTPDLHTYNILLHVLGKGDKPLAALNLL 339
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ +G P+ + ++ L+D + +A DEM+ G P
Sbjct: 340 NYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKYFFDEMMKKGCEP 384
>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ +YNA++ F + + EA V ++ G+ P+ +Y+ +++ +++ + K A
Sbjct: 426 LLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEAF 485
Query: 162 SVIDEMVNAGFAP 174
V DEM+ GF P
Sbjct: 486 RVHDEMLQRGFVP 498
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
++W+ +R + G + PD+ S++++I F + + A FE + +G+ P+
Sbjct: 191 DVWEAERVFNEMLQCG----VVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDT 246
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMV 168
+ Y++L++ + N D AL V +EMV
Sbjct: 247 VIYTILINGYCRNNDVSGALKVRNEMV 273
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD ++N ++ + + +EA RVF ++ GV P+ +S+S ++ N + A
Sbjct: 171 GFCPDAATFNPVLVESFRKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRA 230
Query: 161 LSVIDEMVNAGFAP 174
L+ ++M G P
Sbjct: 231 LAYFEKMKGVGLVP 244
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G I++ NAL+ + K+ RV+ + + G+KP +Y+ L++ ++
Sbjct: 107 GFCVSINACNALLGSIVKV-------RVYLSEMEAKGLKPGLFTYNALINGLCKEGGYES 159
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A V+D+M+ GF P T V R+ D +RV
Sbjct: 160 AKCVLDKMLGVGFCPDAATFNPVLVESFRKEDVWEAERV 198
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI SYN +IYA+ + + +ASR+F + + G+ P+ ++Y+ + ++ + + A
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEA 753
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V+ M+ G P++ T +
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSI 775
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD ++YN LI + EA++VFE + + G + ++Y+ L+D + + K
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 159 AALSVIDEMVNAGFAPS 175
A+ V++EMV GF+PS
Sbjct: 332 EAMKVLNEMVLNGFSPS 348
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 29 FSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
FSP Y L+ A +R G LD +L+N + V ++ G ++
Sbjct: 345 FSPSIVTYNSLISAYARDGM--LDEA-MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVE 401
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A FE + ++ G P+I ++NA I +G K E ++F+ + G+ P+ ++++ L
Sbjct: 402 SAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTL 460
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ N V EM AGF P +ET
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP + +YN+L+Y + ++ + +++ G+KP+ +SY+ ++ A+ N + A
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 161 LSVIDEMVNAGFAP 174
+ EM N+G P
Sbjct: 719 SRIFSEMRNSGIVP 732
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PDI ++N L+ FG+ E S VF+ + G P +++ L+ A+ + A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200
++V M++AG P T V R E +++V A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P I +YN+LI A+ + EA + + G KP+ +Y+ L+ ++A
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 161 LSVIDEMVNAGFAPS 175
+S+ +EM NAG P+
Sbjct: 404 MSIFEEMRNAGCKPN 418
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q FE + ++ G + D +YNAL+ +GK + EA +V +V
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAA-GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ ++Y+ L+ A+ + A+ + ++M G P
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 10 TLNEFETAYG--------DSIIDM--EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
TLN + YG + ++D E F+P + Y ++ + + S E
Sbjct: 631 TLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P + + N VI + A + F + +S G+ PD+ +YN I ++
Sbjct: 691 LAKGIKP--DIISYNTVIYAYCRNTRMRDASRIFSEMRNS-GIVPDVITYNTFIGSYAAD 747
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRDQKAALSVIDEMVNAGFAPSKET 178
EA V +++ G +PN +Y+ +VD + NR +A L V D AP E
Sbjct: 748 SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807
Query: 179 LKKVRR 184
L+ + R
Sbjct: 808 LRLLER 813
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF-EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P + +YN ++ FGK+ + + + + E + S G+ P+A +Y+ L+ +
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V +EM AGF+ K T
Sbjct: 298 AAQVFEEMKAAGFSYDKVT 316
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKA 159
G + D++SY +LI AF + EA VF+ + G KP ++Y+++++
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNK 262
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S++++M + G AP T + C R
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+ ++L C+ L A + F + G +PDI + N+++ +G+ + +A+ V +++
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ +Y+ L+ H + D + ++ E++ G P
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKP 697
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ +YN ++ A + ++ +V + KPN ++Y L+ A+ ++
Sbjct: 519 GVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLM 578
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S+ +E+ + P LK + C +
Sbjct: 579 HSLAEEVYSGVIEPRAVLLKTLVLVCSK 606
>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14770, mitochondrial-like, partial [Cucumis
sativus]
Length = 697
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L RA+ T+ + S ++PDI +YN L+ K EA + + G+ PNA +Y
Sbjct: 494 LKRAFMTYSTMLSER-VSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYE 552
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ H R+ K L + EMV GF P
Sbjct: 553 TLMCGHCKVRNTKECLRIYCEMVIKGFIP 581
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ +Y L+ K++ T E R++ +V G P +Y++L+ K A
Sbjct: 543 GLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQA 602
Query: 161 LSVIDEMVNAGFAPSKET 178
+++EM G +P+ T
Sbjct: 603 KELMNEMQTKGVSPTCTT 620
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL+PD+ +YN ++ K A ++ + S + PNA++ +++++ +
Sbjct: 332 MGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMEN 391
Query: 160 ALSVIDEMVNAGFAPSKET 178
A+ ++ EMV G P+ T
Sbjct: 392 AIDILKEMVLMGLYPTSTT 410
>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 903
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P +V N I C + + + A + G+ PD+ +YN ++ A GK + +
Sbjct: 295 PVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEK 354
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
A +F + +G+KP+ +S++ + A + + ALS+ EM AG P+ T V
Sbjct: 355 AIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMS 414
Query: 185 RCV 187
C+
Sbjct: 415 ACI 417
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E LD ++F E + EP V N V+ C ++A + F + S G+ PD+
Sbjct: 318 EALDLLHFMRE-VGGVEP---DVVTYNIVVAACGKAGQGEKAIEIFREM-SEVGIKPDVI 372
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
S+ I A G + EA +F + GV+PN ++++ ++ A + + AL E+
Sbjct: 373 SFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFFTEV 432
Query: 168 V 168
V
Sbjct: 433 V 433
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P + Y A I A G+ K EA + + + GV PN SYS + A + +
Sbjct: 592 GVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQG 651
Query: 161 LSVIDEMVNAGFAPSK 176
L++++EM G P++
Sbjct: 652 LALLNEMPALGLTPNE 667
Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G P+ + NA + A GK + EA + + G++ + +SY+ + A +T D
Sbjct: 151 AELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDW 210
Query: 158 KAALSVIDEM-VNAGFAPSKETLKKVRRRCVR--EMDEESNDRVE 199
+ ALS+I EM G P+ T + + C R + DE ++ +E
Sbjct: 211 ELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIE 255
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GLTP+ Y A I G + A F +++ G++P + Y+ V A +
Sbjct: 660 ALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVD 719
Query: 159 AALSVIDEMV-NAGFAPSKETLKKVRRRC 186
AL ++ EM AG P+++T V C
Sbjct: 720 LALELLSEMKEEAGIEPNEQTYAAVILAC 748
Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TP++ SY+A I A GK + + + + +LG+ PN Y+ + + A
Sbjct: 627 GVTPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERA 686
Query: 161 LSVIDEMVNAGFAPS 175
++ M+ +G P+
Sbjct: 687 VATFRSMIASGIQPT 701
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 45/107 (42%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+RA V + NC I C D + A + + +G+ P+ +Y A I G+
Sbjct: 185 ARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCG 244
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
K EA+ + + GV YS + +A +AA S + E+
Sbjct: 245 KADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREI 291
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G + L+ F + G PDI +YN LI + K +K A F
Sbjct: 324 VVTYNSLIDGYGKVGSLEEVASLFNEM-KDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 382
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G+KPN ++YS L+DA + A+ + +M G P++ T
Sbjct: 383 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFT 431
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+ RA++ F + ++ GL P++ +Y+ LI AF K A ++F + G+ PN +Y+
Sbjct: 375 MPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYT 433
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171
L+DA+ + A ++++M+ AG
Sbjct: 434 SLIDANCKAGNLTEAWKLLNDMLQAG 459
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ +I +Y AL+ K + EA VF ++ G+ PN Y+ LV ++ + A
Sbjct: 459 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 518
Query: 161 LSVIDEMVNAGFAP 174
+ ++ +M P
Sbjct: 519 MKILKQMTECNIKP 532
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 40/73 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ Y AL++ + K ++ +A ++ + + +KP+ + Y ++ H + R +
Sbjct: 494 GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEET 553
Query: 161 LSVIDEMVNAGFA 173
+++EM + G +
Sbjct: 554 KLILEEMKSRGIS 566
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +YN +I K + R+F + +G+ P+ ++Y+ L+D + +
Sbjct: 284 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 343
Query: 161 LSVIDEMVNAGFAP 174
S+ +EM + G P
Sbjct: 344 ASLFNEMKDVGCVP 357
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GL PD +YN +I + + +T +A ++ + +KPN ++Y+ LV +
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRC 186
A +++EMV+AGF+PS T ++V + C
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQAC 669
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG LD A+ T+ + ++P+I ++N L+ + + EA V +
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQ-NISPNIATFNTLLGGLESVGRIGEAGTVLIEME 791
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++PN ++Y +L H ++ A+ + EMV GF P T
Sbjct: 792 KSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVST 836
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG F P + +YNALI F K +A +F+ + GV P + +Y +LV
Sbjct: 824 EMVGKGF--VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
R+ + +M GF+PSK TL + R
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICR 912
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ D+ +Y AL+ GK KT E +S + PN ++Y++L+DA +
Sbjct: 337 SRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVD 396
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A V+ EM +P+ T V
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSV 420
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 102 LTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
++P++ +++++I F G L K E R+ + G+ PN ++Y L+D + Q
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER---GINPNVVTYGTLIDGFFKFQGQD 466
Query: 159 AALSVIDEMVNAGFAPSK 176
AAL V +M+ G +K
Sbjct: 467 AALEVYHDMLCEGVKVNK 484
>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rhodocnemis]
Length = 345
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + G PD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 2 DYSKAISIFSRL-KRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 60
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 61 STLLTMYVENKKFLEALSVFSEM 83
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ SYN L+ +G + EA +F + ++ N ++Y+ ++ + + +
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180
Query: 160 ALSVIDEMVNAGFAPSKET 178
A ++I EM + G P+ T
Sbjct: 181 ANNLIQEMQSRGIEPNSIT 199
>gi|357127701|ref|XP_003565517.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Brachypodium distachyon]
Length = 579
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V VI G ++ D+D A + ++ + + G+ P++ ++ LI+ + + K+ ++A +V
Sbjct: 377 NVVTFTTVISGWCSVADMDNATRVYDKMRGA-GVRPNLRTFETLIWGYSEQKQPWKAEKV 435
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + GV+P +YSL+ DA A+ +++ A +P RRR V
Sbjct: 436 LQMMKDAGVRPKQSTYSLVADAW-------KAVGIVENANRALGSPD-----DCRRRNVS 483
Query: 189 EMDE---ESNDRVEALAK 203
+ DE S+D ++ L +
Sbjct: 484 DHDEPGRHSDDEIDRLQR 501
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + ++N LI FG + E+ R+F+ L++ V+PN +Y++LV A R + A
Sbjct: 128 GCRPTVSTFNTLIKGFGIAGRPEESQRIFD-LMTAWVRPNLTTYNILVKAWCDQRRMEQA 186
Query: 161 LSVIDEMVNAGFAP 174
+V+ M A P
Sbjct: 187 WAVVGRMRPAAVEP 200
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 54/122 (44%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
FG+ PDI +Y+ + A L ++VF+ ++ G++P+ YS+L ++ +
Sbjct: 301 QFGIKPDIVTYSHQLNALSSLGHMARCAKVFDRMLEAGIEPDPQVYSILAKGYVRAQQPG 360
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
A ++ +M G P+ T V D ++ RV + +R N + ++
Sbjct: 361 KAEELLQQMGRLGVRPNVVTFTTVISGWCSVADMDNATRVYDKMRGAGVRPNLRTFETLI 420
Query: 219 FN 220
+
Sbjct: 421 WG 422
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ ++ +I + + A+RV++ + GV+PN ++ L+ + +
Sbjct: 372 LGVRPNVVTFTTVISGWCSVADMDNATRVYDKMRGAGVRPNLRTFETLIWGYSEQKQPWK 431
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V+ M +AG P + T
Sbjct: 432 AEKVLQMMKDAGVRPKQST 450
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I +GK K EA + + + GV PN +SY
Sbjct: 242 DYSKAISIFSRLKRS-GITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSY 300
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N ALSV EM
Sbjct: 301 STLLSVYVENHKFLEALSVFAEM 323
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 46 GFETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----------DLDRAYQTF 93
+ TL SVY + A + + +NC + L NI + DR + +
Sbjct: 299 SYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSL 358
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ + P++ SYN ++ +G+ + EA +F + ++ N ++Y+ ++ +
Sbjct: 359 RKMD----IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 414
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ + A +++ EM + G P+ T
Sbjct: 415 TMEHEKATNLVQEMQSRGIEPNAIT 439
>gi|124359838|gb|ABN06149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 143
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
VA N I GC D A F+++ G+ P+IH+Y +I K+K+ EA +F
Sbjct: 31 VAIFNSFIDGCFPSNQPDMAKDIFDSMDQR-GVVPNIHNYTMMIKGLCKIKRVDEALNLF 89
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
E + S + P+A Y+ ++D + AL ++ EM + G
Sbjct: 90 EEMRSKNMTPDAKIYTSIIDGLFKSGRDTCALKLVGEMHDKGL 132
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI G + ++ A + F+ + + PDI +Y ++I+ K K EA +F ++
Sbjct: 353 VISGFCKLGNVSAACKLFDEMRRK-KIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVK 411
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++P+ ++Y+ L+D + + K A SV ++MV G P+ T
Sbjct: 412 GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVT 454
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +Y ALI + K + EA V +V G+ PN ++Y+ L D N + A
Sbjct: 412 GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVA 471
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM G P+ T
Sbjct: 472 NELLHEMSRKGLQPNVYT 489
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++++YN ++ K+ + ++ E + G P+ ++Y+ L+DA+ + A
Sbjct: 482 GLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKA 541
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRR-CVREMDEESNDRVEALAKK 204
++ M+N P+ T + C+ M E+ +E + +K
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEK 586
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP++ +Y AL K + A+ + + G++PN +Y+ +V+ + +
Sbjct: 447 GLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQT 506
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +++EM AGF P T
Sbjct: 507 VKLMEEMDLAGFYPDTIT 524
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
I +LD+ + + + GL PD + YN +I K + EA ++ + GV P+ +
Sbjct: 290 IGELDKVLKLVDELKGK-GLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
Y+ ++ + AA + DEM P T V
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSV 388
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN++I L + +A +VFE ++ G PN ++YS L+ ++ A
Sbjct: 312 GVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKA 371
Query: 161 LSVIDEMVNAGFAPSKET 178
L ++ EMVN+G P T
Sbjct: 372 LFLLGEMVNSGLNPDVVT 389
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ PD+ +YN+LI+ + EA+ + +++ G+ PN ++++LVD +
Sbjct: 239 TSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMI 298
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A +++ MV+ G P T V
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTYNSV 323
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++N L+ F K A + +V +GV+P+ ++Y+ ++ H A
Sbjct: 277 GIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDA 336
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V + M++ GF P+ T
Sbjct: 337 VKVFELMIHKGFLPNLVT 354
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P T Y L++ K ++ + +L N R++ ++ ++ A ++A
Sbjct: 251 PSTETYTLLINLHGKASQSY--MALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAE 308
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ FE + G PD+++YNAL+ A+ + + A+ +F + +G +P+ SY+++VDA
Sbjct: 309 EIFEQLQED-GHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 367
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + A +V +EM G P+ ++
Sbjct: 368 YGRGGLHEDAQAVFEEMKRLGITPTMKS 395
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD SYN ++ A+G+ +A VFE + LG+ P S+ LL+ A+ D
Sbjct: 352 MGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAK 411
Query: 160 ALSVIDEMVNAGFAP 174
+++E+ +G P
Sbjct: 412 CEDIVNELHESGLEP 426
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
DI +YN LI +G+ + +F+ L + +KP+ ++++ + A+ + L +
Sbjct: 462 DISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIF 521
Query: 165 DEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218
+EM++AG P T K + C S D++E + IR +N + +L
Sbjct: 522 EEMIDAGCHPDGRTAKVLLSSC------SSEDQIEQVTTV--IRTMHKNMETVL 567
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 25 MEEIFSP--FTSLYPLVVA-CSRKGFETLDS---VYFQLENLSRAEPPYKSVAAINCVIL 78
M E+ P SL L+ A C G T+D+ ++ ++ N R PP+ +I
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSG--TMDAALRIFREMPN--RGCPPHSYTYGT--LIX 199
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
G + + A + F+ + + +P + +Y +LI+ + K A R+ E + S G+K
Sbjct: 200 GLCRLGKIGEAKELFKEMETK-ACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIK 258
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
PN +YS L+D H + AL ++D MV+ P+ T
Sbjct: 259 PNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMIT 298
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G DLD A + E + S G+ P++ +Y++L+ K + A +
Sbjct: 225 TVVTYXSLIHGLCQSKDLDSAIRLLEEMASK-GIKPNVFTYSSLMDGHCKSGCSSRALEL 283
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ +VS PN ++YS LV + A+ ++D M G P K+
Sbjct: 284 LDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKI 337
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
CS + E LD + +SR P ++ + ++ G L A + + +
Sbjct: 275 GCSSRALELLDMM------VSRRHLP--NMITYSTLVHGLCKEGKLQEAVEILDRMKLQ- 325
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
GL PD Y +I F + K EA+ + +V G+ PN +++SL V H
Sbjct: 326 GLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIH 376
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K A+N V+ G + A E++ GL P++ ++N+LI F + S
Sbjct: 194 KDTVALNAVVAGYVQQGAANEALGLVESM-KLMGLKPNVVTWNSLISGFSQKGDQGRVSE 252
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186
+F +++ GV+P+ +S++ ++ + N K A +M++ GF P+ T+ + C
Sbjct: 253 IFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPAC 311
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 31 PFTSLYPLVVACSRKGFETLDSV--YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P L+ ++ KG D++ + ++E L A +V N +I G LD
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAP----NVVTYNNIIHGLCKSGRLDE 309
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
AY+ E + ++P + +Y+ I KL+K EA+ V + + LG PN + Y+ L+
Sbjct: 310 AYRFKEKMVKE-KVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLI 368
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
D + + AL + D+M++ G +P+ TL
Sbjct: 369 DGYCKMGNISEALKIRDDMLSKGISPNSVTL 399
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+L + ++ S A + ++ G NI +D A + + GL P++ Y +I
Sbjct: 661 FRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKE-GLLPNVVCYTTIIG 719
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ KL + + + V + + S + PN +Y++++D K A +++EM G P
Sbjct: 720 GYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILP 779
Query: 175 SKET 178
T
Sbjct: 780 DAVT 783
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC + ++ E + G+ PDI+++N L++ K EASR++
Sbjct: 540 NTLISGCCKEGKVKEGFELKEEMVKK-GIQPDIYTFNLLLHGLCNADKIDEASRLWHECK 598
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
G PN +Y +++D + + ++++E+V+
Sbjct: 599 KNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVS 634
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L ++Y+ ++ + G+ PD+H ++ +I AF K + +A +F + LGV PN ++Y
Sbjct: 236 ELKKSYEVYDFICLG-GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTY 294
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ ++ + A ++MV +PS
Sbjct: 295 NNIIHGLCKSGRLDEAYRFKEKMVKEKVSPS 325
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R E +V +I G + + +++ + + SS + P+ +Y +I F KL K
Sbjct: 703 RKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM-SSHNIHPNKFTYTIMIDGFCKLGK 761
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
T EA+++ + G+ P+A++Y+ + + A V DEM
Sbjct: 762 TKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM 807
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ C ++G + + + E + + P + N ++ G N +D A + +
Sbjct: 542 LISGCCKEG-KVKEGFELKEEMVKKGIQP--DIYTFNLLLHGLCNADKIDEASRLWHECK 598
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G P++++Y +I + K K E + LVS ++ N++ Y+ L+ A+ N +
Sbjct: 599 KN-GYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657
Query: 158 KAALSVIDEMVNAGFAPSKET 178
AA + D+M + G S T
Sbjct: 658 NAAFRLRDDMKSRGVLLSCAT 678
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G P+ YN LI + K+ EA ++ + ++S G+ PN+++ + L+ +
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQI 412
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A +V++EM+ G ++ + V
Sbjct: 413 GQAENVLEEMIGRGLPINQGSFSMV 437
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+ INC+ DLD A+ F+ + G PD+ +Y+ LI FGK K A +F+
Sbjct: 257 SMINCL----GKNGDLDEAHMLFKDMQEK-GYDPDVFTYSILIECFGKSNKVDMACSLFD 311
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
+++ G PN ++Y++L+D + + A + + + G AP T + R
Sbjct: 312 EMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSILER 365
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN +I +FG++ +AS +FE + KP+ ++Y+ +++ N D A
Sbjct: 212 GVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEA 271
Query: 161 LSVIDEMVNAGFAP 174
+ +M G+ P
Sbjct: 272 HMLFKDMQEKGYDP 285
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G+T D+ YN + A GKLK+ S +++ + + GV P+ +Y++++ +
Sbjct: 177 GITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISS 226
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GL PD +YN +I + + +T +A ++ + +KPN ++Y+ LV +
Sbjct: 582 NMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVE 641
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRC 186
A +++EMV+AGF+PS T ++V + C
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQAC 669
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +ILG LD A+ T+ + ++P+I ++N L+ + + EA V +
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQ-NISPNIATFNTLLGGLESVGRIGEAGTVLIEME 791
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G++PN ++Y +LV H ++ A+ + EMV GF P T
Sbjct: 792 KSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVST 836
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
E VG F P + +YNALI F K +A +F+ + GV P + +Y +LV
Sbjct: 824 EMVGKGF--VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSR 881
Query: 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
R+ + +M GF+PSK TL + R
Sbjct: 882 IRNGTEVKKCLKDMKEKGFSPSKGTLSFICR 912
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 102 LTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
++P++ +++++I F G L K E R+ + G+ PN ++Y L+D + Q
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKER---GINPNVVTYGTLIDGFFKFQGQD 466
Query: 159 AALSVIDEMVNAGFAPSK 176
AAL V +M+ G +K
Sbjct: 467 AALEVYHDMLCEGVEVNK 484
>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
Length = 378
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 30 SPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
+P Y +++ C R + + +++++ +P VA C+++G N +D
Sbjct: 137 APNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVG-CQP---DVATYTCLLVGYGNAKRMD 192
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
R E + + G PD +YNALI +A+R+++ ++ G++P +Y+++
Sbjct: 193 RVTALLEEM-TQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMM 251
Query: 148 VDAH-LTNRDQKAALSVIDEMVNAGFAP 174
+ ++ L R+ +V +EM G P
Sbjct: 252 MKSYFLGGRNYMMGCAVWEEMHRKGICP 279
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V + NC+++ A A Q F+ + + PD+ SY AL+ A+ + EA RV
Sbjct: 35 GVESFNCLLVALAQEGLGREANQVFDRMRDRY--APDLRSYTALMLAWCNARNLVEAGRV 92
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCV 187
+ ++ G+KP+ + ++ +++ L + + A+ + + M G AP+ T +R C
Sbjct: 93 WNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCK 152
Query: 188 R-EMD 191
R +MD
Sbjct: 153 RGKMD 157
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 38 LVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+VA +++G + V+ ++ + R P +S A+ +L N +L A + + +
Sbjct: 42 LLVALAQEGLGREANQVFDRMRD--RYAPDLRSYTAL---MLAWCNARNLVEAGRVWNEM 96
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ GL PD+ +N +I + ++ EA ++FE + + G PN +Y++L+ H
Sbjct: 97 LEN-GLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGK 155
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
A+ +EM + G P T
Sbjct: 156 MDMAMRCFEEMQDVGCQPDVAT 177
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 101 GLTPDIHSYNALIYA-FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
GL P IH+YN ++ + F + V+E + G+ P+ SY++ ++ H+ + +
Sbjct: 240 GLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEE 299
Query: 160 ALSVIDEMVNAGF 172
A I+EM+ G
Sbjct: 300 ACKYIEEMIQKGM 312
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FE + + G P++ +Y LI K K A R FE + +G +P+ +Y+ L+
Sbjct: 124 AVKMFELMKAK-GPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 182
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + ++++EM G P T
Sbjct: 183 VGYGNAKRMDRVTALLEEMTQKGCPPDGRT 212
>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE 94
L+ LV+ K ++ + VY Q+ L P + N ++ + LD+ ++ +
Sbjct: 228 LHGLVIV---KQYKLIGWVYDQM--LLDDHSP--DILTYNVLLFSSCKLGKLDQFHRLLD 280
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ G +PD H+YN L+Y GK K A + H+ +G PN + ++ L++
Sbjct: 281 EMARK-GFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRA 339
Query: 155 RDQKAALSVIDEMVNAGFAP 174
+ A DE+ N G P
Sbjct: 340 GNLDACKYFFDELGNNGCIP 359
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PDI +YN L+++ KL K + R+ + + G P+ +Y++L+ AAL+
Sbjct: 253 SPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALN 312
Query: 163 VIDEMVNAGFAPS 175
+++ M GF P+
Sbjct: 313 LLNHMREVGFGPN 325
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA- 159
G P++ +YN++I F + K EA + + S G +PN + YS LV ++L N +
Sbjct: 391 GQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLV-SYLRNAGKLGE 449
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRC 186
A VI +MV G T K RRC
Sbjct: 450 AHKVIKQMVENGQYAHLMTKFKGYRRC 476
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FSP Y +++ KG + L ++ L N R +V +I G + +LD
Sbjct: 287 FSPDFHTYNILLYVLGKGDKPLAAL--NLLNHMREVGFGPNVLHFTTLINGLSRAGNLDA 344
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
F+ +G++ G PD+ Y +I +F + + +A F+ ++ G PN +Y+ ++
Sbjct: 345 CKYFFDELGNN-GCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMI 403
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
K A S++ EM + G P+
Sbjct: 404 RGFCMVGKFKEAYSMLSEMESRGCRPN 430
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC ++ A + + + G PD+ ++N L++A+ L K E + + +
Sbjct: 506 NIMIRGCCKDSKMEEAIKLHGDM-TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMK 564
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G++P+ +SY ++D H +D + A + E+++ G P+
Sbjct: 565 TEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPN 606
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
Y +I + KL K EA FE + S G+ PN ++Y+ L+ A+ + + + A + DEM
Sbjct: 679 GYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEM 738
Query: 168 VNAGFAPSKETLKKVRRRC--VREMDEESNDRVE 199
V +G P T + RC V +D++ E
Sbjct: 739 VGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAE 772
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TP + ++ LI + ++ E V + + LGV PN + Y+ L+ H A
Sbjct: 286 GMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQA 345
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
L + DEMV P+ T + + +E + E +R+
Sbjct: 346 LRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERI 383
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ N+ ++ + + + + GL PDI SY +I K K +A L+
Sbjct: 541 NTLLHAYCNLGKMEETFHLLDQMKTE-GLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN Y+ L+ + N D A+ ++ M + G P+ T
Sbjct: 600 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVT 644
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SR PP S+ N + LD A + F+ + S + + +SY A+I A K
Sbjct: 178 SRGAPP--SIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAG 235
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + L G++P ++Y++L+DA + + A + M G PS
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPS 290
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V +I G + + A FE + S G++P+ +Y L+YA+ K + EAS++
Sbjct: 676 GVIGYTIMIQGYCKLGKMVEAVAYFEEM-RSRGISPNKLTYTTLMYAYSKSGNSEEASKL 734
Query: 129 FEHLVSLGVKPNAMSYSLLV 148
F+ +V GV P+ ++Y L+
Sbjct: 735 FDEMVGSGVIPDNITYGTLI 754
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A++ + + S G TP++ +YN LI K KT +A + E LVS G P+ ++Y+
Sbjct: 382 IDEAFELVKEM-SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYT 440
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++VD AL +++ M+ G PS
Sbjct: 441 IIVDGLCKEGRLDKALKMVEGMLKRGCTPS 470
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N V+ G +D A+ E++ S+ G PD+ SYN +I K K EA +V
Sbjct: 572 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQV 630
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ ++ G+ P+A++Y+ L+ A+ ++ M+ AG P T
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 680
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD FE + G P+I +YN ++ K K EA E + S G P+ +SY+
Sbjct: 554 LDEIPNVFEDMACR-GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYN 612
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D K A V+D+M+ AG P T
Sbjct: 613 IIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 645
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S N +I G ++DRA + SS G PD+ +Y+ L K + EA +
Sbjct: 330 SCCTYNTLISGLCKQQNVDRAKDLVDEFVSS-GFVPDVVTYSILADGLCKRGRIDEAFEL 388
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + G PN ++Y+ L+D + A +++ +V++GF P
Sbjct: 389 VKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVP 434
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
VI+G LDRA + + + GL H++N LI AF K K+ EA + +V
Sbjct: 787 VIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQR 846
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G P+ ++Y++++ A + DEM G S
Sbjct: 847 GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 886
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 11/172 (6%)
Query: 6 RAFITLNEFETAYGDSIIDMEEI--FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA 63
++ +N+ + A+ +++D ++ F P S+Y ++ K D++ N+
Sbjct: 168 KSLCQMNQIDKAF--TMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEI-FRNI--- 221
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
P A N +I G D D A + + + + PD+ +YN LI K KT
Sbjct: 222 --PSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNER-KVAPDVFTYNILIDGLCKASKTD 278
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+AS + +V GV P+ ++++ ++D + A S++ M PS
Sbjct: 279 KASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPS 330
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P + +YN +I KL K +A +F+ + G+ +++SY++L+ K A
Sbjct: 847 GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 906
Query: 161 LSVIDEMVNA 170
L V++EM ++
Sbjct: 907 LQVLEEMASS 916
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD+A + E + G TP + +Y AL+ + + EA +F+ +VS +A++Y
Sbjct: 452 LDKALKMVEGMLKR-GCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYV 510
Query: 146 LLVDAHLTNRDQKAALSVID 165
LV+ + + K A V+D
Sbjct: 511 SLVNGYCKSSRTKEAQKVVD 530
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
TP I YNAL+ + K + E VFE + G PN +Y++++D + A
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594
Query: 163 VIDEMVNAGFAP 174
++ M +AG P
Sbjct: 595 FLESMHSAGCVP 606
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E + R P N ++ G +RA+ AV + P +YN LI
Sbjct: 286 EMVDRGVTP--DTVTFNSIMDGLCKAGKFERAHSLL-AVMAERNCRPSCCTYNTLISGLC 342
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
K + A + + VS G P+ ++YS+L D A ++ EM G P+
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPN 400
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN L+ F K ++ +A + ++++ GV P+ ++Y+ L+ A
Sbjct: 638 GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 697
Query: 161 LSVIDEMVNAGFAPSKETL------KKVRRRCVRE----MDEESNDRVEALAKKFDI--- 207
++ EM+ G S T + + C+++ MD + VEA ++I
Sbjct: 698 YELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 757
Query: 208 RMNTENR 214
R+ E R
Sbjct: 758 RLCKEGR 764
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V N +I GC + +D A + F E G + + P + SY LI + + + +A R+
Sbjct: 185 VVTYNTMINGCYRVKKMDEAEKYFVEMKGRN--IEPTVVSYTTLIKGYVSVDQVDDALRL 242
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
E + G+KPNA++YS L+ A S++ EMV+ AP ++
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKDNSI 293
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 23 IDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+ +E + +L+ +++ R+G + YF + LS P + N +I G
Sbjct: 109 LGVERTIKSYDALFKVIM---RRGRFMMAKRYFN-KMLSEGIEPTRH--TFNVLIWGFFL 162
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+D A + FE + S ++PD+ +YN +I ++KK EA + F + ++P +
Sbjct: 163 SGKVDTANRFFEDMKSR-EISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVV 221
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
SY+ L+ +++ AL +++EM G P+ T
Sbjct: 222 SYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAIT 257
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYK 68
L E E A+ + I + P T +Y ++ C R ++++ SR P
Sbjct: 332 LAEAEEAFSEMI---RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH--SRDITP-- 384
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V +I G I D+ A + F + GL PD ++ LI + K +A RV
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
H++ G PN ++Y+ L+D D +A ++ EM G P+
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +Y A+I F ++ EA ++F + G++P++++++ L++ + K A
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
V + M+ AG +P+ T + +E D +S
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 85 DLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++D+A + E +G GL P I ++N L+ F + ++ +++ G+ PNA +
Sbjct: 541 EMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEESNDRVEAL 201
++ LV + + KAA ++ +M + G P +T + V+ C R M E E
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 202 AKKFDIRMNT 211
K F + ++T
Sbjct: 659 GKGFSVSVST 668
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G DLD A + + GL P+I +YN+++ K EA ++
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G+ + ++Y+ L+DA+ + + A ++ EM+ G P+
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD +Y L+ K + EA +F+ + G + +YS+L+ L +
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683
Query: 159 AALSVIDEMVNAGFAPSKE 177
A V D+M G A KE
Sbjct: 684 EAREVFDQMRREGLAADKE 702
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD H YN +I FG+ ++ +A F + G++P+ +S++ L+DA A
Sbjct: 417 GVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEA 476
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ +MVN G AP+ +T V
Sbjct: 477 RKLYYKMVNDGCAPTAQTFNIV 498
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P ++N +I+ G+ K+ + + + E + S G+ PN ++Y+ LVD + R + A
Sbjct: 487 GCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDA 546
Query: 161 LSVIDEMVNAGFAPS 175
+ + M G PS
Sbjct: 547 VECLQTMKEDGMGPS 561
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ S+N+LI A K + EA +++ +V+ G P A ++++++ ++
Sbjct: 452 GIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDV 511
Query: 161 LSVIDEMVNAGFAPS 175
+++EM + G P+
Sbjct: 512 NEMVEEMRSKGMFPN 526
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 12/188 (6%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
F P Y V+ R G + F+L +AE N +I C +
Sbjct: 207 FPPDVVSYTHVIQACRHGVVDI-YTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNE 265
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
E + +S GL D SY +L+ + GK +T EA + E + G++PN +Y+ L+
Sbjct: 266 GMFFLEKLQAS-GLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLL 324
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN--DRVEALAKKF- 205
+ +K L ID V + ++ K+ + + + DR+EAL ++
Sbjct: 325 GGY----SRKGQLQQID-TVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMR 379
Query: 206 --DIRMNT 211
DIR NT
Sbjct: 380 DCDIRPNT 387
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N LI AF ++ EA VFE++ G+ + ++Y+ L+ A + V DEM+
Sbjct: 601 NLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIK 660
Query: 170 AGFAP---SKETLKKVRRRCVREM 190
AG P +K+ L+ R RE+
Sbjct: 661 AGCRPDGKAKDMLRSAFRFKEREL 684
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+SF T D+ + +I+ +G+ +K +A V E LG Y+ LV A+ NRD
Sbjct: 137 NSFCRTYDVLD-SVVIHGYGRERKLHKALEVAE---KLGSNLQRRGYNALVGAYAQNRDY 192
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRC 186
AL + +M GF P + V + C
Sbjct: 193 GKALETLSKMKTLGFPPDVVSYTHVIQAC 221
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S +S + P ++ N +I G A D+ A + + +
Sbjct: 680 LLKACCKSG--RMQSALAVTREMSSQKIP-RNTFVYNILIDGWARRGDVWEAAELMQQMK 736
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ + + +GVKPN +Y+ L+
Sbjct: 737 QE-GVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLP 795
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ AL EM +AG P K
Sbjct: 796 EKALKCFQEMKSAGLKPDK 814
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C D+ RA +T + + G+ P+I +Y LI+ + + +A + F+ + S G
Sbjct: 751 INACCKAGDMQRATKTIQEM-EVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAG 809
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ + + EM+ T +C+R++
Sbjct: 810 LKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIECELTVDMGTAVHW-SKCLRKI 868
Query: 191 DEESNDRVEALAKKFDIRMNTEN 213
+ + EAL K F N+ N
Sbjct: 869 ERTGGELTEALQKTFPPDWNSYN 891
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + SY LI + GK+ K E S++ E G+K N +YS+L++ + +D
Sbjct: 459 GFTPSVISYGCLINLYIKIGKVSKALEVSKMME---VAGIKHNMKTYSMLINGFVRLKDW 515
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRR---------RCVREMDEESNDRVEALAKKF 205
A +V +++V G P + R R +R + E +R + F
Sbjct: 516 ANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTF 572
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 15/191 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACS-RKGFETLDSVYFQLENL 60
GD++RA L F+ I F+ + LV C K E LD + L +
Sbjct: 583 GDMRRA---LEIFDMMRWSGCIPTVHTFNAL--ILGLVEKCQMEKAVEILDEM--SLAGI 635
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S E Y ++ + G A++ D +A++ F + + GL D+++Y AL+ A K
Sbjct: 636 SPNEHTYTTI------MHGYASLGDTGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSG 688
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ A V + S + N Y++L+D D A ++ +M G P T
Sbjct: 689 RMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 748
Query: 181 KVRRRCVREMD 191
C + D
Sbjct: 749 SFINACCKAGD 759
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE V GL PD+ YN +I AF + A R + +
Sbjct: 505 LINGFVRLKDWANAFAVFEDVVKD-GLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 563
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ ++ + D + AL + D M +G P+ T
Sbjct: 564 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTF 607
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++ +Y+ LI F +LK A VFE +V G+KP+ + Y+ ++ A + A
Sbjct: 494 GIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRA 553
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+ + EM P+ T + R D
Sbjct: 554 IRTVKEMQKERHRPTTRTFMPIIHGFARSGD 584
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 102 LTPDIHSYNALIYAFGKLKK----------TFEASR--------VFEHLVSLGVKPNAMS 143
L + ++ A++ AF ++KK T+ A R FE + + G++P +
Sbjct: 267 LETEPENWQAVVQAFERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHV 326
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
Y+ L+ A+ RD + ALS + +M G S T + + D E+ D AK
Sbjct: 327 YTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAK 386
Query: 204 KFDIRMNTENRKNILF 219
+ +N NI++
Sbjct: 387 ERHTTLNAIIYGNIIY 402
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 25 MEEI----FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVI 77
MEE+ FSP Y +V C K F+T VY L+ + R PP I
Sbjct: 293 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT---VYALLDEMRKRRCPPNVVTYTILMHA 349
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
LG A A TF+ + G+ PD YN+LIY G+ + +A V E + + G+
Sbjct: 350 LGKAG--RTREALDTFDKLKED-GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 406
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
PN +++ L+ A + + AL ++ +M P +T + + C +
Sbjct: 407 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 457
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K A+N ++ + RA F+ + + + PD +S+N L++ + K + EA
Sbjct: 234 KDTKAMNVLLDTLCKERSVKRARGVFQELRGT--IPPDENSFNTLVHGWCKARMLKEALD 291
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
E + G P+ ++Y+ LV+A+ +D + +++DEM
Sbjct: 292 TMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 331
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ D + N L+ K + A VF+ L + P+ S++ LV R K
Sbjct: 230 FGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARMLKE 288
Query: 160 ALSVIDEMVNAGFAPS 175
AL ++EM GF+PS
Sbjct: 289 ALDTMEEMKQHGFSPS 304
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI +Y L+ K + + H+ + P+ +Y+LLV N +
Sbjct: 443 PDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLF 502
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI-RMNTENRKNI 217
++EMV+ GFAP +ET V M++ ++++ KK + R N K++
Sbjct: 503 LEEMVSKGFAPKQETFDLV-------MEKLEKRNLQSVYKKIQVLRTQVTNLKHM 550
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V N ++ G ++ + E + SS G P+ +Y +L+YA + +T +
Sbjct: 430 PP--NVVTYNVLVHGLCKSGRIEEPCEFLEEMVSS-GCVPESMTYGSLVYALCRASRTDD 486
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A ++ L S G P+ ++Y++LVD + + A++V++EMV G P
Sbjct: 487 ALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 536
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 83 IWDLDRAYQTFEAVGSSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
I L + QT EA G P++ +YNAL+ K K A + E +V GV P
Sbjct: 232 IDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTP 291
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ ++YS+LVDA AL ++ M + G P+ T +
Sbjct: 292 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++RA+ E++ G+TPD+ +Y+ L+ AF K + EA +
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDK-GVTPDVITYSVLVDAFCKASRVDEALEL 315
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ S G PN ++++ ++D + A + ++ N P K T
Sbjct: 316 LHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVT 365
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG--LTPDIHSYNALIYAFGK 118
SR P +V N +I G + DR+ + F+ + L PD ++N LI K
Sbjct: 321 SRGCTP--NVVTFNSIIDG---LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACK 375
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+AS +FE +V+ ++P+ M++ L+D +AA ++D M N G P+ T
Sbjct: 376 AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 435
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SVA N V+ + RA + F + G+ P I +YN +I K +
Sbjct: 43 RSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGME 102
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LK 180
+FE LV G P+ ++Y+ L+D+ D + A + M + G P+ T L
Sbjct: 103 LFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLC 162
Query: 181 KV-----RRRCVREMDEESND 196
KV R ++EM +S D
Sbjct: 163 KVGRIDEARELIQEMTRKSCD 183
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
AC FE +++ ++ +++ P V +I G ++ A + +G+
Sbjct: 373 ACKAGNFEQASALFEEM--VAKNMQP--DVMTFGALIDGLCKAGQVEAARDILDLMGN-L 427
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN L++ K + E E +VS G P +M+Y LV A A
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487
Query: 161 LSVIDEMVNAGFAPSKET 178
L ++ ++ + G+ P T
Sbjct: 488 LQLVSKLKSFGWDPDTVT 505
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
++ L RA +T +A+ SFG PD +YN L+ K KT +A V E +V G
Sbjct: 475 VYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH 534
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+P++ +++ + + + ++ ++ G P T +
Sbjct: 535 QPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 579
>gi|295674287|ref|XP_002797689.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280339|gb|EEH35905.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1508
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S A + + + D R F+A + +G ++ N LI+ + K F+A +
Sbjct: 541 SEEAYRIALTAFSRLGDFRRVDNLFKAYVNHYGNPKSLYFVNPLIHVNAAVGKVFQARKR 600
Query: 129 FEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
E L + + P+ S+++L+ AH +RD+ AL + EM++ G P TL +
Sbjct: 601 LESLPNQFSLSPDITSWNILLTAHAKSRDKPGALKTLQEMMDRGLKPDSHTLGILMGLFA 660
Query: 188 REMDEESNDRVEALAKKFDIRMN 210
++ E+ A+++++R++
Sbjct: 661 KDESVETVTYFLQFARRYNVRLH 683
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
KS+ +N +I A + + +A + E++ + F L+PDI S+N L+ A K + A +
Sbjct: 576 KSLYFVNPLIHVNAAVGKVFQARKRLESLPNQFSLSPDITSWNILLTAHAKSRDKPGALK 635
Query: 128 VFEHLVSLGVKPNAMSYSLLV 148
+ ++ G+KP++ + +L+
Sbjct: 636 TLQEMMDRGLKPDSHTLGILM 656
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 47/78 (60%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ P++ +YN+L++ + + EA ++F+ +++ G KP+ SYS+L++ + +
Sbjct: 328 TEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRI 387
Query: 158 KAALSVIDEMVNAGFAPS 175
A + +EM++ G P+
Sbjct: 388 DEAKQLFNEMIHQGLTPN 405
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY+ LI + +K+ EA ++F ++ G+ PN +SY+ L+ A + A
Sbjct: 366 GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREA 425
Query: 161 LSVIDEMVNAGFAP 174
+ +M G+ P
Sbjct: 426 RELFKDMHTNGYLP 439
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ Y +I K EA F + G PN SY++++ L ++D+ A
Sbjct: 506 GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRA 565
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +I EM + GF + T
Sbjct: 566 VQLIGEMRDKGFVADEGT 583
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+++Y +I K+ +T A+ + + + +G +P+ ++YS L+D+ +R A
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250
Query: 161 LSVIDEMVNAGFAPS 175
L + M G +P+
Sbjct: 251 LDIFSYMKAKGISPT 265
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S + PDI +++ LI F K EA V + + +GV+PN ++Y+ L+ + +
Sbjct: 293 TSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEV 352
Query: 158 KAALSVIDEMVNAGFAP 174
A + D M+ G P
Sbjct: 353 VEARKLFDVMITRGCKP 369
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +D A Q F + GLTP+ SY LI+AF +L K EA +F+ + +
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQ-GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435
Query: 136 GVKPNAMSYSLLVDA 150
G P+ +YS+L++
Sbjct: 436 GYLPDLCTYSVLLEG 450
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P + SY +LI + EAS + + SL + P+ +++SLL+D + A
Sbjct: 261 GISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEA 320
Query: 161 LSVIDEMVNAGFAPS 175
V+ M G P+
Sbjct: 321 QGVLKTMTEMGVEPN 335
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y+ LI + K + EA +F ++ + G+ P +SY+ L+ + K A
Sbjct: 226 GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEA 285
Query: 161 LSVIDEMVNAGFAP 174
++++EM + P
Sbjct: 286 SAMLNEMTSLNIMP 299
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y+ L+ F K +A R+F + +KPN + Y++L+D+ + + A
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495
Query: 161 LSVIDEMVNAGFAP 174
+ E+ G P
Sbjct: 496 RKLFSELFVHGLQP 509
>gi|326492636|dbj|BAJ90174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 631
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ PDI +Y+ + AF L + S+VF+ +V G++P+ YS+L H+ +
Sbjct: 351 FGIKPDIVTYSHQLNAFSSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGK 410
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILF 219
A +++ M G P+ T V D ++ RV + +R N + +++
Sbjct: 411 AEELLERMCRLGVRPNVVTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLIW 470
Query: 220 N 220
Sbjct: 471 G 471
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V VI G ++ D+D A + + + + G+ P++ ++ LI+ + + K+ ++A V
Sbjct: 426 NVVTFTTVISGWCSVADMDNATRVYRKMRDA-GVRPNLRTFETLIWGYSEQKQPWKAEEV 484
Query: 129 FEHLVSLGVKPNAMSYSLLVDA 150
+ + G++P +YSL+ DA
Sbjct: 485 LQMMQEAGIRPKQSTYSLVADA 506
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 30/211 (14%)
Query: 5 QRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAE 64
QRAF + + + + IF F +L V R G T S ++++ SR
Sbjct: 112 QRAFEAIPSLLAGMDAAGLRPDAIF--FNALINSFVEAGRMGEAT--STFWKM---SRHH 164
Query: 65 PPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGS----------SFGLTPDIHSYNALI 113
P + +++ N +I G D + + F+ + + + P++ +YN L+
Sbjct: 165 PGCRPTISTFNTLIKGFGIAGRPDESQRIFDMMAGGDGDGDRDRVASTVRPNLTTYNILV 224
Query: 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
A+ ++ EA V + + GV+P+ ++Y+ + A+ N + A ++ EMV A
Sbjct: 225 KAWCDHRRLEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEMVRARLR 284
Query: 174 PSKETLKKV------------RRRCVREMDE 192
S+ T + RCVR+M +
Sbjct: 285 TSERTWGIIVGGYCREGRLEEALRCVRQMKD 315
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ ++ +I + + A+RV+ + GV+PN ++ L+ + +
Sbjct: 421 LGVRPNVVTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLIWGYSEQKQPWK 480
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V+ M AG P + T
Sbjct: 481 AEEVLQMMQEAGIRPKQST 499
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 85 DLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D R + + VG + G+ PD+ +YN + A+ K +T+ A + +V ++ +
Sbjct: 229 DHRRLEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEMVRARLRTSER 288
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ ++V + + AL + +M +AG P+
Sbjct: 289 TWGIIVGGYCREGRLEEALRCVRQMKDAGVLPN 321
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL D +Y ALI+ F K+++ A + ++ G P+ +YS LVD + ++++A
Sbjct: 403 GLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAV 462
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVRE 189
L + DE V G K + +RR C RE
Sbjct: 463 LKLPDEFVRKGLCVDKSLYRALIRRFCKRE 492
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +YN+LI+ F K + EA R+F+ + PN ++Y+ L+D + D A
Sbjct: 265 GIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDLDQA 322
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRR 185
L + +EM G P+ T + R+
Sbjct: 323 LRLREEMEAQGLYPTVVTYNSILRK 347
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + DLD+A + E + + GL P + +YN+++ ++ + +A+++ +
Sbjct: 309 LIDGYCRLNDLDQALRLREEMEAQ-GLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEK 367
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMD 191
++P+ ++ + L++A+ D K+AL V + MV AG + T K + C +REMD
Sbjct: 368 KIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMD 425
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
A+ Y +V N ++ I + A + + S + PD + N LI A+ K+
Sbjct: 331 AQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM-SEKKIEPDNVTCNTLINAYCKIGDM 389
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A +V +V G+K + +Y L+ R+ A ++ M++AGF+PS
Sbjct: 390 KSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPS 442
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D ++ ++ + + G+ +IH YN LI+A K +A + + S V P+ +Y+
Sbjct: 182 DMVWKVYKKM-ARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNT 240
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + ALSV D M G P
Sbjct: 241 LISLYCKKGMHYEALSVQDRMEREGIKP 268
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 104 PDI--HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PDI H ++ L+ + K EA +VFEH++ G +P+ + ++L+++ +R
Sbjct: 126 PDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVW 185
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
V +M G + + C + D E D +
Sbjct: 186 KVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNL 222
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q FE + + G P +H+ L+ + K + T +V++ + +GV+ N Y++L+
Sbjct: 149 AIQVFEHMMVN-GFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLI 207
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEES---NDRVEALAKK 204
A + D + A +++ EM + P T + C + M E+ DR+E K
Sbjct: 208 HACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIK 267
Query: 205 FDI 207
DI
Sbjct: 268 PDI 270
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I C D+++A + S + PD+ +YN LI + K +EA V
Sbjct: 199 NIHVYNVLIHACCKSGDVEKADNLLSEMESK-CVFPDLFTYNTLISLYCKKGMHYEALSV 257
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+ + G+KP+ ++Y+ L+ + A+ + E+ +A
Sbjct: 258 QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA 299
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+H+Y AL+ + EA R+F + G P + SY++L+ L + D
Sbjct: 315 GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTV 374
Query: 161 LSVIDEMVNAGF 172
+ +I EM + GF
Sbjct: 375 VQLIHEMADRGF 386
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +D+ + F + S GL PD++SY+ I + K++K EA +F
Sbjct: 145 VVTCNSLMRGYCSQGKIDKVRKIFHLMVSK-GLKPDVYSYSIFINGYCKVEKIDEAMELF 203
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + GV PNA++Y+ L+ A + A + +M G +P
Sbjct: 204 DEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSP 248
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
+ L R P V +I G I + A + +G G PD+ + N+L+ +
Sbjct: 100 KTLKRGFKP--DVVIFTTLIDGVCRIGKTELAAGLLKEMGL-VGCVPDVVTCNSLMRGYC 156
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K + ++F +VS G+KP+ SYS+ ++ + A+ + DEM + G P+
Sbjct: 157 SQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAV 216
Query: 178 T 178
T
Sbjct: 217 T 217
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PDI +Y+ L+ F K E +F+ + VKP+ + Y+++++ +R K A
Sbjct: 245 GLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDA 304
Query: 161 LSVIDEMVNAGFAPSKET 178
V+ ++ G P T
Sbjct: 305 KEVLSRLIVEGLKPDVHT 322
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I G + +D A + F+ + S G+ P+ +YN LI A + + +A +F + + G
Sbjct: 187 INGYCKVEKIDEAMELFDEM-SHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACG 245
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ P+ ++YS L+D + L + EM
Sbjct: 246 LSPDILAYSTLLDGFCKQGNLDEMLVLFQEM 276
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ Y +I + +K +A V L+ G+KP+ +Y+ LVD AL
Sbjct: 281 VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEAL 340
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
+ +M G P + + + C++ D +
Sbjct: 341 RLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTST 373
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D A+ F + + G+ PD+ SYNAL+ F K + +A +F+ + S G+ P+ ++Y
Sbjct: 415 VDVAHSVFRDMVEN-GVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYK 473
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
L+V + + A V D+M+ GF ++
Sbjct: 474 LIVGGLIRGKKISLACRVWDQMMERGFTLNRH 505
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+DRA+ + G+ D+ SYN +I AF K ++T + +FE + G++P+ ++++
Sbjct: 310 VDRAHLMMVERMQTKGMC-DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFN 368
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+L+DA L ++DEM P
Sbjct: 369 ILIDAFLREGSTHVVKKLLDEMTKMRVLP 397
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + N VI + Y+ FE + G+ PD+ ++N LI AF + T ++
Sbjct: 329 VVSYNTVITAFCKARRTRKGYELFEEMCGK-GIRPDMVTFNILIDAFLREGSTHVVKKLL 387
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + V P+ + Y+ +VD N A SV +MV G P
Sbjct: 388 DEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNP 432
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD Y A++ K K A VF +V GV P+ +SY+ L++ A+ +
Sbjct: 397 PDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHL 456
Query: 164 IDEMVNAGFAPSKETLKKV 182
DEM + G P + T K +
Sbjct: 457 FDEMQSKGLYPDEVTYKLI 475
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PDI ++N + + + A +F + S G P+ +SY++++DA +
Sbjct: 112 SLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFD 171
Query: 159 AALSVIDEMVNAGFAP 174
A V +++ G +P
Sbjct: 172 EAAKVWRRLIDKGLSP 187
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C+ K F+ V+ +L + P YK+ A+ ++G + +D AY+ V G
Sbjct: 165 CNAKRFDEAAKVWRRLID-KGLSPDYKACVAL---VVGLCSGGRVDLAYELVVGVIKG-G 219
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ + YNALI F ++ + +A ++ + G P+ ++Y++L++ A+
Sbjct: 220 VKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAV 279
Query: 162 SVIDEMVNAGFAP 174
+++ M +G P
Sbjct: 280 RLVETMERSGVEP 292
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN++++ F + + EA V ++ GV P+ +Y+ L++ ++ + A
Sbjct: 642 GLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEA 701
Query: 161 LSVIDEMVNAGFAP 174
DEM+ GF+P
Sbjct: 702 FRFHDEMLQRGFSP 715
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C RK D ++ ++ Y + +I G + +L A + F+ +
Sbjct: 446 CKRKMLGEADKLFNEMTERGLFPDSY----TLTILIDGHCKLGNLQNAMELFKKMKEK-R 500
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ D+ +YN L+ FGK+ A ++ +VS + P +S+S+LV+A + A
Sbjct: 501 IKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAF 560
Query: 162 SVIDEMVNAGFAPS 175
V DEM++ P+
Sbjct: 561 RVWDEMISKSIKPT 574
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +YN LI A+ EA + + S G P +Y+ +++ + + A
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERA 314
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
V EM+ +G +P T + + ++ D
Sbjct: 315 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 345
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ +YN +++ K K EA ++F + G+ P++ + ++L+D H + + A
Sbjct: 430 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNA 489
Query: 161 LSVIDEM 167
+ + +M
Sbjct: 490 MELFKKM 496
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + D+D A + + + S + P S++ L+ A EA RV+
Sbjct: 505 VVTYNTLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISFSILVNALCSKGHLSEAFRVW 563
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++S +KP M + ++ + + + +++M++ GF P
Sbjct: 564 DEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVP 608
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 25 MEEI----FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVI 77
MEE+ FSP Y +V C K F+T VY L+ + R PP I
Sbjct: 1613 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT---VYALLDEMRKRRCPPNVVTYTILMHA 1669
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
LG A A TF+ + G+ PD YN+LIY G+ + +A V E + + G+
Sbjct: 1670 LGKAG--RTREALDTFDKLKED-GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 1726
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
PN +++ L+ A + + AL ++ +M P +T + + C +
Sbjct: 1727 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1777
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K A+N ++ + RA F+ + + + PD +S+N L++ + K + EA
Sbjct: 1554 KDTKAMNVLLDTLCKERSVKRARGVFQELRGT--IPPDENSFNTLVHGWCKARMLKEALD 1611
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
E + G P+ ++Y+ LV+A+ +D + +++DEM
Sbjct: 1612 TMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1651
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ D + N L+ K + A VF+ L + P+ S++ LV R K
Sbjct: 1550 FGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARMLKE 1608
Query: 160 ALSVIDEMVNAGFAPS 175
AL ++EM GF+PS
Sbjct: 1609 ALDTMEEMKQHGFSPS 1624
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI +Y L+ K + + H+ + P+ +Y+LLV N +
Sbjct: 1763 PDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLF 1822
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI-RMNTENRKNI 217
++EMV+ GFAP +ET V M++ ++++ KK + R N K++
Sbjct: 1823 LEEMVSKGFAPKQETFDLV-------MEKLEKRNLQSVYKKIQVLRTQVTNLKHM 1870
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 37 PLVVACSR--KGFETLDSVYFQLE---NLSRAEPPYKSVAAINC---------VILGCAN 82
P VV C+ KG ++ LE N+ PY INC +I G
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPY----GINCKPNAISYSIIIDGLCK 495
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A + F+ + + G+ PD+ SY +LI+ F + K +A +F +V +GV+P+
Sbjct: 496 CGREDEARELFKEM-KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVT 554
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEAL 201
++S+L+D A +++ M+ G P+ T V+ C+ NDR+
Sbjct: 555 TFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM-------NDRISEA 607
Query: 202 AKKF 205
+ F
Sbjct: 608 TQLF 611
Score = 43.5 bits (101), Expect = 0.073, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + + G+ P++ SY +LI+ F + K +A +F +V GV+ NA++YS+
Sbjct: 681 DEARELFKEM-KALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSV 739
Query: 147 LV 148
++
Sbjct: 740 MI 741
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G++F PD+ SY+ +I K + EA +F+ + +LGV PN +SY+ L+ +
Sbjct: 657 GTNF--KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGK 714
Query: 157 QKAALSVIDEMVNAG 171
+ A + +EMV+ G
Sbjct: 715 LEDAKHLFNEMVDQG 729
Score = 39.7 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + + G+ PD+ SY +LI+ F + K +A +F ++ +G++ + + S+
Sbjct: 138 DEARELFKEMKAQ-GMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSM 196
Query: 147 LVD 149
L+D
Sbjct: 197 LID 199
Score = 39.7 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + + G+ PD+ SY LI+ F K +A +F ++ +G++P+ + S+
Sbjct: 319 DEARELFKEMKAQ-GIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 377
Query: 147 LVD 149
L+D
Sbjct: 378 LID 380
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + SY+ +I K ++ EA +F+ + + G+ P+ +SY+ L+ + + A +
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359
Query: 164 IDEMVNAGFAPSKET 178
+EM++ G P T
Sbjct: 360 FNEMLDVGIQPDVTT 374
Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +++ LI K K EA+ + E ++ G PN ++Y+ LV N A
Sbjct: 548 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607
Query: 161 LSVIDEMVNAGFAP 174
+ +M G P
Sbjct: 608 TQLFMKMQKLGCLP 621
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G DI +Y+ LI + EA+R+F + LG +P+A++Y L+ + A
Sbjct: 221 GCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTA 280
Query: 161 LSVIDEMVN 169
L + EM+N
Sbjct: 281 LQLHQEMLN 289
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 37 PLVVACSR--KGFETLDSVYFQLE---NLSRAEPPYKSVAAINC---------VILGCAN 82
P VV C+ KG ++ LE N+ PY INC +I G
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPY----GINCKPNAISYSIIIDGLCK 651
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D A + F+ + + G+ PD+ SY +LI+ F + K +A +F +V +GV+P+
Sbjct: 652 CGREDEARELFKEM-KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVT 710
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEAL 201
++S+L+D A +++ M+ G P+ T V+ C+ NDR+
Sbjct: 711 TFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCM-------NDRISEA 763
Query: 202 AKKF 205
+ F
Sbjct: 764 TQLF 767
Score = 43.5 bits (101), Expect = 0.073, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + + G+ P++ SY +LI+ F + K +A +F +V GV+ NA++YS+
Sbjct: 837 DEARELFKEM-KALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSV 895
Query: 147 LV 148
++
Sbjct: 896 MI 897
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
G++F PD+ SY+ +I K + EA +F+ + +LGV PN +SY+ L+ +
Sbjct: 813 GTNF--KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGK 870
Query: 157 QKAALSVIDEMVNAG 171
+ A + +EMV+ G
Sbjct: 871 LEDAKHLFNEMVDQG 885
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + FE + + G+ PD+ SY LI+ F K +A +F ++ +G++P+ + S+
Sbjct: 475 DEARELFEEMKAQ-GIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 533
Query: 147 LVD 149
L+D
Sbjct: 534 LID 536
Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + SY+ +I K ++ EA +FE + + G+ P+ +SY+ L+ + + A +
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515
Query: 164 IDEMVNAGFAPSKET 178
+EM++ G P T
Sbjct: 516 FNEMLDVGIQPDVTT 530
Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + + G+ PD+ SY +LI+ F K +A +F ++ +G++P+ + +
Sbjct: 182 DEARELFKEMKAQ-GMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAG 171
L+D A +++ MV+ G
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRG 265
Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +++ LI K K EA+ + E ++ G PN ++Y+ LV N A
Sbjct: 704 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763
Query: 161 LSVIDEMVNAGFAP 174
+ +M G P
Sbjct: 764 TQLFMKMQKLGCLP 777
Score = 37.4 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + SY+ +I K ++ EA +F+ + + G+ P+ +SY+ L+ + + A +
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222
Query: 164 IDEMVNAGFAPSKET 178
+EM++ G P T
Sbjct: 223 FNEMLDVGIQPDVTT 237
>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
Length = 645
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
AA N +I I +L+ A T + + G+ P++ SY++LI K K A ++
Sbjct: 397 AAYNALIDEYCRIGNLEEALATCTRM-TEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYT 455
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+V+ G++PN ++Y+ L+ H N AA + EM+ G +P+ T+ + RE
Sbjct: 456 EMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRE 514
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + +YNALI + ++ EA + +G++PN +SYS L+D H + A
Sbjct: 391 GVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIA 450
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ EMV G P+ T
Sbjct: 451 MAIYTEMVAKGIEPNVVT 468
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 30 SPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
+P +L LV+A S+ G LD + L R P ++ A N V+ G A
Sbjct: 117 TPAPALGVLVIALSQMGL--LDEALYVFRRL-RTLP---ALPACNAVLDGLVKARRPGCA 170
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
++ F+ + GL P + +YN LI A +A V++ +V+ + PN ++Y+ ++
Sbjct: 171 WELFDEMLRR-GLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMIC 229
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A A + D M AG P++ T
Sbjct: 230 ALCEEGCIGDAERLFDAMKEAGMQPNQYT 258
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P SV N +I C + +A + ++ + + + P++ +Y +I A
Sbjct: 176 EMLRRGLVP--SVVTYNTLINACRFQGTVAKAQEVWDQMVAQ-QIDPNVVTYTTMICALC 232
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ +A R+F+ + G++PN +Y++L+ H D +A+ + E++ +G P+
Sbjct: 233 EEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPN 290
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-TNRDQKA 159
G+ P++ +Y ALI+ K A R+ + ++ G+ PNA++ S+LVD NR Q+A
Sbjct: 461 GIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEA 520
Query: 160 ALSVID 165
V++
Sbjct: 521 VRFVME 526
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138
GC I D +R + + G + P+ ++YN L+ + A +++ L+ G+
Sbjct: 235 GC--IGDAERLFDAMKEAG----MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLN 288
Query: 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
PNA+ ++ L+D + A + EM G AP+
Sbjct: 289 PNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPT 325
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ S+N ++ A K K EA V + ++ GV+PN ++Y+ L+D H + A+
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326
Query: 162 SVIDEMVNAGFAPS 175
V D MV G P+
Sbjct: 327 KVFDTMVCKGCMPN 340
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG---SSFGLT 103
F T+D + R +PP S N ++ A + + + T ++ SFG+
Sbjct: 39 FNTIDGAISSFNRMLRMQPP-PSTVDFNKLLTSIAKM----KHHSTLLSLSHQMDSFGIP 93
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+I++ + LI +F L + A V ++ LG +P+ +++ L+ AL +
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHL 153
Query: 164 IDEMVNAGFAP 174
D+M+ GF P
Sbjct: 154 FDKMIGEGFRP 164
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y LI K+ T A R+ +V +PN +Y+ ++D+ +R A
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220
Query: 161 LSVIDEMVNAGFAP 174
++ EMV G +P
Sbjct: 221 FNLFSEMVTKGISP 234
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +YN+LI+A L + + + +V + P+ +S++ +VDA A
Sbjct: 231 GISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEA 290
Query: 161 LSVIDEMVNAGFAPSKETLKKVR-RRC-VREMDE 192
V+D+M+ G P+ T + C + EMDE
Sbjct: 291 HDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDE 324
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +L+ A F + SS GL PD+ +Y+ +I + EAS++F +
Sbjct: 504 NIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMD 562
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
G N Y+ + L N + A+ ++ EMV GF+ T+
Sbjct: 563 ENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 608
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YN +I + K ++ EA +F +V+ G+ P+ +Y+ L+ A + K ++
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMD-EESNDRVEALAKK 204
++EMV++ P + V +E E++D V+ + ++
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT-------------------FEA 125
++D A + F+ + G P++ SYN LI + K+++ EA
Sbjct: 321 EMDEAVKVFDTMVCK-GCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEA 379
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+VF+ +V G PN +SY+ L++ + + A+ + EM P T
Sbjct: 380 VKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVT 432
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
+ TL + Y +++ + +A Y + C L ++D A + F+ + G P++
Sbjct: 344 YNTLINGYCKIQRIDKA-IHYTXLMDXXCCYL------NMDEAVKVFDTMVCK-GCMPNV 395
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SYN LI + K+++ +A +F + + P+ ++YS L+ + A+++ E
Sbjct: 396 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHE 455
Query: 167 MVNAGFAPSKETLK 180
MV P+ T +
Sbjct: 456 MVACSQIPNLVTYR 469
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G I +D+A F + L PD +Y+ LI+ +++ +A +
Sbjct: 394 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQ-ELIPDTVTYSTLIHGLCHVERLQDAIAL 452
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F +V+ PN ++Y +L+D NR A++++ + + P
Sbjct: 453 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDP 498
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-TNRDQKA 159
G+ P++ +Y AL+ L + EA +VF+ +V G PN +SY+ L++ + R KA
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360
Query: 160 ------------------ALSVIDEMVNAGFAPS 175
A+ V D MV G P+
Sbjct: 361 IHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPN 394
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 31 PFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P T +Y +V C R ++++ SR P V +I G I D+
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMH--SRDITP--DVLTYTAIISGFCQIGDMVE 827
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + F + GL PDI ++ L+ + K +A RV H++ G PN ++Y+ L+
Sbjct: 828 AGKLFHEMLCR-GLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLI 886
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D D +A ++ EM G P+
Sbjct: 887 DGLCKEGDLDSANELLHEMWKIGLQPN 913
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 65/134 (48%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
RA F S +TPD+ +Y A+I F ++ EA ++F ++ G++P+ ++++ L
Sbjct: 791 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTEL 850
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207
++ + K A V + M+ AG +P+ T + +E D +S + + K +
Sbjct: 851 MNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 910
Query: 208 RMNTENRKNILFNL 221
+ N +I+ L
Sbjct: 911 QPNIFTYNSIVNGL 924
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 85 DLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++D+A + E +G GL P I ++N L+ F + ++ +++ G+ PNA +
Sbjct: 964 EMDKAQEILTEMLGK--GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1021
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEESNDRVEAL 201
++ LV + + KAA ++ +M + G P +T + V+ C R M E E
Sbjct: 1022 FNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMK 1081
Query: 202 AKKFDIRMNT 211
K F + ++T
Sbjct: 1082 GKGFSVSVST 1091
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G DLD A + + GL P+I +YN+++ K EA ++
Sbjct: 878 NVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNSIVNGLCKSGNIEEAVKL 936
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CV 187
+ G+ + ++Y+ L+DA+ + + A ++ EM+ G P+ T + C+
Sbjct: 937 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCL 996
Query: 188 REMDEESNDRVEALAKK 204
M E+ + + K
Sbjct: 997 HGMLEDGEKLLNWMLAK 1013
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD+ SY+ +I + + + + ++ E + G+KPN+ +Y ++ A
Sbjct: 699 GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEA 758
Query: 161 LSVIDEMVNAGFAP 174
EM+ G P
Sbjct: 759 EEAFSEMIGQGILP 772
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I C+ +L+ A FE + +S PD+ +YNA++ G+ K EA R+F
Sbjct: 293 VITYNTLISACSQSSNLEDAVTVFEDMIAS-ECRPDLWTYNAMVSVHGRCGKAEEAERLF 351
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV G P+A++Y+ L+ A + +++V AGF ++ T
Sbjct: 352 RELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEIT 400
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+E+ F P Y L+ A +++G +D V E L +A K+ N +I +
Sbjct: 355 VEKGFMPDAITYNSLLYAFAKEG--NVDKVEHTCEQLVKAGFK-KNEITYNTMIHMYGKM 411
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD A ++ + + G TPD +Y +I + GK+ + EA +V E + G+KP ++
Sbjct: 412 GRLDLAVGLYDEM-RAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIA 470
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+S L+ A+ + A + D M+ +G P +
Sbjct: 471 FSALICAYAKGGRRADAENTFDCMIASGVKPDR 503
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +++ALI A+ K + +A F+ +++ GVKP+ ++Y +++D + D +
Sbjct: 463 GLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522
Query: 161 LSVIDEMVNAGFAP 174
L + +M+N + P
Sbjct: 523 LCLYRKMMNDNYRP 536
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 288 GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEA 347
Query: 161 LSVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ E+V GF P T + + V +++ V+A KK +I NT
Sbjct: 348 ERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNT 403
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K + E LV G K N ++Y+ ++ + A
Sbjct: 358 GFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLA 417
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + DEM G P T
Sbjct: 418 VGLYDEMRAMGCTPDAVT 435
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 38 LVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ A S+KG + D ++ E + R P + N +I + ++DRA++ +
Sbjct: 255 LIYALSKKGQVQETDKLFD--EAVRRGIRP--DLVLYNALINSHSTSGNIDRAFEIMGEM 310
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ PD +YN L+ L + EA ++ + + G++P+ ++Y+ L+ + D
Sbjct: 311 EKKR-IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 369
Query: 157 QKAALSVIDEMVNAGFAPS 175
K AL + +EM+N GF P+
Sbjct: 370 VKDALRIRNEMMNKGFNPT 388
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ +A + FE + S G+ + +Y +LIYA K + E ++F+ V
Sbjct: 218 NILINGHCKEGNVKKALEIFENM-SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 276
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR-CVREMDE 192
G++P+ + Y+ L+++H T+ + A ++ EM AP T + R C+ +
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336
Query: 193 ESNDRVEALAKK 204
E+ ++ + K+
Sbjct: 337 EARKLIDEMTKR 348
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N VI G + + A + G+ P+ ++Y +I + K+ + EA
Sbjct: 68 PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 127
Query: 126 SRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+VF+ +++ G VKP A+ Y+ L+ + AL D MV G A + T
Sbjct: 128 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + +D A + + + + G+ PD+ +YN LI + +A R+ ++
Sbjct: 323 NTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 381
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G P ++Y+ L+ N A +++ EMV G P T
Sbjct: 382 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDST 426
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Query: 25 MEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+ ++ P Y V+A CSR + + ++ P + VI G
Sbjct: 64 LRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGT---VISGWCK 120
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
+ +D A + F+ + + + P+ YNALI + K A + +V GV
Sbjct: 121 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 180
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y+LLV A + A +++EM G AP
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAP 212
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ AC + G + S +S + P ++ N +I G A D+ A + + +
Sbjct: 659 LLKACCKSG--RMQSALAVTREMSSQKIP-RNTFVYNILIDGWARRGDVWEAAELMQQMK 715
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G+ PDIH+Y + I A K A++ + + +GVKPN +Y+ L+
Sbjct: 716 QE-GVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLP 774
Query: 158 KAALSVIDEMVNAGFAPSK 176
+ AL EM +AG P K
Sbjct: 775 EKALKCFQEMKSAGLKPDK 793
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C D+ RA +T + + G+ P+I +Y LI+ + + +A + F+ + S G
Sbjct: 730 INACCKAGDMQRATKTIQEM-EVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAG 788
Query: 137 VKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ + + EM+ T +C+R++
Sbjct: 789 LKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICREMIECELTVDMGTAVHW-SKCLRKI 847
Query: 191 DEESNDRVEALAKKFDIRMNTEN 213
+ + EAL K F N+ N
Sbjct: 848 ERTGGELTEALQKTFPPDWNSYN 870
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + SY LI + GK+ K E S++ E G+K N +YS+L++ + +D
Sbjct: 438 GFTPSVISYGCLINLYIKIGKVSKALEVSKMME---VAGIKHNMKTYSMLINGFVRLKDW 494
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRR---------RCVREMDEESNDRVEALAKKF 205
A +V +++V G P + R R +R + E +R + F
Sbjct: 495 ANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTF 551
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 15/191 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACS-RKGFETLDSVYFQLENL 60
GD++RA L F+ I F+ + LV C K E LD + L +
Sbjct: 562 GDMRRA---LEIFDMMRWSGCIPTVHTFNAL--ILGLVEKCQMEKAVEILDEM--SLAGI 614
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S E Y ++ + G A++ D +A++ F + + GL D+++Y AL+ A K
Sbjct: 615 SPNEHTYTTI------MHGYASLGDTGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSG 667
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ A V + S + N Y++L+D D A ++ +M G P T
Sbjct: 668 RMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 727
Query: 181 KVRRRCVREMD 191
C + D
Sbjct: 728 SFINACCKAGD 738
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE V GL PD+ YN +I AF + A R + +
Sbjct: 484 LINGFVRLKDWANAFAVFEDVVKD-GLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKE 542
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ ++ + D + AL + D M +G P+ T
Sbjct: 543 RHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTF 586
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + C+I I + +A + + + + G+ ++ +Y+ LI F +LK A V
Sbjct: 442 SVISYGCLINLYIKIGKVSKALEVSKMMEVA-GIKHNMKTYSMLINGFVRLKDWANAFAV 500
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T + R
Sbjct: 501 FEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFAR 560
Query: 189 EMD 191
D
Sbjct: 561 SGD 563
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
L+ + ++AV +F P + ++ + + A FE + + G++P +
Sbjct: 246 LETEPENWQAVVQAFERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHV 305
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
Y+ L+ A+ RD + ALS + +M G S T + + D E+ D AK
Sbjct: 306 YTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAK 365
Query: 204 KFDIRMNTENRKNILF 219
+ +N NI++
Sbjct: 366 ERHTTLNAIIYGNIIY 381
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 400 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 458
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ YS+++ R AA + EM+ +G S T V C
Sbjct: 459 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 518
Query: 188 REMDEESNDRVE---ALAKKFDIRMNTENRKNILFNLEYSASY 227
+E+N +E A+ KFDI I FN+ SA +
Sbjct: 519 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISAMF 552
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++D+A + + S G+ PD+ +Y+ +I K K +A RV E +V
Sbjct: 87 NSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 145
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN+++Y+ L+ + + ++ V +M + G P+
Sbjct: 146 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 187
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G+ P + + N+ I+A K +T EA +F+ +V G KP+ +SYS ++ + T D
Sbjct: 180 SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDS 239
Query: 158 KAA--LSVIDEMVNAGFAPSKET 178
A ++ + M+ G AP+K
Sbjct: 240 CLADVHNIFNLMLTKGIAPNKHV 262
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D+A+ F + G+ P I N++I K+K+ +A + + +V
Sbjct: 54 LIYGFVKDGEVDKAHCLFLEMMEQ-GVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 112
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +YSL++D ++ A V+++MV AG P+ T
Sbjct: 113 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSIT 155
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 327 PP--SEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 384
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 385 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 435
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P K V N +I A +D+A FE + + G+ PD ++ +I + ++
Sbjct: 252 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRI 308
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +A F H+V +GV P+ Y L+ + + A +I EM+N P
Sbjct: 309 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 363
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 396 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 455
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 456 LTVFRDMLHKGVKPT 470
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G PDI SY+ +++ + + + +F +++ G+ PN +++L++A+
Sbjct: 218 GPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMD 277
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + ++M N G P T V
Sbjct: 278 KAMLIFEDMQNKGMIPDTVTFATV 301
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD SY +LIY F K + +A +F ++ GV P + + ++ ++ A
Sbjct: 44 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 102
Query: 161 LSVIDEMVNAGFAP 174
S++ +MV++G AP
Sbjct: 103 ESIVQKMVDSGIAP 116
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
LTPD +YN LI F K A VF H++ + P+ +Y+ ++D + NR AL
Sbjct: 255 LTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKAL 314
Query: 162 SVIDEMVNAGFAPSKET 178
SV+ EM G PS+ T
Sbjct: 315 SVLSEMEITGVMPSELT 331
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++LG LD A E + + L PDIH+Y L+ F + K A + + ++
Sbjct: 578 NALLLGICKYGTLDEALDICEKMVKNNCL-PDIHTYTILLSGFCRKGKILPALVMLQMML 636
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
GV P+ ++Y+ L++ + KAA V E++
Sbjct: 637 EKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEII 671
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 75 CVIL--GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
C IL G + ++ +A Q +++ G+ PD+ +Y+ALI ++ K E + +
Sbjct: 367 CTILIDGFCQVGEISKAKQILKSMLED-GIDPDVVTYSALINGMCRMAKMHETKEILSRM 425
Query: 133 VSLGVKPNAMSYSLLV 148
G+ PN + Y+ L+
Sbjct: 426 QKSGILPNDVLYTTLI 441
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+ILG + +D A + E + G+ PD ++ LI +F + K A R+F + L
Sbjct: 756 LILGLSECGLIDIAVKFLEKMVLE-GIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCL 814
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ P++ ++S +++ + + V+ EM+ G P+
Sbjct: 815 HLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPN 854
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P IH NAL+ AF + EA +++ + + N++S++ ++D++ A SV
Sbjct: 469 PVIH--NALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSV 526
Query: 164 IDEMVNAGFAPSKETLKKVRR 184
D+MV G +P+ T + + R
Sbjct: 527 YDDMVRYGHSPNVCTYQNLLR 547
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C++ G N + A F+ + GL D +YN+L+ + K R+
Sbjct: 645 VAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMS 704
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ V PN+ SY++L+ ++ +L + MV G P T +
Sbjct: 705 DMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYR 754
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L D+ SYN LI K K +A ++ + S G+ PN +Y L A + +
Sbjct: 956 LKVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGE 1015
Query: 162 SVIDEMVNAGFAPSKETLKKVRRR 185
+++++ G P+ + L+ + RR
Sbjct: 1016 ELLEDIEERGLIPAFKQLENLERR 1039
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN ++ F + + EA + ++ G+ P+ +Y+ L++ +++ + K A
Sbjct: 600 GLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659
Query: 161 LSVIDEMVNAGFAPSKE 177
DEM+ GF P +
Sbjct: 660 FRFHDEMLQRGFVPDDD 676
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 22 IIDMEE--IFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79
+IDME+ IF+ + L+ A R+G L F++ N + ++ N VI G
Sbjct: 208 LIDMEQKGIFADIVTYNTLINAYCREG---LLGEAFEVMNSMSGKGLKPTLFTYNAVING 264
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
RA F + S GL+PD +YN L+ + EA +F ++ GV P
Sbjct: 265 LCKKGRYVRAKGVFNEM-LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +S+S L+ N AL +M +G P
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVP 358
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PDI +YN LI F K + +A+ ++ ++S + PN +SY++LV+ + A
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAF 520
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196
+ DEM+ G P+ T V + R D D
Sbjct: 521 RLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N VI G DL +A + F S G+ PD +YN LI F K + +A +
Sbjct: 534 TLVTCNTVIKGYCRSGDLSKADE-FLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFL 592
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G++P+ ++Y+++++ + A ++ +M+ G P + T
Sbjct: 593 INKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRST 642
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ DI +YN LI A+ + EA V + G+KP +Y+ +++ A
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274
Query: 161 LSVIDEMVNAGFAPSKET 178
V +EM++ G +P T
Sbjct: 275 KGVFNEMLSIGLSPDTTT 292
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD ++ LI+ K +A +F + +KP+ ++Y++L+D + + A
Sbjct: 425 GVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKA 484
Query: 161 LSVIDEMVNAGFAPS 175
+ +EM++ P+
Sbjct: 485 NELWNEMISRKIFPN 499
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + ++++A F + G+ PDI SY+ +I F K+KK EA +F+ +
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQG-GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ P+ ++YS L+D + AL ++D+M + G P+ T +
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSI 441
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD++++N L+ AF K K E VF+ ++ G+KPN ++Y+ L+D + ++ A
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350
Query: 162 SVIDEMVNAGFAPSKETLK-KVRRRC-VREMDEESN 195
S+ + M G P ++ + C +++ DE N
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMN 386
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P+ +YN+L+ + +K+ +A +F + GV P+ SYS++++ + A
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384
Query: 161 LSVIDEMVNAGFAP 174
+++ EM P
Sbjct: 385 MNLFKEMHRKNIIP 398
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ YN +I + K+K EA +F ++S G+ P+ ++YS L+ A+
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI 280
Query: 162 SVIDEMVNAGFAPSKETL 179
+ ++M+ P T
Sbjct: 281 DLFNKMILENIKPDVYTF 298
>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 683
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY L+ ++G+ ++ +A VF + KPN ++Y+ L+DA+ +N A
Sbjct: 253 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 312
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ + +M G P+ ++ + C R + + D V + A+ I +NT
Sbjct: 313 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 363
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L ++ P N +I + + +A F ++ PD+ ++ ++
Sbjct: 138 YFELMKGAKVRP---DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 194
Query: 113 IYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++ + +K E R VFE +V+ G+KPN +SY+ L+ A+ + ALSV+ ++ G
Sbjct: 195 MHLY-SVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNG 253
Query: 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
P V C+ ++ R AK+ + M E RK
Sbjct: 254 IIPD-----VVSYTCL--LNSYGRSRQPGKAKEVFLMMRKERRK 290
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +A +F + KP+A +Y L++AH + A++++D+M+
Sbjct: 14 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 73
Query: 169 NAGFAPSKETLKKVRRRC 186
A APS+ T + C
Sbjct: 74 RAAIAPSRSTYNNLINAC 91
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD +Y+ALI A G+ + A + + ++ + P+ +Y+ L++A ++ + +
Sbjct: 40 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 99
Query: 160 ALSVIDEMVNAGFAP 174
AL V +M + G P
Sbjct: 100 ALEVCKKMTDNGVGP 114
>gi|307104938|gb|EFN53189.1| hypothetical protein CHLNCDRAFT_25863, partial [Chlorella
variabilis]
Length = 166
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI A + +A+ VF+ ++ GV+P+A+++S+LV A+ +
Sbjct: 32 GCRPNVVTYNGLIGACAQAGMWAKAAEVFDSMIGGGVRPDAVTFSVLVAAYERGGQWRRC 91
Query: 161 LSVIDEMVNAGFAP 174
L ++M GF P
Sbjct: 92 LQAFEQMQQQGFRP 105
>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 475
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 29 FSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
+ PF Y ++ K ++ ++ VY Q+ L P V N ++ + +
Sbjct: 217 YRPFKHSYNAILNSLLGVKQYKLIEWVYEQM--LEDGFSP--DVLTYNILLWTNYRLGKM 272
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR + F+ + GL+PD ++YN L++ GK K A H+ +G+ + + Y+
Sbjct: 273 DRFDRLFDEMARD-GLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTT 331
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D + +A +DEMV AG P
Sbjct: 332 LIDGLSRAGNLEACKYFLDEMVKAGCRP 359
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK- 118
L R P SVA +I C +++ A F+ + + GL PD+ SYN L+ +GK
Sbjct: 385 LKRGIRP--SVATYTLLIDSCCKPGNMEMAEYLFQRMITE-GLVPDVVSYNTLMNGYGKK 441
Query: 119 --LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
L+K FE + + S GV P+ ++Y++L+ + A ++DE+ GF+P
Sbjct: 442 GHLQKAFE---LLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDV 498
Query: 177 ETLKKV 182
T +
Sbjct: 499 VTFTNI 504
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
F L+P+I +N+ I +A++VF+ + +G+ P+ SY+ ++ + +D
Sbjct: 317 FNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISN 376
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
AL + +M+ G PS T + C + + E
Sbjct: 377 ALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNME 410
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + F+ + GL PD SY ++ + K+K A + ++ G++P+ +Y+LL
Sbjct: 341 KAAKVFQDM-CEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLL 399
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+D+ + + A + M+ G P
Sbjct: 400 IDSCCKPGNMEMAEYLFQRMITEGLVP 426
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G +N + + A+ F + S L PD+ + +AL+ + + + EA+ +F ++
Sbjct: 504 IIGGFSNKGNFEEAFLLFFYM-SEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDA 562
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV----RRRCVREMD 191
G+K + + Y+ L+ + + A ++ M+ G P+ T + ++CV
Sbjct: 563 GLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVENPV 622
Query: 192 EESNDRVEALAKKFDIR 208
E + +++ L K+ I+
Sbjct: 623 ERAAFKLQQLLLKYGIQ 639
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 31 PFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
P + Y L++ +C + G + FQ ++ P V + N ++ G L +A
Sbjct: 391 PSVATYTLLIDSCCKPGNMEMAEYLFQ-RMITEGLVP--DVVSYNTLMNGYGKKGHLQKA 447
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
++ + S+ G++PD+ +YN LI+ K EA + + L G P+ ++++ ++
Sbjct: 448 FELLSMMRSA-GVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIG 506
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-----RRRCVRE 189
+ + A + M P T + R RC+ E
Sbjct: 507 GFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAE 551
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + +Y LI + K A +F+ +++ G+ P+ +SY+ L++ + + A
Sbjct: 388 GIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKA 447
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCV-REMDEESNDRVEALAKK 204
++ M +AG +P T + + R + E+ D ++ L ++
Sbjct: 448 FELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRR 492
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 34 SLYP---LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
++YP L+ + G + YF E + + P +V +I G N + +A+
Sbjct: 261 TVYPYNSLINGYCKLGNASAAKYYFD-EMIDKGLTP--TVVTYTSLISGYCNEGEWHKAF 317
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ + + ++ G++P+ +++ A+I + EA R+F + + P+ ++Y+++++
Sbjct: 318 KVYNEM-TAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEG 376
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
H + + A ++DEMV GF P T +
Sbjct: 377 HCRSGNISEAFHLLDEMVGKGFVPDTYTYR 406
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ + N +I G + ++ A + + + + PD +Y+ +IY K EA ++
Sbjct: 610 TTVSYNILIRGFCRLGKIEEATKLLHGMTDN-DILPDYITYSTIIYEQCKRSNLQEAIKL 668
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ ++ G+KP+ ++YS LV + + A + DEM+ G + T K
Sbjct: 669 WHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVTPK 720
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 109 YNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
Y+AL++ + G+ K A RV +V GV + + Y++L+D D +A ++
Sbjct: 440 YSALVHGYCKEGRFKDAVSACRV---MVERGVAMDLVCYAILIDGTAREHDTRALFGLLK 496
Query: 166 EMVNAGFAP 174
EM N G P
Sbjct: 497 EMHNHGLRP 505
>gi|218184371|gb|EEC66798.1| hypothetical protein OsI_33201 [Oryza sativa Indica Group]
Length = 520
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNALIYAFGKLKKTFEASRVF 129
A V+ A+ D+D A + +E + + G P + SY A + + EA VF
Sbjct: 137 ATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFDAGRPAEAREVF 196
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ +V+ G++P+ +Y++L++ HL N + +A + ++D+M AG P K + ++C R
Sbjct: 197 QEMVAEGLRPSCKTYTVLIE-HLANVGKFEATMEIMDKMQEAGVEPDKALCNILVQKCSR 255
Query: 189 EMDEESNDRV 198
+ R+
Sbjct: 256 ACETSVMTRI 265
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G + +A+ L E +T + F P Y V+ K + LD Y E +
Sbjct: 601 GKVNKAYQLLEEMKT----------KGFEPTVVTYGSVIDGLAK-IDRLDEAYMLFEE-A 648
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+++ +V + +I G + +D AY E + GLTP+++++N+L+ A K ++
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNLYTWNSLLDALVKAEE 707
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA F+ + L PN ++Y +L++ R A EM G PS
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V VI G A I LD AY FE S + ++ Y++LI FGK+ + EA +
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-RIELNVVIYSSLIDGFGKVGRIDEAYLI 679
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKK 181
E L+ G+ PN +++ L+DA + + AL M P++ T L K
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Query: 182 VRR 184
VR+
Sbjct: 740 VRK 742
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + V C + ++ LE R Y A N +I+G + D AY
Sbjct: 276 YTSM--IGVLCKANRLDEAVEMFEHLEKNRRVPCTY----AYNTMIMGYGSAGKFDEAYS 329
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
E + G P + +YN ++ K+ K EA +VFE + PN +Y++L+D
Sbjct: 330 LLERQRAK-GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDML 387
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDE 192
A + D M AG P+ T+ V R C +++DE
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 24 DMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+M++ +P S Y +++ R G LD+ F+L + + + +V +N ++
Sbjct: 368 EMKKDAAPNLSTYNILIDMLCRAG--KLDTA-FELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
LD A FE + TPD ++ +LI GK+ + +A +V+E ++ + N++
Sbjct: 425 SQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
Y+ L+ + ++ + +M+N +P + L
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+ SL ++ C + F+ LD + ++ +++ P SV ++LGC L Y
Sbjct: 101 YNSLLLVMARC--RNFDALDQILGEM-SVAGFGP---SVNTCIEMVLGCVKANKLREGYD 154
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + F P +Y LI AF + + +F+ + LG +P ++ L+
Sbjct: 155 VVQMM-RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 152 LTNRDQKAALSVIDEM 167
+ALS++DEM
Sbjct: 214 AKEGRVDSALSLLDEM 229
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FS +T+L A + + + +++ Q++ L EP +V +I G A +D
Sbjct: 168 FSAYTTLIGAFSAVNHS--DMMLTLFQQMQELGY-EP---TVHLFTTLIRGFAKEGRVDS 221
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + + SS L DI YN I +FGK+ K A + F + + G+KP+ ++Y+ ++
Sbjct: 222 ALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 25 MEEI----FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL-SRAEPPYKSVAAINCVI 77
MEE+ FSP Y +V C K F+T VY L+ + R PP I
Sbjct: 1572 MEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT---VYALLDEMRKRRCPPNVVTYTILMHA 1628
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
LG A A TF+ + G+ PD YN+LIY G+ + +A V E + + G+
Sbjct: 1629 LGKAG--RTREALDTFDKLKED-GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGI 1685
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
PN +++ L+ A + + AL ++ +M P +T + + C +
Sbjct: 1686 APNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1736
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K A+N ++ + RA F+ + + + PD +S+N L++ + K + EA
Sbjct: 1513 KDTKAMNVLLDTLCKERSVKRARGVFQELRGT--IPPDENSFNTLVHGWCKARMLKEALD 1570
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
E + G P+ ++Y+ LV+A+ +D + +++DEM
Sbjct: 1571 TMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1610
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ D + N L+ K + A VF+ L + P+ S++ LV R K
Sbjct: 1509 FGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARMLKE 1567
Query: 160 ALSVIDEMVNAGFAPS 175
AL ++EM GF+PS
Sbjct: 1568 ALDTMEEMKQHGFSPS 1583
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PDI +Y L+ K + + H+ + P+ +Y+LLV N +
Sbjct: 1722 PDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLF 1781
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI-RMNTENRKNI 217
++EMV+ GFAP +ET V M++ ++++ KK + R N K++
Sbjct: 1782 LEEMVSKGFAPKQETFDLV-------MEKLEKRNLQSVYKKIQVLRTQVTNLKHM 1829
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + F + G PD+ SY L+ F +L K +A R+ + + V+P+ ++Y
Sbjct: 236 DMESAMRVFGEILDK-GWMPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTY 294
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++++A+ R A++++++MV G PS KV
Sbjct: 295 GVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCCKV 332
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G + +YN LI + + EA R+++ +V G PNA +Y++L+ D K A
Sbjct: 390 GEVASLMTYNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEA 449
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V++EMV +G P+K T
Sbjct: 450 IRVLEEMVESGCLPNKST 467
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A+ F++ F L P++ S N L+ A K + A RV + + +G+ PN +SYS ++
Sbjct: 169 AHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLDEMSLMGLVPNVVSYSTVL 228
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAP 174
+ D ++A+ V E+++ G+ P
Sbjct: 229 GGFVFKGDMESAMRVFGEILDKGWMP 254
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G P+ +YN L+ F K+ EA RV E +V G PN ++S+LVD
Sbjct: 425 GRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMVESGCLPNKSTFSILVDG 474
>gi|389741640|gb|EIM82828.1| hypothetical protein STEHIDRAFT_64341 [Stereum hirsutum FP-91666
SS1]
Length = 478
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query: 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA 63
L+ AF L+ + S+I E P ++ R +++D+ + LE L +
Sbjct: 227 LKEAFAILSLMRS---QSLIPTNETIQP-------ILDTIRASPDSVDTAWTALEELEKE 276
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
P + A+N +I DL RA ++ + F + P++ ++NAL
Sbjct: 277 GKPI-DITAVNAIIQAAVAHGDLQRAVGIYQII-PEFKIKPNVDTFNALFSGCIATAHKD 334
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183
++ + VKP+A +Y LV L+ + A ++EM A F P + +
Sbjct: 335 LGEKILGDMKEAKVKPDAQTYERLVVLSLSGETYEEAFFYLEEMKAANFYPPLSVYESIV 394
Query: 184 RRCVREMD 191
RCV D
Sbjct: 395 VRCVDAGD 402
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI SYN +IYA+ + + +ASR+F + G+ P+ ++Y+ + ++ + + A
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEA 753
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V+ M+ G P++ T +
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSI 775
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD ++YN LI + EA++VFE + + G + ++Y+ L+D + + K
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPK 331
Query: 159 AALSVIDEMVNAGFAPS 175
A+ V++EM GF+PS
Sbjct: 332 EAMKVLNEMELNGFSPS 348
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 29 FSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
FSP Y L+ A +R G LD +L+N + V ++ G ++
Sbjct: 345 FSPSIVTYNSLISAYARDGM--LDEA-MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVE 401
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A FE + ++ G P+I ++NA I +G K + ++F+ + G+ P+ ++++ L
Sbjct: 402 SAMNIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTL 460
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ N V EM AGF P +ET
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PDI ++N L+ FG+ E S VF+ + G P +++ L+ A+ + A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200
++V M++AG P T V R E +++V A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP + +YN+L+Y + ++ + +++ G+KP+ +SY+ ++ A+ N + A
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 161 LSVIDEMVNAGFAP 174
+ EM ++G P
Sbjct: 719 SRIFSEMRDSGIVP 732
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 14/186 (7%)
Query: 10 TLNEFETAYG--------DSIIDM--EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
TLN + YG + ++D E F+P + Y ++ + + S E
Sbjct: 631 TLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P + + N VI + A + F + S G+ PD+ +YN I ++
Sbjct: 691 LAKGIKP--DIISYNTVIYAYCRNTRMRDASRIFSEMRDS-GIVPDVITYNTFIGSYAAD 747
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRDQKAALSVIDEMVNAGFAPSKET 178
EA V +++ G +PN +Y+ +VD + NR +A L V D AP E
Sbjct: 748 SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807
Query: 179 LKKVRR 184
L+ + R
Sbjct: 808 LRLLER 813
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF-EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P + +YN ++ FGK+ + + + + E + S G+ P+A +Y+ L+ +
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V +EM AGF+ K T
Sbjct: 298 AAQVFEEMKAAGFSHDKVT 316
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q FE + ++ G + D +YNAL+ +GK + EA +V +
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAA-GFSHDKVTYNALLDVYGKSHRPKEAMKVLNEME 341
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ ++Y+ L+ A+ + A+ + ++M G P
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+ ++L C+ L A + F + G +PDI + N+++ +G+ + +A+ V +++
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVGKANEVLDYM 655
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ +Y+ L+ H + D + ++ E++ G P
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKP 697
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKA 159
G + D++SY +LI AF + EA VF+ + G KP ++Y+++++
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNK 262
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S++++M + G AP T + C R
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 19/192 (9%)
Query: 10 TLNEFETAYGD--SIIDMEEIFSPFT--SLYPLVVACSRKGFETLDSVYFQLENLSRAEP 65
T N F YG+ +DM +IF L P +V + TL +V+ Q S
Sbjct: 421 TFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVT-----WNTLLAVFGQNGMDSEVSG 475
Query: 66 PYKSVA---------AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+K + N +I + ++A + + + G+TPD+ +YN ++ A
Sbjct: 476 VFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDA-GVTPDLSTYNTVLAAL 534
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ ++ +V + KPN ++Y L+ A+ ++ S+ +E+ + P
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRA 594
Query: 177 ETLKKVRRRCVR 188
LK + C +
Sbjct: 595 VLLKTLVLVCSK 606
>gi|168063169|ref|XP_001783546.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664933|gb|EDQ51635.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
LD V +++ + ++A+ N ++ A D A + + + L D+ SY
Sbjct: 59 LDEVQRYYQHMQQGAGITGNLASFNILLKAYAACGRADLAADLYFRIQQTGELNLDVVSY 118
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
NA+I FG+ K +A RV ++ GV PN ++++ +++A T + DEM++
Sbjct: 119 NAVINVFGRAKMWEKALRVKADIIEAGVTPNVVTWTSIIEACATAGLVERVFQEFDEMLS 178
Query: 170 AGFAPSKETLKKVRRRCV 187
AG P+ + + + CV
Sbjct: 179 AGCCPNVDCYNALLQACV 196
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
FG+ PD+++Y ALI + G+ ++ +A+ VFE ++ G KPN Y+ L++ + + D+
Sbjct: 4 FGVAPDLYTYRALIDSCGRCNESSKAAVVFETMLKDGFKPNVFVYNSLMNVSVGDLDE 61
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ + P+ + N +I + + A + FE + SS PDI SYN+LI GK
Sbjct: 503 KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESS-DCKPDIISYNSLINCLGKNGD 561
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA F + G+ P+ ++YS L++ + A S+ D M+ G P+
Sbjct: 562 VDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 615
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
INC+ D+D A+ F + GL PD+ +Y+ LI FGK K A +F+ +
Sbjct: 553 INCL----GKNGDVDEAHMRFLEMQDK-GLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 607
Query: 133 VSLGVKPNAMSYSLLVDA 150
++ G PN ++Y++L+D
Sbjct: 608 ITQGCCPNIVTYNILLDC 625
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ A LDR+Y+ F+ + PD ++Y +I GK+ + E+ +F
Sbjct: 269 IFAYNMLLDALAKDEQLDRSYKVFKDMKLKH-CNPDEYTYTIMIRMTGKMGRAEESLALF 327
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E +++ G PN ++Y+ ++ A + A+ + M+ P++ T + V E
Sbjct: 328 EEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAE 387
Query: 190 MDEESNDRVEALAKKF 205
D V ++ KF
Sbjct: 388 GQLGRLDEVLEVSNKF 403
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C++ D DRA+ + + S+ G DI +YN L+ A K ++ + +VF+ +
Sbjct: 239 CLLQAHIRSRDSDRAFNVYMEMWSN-GYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKL 297
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKA--ALSVIDEMVNAGFAPS 175
P+ +Y++++ +T + +A +L++ +EM+ G P+
Sbjct: 298 KHCNPDEYTYTIMI--RMTGKMGRAEESLALFEEMLTKGCTPN 338
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
GL PD+ SY+ LI A+GK ++ EA VFE ++ GV+P SY++L+DA
Sbjct: 310 GLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDA 359
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 17 AYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVY------------FQLENLSRAE 64
AYG + + EE + F + V +RK + L + F+ R E
Sbjct: 324 AYGKARRE-EEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRVE 382
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
P + + ++L N +++ A + F + GL P++ Y L+ + KL +
Sbjct: 383 P---DLCSYTTMVLAYVNASEMNGAEKFFRRIKED-GLKPNVVVYGTLMKGYSKLNNLEK 438
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
RV+E + GV+PN Y+ ++DA N D A+ EM G+ P ++
Sbjct: 439 VMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDFGNAVIWFKEMEARGYPPDQK 491
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 39/55 (70%)
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E S +++ + G+KP+ +SYSLL+ A+ R ++ AL+V +EM++AG P++++
Sbjct: 298 EVSNIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKS 352
>gi|308081228|ref|NP_001183307.1| uncharacterized protein LOC100501704 [Zea mays]
gi|238010656|gb|ACR36363.1| unknown [Zea mays]
Length = 178
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ Y A++ AF K+ K +A R+F + GV PNA SY LL+ A
Sbjct: 37 GAIPEVVIYTAVVEAFCKVAKLDDAVRIFRKMQGNGVIPNAFSYWLLIQGLYKGGRLDDA 96
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220
+ EM AG AP+ ET + + + D E L + F R + K+I +
Sbjct: 97 VGFCVEMFEAGLAPNAETFVGLLDAVCK---TKGVDEGENLVRSFQDRNFAIDEKSIRDH 153
Query: 221 LEYSASYA 228
L+ ++
Sbjct: 154 LDKKGPFS 161
>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +A N VI G + D A + + G DI YN LI A GK + E
Sbjct: 501 PP--DIATYNLVIQGLGKMGRADLASSVLDKLMKQGGYL-DIVMYNTLIDALGKAGRIDE 557
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A+ +FE + G+ P+ ++Y+++++ H K A + M++AG P+ T
Sbjct: 558 ANNLFEQMKISGLNPDVVTYNIMIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVT 611
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC + ++ A + F + + G PD YN+L+ K +K EA ++FE +V
Sbjct: 161 LIQGCCKSYQMEDATKIFSEMQYN-GFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQD 219
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAA 160
GV+ + +Y++L+D N +A
Sbjct: 220 GVRASCWTYNILIDGLCKNGRAEAG 244
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S L PD+ +YN+LI+ K +A V+E L G +P+A +Y +L+ +
Sbjct: 112 ASGSLDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQM 171
Query: 158 KAALSVIDEMVNAGFAP 174
+ A + EM GF P
Sbjct: 172 EDATKIFSEMQYNGFLP 188
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 486 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 544
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ YS+++ R AA + EM+ +G S T V C
Sbjct: 545 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 604
Query: 188 REMDEESNDRVE---ALAKKFDIRMNTENRKNILFNLEYSASY 227
+E+N +E A+ KFDI I FN+ SA +
Sbjct: 605 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISAMF 638
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++D+A + + S G+ PD+ +Y+ +I K K +A RV E +V
Sbjct: 173 NSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 231
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN+++Y+ L+ + + ++ V +M + G P+
Sbjct: 232 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 273
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G+ P + + N+ I+A K +T EA +F+ +V G KP+ +SYS ++ + T D
Sbjct: 266 SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDS 325
Query: 158 KAA--LSVIDEMVNAGFAPSKET 178
A ++ + M+ G AP+K
Sbjct: 326 CLADVHNIFNLMLTKGIAPNKHV 348
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D+A+ F + G+ P I N++I K+K+ +A + + +V
Sbjct: 140 LIYGFVKDGEVDKAHCLFLEMMEQ-GVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 198
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +YSL++D ++ A V+++MV AG P+ T
Sbjct: 199 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSIT 241
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 413 PP--SEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 470
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 471 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 521
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P K V N +I A +D+A FE + + G+ PD ++ +I + ++
Sbjct: 338 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRI 394
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +A F H+V +GV P+ Y L+ + + A +I EM+N P
Sbjct: 395 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 449
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 482 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 541
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 542 LTVFRDMLHKGVKPT 556
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G PDI SY+ +++ + + + +F +++ G+ PN +++L++A+
Sbjct: 304 GPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMD 363
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + ++M N G P T V
Sbjct: 364 KAMLIFEDMQNKGMIPDTVTFATV 387
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD SY +LIY F K + +A +F ++ GV P + + ++ ++ A
Sbjct: 130 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 188
Query: 161 LSVIDEMVNAGFAP 174
S++ +MV++G AP
Sbjct: 189 ESIVQKMVDSGIAP 202
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENL 60
+ R + +FE AY M + F P +S Y V+ C+ E FQL
Sbjct: 92 NFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKA----FQLFQE 147
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ V ++ + +++A F+ + G P++ +Y ALI+A+ K +
Sbjct: 148 MKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQD-GCAPNVVTYTALIHAYLKTR 206
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
K A+ +FE ++S G PN ++Y+ L+D H + + A + M N
Sbjct: 207 KLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKN 255
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N +++A+Q F+ + + G+TPD+++Y L+ F K+ +A F+ + G PN
Sbjct: 133 CNASKVEKAFQLFQEMKRN-GITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPN 191
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L R A + + M++ G P+
Sbjct: 192 VVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPN 226
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
+YF++ + EP +V ++ G + A E + S G P+ Y+AL
Sbjct: 265 IYFRIVDSELKEP---NVVTYGALVDGLCKAHKVKEARDLLETM-SLEGCEPNQIIYDAL 320
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F K+ K EA VF ++ G PN +YS L+D ++ AL V+ +M+
Sbjct: 321 IDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSC 380
Query: 173 APS 175
AP+
Sbjct: 381 APN 383
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A++ F+ + G+TPD +Y +I + K+ EA +F+ + G+KP+ ++Y+
Sbjct: 632 LPEAHELFKDMKER-GITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYT 690
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDR 197
+++ L + + A + +EM++ G P TLK RC+++ ++ R
Sbjct: 691 VIIKGLLNSGHTEIAFQLYNEMIDMGMTPGA-TLK----RCIQKANKRQFHR 737
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD +Y +I + K EA +F+ + G+ P+A++Y+++++ + + A
Sbjct: 611 GFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREA 670
Query: 161 LSVIDEMVNAGFAP 174
+ +M G P
Sbjct: 671 HELFKDMKERGIKP 684
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A VI G N LD A F + GL PD++ Y AL++ + + +A V++
Sbjct: 297 AYTAVIRGFCNETKLDEAESVFLEMEKQ-GLVPDVYVYCALVHGYCNSRNFDKALAVYKS 355
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
++S G+K N + +S ++ H + + AL V+D
Sbjct: 356 MISRGIKTNCVIFSCIL--HCLD-EMGRALEVVD 386
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G PD+ +YN L F + + FEA + ++ S GV+PN+ ++ ++++
Sbjct: 465 GFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEG 514
>gi|410110119|gb|AFV61139.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
javanica]
Length = 379
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G TPD+ +YNA+I FGK K EA + + + G PN SY
Sbjct: 5 DYSKAIAIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGXMPNTSSY 63
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 64 SXLLTMYVENKKFLEALSVFSEM 86
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A +C+I G L +A + + ++ G+ DI + ++I KL + +A +F+
Sbjct: 468 AYHCLIQGFCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P+A+ Y++L+D + + AL V D MV+AG P+
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD YN L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 590
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 591 LSLFREMLQKGIKPS 605
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + +++A + F+A+ S+ G+ P++ Y L+ + K+ + E +F ++
Sbjct: 540 NMLMDGYCLVGKMEKALRVFDAMVSA-GIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-----RCVR 188
G+KP+ + Y++++D A EM +G A +K T V R RC
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 658
Query: 189 E 189
E
Sbjct: 659 E 659
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ +YN +I F K +A +F+ +V G+ P+ ++YS +V A R A +
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN G P T
Sbjct: 278 FLRQMVNKGVLPDNWT 293
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI+++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 391 GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 450
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G P K
Sbjct: 451 MEKFNQMIDQGVVPDK 466
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--KPNAMSYSLLVDAHLTNRDQ 157
G PD+ SYN L+ + K+ +A + + G P+ ++Y+ ++D D
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A + EMV G P T V
Sbjct: 238 NKACDLFKEMVQRGIPPDLVTYSSV 262
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ + N L+ + K K EA VF+ + G P+ SY+++++ + T
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381
Query: 162 SVIDEMVNAGFAP 174
+ D M+ G AP
Sbjct: 382 DLFDLMLGDGIAP 394
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN LIY + + EA RVF+ + + P+ ++ + L+ + K A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345
Query: 161 LSVIDEMVNAGFAP 174
V D M G P
Sbjct: 346 RDVFDTMAMKGQNP 359
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N DLD AY F + + ++ +YN +I+AF + A ++F+ +V + P
Sbjct: 577 CKN-GDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGP 635
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-RCVREMDEESNDRV 198
+ +Y L+VD + + EM+ GF PS TL +V CV + E+ +
Sbjct: 636 DGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGII 695
Query: 199 EALAKK 204
+ +K
Sbjct: 696 HRMVQK 701
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ + N +I G + ++ A + + + + G+ PD+++YN+L+ K K +
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMMDN-GVDPDVYTYNSLLNGLCKTSKYEDVM 516
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ +V G PN ++++L+++ AL +++EM N P T
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVT 568
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +YN LIY K K EA LV+ G++P++ +Y+ L+ + + A
Sbjct: 281 GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLA 340
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
++ V GF P + T + +
Sbjct: 341 ERILVNAVFNGFVPDEFTYRSL 362
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +YN LI + K A R+ + V G P+ +Y L+D + A
Sbjct: 316 GLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRA 375
Query: 161 LSVIDEMVNAGFAPS 175
L++ +E + G P+
Sbjct: 376 LALFNEALGKGIKPN 390
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL + +Y ALI+ F K K+ EA F +V G PN +S LVD + A
Sbjct: 389 GLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAV 448
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
L + DE++ G P K + + RR R+
Sbjct: 449 LLIPDELMKRGLPPDKAVYRSLIRRLCRK 477
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P + S+ L+ + + +A RVF+ + + G+ P+A + + L+ A R A V
Sbjct: 114 PRVPSW--LVLVLAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRV 171
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206
DEM AG A S + C++ D R EAL + D
Sbjct: 172 FDEMARAGLAVSTHVYNAMLHVCLKAGDAA---RAEALVTRMD 211
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D ++N+LI+ K + EA+++F + + P+ ++Y+ L+D + + + A
Sbjct: 249 GIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEA 308
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRR 185
+ + EM G P T + R+
Sbjct: 309 VKLRGEMEATGMLPGVATYNAILRK 333
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD H+ AL+ A + + T A RVF+ + G+ + Y+ ++ L D A
Sbjct: 144 GLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARA 203
Query: 161 LSVIDEMVNAG 171
+++ M AG
Sbjct: 204 EALVTRMDAAG 214
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD RAF + +F G + D++++ L V C RK + +F N+
Sbjct: 140 GDAIRAFHQMGDFGVKAG--VGDVDQL---------LYVLCKRKHVKQAQE-FFDKVNVE 187
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
P K+ + + + G ++ D A + FE + G D+ +YN+L+ A K
Sbjct: 188 -VMPNAKTYSIL---MRGWGDVGDSSEARKLFEEMRER-GCAVDVVAYNSLLEALCKGGN 242
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++F + S G+ P+A SYS+ + A+ D +A V+D M P+
Sbjct: 243 VDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPN 296
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V A N ++ ++D AY+ F +GS+ GL PD SY+ I A+ ++ A +V
Sbjct: 227 VVAYNSLLEALCKGGNVDEAYKLFREMGSN-GLAPDACSYSIFIRAYCEVNDIHSAFQVL 285
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + PN +Y+ +V + A ++DEM+ G +P
Sbjct: 286 DRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSP 330
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ A+Q + + + L P++ +YN ++ K +K EA ++ + ++ GV P+ SY
Sbjct: 277 DIHSAFQVLDRM-RRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY 335
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ + H + + AL +I M P + T V + +R
Sbjct: 336 NAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLR 379
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 24 DMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA------EPPYK---SVAAIN 74
D++ + F SL +A R + TL S + + L A P Y+ N
Sbjct: 174 DLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYN 233
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
++ GC + ++A + +E + G +P++ +YN ++ KL EA V+E +V+
Sbjct: 234 ALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVA 293
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+P+ ++Y ++ + D +A V EM+ G P
Sbjct: 294 NNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVP 333
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-----VKPNA 141
D A F + S G P + S+NAL+ AF + ++ +A F L S G + PN
Sbjct: 101 DAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNL 159
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+Y++++ + D A+++ D + G AP + T
Sbjct: 160 QTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRIT 196
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D+A + A+ + GL PDI SYN I +T E ++ +++ G+ P A+++++
Sbjct: 633 DKAASLWMAILEN-GLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNI 691
Query: 147 LVDA 150
LV A
Sbjct: 692 LVRA 695
>gi|356511257|ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Glycine max]
Length = 585
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ D A Q ++ + S G P + SY A I ++ EA+R ++ ++S V PN +Y
Sbjct: 180 NFDEAMQMWDQMKSK-GFHPTVVSYTAYIKILFHNQRVKEATRAYKEMISSRVAPNCHTY 238
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
++L+D + + K AL + ++M AG P K + RC +
Sbjct: 239 TVLMDYLIGSGQYKEALEIFEKMQEAGAQPDKAACNILIERCSK 282
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 48/90 (53%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+++A+ F V S G D ++Y ++ FG+ + +F+ + G+K ++++Y+
Sbjct: 110 MEKAWLFFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSMKHLFQQMQEKGIKLDSVTYT 169
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++ ++ + A+ + D+M + GF P+
Sbjct: 170 SMMHWLSSSGNFDEAMQMWDQMKSKGFHPT 199
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +++ A F + G+ PDI SYN LI F K+KK +A +F
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQG-GVNPDIRSYNILINGFCKIKKVDKAMNLF 240
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + PN ++Y+ L+D + AL ++D+M + G P+ T + +
Sbjct: 241 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFK- 299
Query: 190 MDEESNDRVEALAKKF 205
D+ AL KF
Sbjct: 300 --THQVDKAIALITKF 313
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 57 LENLSRAEPPYKSVAAI--NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
L+ L R + + A+ N VI G ++ A+ + + S G++P++ +Y+ALI
Sbjct: 62 LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK-GISPNVVTYSALIS 120
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F + K +A +F ++ +KP+ ++++LVD +R K +V M+ G P
Sbjct: 121 GFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIP 180
Query: 175 SKETLKKV--RRRCVREMD 191
T + R V+E++
Sbjct: 181 DVVTYNSLVDGYRLVKEVN 199
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ + N +I G I +D+A F + + P++ +YN+LI K + A ++
Sbjct: 217 IRSYNILINGFCKIKKVDKAMNLFNEMHCK-NIIPNVVTYNSLIDGLSKSGRISYALQLV 275
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + GV PN ++Y+ ++DA A+++I + + G PS T
Sbjct: 276 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYT 324
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +YN+L+ + +K+ A +F + GV P+ SY++L++ + A
Sbjct: 177 GIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKA 236
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ +EM P+ T
Sbjct: 237 MNLFNEMHCKNIIPNVVT 254
>gi|326504240|dbj|BAJ90952.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 263
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P + Y V+ C D+ E +S P S A NC D+ A
Sbjct: 72 PTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCP--SPATYNCFFKEYRGRKDVSGAL 129
Query: 91 QTFEAVGSSFGLT-PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+ + + + T PDIHSYN L+ F KL + ++ + V P+ SY+LLV
Sbjct: 130 ELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVH 189
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLK------------KVRRRCVREMDEES 194
+ A EM+ GF P K T + + RR + +DEES
Sbjct: 190 GFCAKEKWREACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEES 246
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY+ +++ + + K +F + G+ P +Y+ ++ + + A
Sbjct: 34 GIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDA 93
Query: 161 LSVIDEMVNAGFAPSKET 178
S++ EMV+ G PS T
Sbjct: 94 ESLLGEMVSEGVCPSPAT 111
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DRA++ + G P+I++YNA+I F K K EA +V S G+K + ++Y
Sbjct: 364 SFDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITY 422
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESN 195
++L+ H AL + D MV G P E + C + EES
Sbjct: 423 TILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQ 474
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I +RA++ F + S P++H+Y +I + + K A + +V
Sbjct: 284 LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQ 343
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G+KPN +Y+ L+ H A ++++M GF P+ T V
Sbjct: 344 GLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAV 390
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 44 RKGFETLDSVYFQ--LENLSRAE--PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
R G ET VY + + ++RA P +S A+ V + ++D A
Sbjct: 146 RVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVD----ALLAAMWR 201
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+G + D + ++ + + + + S F ++ +G PN ++Y+ +D R K
Sbjct: 202 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQ 261
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V++EMV G P+ T
Sbjct: 262 AFHVLEEMVGRGLKPNVYT 280
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV-SLGVKPNAMSYSLLVDAHL 152
E VG GL P+++++ LI K+ T A R+F L+ S KPN +Y++++ +
Sbjct: 268 EMVGR--GLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYC 325
Query: 153 TNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ MV G P+ T
Sbjct: 326 REGKLARAEMLLVRMVEQGLKPNTNT 351
>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
Length = 815
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY L+ ++G+ ++ +A VF + KPN ++Y+ L+DA+ +N A
Sbjct: 385 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 444
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ + +M G P+ ++ + C R + + D V + A+ I +NT
Sbjct: 445 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L ++ P N +I + + +A F ++ PD+ ++ ++
Sbjct: 270 YFELMKGAKVRP---DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 326
Query: 113 IYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++ + +K E R VFE +V+ G+KPN +SY+ L+ A+ + ALSV+ ++ G
Sbjct: 327 MHLYS-VKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNG 385
Query: 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
P V C+ ++ R AK+ + M E RK
Sbjct: 386 IIPD-----VVSYTCL--LNSYGRSRQPGKAKEVFLMMRKERRK 422
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +A +F + KP+A +Y L++AH + A++++D+M+
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 205
Query: 169 NAGFAPSKETLKKVRRRC 186
A APS+ T + C
Sbjct: 206 RAAIAPSRSTYNNLINAC 223
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD +Y+ALI A G+ + A + + ++ + P+ +Y+ L++A ++ + +
Sbjct: 172 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 231
Query: 160 ALSVIDEMVNAGFAP 174
AL V +M + G P
Sbjct: 232 ALEVCKKMTDNGVGP 246
>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
Length = 514
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD+ SYNALI K K EA ++E + G P+ +++ L++ L ++ A
Sbjct: 423 GISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLA 482
Query: 161 LSVIDEMVNAGFAPSK---ETL-KKVRRR 185
V D+M+ G+ K ETL K +R R
Sbjct: 483 CQVWDQMMEKGYTLDKFLSETLIKAIRSR 511
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ Y ++ F K +K A VF ++ +G+ P+ +SY+ L++ A+
Sbjct: 389 LIPDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAM 448
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
+ +EM G P + T K +
Sbjct: 449 LLYEEMQIRGCYPDEVTFKLI 469
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 25 MEEIFSPFTSLYPLVVAC--SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M+E P Y +++ +++ FE++ S+ ++E L+ P N +I
Sbjct: 94 MDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVE-LAGVRP---DSIFFNALINAFVE 149
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL-VSLGVKPNA 141
+ A TF + S G P ++N LI +G + K E+ RVF+ + V V+PN
Sbjct: 150 AKRMGEAINTFWKMKHS-GCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNL 208
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y++LV A +R+ + A V+ +M GF P
Sbjct: 209 TTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEP 241
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ PDI +Y+ + F L + VF+ ++ G++P+ YS+L + + +
Sbjct: 341 FGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEK 400
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A ++ +M + G P+ T V D ES RV
Sbjct: 401 AEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRV 439
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD Y+ L F + ++ +A + + LG+ PN ++++ ++ + D ++A
Sbjct: 377 GIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESA 436
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V D+M +G P+ T + +
Sbjct: 437 MRVYDKMCKSGVYPNLRTFETL 458
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KK ++A VF+HL+ G KP+ ++Y++L+ A R ++ S++ E+ AG P
Sbjct: 81 KKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRP 135
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
FE S++ +L +++ +P ++ CVI CA + DL Q + + L D+
Sbjct: 81 FEDAMSIFSELISVTEHKPDNFTLP---CVIKACAGLLDLGLG-QIIHGMATKMDLVSDV 136
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
NALI +GK EA +VFEH+ + N +S++ ++ N + + + E
Sbjct: 137 FVGNALIAMYGKCGLVEEAVKVFEHM----PERNLVSWNSIICGFSENGFLQESFNAFRE 192
Query: 167 MV--NAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207
M+ F P TL V C E D E V LA K +
Sbjct: 193 MLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +++GC + L A E + S + PD +YN +I F K + EA R+ E +
Sbjct: 271 NILVVGCCRLGWLKEAANVIELM-SQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEME 329
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR--EMD 191
+L + P+ ++Y+ L++ + + +I+EM G P+ T + + V+ +MD
Sbjct: 330 NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMD 389
Query: 192 E 192
E
Sbjct: 390 E 390
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 20 DSIIDMEE--IFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77
D ++DM+ +F T+ LVV C R G+ + +L + + P N +I
Sbjct: 253 DLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVP---DAWTYNVMI 309
Query: 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
G + A + E + + L+PD+ +YN LI + + E ++ E + G+
Sbjct: 310 SGFCKQGRIAEAMRLREEM-ENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM 368
Query: 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMDE 192
KPN+++Y+++V + + +M +G P T + C V +MDE
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDE 425
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 85 DLDRAYQTFEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
DL + + +G G+ PD+ SY +I + K K +A+ L++ G+KPNA+
Sbjct: 559 DLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAV 618
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y+ L+ + N + A+ V+D M + G P+ T
Sbjct: 619 IYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVT 654
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC ++ A + + + G PD + +N++I+A+ L K EA + +
Sbjct: 516 NIMIQGCCKDSKIEEALKLRDDMIRK-GFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMK 574
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
GV+P+ +SY ++D + +D + A ++E++ G P+
Sbjct: 575 IEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPN 616
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
SR V +I G I +D A FE + S + P+ +Y L+YA+ K
Sbjct: 678 SRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEM-RSRSIPPNKITYTTLMYAYCKSG 736
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLV 148
EAS++F+ +VS G+ P+ +SY+ LV
Sbjct: 737 NNEEASKLFDEMVSSGIVPDNVSYNTLV 764
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
Y +I K+ K EA FE + S + PN ++Y+ L+ A+ + + + A + DEM
Sbjct: 689 GYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEM 748
Query: 168 VNAGFAP 174
V++G P
Sbjct: 749 VSSGIVP 755
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99
V S +G L F + + RA P SV N ++ A +L + F+ +
Sbjct: 166 VTSSARGSLRLAVDAFHVLSSRRASP---SVKTCNALLEALARTGNLGATCKVFDEMRDC 222
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
+TP+ +SY ++I A K+ K + ++ L+ G++ A+ Y+LL+DA +
Sbjct: 223 KTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRV 282
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A+ + M + APS T
Sbjct: 283 DEAIRLKGRMEESRVAPSMVT 303
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL +I + NALI+ + K A+ V +V+ G++ + ++Y++++ + + A
Sbjct: 472 GLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEA 531
Query: 161 LSVIDEMVNAGFAP 174
L + D+M+ GF P
Sbjct: 532 LKLRDDMIRKGFKP 545
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131
A +C+I G L +A + + ++ G+ DI + ++I KL + +A +F+
Sbjct: 468 AYHCLIQGFCTHGSLLKAKELISEIMNN-GMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526
Query: 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V++G+ P+A+ Y++L+D + + AL V D MV+AG P+
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD YN L+ + + K +A RVF+ +VS G++PN + Y LV+ +
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 590
Query: 161 LSVIDEMVNAGFAPS 175
LS+ EM+ G PS
Sbjct: 591 LSLFREMLQKGIKPS 605
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G + +++A + F+A+ S+ G+ P++ Y L+ + K+ + E +F ++
Sbjct: 540 NMLMDGYCLVGKMEKALRVFDAMVSA-GIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR-----RCVR 188
G+KP+ + Y++++D A EM +G A +K T V R RC
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFD 658
Query: 189 E 189
E
Sbjct: 659 E 659
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+PD+ +YN +I F K +A +F+ +V G+ P+ ++YS +V A R A +
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277
Query: 163 VIDEMVNAGFAPSKET 178
+ +MVN G P T
Sbjct: 278 FLRQMVNKGVLPDNWT 293
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--KPNAMSYSLLVDAHLTNRDQ 157
G PD+ SYN L+ + K+ +A + + G P+ ++Y+ ++D D
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDV 237
Query: 158 KAALSVIDEMVNAGFAPSKETLKKV 182
A + EMV G P T V
Sbjct: 238 NKACDLFKEMVQRGIPPDLVTYSSV 262
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I ++N LI A+ +A +F + GVKP+ ++Y ++ A A
Sbjct: 391 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 450
Query: 161 LSVIDEMVNAGFAPSK 176
+ ++M++ G P K
Sbjct: 451 MEKFNQMIDQGVVPDK 466
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ + N L+ + K K EA VF+ + G P+ SY+++++ + T
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381
Query: 162 SVIDEMVNAGFAP 174
+ D M+ G AP
Sbjct: 382 DLFDLMLGDGIAP 394
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN LIY + + EA RVF+ + + P+ ++ + L+ + K A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345
Query: 161 LSVIDEMVNAGFAP 174
V D M G P
Sbjct: 346 RDVFDTMAMKGQNP 359
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G +L+ A + E + + GL PD +Y LI F + K A+ +
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSL 504
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F ++ G+ PN ++Y+ ++D + AL++ +MV +G PS +T
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N +I K + EA + H+ PNA +Y+ L+ H N + A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++ D MV G P+ T + C EE+ D +E + +K
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK 301
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKS 69
+FE A G + + P T Y ++ C FET +++ + LS P S
Sbjct: 356 GKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM--LSHGSLP--S 411
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
N +I + D+ +A F+ + + G +P++ +YN LIY + K A R+
Sbjct: 412 TQTYNEIIKCFCLMGDIQKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLL 470
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E + G+KP+A +Y+ L+ + A S+ M+ G +P+ T
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N+ +D A F + S G P +YN +I F K EA +V
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVES-GNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQ 581
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
G+ PN ++Y+ +D N A + EM + P+ T + +E E
Sbjct: 582 GLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641
Query: 196 DRVEALAK 203
+ LA+
Sbjct: 642 EMYNLLAR 649
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+ +Y +LI + A +F+ +V G PN+++YS L++ + + A+ +
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294
Query: 164 IDEMVNAGFAPSKET 178
++EMV G P+ T
Sbjct: 295 LEEMVQKGIEPTVYT 309
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ ++ ++ A K K EA + + ++ GV+P+ ++Y+ L+D H + A+
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321
Query: 162 SVIDEMVNAGFAP 174
V D MV GFAP
Sbjct: 322 KVFDMMVRKGFAP 334
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS---SFGLT 103
F TLD L PP S+ ++ A + + Y T ++ + SFG+
Sbjct: 34 FNTLDDALSSFNRLLHMHPP-PSIVDFAKLLTSIAKM----KHYSTVLSLSTQMDSFGVP 88
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++++ N LI +F L + A V ++ LG +P+ +++ L+ AL +
Sbjct: 89 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 148
Query: 164 IDEMVNAGFAPSKET 178
D+M++ GF P+ T
Sbjct: 149 FDKMIDEGFQPNVVT 163
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G +L+ A F + SS GL P + +YN +I+ K EA+++F
Sbjct: 441 IQVYNIIIDGMCRAGELEAARDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF 499
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ P+ +Y+ + L N + A+ +++EM+ GF+ T
Sbjct: 500 MEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V + +I G I +D+A FE + + PD +YN L++ + + +A +F
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALF 394
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+V+ G P+ ++YS+L+D+ N + A++++ + + P
Sbjct: 395 HEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNP 439
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ +Y L+ + EA +VF+ +V G P+ +SY+ L++ + A
Sbjct: 296 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 355
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + +EM + P +T
Sbjct: 356 MYLFEEMCRKEWIPDTKT 373
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +Y LI K+ T A R+ + +P+ + Y+ ++D+ +R A
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215
Query: 161 LSVIDEMVNAGFAP 174
++ +MV G +P
Sbjct: 216 FNLFSQMVGQGISP 229
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D A + F+ + G PD+ SY LI + K+ K +A +FE + P+ +Y
Sbjct: 316 EMDEAVKVFDMMVRK-GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 374
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ L+ + A+++ EMV G P
Sbjct: 375 NTLMHGLCHVGRLQDAIALFHEMVARGQMP 404
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ S+N ++ A K K EA V + ++ GV+PN ++Y+ L+D H + A+
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326
Query: 162 SVIDEMVNAGFAPS 175
V D MV G P+
Sbjct: 327 KVFDTMVCKGCMPN 340
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG---SSFGLT 103
F T+D + R +PP S N ++ A + + + T ++ SFG+
Sbjct: 39 FNTIDGAISSFNRMLRMQPP-PSTVDFNKLLTSIAKM----KHHSTLLSLSHQMDSFGIP 93
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+I++ + LI +F L + A V ++ LG +P+ +++ L+ AL +
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHL 153
Query: 164 IDEMVNAGFAP 174
D+M+ GF P
Sbjct: 154 FDKMIGEGFRP 164
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ +Y LI K+ T A R+ +V +PN +Y+ ++D+ +R A
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220
Query: 161 LSVIDEMVNAGFAP 174
++ EMV G +P
Sbjct: 221 FNLFSEMVTKGISP 234
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +YN+LI+A L + + + +V + P+ +S++ +VDA A
Sbjct: 231 GISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEA 290
Query: 161 LSVIDEMVNAGFAPSKETLKKVR-RRC-VREMDE 192
V+D+M+ G P+ T + C + EMDE
Sbjct: 291 HDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDE 324
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +L+ A F + SS GL PD+ +Y+ +I + EAS++F +
Sbjct: 450 NIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMD 508
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
G N Y+ + L N + A+ ++ EMV GF+ T+
Sbjct: 509 ENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 554
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +YN +I + K ++ EA +F +V+ G+ P+ +Y+ L+ A + K ++
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMD-EESNDRVEALAKK 204
++EMV++ P + V +E E++D V+ + ++
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +Y AL+ L + EA +VF+ +V G PN +SY+ L++ + + A
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + EM P T
Sbjct: 361 MYLFGEMCRQELIPDTVT 378
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V + N +I G I +D+A F + L PD +Y+ LI+ +++ +A +
Sbjct: 340 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQ-ELIPDTVTYSTLIHGLCHVERLQDAIAL 398
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F +V+ PN ++Y +L+D NR A++++ + + P
Sbjct: 399 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDP 444
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D A + F+ + G P++ SYN LI + K+++ +A +F + + P+ ++Y
Sbjct: 321 EMDEAVKVFDTMVCK-GCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 379
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
S L+ + A+++ EMV P+ T +
Sbjct: 380 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 415
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +YN+LIY F + + EA R+F + G PN ++Y+ L+D + D + A
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEA 319
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
L + + M G P T + R+ E
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEE 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++ ALI+ F KL + A ++ G P+ +YS LVD++ +++A
Sbjct: 400 GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAV 459
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
+ + DE+ G + + RR + ES +R+ L +
Sbjct: 460 IRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ 502
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + DL+ A + E + GL P + +YN+++ + K +A+R+ +
Sbjct: 306 LIDGYCRVNDLEEALRLREVMEVE-GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSER 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
V+P+ ++ + L++A+ D +A+ V +M+ AG P + T K
Sbjct: 365 KVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK 409
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD + N LI A+ K+ A +V + ++ G+KP+ ++ L+ + +A
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 427
Query: 164 IDEMVNAGFAPSKET 178
+ EM++AGF+PS T
Sbjct: 428 LFEMLDAGFSPSYST 442
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q FE + G P +H+ L+ + K + T +V++ +V +GV PN +++L+
Sbjct: 146 AIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLI 204
Query: 149 DAHLTNRDQKAALSVIDEM 167
A + D + A +++EM
Sbjct: 205 HACCKSGDVEKAEQLLNEM 223
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL DI Y ALI K+ K A R+F + G+K +++ Y+ L A+ AA
Sbjct: 470 GLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAA 529
Query: 161 LSVIDEM 167
++DEM
Sbjct: 530 SDMLDEM 536
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + SYN +I + A+ VF ++ G+KPN ++YS+L+D + D + A
Sbjct: 463 GVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYA 522
Query: 161 LSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKK 204
+ D M APS T + C ES DR++ L ++
Sbjct: 523 FGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQE 567
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 26 EEIFSPFTSLYPLVVA-CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E P Y +++ C + G +D Y ++ N + + +V +N +I G
Sbjct: 357 ENGICPNNVTYAVIIEWCCKNG--NMDKAY-EIYNQMKNKDISPTVFNVNSLIRGYLKAR 413
Query: 85 DLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
+ A + F EAV ++ +YN+L+ K K EA ++E +V GV+P+ +S
Sbjct: 414 SPEEASKLFDEAVACGIA---NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVS 470
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ ++ H D +A V EM+ G P+
Sbjct: 471 YNNMILGHCQQGDMDSANGVFVEMLEKGLKPN 502
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P +YN +I F K A V+ + +GV PN +Y+ L++ + + A
Sbjct: 568 GFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLA 627
Query: 161 LSVIDEMVNAGF 172
L V+DEM N G
Sbjct: 628 LKVMDEMKNKGI 639
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 36/142 (25%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI----------YAFG- 117
SV + N +ILG D+D A F + GL P++ +Y+ L+ YAFG
Sbjct: 467 SVVSYNNMILGHCQQGDMDSANGVFVEMLEK-GLKPNLITYSVLMDGYFKKGDTEYAFGL 525
Query: 118 ------------------------KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
K +T E+ + LV G P M+Y+ ++D +
Sbjct: 526 YDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK 585
Query: 154 NRDQKAALSVIDEMVNAGFAPS 175
+AL+V EM G +P+
Sbjct: 586 EGSVNSALAVYTEMCKIGVSPN 607
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G ++ A + + G++P++ +Y LI F K A +V + +
Sbjct: 577 NCIIDGFVKEGSVNSALAVYTEM-CKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMK 635
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ G++ + Y L+D D A ++ E+ G +P+K
Sbjct: 636 NKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNK 678
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ D + + +I A + K EA F + GV+ +A +YS++++A D
Sbjct: 216 ASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDS 275
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
AAL ++ EM + G+ P + +V C+++
Sbjct: 276 VAALGLLREMRDKGWVPHEVIFTRVIGVCMKQ 307
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D A + + + + G+ D+ Y ALI F + AS++ L +G+ PN + Y
Sbjct: 623 NMDLALKVMDEMKNK-GIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVY 681
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGF 172
S ++ ++ +AAL + M+N G
Sbjct: 682 SSMISGFRKLQNMEAALHLHKRMINEGI 709
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 563 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 621
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ YS+++ R AA + EM+ +G S T V C
Sbjct: 622 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 681
Query: 188 REMDEESN---DRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
+E+N +++ A+ KFDI I FN+ SA +
Sbjct: 682 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISAMF 715
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++D+A + + S G+ PD+ +Y+ +I K K +A RV E +V
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 307
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN+++Y+ L+ + + ++ V +M + G P+
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 349
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D+A+ F + G+ P I N++I K+K+ +A + + +V
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQ-GVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +YSL++D ++ A V+++MV AG P+ T
Sbjct: 275 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSIT 317
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 490 PP--SEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 547
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 548 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 598
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P K V N +I A +D+A FE + + G+ PD ++ +I + ++
Sbjct: 415 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRI 471
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +A F H+V +GV P+ Y L+ + + A +I EM+N P
Sbjct: 472 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 526
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 559 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 618
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 619 LTVFRDMLHKGVKPT 633
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
SS G+ P + + N+ I+A K +T EA +F+ +V G KP+ +SYS
Sbjct: 342 SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYS 389
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD SY +LIY F K + +A +F ++ GV P + + ++ ++ A
Sbjct: 206 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 264
Query: 161 LSVIDEMVNAGFAP 174
S++ +MV++G AP
Sbjct: 265 ESIVQKMVDSGIAP 278
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G +L+ A + E + + GL PD +Y LI F + K A+ +
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSL 504
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
F ++ G+ PN ++Y+ ++D + AL++ +MV +G PS +T
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P + ++N +I K + EA + H+ PNA +Y+ L+ H N + A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
++ D MV G P+ T + C EE+ D +E + +K
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK 301
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKS 69
+FE A G + + P T Y ++ C FET +++ + LS P S
Sbjct: 356 GKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM--LSHGSLP--S 411
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
N +I + D+ +A F+ + + G +P++ +YN LIY + K A R+
Sbjct: 412 TQTYNEIIKCFCLMGDIQKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLL 470
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E + G+KP+A +Y+ L+ + A S+ M+ G +P+ T
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G N+ +D A F + S G P +YN +I F K EA +V
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVES-GNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQ 581
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195
G+ PN ++Y+ +D N A + EM + P+ T + +E E
Sbjct: 582 GLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641
Query: 196 DRVEALAK 203
+ LA+
Sbjct: 642 EMYNLLAR 649
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+ +Y +LI + A +F+ +V G PN+++YS L++ + + A+ +
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294
Query: 164 IDEMVNAGFAPSKET 178
++EMV G P+ T
Sbjct: 295 LEEMVQKGIEPTVYT 309
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155
V S G +P++ SYN +I+ F + + +A +F ++ GV P+ ++YS +DA R
Sbjct: 217 VKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKAR 276
Query: 156 DQKAALSVIDEMVNAGFAPSKET 178
A V+ +M++ GF P K T
Sbjct: 277 AMDKAELVLRQMISNGFEPDKVT 299
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD+ ++N+LI +G + K +A V + ++S+G++P+ ++YS L+D + N
Sbjct: 537 IGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDD 596
Query: 160 ALSVIDEMVNAGFAPSKET 178
L + EM++ G P+ T
Sbjct: 597 GLILFREMLSKGVKPTTIT 615
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G + +++A+ +A+ S G+ PD+ +Y+AL+ + + + + +F
Sbjct: 543 VITFNSLIDGYGLVGKMEKAFGVLDAM-ISVGIEPDVVTYSALLDGYCRNGRIDDGLILF 601
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++S GVKP ++Y +++ + A + EM+ +G
Sbjct: 602 REMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +Y +I AF ++ + +A F ++++G+KP+ + Y+ L+ + + A
Sbjct: 432 GVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKA 491
Query: 161 LSVIDEMVNAGF 172
+I EM++ G
Sbjct: 492 KELISEMMSRGI 503
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 76 VILG--CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
+ILG C N D D A F+ +G+ + +I N +I A K++K EA+ +F+ +
Sbjct: 653 IILGGLCRNNCD-DEAIALFKKLGA-MNVKFNIAIINTMIDAMYKVRKREEANELFDSIS 710
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
+ G+ PNA +Y +++ L + A ++ M +G APS L + R
Sbjct: 711 ATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIR 761
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 17 AYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAI--- 73
AYG + M+E FT + V + T+ + + ++ L+ A + + A+
Sbjct: 411 AYGKRGM-MDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLK 469
Query: 74 ------NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
N +I G +L +A + + S P+ +N++I + K + EA
Sbjct: 470 PDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQD 529
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F+ ++ +G +P+ ++++ L+D + + A V+D M++ G P
Sbjct: 530 IFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEP 576
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G + + F + + GL PDI + N+ + + K K+ EA+ F+ +
Sbjct: 301 NCMIHGYSILGQWKETAGMFREM-TRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMA 359
Query: 134 SLGVKPNAMSYSLLVDAH 151
+ G KP+ ++YS+L+ +
Sbjct: 360 AKGHKPDLVTYSVLLHGY 377
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D YN LI A+GK EA +F + GV P+A +Y ++ A A
Sbjct: 397 GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADA 456
Query: 161 LSVIDEMVNAGFAP 174
+ ++M+ G P
Sbjct: 457 MDKFNQMIAMGLKP 470
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD +Y+ +I GK A +F +V G PN ++Y++++ R+ + A
Sbjct: 477 GLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMA 536
Query: 161 LSVIDEMVNAGFAPSKET 178
L + +M NAGF P K T
Sbjct: 537 LKLYHDMQNAGFQPDKVT 554
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI+ +G EA VF + +G +P+ ++Y L+D H A
Sbjct: 407 GCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVA 466
Query: 161 LSVIDEMVNAGFAP 174
+S+ M AG +P
Sbjct: 467 MSMYKRMQEAGLSP 480
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ ++ S++ E +V G +PN ++Y+ L+ + K A
Sbjct: 372 GFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEA 431
Query: 161 LSVIDEMVNAGFAPSKET 178
L+V +EM G P + T
Sbjct: 432 LNVFNEMQEVGCEPDRVT 449
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 74/134 (55%), Gaps = 20/134 (14%)
Query: 24 DMEEI-FSPFTSLYPLVV-ACSRKGF-ETLDSVYFQLE--NLSRAEPPYKSVAAINCVIL 78
DM+ F P Y +V+ A G+ E +SV+ +++ N EP Y +
Sbjct: 542 DMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLV------- 594
Query: 79 GCANIW----DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
++W ++++A + ++A+ ++ GL P++ + N+L+ AF +L + +A + + +V+
Sbjct: 595 ---DLWGKAGNVEKASEWYQAMLNA-GLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVA 650
Query: 135 LGVKPNAMSYSLLV 148
LG++P+ +Y+LL+
Sbjct: 651 LGLRPSLQTYTLLL 664
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 562 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 620
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ YS+++ R AA + EM+ +G S T V C
Sbjct: 621 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 680
Query: 188 REMDEESN---DRVEALAKKFDIRMNTENRKNILFNLEYSASY 227
+E+N +++ A+ KFDI I FN+ SA +
Sbjct: 681 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISAMF 714
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++D+A + + S G+ PD+ +Y+ +I K K +A RV E +V
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 307
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN+++Y+ L+ + + ++ V +M + G P+
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 349
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G+ P + + N+ I+A K +T EA +F+ +V G KP+ +SYS ++ + T D
Sbjct: 342 SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDS 401
Query: 158 KAA--LSVIDEMVNAGFAPSKET 178
A ++ + M+ G AP+K
Sbjct: 402 CLADVHNIFNLMLTKGIAPNKHV 424
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D+A+ F + G+ P I N++I K+K+ +A + + +V
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQ-GVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +YSL++D ++ A V+++MV AG P+ T
Sbjct: 275 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSIT 317
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 489 PP--SEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 546
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 547 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 597
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P K V N +I A +D+A FE + + G+ PD ++ +I + ++
Sbjct: 414 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRI 470
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ +A F H+V +GV P+ Y L+ + + A +I EM+N P
Sbjct: 471 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 525
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 558 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 617
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 618 LTVFRDMLHKGVKPT 632
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G PDI SY+ +++ + + + +F +++ G+ PN +++L++A+
Sbjct: 380 GPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMD 439
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + ++M N G P T V
Sbjct: 440 KAMLIFEDMQNKGMIPDTVTFATV 463
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD SY +LIY F K + +A +F ++ GV P + + ++ ++ A
Sbjct: 206 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 264
Query: 161 LSVIDEMVNAGFAP 174
S++ +MV++G AP
Sbjct: 265 ESIVQKMVDSGIAP 278
>gi|255073313|ref|XP_002500331.1| predicted protein [Micromonas sp. RCC299]
gi|226515594|gb|ACO61589.1| predicted protein [Micromonas sp. RCC299]
Length = 709
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
K + N +I N + A + F +G + GL+P ++SY L+ A ++ + A +
Sbjct: 184 KEIKFFNRIIKDFGNDKQMGFAEEAFRRIGDA-GLSPTVYSYTNLLNACVRVGELDRARK 242
Query: 128 VFEHLVSLGVKPNAMSYSLLV----------DAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
V++ +++ GV PN ++Y++LV +A T RD A E G AP+
Sbjct: 243 VWDDMIAAGVDPNEVTYTVLVKGLAQDGLLAEAARTVRDMTAQSRAGVE----GVAPNVR 298
Query: 178 TLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
T + R CVR D D A + D++
Sbjct: 299 TFSTLLRNCVRHADPGVADECIAAMRDADVK 329
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 64 EP-PYKSVAAINCVILGCANIWDLDRAY-QTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
EP PY S+AA++ G A I +R + + + T +I +N +I FG K+
Sbjct: 145 EPVPYSSLAALD---EGMARIMKSNRKRSRDAQTLLKRAVKTKEIKFFNRIIKDFGNDKQ 201
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
A F + G+ P SY+ L++A + + A V D+M+ AG P++ T
Sbjct: 202 MGFAEEAFRRIGDAGLSPTVYSYTNLLNACVRVGELDRARKVWDDMIAAGVDPNEVTYTV 261
Query: 182 VRR------------RCVREMDEESNDRVEALA 202
+ + R VR+M +S VE +A
Sbjct: 262 LVKGLAQDGLLAEAARTVRDMTAQSRAGVEGVA 294
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 25 MEEIFSPFTSLYPLVVAC--SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M+E P Y +++ +++ FE++ S+ ++E L+ P N +I
Sbjct: 94 MDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVE-LAGVRP---DSIFFNALINAFVE 149
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL-VSLGVKPNA 141
+ A TF + S G P ++N LI +G + K E+ RVF+ + V V+PN
Sbjct: 150 AKRMGEAINTFWKMKHS-GCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNL 208
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y++LV A +R+ + A V+ +M GF P
Sbjct: 209 TTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEP 241
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ PDI +Y+ + F L + VF+ ++ G++P+ YS+L + + +
Sbjct: 341 FGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEK 400
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A ++ +M + G P+ T V D ES RV
Sbjct: 401 AEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRV 439
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD Y+ L F + ++ +A + + LG+ PN ++++ ++ + D ++A
Sbjct: 377 GIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESA 436
Query: 161 LSVIDEMVNAGFAPSKETLK 180
+ V D+M +G P+ T +
Sbjct: 437 MRVYDKMCKSGVYPNLRTFE 456
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KK ++A VF+HL+ G KP+ ++Y++L+ A R ++ S++ E+ AG P
Sbjct: 81 KKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRP 135
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I +GK K EA + + + GV PN +SY
Sbjct: 108 DYSKAISIFSRLKRS-GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSY 166
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N ALSV EM
Sbjct: 167 STLLSVYVENHKFLEALSVFAEM 189
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----------DLDRAYQTFE 94
+ TL SVY + A + + +NC + L NI + DR + +
Sbjct: 166 YSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR 225
Query: 95 AVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
+ + P++ SYN ++ +G+ + EA +F + ++ N ++Y+ ++ +
Sbjct: 226 KMD----IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKT 281
Query: 155 RDQKAALSVIDEMVNAGFAPSKET 178
+ + A +++ EM + G P+ T
Sbjct: 282 MEHEKATNLVQEMQSRGIEPNAIT 305
>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY L+ ++G+ ++ +A VF + KPN ++Y+ L+DA+ +N A
Sbjct: 385 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 444
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ + +M G P+ ++ + C R + + D V + A+ I +NT
Sbjct: 445 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L ++ P N +I + + +A F ++ PD+ ++ ++
Sbjct: 270 YFELMKGAKVRP---DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 326
Query: 113 IYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++ + +K E R VFE +V+ G+KPN +SY+ L+ A+ + ALSV+ ++ G
Sbjct: 327 MHLY-SVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNG 385
Query: 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
P V C+ ++ R AK+ + M E RK
Sbjct: 386 IIPD-----VVSYTCL--LNSYGRSRQPGKAKEVFLMMRKERRK 422
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +A +F + KP+A +Y L++AH + A++++D+M+
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 205
Query: 169 NAGFAPSKETLKKVRRRC 186
A APS+ T + C
Sbjct: 206 RAAIAPSRSTYNNLINAC 223
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD +Y+ALI A G+ + A + + ++ + P+ +Y+ L++A ++ + +
Sbjct: 172 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 231
Query: 160 ALSVIDEMVNAGFAP 174
AL V +M + G P
Sbjct: 232 ALEVCKKMTDNGVGP 246
>gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
Length = 456
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F +D+ Y L + A V N +I G + L+++ FE + S G+TPDI
Sbjct: 55 FSGMDAAYSVLYRMREAGIS-PDVITYNSLIAGATRNFSLEQSLDLFEEMLQS-GITPDI 112
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
SYN L++ F L K EA RVF+ ++ + P+ ++++ +++ + A+ +
Sbjct: 113 WSYNTLMHCFFILGKPDEAYRVFKDIILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRN 172
Query: 167 MVNAGFAPSKET 178
+ GF P T
Sbjct: 173 LQRHGFIPQLVT 184
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 91 QTFEAV---GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
Q EAV G G+ PD+ +YN LI + + A V + G+ P+ ++Y+ L
Sbjct: 24 QKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNSL 83
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ N + +L + +EM+ +G P
Sbjct: 84 IAGATRNFSLEQSLDLFEEMLQSGITP 110
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI K+ + A R+ + G++PNA++Y+ L+ + +R +
Sbjct: 177 GFIPQLVTYNILINGLCKVDRLRAAIRMLNEAMDSGLEPNAVTYTTLMKSCFRSRQYERG 236
Query: 161 LSVIDEMVNAGFA 173
+ +M N G+A
Sbjct: 237 FEIFSKMKNKGYA 249
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N + +F K ++ +A V + +GV P+ ++Y+ L+D + AA SV+ M
Sbjct: 11 NICVASFCKSQQMQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMRE 70
Query: 170 AGFAP 174
AG +P
Sbjct: 71 AGISP 75
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC+I G +I Q E + S+ GL PD ++Y +L+ K + EA F+ ++
Sbjct: 273 NCLIHGYLSIGKWKEVVQMLEEM-SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+KP +Y +L+ + T S +D MV G +P
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSP 372
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
LE + R PP V VI G DRA F+ + + G P+ ++YN LI+ +
Sbjct: 223 LEMIDRGIPP--DVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN-GFKPNNYTYNCLIHGY 279
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ K E ++ E + + G+KP+ +Y L++ N + A D M+ G P
Sbjct: 280 LSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKV 339
Query: 177 ET 178
T
Sbjct: 340 ST 341
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD SY LI + +T EA +VF+ +VS+G+ P ++Y+ L+ + + A
Sbjct: 509 GVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDA 568
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ EM+ G P T +
Sbjct: 569 YCLFREMLRKGVTPGVVTYNTI 590
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 69 SVAAINCVILGCANIWDLDRAYQ-TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++ N ++ G + +RA + +E + G+ P+ +N LI + + E R
Sbjct: 443 NIVVFNSLVYGLCTVDKWERAEELVYEMLDQ--GICPNAVFFNTLICNLCNVGRVMEGRR 500
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + + +GV+P+A SY+ L+ + LT R +A V D MV+ G +P++ T
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE-KVFDGMVSIGLSPTEVT 551
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A F + GL+P++ +Y ALI A KL + +A F +++ GV PN + ++
Sbjct: 390 IDKAMDIFNKM-RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFN 448
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LV T + A ++ EM++ G P+
Sbjct: 449 SLVYGLCTVDKWERAEELVYEMLDQGICPN 478
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD H +N A+ K +A +F + G+ PN ++Y L+DA A
Sbjct: 369 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDA 428
Query: 161 LSVIDEMVNAGFAPS 175
++M+N G P+
Sbjct: 429 EVKFNQMINEGVTPN 443
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G DI++YN ++ K EA ++F+ L S G++ N +++++++ A L ++ A
Sbjct: 614 GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 673
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196
+ + + G P+ T + V + E E D
Sbjct: 674 MDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFD 709
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKS---------VAAINCVILGCANIWDLDRAYQTFEAVG 97
+ T+ FQ + S A+ Y + + N ++ G +D A++ F+++
Sbjct: 587 YNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLC 646
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL +I ++ +I A K + +A +F + + G+ PN ++Y L+ + +
Sbjct: 647 SK-GLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSL 705
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
+ S+ M G AP+ + L + RR + D R A K D R
Sbjct: 706 EEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS---RAGAYLSKLDER 753
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D A + F+ + S GL+P +YN L++ + + +A +F ++ GV P ++Y+
Sbjct: 531 DEAEKVFDGM-VSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT 589
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAG 171
++ + A + M+N+G
Sbjct: 590 ILHGLFQTKRFSEAKELYLNMINSG 614
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PDI +YN+LIY F + + EA R+F + G PN ++Y+ L+D + D + A
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEA 319
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
L + + M G P T + R+ E
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEE 348
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++ ALI+ F KL + A ++ G P+ +YS LVD++ +++A
Sbjct: 400 GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAV 459
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203
+ + DE+ G + + RR + ES +R+ L +
Sbjct: 460 IRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ 502
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + DL+ A + E + GL P + +YN+++ + K +A+R+ +
Sbjct: 306 LIDGYCRVNDLEEALRLREVMEVE-GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSER 364
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
V+P+ ++ + L++A+ D +A+ V +M+ AG P + T K
Sbjct: 365 KVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK 409
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD + N LI A+ K+ A +V + ++ G+KP+ ++ L+ + +A
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 427
Query: 164 IDEMVNAGFAPSKET 178
+ EM++AGF+PS T
Sbjct: 428 LFEMLDAGFSPSYST 442
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A Q FE + G P +H+ L+ + K + T +V++ +V +GV PN +++L+
Sbjct: 146 AIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLI 204
Query: 149 DAHLTNRDQKAALSVIDEM 167
A + D + A +++EM
Sbjct: 205 HACCKSGDVEKAEQLLNEM 223
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL DI Y ALI K+ K A R+F + G+K +++ Y+ L A+ AA
Sbjct: 470 GLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAA 529
Query: 161 LSVIDEM 167
++DEM
Sbjct: 530 SDMLDEM 536
>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 810
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY L+ ++G+ ++ +A VF + KPN ++Y+ L+DA+ +N A
Sbjct: 385 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 444
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ + +M G P+ ++ + C R + + D V + A+ I +NT
Sbjct: 445 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L ++ P N +I + + +A F ++ PD+ ++ ++
Sbjct: 270 YFELMKGAKVRP---DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 326
Query: 113 IYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++ + +K E R VFE +V+ G+KPN +SY+ L+ A+ + ALSV+ ++ G
Sbjct: 327 MHLY-SVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNG 385
Query: 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
P V C+ ++ R AK+ + M E RK
Sbjct: 386 IIPD-----VVSYTCL--LNSYGRSRQPGKAKEVFLMMRKERRK 422
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +A +F + KP+A +Y L++AH + A++++D+M+
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 205
Query: 169 NAGFAPSKETLKKVRRRC 186
A APS+ T + C
Sbjct: 206 RAAIAPSRSTYNNLINAC 223
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD +Y+ALI A G+ + A + + ++ + P+ +Y+ L++A ++ + +
Sbjct: 172 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 231
Query: 160 ALSVIDEMVNAGFAP 174
AL V +M + G P
Sbjct: 232 ALEVCKKMTDNGVGP 246
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+DRA F + S G PDI SYN L+ A + + A + L G P +SY+
Sbjct: 347 MDRA-MAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYN 405
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205
++D K AL +++EMV G P T + RE E R +
Sbjct: 406 TVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDM 465
Query: 206 DIRMNTENRKNILFNL 221
IR NT IL L
Sbjct: 466 GIRPNTVLYNAILLGL 481
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L+ EP V A N ++ G LD A + + + PD ++YN LI
Sbjct: 117 LAACEP---DVMAYNAMVAGYCVTGQLDAARRLV----ADMPMEPDSYTYNTLIRGLCGR 169
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+T A V + ++ G P+ ++Y++L++A K A+ ++DEM G AP
Sbjct: 170 GRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAP 224
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+G TP+ SYN +++AF K KK A E +VS G P+ +SY+ L+ A + A
Sbjct: 325 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDA 384
Query: 160 ALSVIDEMVNAGFAP 174
A+ ++ ++ + G P
Sbjct: 385 AVELLHQLKDKGCTP 399
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI +Y+ + + + EA R F + +G++PN + Y+ ++ R+ A
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNA 490
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + M++ G P++ T
Sbjct: 491 IDLFIYMISNGCMPNEST 508
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN ++ + + +A + L S G +PN +SY++++ T + A
Sbjct: 221 GCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDA 280
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM G+ P+ T
Sbjct: 281 EKLMAEMSQKGYPPNVVT 298
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A + F V G+ P+ YNA++ K ++T A +F +++S G PN +Y+
Sbjct: 452 IEEAIRAFCKV-QDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYT 510
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
+L++ K A ++ E+ + G SK + K R
Sbjct: 511 ILIEGLTYEGLVKEARELLGELCSRGVV-SKGLINKAAIR 549
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L C R G++ +L + RA+ + N V+ G +D A + +++
Sbjct: 198 LEATCKRSGYKQ----AMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSL- 252
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G P+ SYN ++ ++ +A ++ + G PN +++++L+
Sbjct: 253 PSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLV 312
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A+ V+D++ G P+
Sbjct: 313 EPAMEVLDQIPKYGCTPN 330
>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
Length = 637
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+ G+ P++ SY++LI KL K A ++ +V+ G++PN ++Y+ L+ H N
Sbjct: 415 TEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGI 474
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
AA EM+ G +P+ T+ + RE
Sbjct: 475 DAAFRFHKEMIENGISPNAITVSVLVDGLCRE 506
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A+ ++ + +S GL P+ + LI F K K+ EA +F + GV P Y
Sbjct: 263 DVNSAFVLYQELLNS-GLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVY 321
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
+ L+D + D + ALS+ EM G P + T V R
Sbjct: 322 NSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVR 361
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 43 SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGL 102
SR +E D E L R P SV N +I C + +A + ++ + + +
Sbjct: 159 SRCAWELFD------EMLRRGMVP--SVVTYNTLINACRYQGAVAKAQEMWDQMVAR-QI 209
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
P++ +Y ++I + +A R+F+ + G++PN +Y++L+ H D +A
Sbjct: 210 DPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFV 269
Query: 163 VIDEMVNAGFAPS 175
+ E++N+G P+
Sbjct: 270 LYQELLNSGLIPN 282
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + +YNALI + + EA + +GV+PN +SYS L+D H + A
Sbjct: 383 GVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIA 442
Query: 161 LSVIDEMVNAGFAPSKET 178
+++ EMV G P+ T
Sbjct: 443 MAIYTEMVAKGIEPNVVT 460
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-TNRDQKA 159
G+ P++ +Y ALI+ K A R + ++ G+ PNA++ S+LVD NR Q A
Sbjct: 453 GIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDA 512
Query: 160 ALSVIDE 166
V++
Sbjct: 513 VRFVMEH 519
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
+P + ++ CV+ I D +R + + G + P+ ++YN L+ +
Sbjct: 210 DPNVITYTSMICVLCEEGCIGDAERLFDAMKEAG----MRPNQYTYNVLMSGHCQGDDVN 265
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
A +++ L++ G+ PNA+ ++ L+D + A + +M G AP+
Sbjct: 266 SAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPT 317
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I C+ +L+ A FE + +S PD+ +YNA++ G+ K EA R+F
Sbjct: 293 VITYNTLISACSQSSNLEDAVTVFEDMIAS-ECRPDLWTYNAMVSVHGRCGKAEEAERLF 351
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV G P+A++Y+ L+ A + +++V AGF ++ T
Sbjct: 352 RELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEIT 400
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 25 MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+E+ F P Y L+ A +++G +D V E L +A K+ N +I +
Sbjct: 355 VEKGFMPDAITYNSLLYAFAKEG--NVDKVEHTCEQLVKAGFK-KNEITYNTMIHMYGKM 411
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD A ++ + + G TPD +Y +I + GK+ + EA +V E + G+KP ++
Sbjct: 412 GRLDLAVGLYDEM-RAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIA 470
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+S L+ A+ + A + D M+ +G P +
Sbjct: 471 FSALICAYAKGGRRADAENTFDCMIASGVKPDR 503
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P + +++ALI A+ K + +A F+ +++ GVKP+ ++Y +++D + D +
Sbjct: 463 GLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522
Query: 161 LSVIDEMVNAGFAP 174
L + +M+N + P
Sbjct: 523 LCLYRKMMNDNYRP 536
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN LI A + +A VFE +++ +P+ +Y+ +V H + A
Sbjct: 288 GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEA 347
Query: 161 LSVIDEMVNAGFAPSKETLKKV-----RRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ E+V GF P T + + V +++ V+A KK +I NT
Sbjct: 348 ERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNT 403
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD +YN+L+YAF K + E LV G K N ++Y+ ++ + A
Sbjct: 358 GFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLA 417
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + DEM G P T
Sbjct: 418 VGLYDEMRAMGCTPDAVT 435
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + G PD+ +YNA+I FGK K EA + + + GV PN SY
Sbjct: 19 DYSKAISIFSRL-KRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSY 77
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N+ ALSV EM
Sbjct: 78 STLLTMYVENKKFLEALSVFSEM 100
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G + +++ A+ +A+ +S G+ P+ + Y L+ + K + +A V
Sbjct: 542 NVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 600
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCV 187
F ++ GVKP ++ YS+++ R AA + EM+ +G S T V C
Sbjct: 601 FRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCR 660
Query: 188 REMDEESNDRVE---ALAKKFDIRMNTENRKNILFNLEYSASY 227
+E+N +E A+ KFDI I FN+ SA +
Sbjct: 661 NNCTDEANMLLEKLFAMNVKFDI---------ITFNIVISAMF 694
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SS G+ P + + N+ I+A K +T EA +F+ +V G KP+ +SYS ++ + T D
Sbjct: 322 SSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDS 381
Query: 158 KAA--LSVIDEMVNAGFAPSKET 178
A ++ + M+ G AP+K
Sbjct: 382 CLADVHNIFNLMLTKGIAPNKHV 404
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++D+A + + S G+ PD+ +Y+ +I K K +A RV E +V
Sbjct: 229 NSIIKELCKMKEMDKAESIVQKMVDS-GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 287
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G +PN+++Y+ L+ + + ++ V +M + G P+
Sbjct: 288 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 329
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G ++D+A+ F + G+ P I N++I K+K+ +A + + +V
Sbjct: 196 LIYGFVKDGEVDKAHCLFLEMMEQ-GVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 254
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+ P+ +YSL++D ++ A V+++MV AG P+ T
Sbjct: 255 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSIT 297
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP S A C+I GC N +L +A + + + P + ++++I K + E
Sbjct: 469 PP--SEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAE 526
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ + +V G +PN ++++ L++ + + + A +++D M + G P+
Sbjct: 527 GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 577
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P K V N +I A +D+A FE + + G+ PD ++ +I + ++
Sbjct: 394 LTKGIAPNKHV--FNILINAYARCGMMDKAMLIFEDMQNK-GMIPDTVTFATVISSLCRI 450
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ +A F H+V +GV P+ Y L+ + + A +I EM+N P
Sbjct: 451 GRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG--- 507
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL-FN 220
K + + +E RV D+ + T R N++ FN
Sbjct: 508 VKYFSSIINNLCKEG--RVAEGKDIMDMMVQTGQRPNVVTFN 547
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N+L+ + + EA + + + S+G++PN Y LVD + N A
Sbjct: 538 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 597
Query: 161 LSVIDEMVNAGFAPS 175
L+V +M++ G P+
Sbjct: 598 LTVFRDMLHKGVKPT 612
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
G PDI SY+ +++ + + + +F +++ G+ PN +++L++A+
Sbjct: 360 GPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMD 419
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A+ + ++M N G P T V
Sbjct: 420 KAMLIFEDMQNKGMIPDTVTFATV 443
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD SY +LIY F K + +A +F ++ GV P + + ++ ++ A
Sbjct: 186 GLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKA 244
Query: 161 LSVIDEMVNAGFAP 174
S++ +MV++G AP
Sbjct: 245 ESIVQKMVDSGIAP 258
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 4 LQRAFITLNEFETAYGDSIID--MEEIFSPFTSLY-PLVVACSRKGFETLDSVYFQLENL 60
L RAF +N E A + D +E SP +Y L+ S+ G LD F L +
Sbjct: 492 LIRAFCNVNNIEKAM--ELFDEMLEAGCSPDAIVYYTLISGLSQAG--KLDRASFVLSKM 547
Query: 61 SRA--EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118
A P + + N +I G LD AY+ + + ++ G+ PD +YN LI F K
Sbjct: 548 KEAGFSP---DIVSFNVLINGFCRKNKLDEAYEMLKEMENA-GIKPDGVTYNTLISHFSK 603
Query: 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A R+ + +V G+ P ++Y L+ A+ N + A+ + +M + P
Sbjct: 604 TGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + LDRA + + G +PDI S+N LI F + K EA + + + +
Sbjct: 527 LISGLSQAGKLDRASFVLSKMKEA-GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA 585
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+KP+ ++Y+ L+ D A ++ +MV G P+
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT 625
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 62 RAEPP-YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
R++P + NC+I G ++ A + F+ + G+ P++ + N L+ K
Sbjct: 407 RSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD-GVPPNVVTLNTLVDGMCKHG 465
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ A F + G+K NA++Y+ L+ A + + A+ + DEM+ AG +P
Sbjct: 466 RINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSP 519
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSP-FTSLYPLVVACSRKGFETLDSVYFQLENL 60
G L RA L++ + A FSP S L+ RK LD Y L+ +
Sbjct: 535 GKLDRASFVLSKMKEAG----------FSPDIVSFNVLINGFCRK--NKLDEAYEMLKEM 582
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
A V N +I + D A++ + + GL P + +Y ALI+A+
Sbjct: 583 ENAGIKPDGVT-YNTLISHFSKTGDFSTAHRLMKKMVKE-GLVPTVVTYGALIHAYCLNG 640
Query: 121 KTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
EA ++F + S V PN + Y++L+++ ALS++D+M G P+ T
Sbjct: 641 NLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNT 699
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 86 LDRAYQTFEAV----GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPN 140
+D A + FE + + F + PD+ +YN LI K+ + E + E + S PN
Sbjct: 356 VDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPN 415
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
++Y+ L+D + +AA + D+M G P+ TL
Sbjct: 416 TVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTL 454
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP +V +N ++ G ++ A + F + GL + +Y ALI AF + +
Sbjct: 448 PP--NVVTLNTLVDGMCKHGRINGAVEFFNEMQGK-GLKGNAVTYTALIRAFCNVNNIEK 504
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A +F+ ++ G P+A+ Y L+ A V+ +M AGF+P
Sbjct: 505 AMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSP 554
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I GC ++ E + S G+ P+ ++N ++ FGK K EAS
Sbjct: 172 VVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAV 231
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVR 188
+V GV P+ +Y+ +++ A ++DEM G P TL + C+
Sbjct: 232 VKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCME 291
Query: 189 EMDEES 194
+ EE+
Sbjct: 292 KKPEEA 297
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + +D A + + + S L PD+ +YN LI K + + E R+
Sbjct: 137 VWTYNTLVKGLCDEGKIDEAIRVRDEM-ESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195
Query: 130 EHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
E + S GV+PNA++++++V A + +MV +G +P
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSP 241
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L A++ + + GL PDI + N +++ KK EA +
Sbjct: 247 NTMINGFCKAGKLGEAFRMMDEMARK-GLKPDICTLNTMLHTLCMEKKPEEAYELTVKAR 305
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDE 192
G + ++Y L+ + + + AL + +EM G PS + +R C+ +
Sbjct: 306 KRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTD 365
Query: 193 ESNDRVEALAKK 204
++ D++ L +K
Sbjct: 366 QAVDKLNELLEK 377
>gi|224115578|ref|XP_002332091.1| predicted protein [Populus trichocarpa]
gi|222874911|gb|EEF12042.1| predicted protein [Populus trichocarpa]
Length = 521
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
SFG+ P++ +YNALI+A K+ A + + ++ G+ P+ ++Y+LL+ A
Sbjct: 361 SFGVVPNVFTYNALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAAHAGHIH 420
Query: 159 AALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
AL + DEM+ G P T + +R CV+ +E+ + + L K
Sbjct: 421 YALQLYDEMLRGGCNPDMITYTELIRGYCVKYNTKEAEELLAKLLK 466
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
GL PD+ +YN L+ + K K EA + + ++ +GV P+ +SY L++
Sbjct: 257 MGLLPDVFTYNTLVSSLCKSGKLDEACYMHDVMLRMGVAPDEVSYKLIIQG 307
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ ++N ++ K+ + +A + ++ G PN +Y+ + + A
Sbjct: 94 GFVPDVLTHNYMVNGLCKMIELEKADWLIREMLDKGPSPNCATYNTFIKGYCLLDKVDKA 153
Query: 161 LSVIDEMVNAGFAPSKET 178
L + M N+G P++ T
Sbjct: 154 LHLFSSMANSGTKPNRVT 171
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 25 MEEIFSPFTSLYPLVVAC--SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
M+E P Y +++ +++ FE++ S+ ++E L+ P N +I
Sbjct: 94 MDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVE-LAGVRP---DSIFFNALINAFVE 149
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL-VSLGVKPNA 141
+ A TF + S G P ++N LI +G + K E+ RVF+ + V V+PN
Sbjct: 150 AKRMGEAINTFWKMKHS-GCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNL 208
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+Y++LV A +R+ + A V+ +M GF P
Sbjct: 209 TTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEP 241
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ PDI +Y+ + F L + VF+ ++ G++P+ YS+L + + +
Sbjct: 341 FGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEK 400
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198
A ++ +M + G P+ T V D ES RV
Sbjct: 401 AEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRV 439
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD Y+ L F + ++ +A + + LG+ PN ++++ ++ + D ++A
Sbjct: 377 GIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESA 436
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V D+M +G P+ T + +
Sbjct: 437 MRVYDKMCKSGVYPNLRTFETL 458
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KK ++A VF+HL+ G KP+ ++Y++L+ A R ++ S++ E+ AG P
Sbjct: 81 KKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRP 135
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PDI +YN + A+ +T+ A + + + V+ + ++ +++ + + A
Sbjct: 238 GFEPDIVTYNTIASAYANNDETWRAEELIVEIQTR-VRTSERTWGIIIGGYCREGRLEEA 296
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
L + +M +AG P+ + + + D + +++ L KKF I+
Sbjct: 297 LRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIK 344
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ + P+ + N +I + + A + FE + SS PDI SYN+LI GK
Sbjct: 508 KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESS-DCKPDIISYNSLINCLGKNGD 566
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA F + G+ P+ ++YS L++ + A S+ D M+ G P+
Sbjct: 567 VDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 620
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
INC+ D+D A+ F + GL PD+ +Y+ LI FGK K A +F+ +
Sbjct: 558 INCL----GKNGDVDEAHMRFLEMQDK-GLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 612
Query: 133 VSLGVKPNAMSYSLLVDA 150
++ G PN ++Y++L+D
Sbjct: 613 ITQGCCPNIVTYNILLDC 630
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ A LDR+Y+ F+ + PD ++Y +I GK+ + E+ +F
Sbjct: 274 IFAYNMLLDALAKDEQLDRSYKVFKDMKLKH-CNPDEYTYTIMIRMTGKMGRAEESLALF 332
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
E +++ G PN ++Y+ ++ A + A+ + M+ P++ T + V E
Sbjct: 333 EEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAE 392
Query: 190 MDEESNDRVEALAKKF 205
D V ++ KF
Sbjct: 393 GQLGRLDEVLEVSNKF 408
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
C++ D DRA+ + + S G DI +YN L+ A K ++ + +VF+ +
Sbjct: 244 CLLQAHIRSRDSDRAFNVYMEMWSK-GYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKL 302
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKA--ALSVIDEMVNAGFAPS 175
P+ +Y++++ +T + +A +L++ +EM+ G P+
Sbjct: 303 KHCNPDEYTYTIMI--RMTGKMGRAEESLALFEEMLTKGCTPN 343
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ PDI +Y+ LI + K EA+++ +VS+G+KP+ ++YS L++ + K
Sbjct: 397 IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKD 456
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 457 ALVLFREMESSGVSP 471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 65 PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
PP V + + VI G DLD+ Y T+ + ++P++ +YN++I A K + +
Sbjct: 85 PP--DVVSYSTVINGFFKEGDLDKTYSTYNEMLDQ-RISPNVVTYNSIIAALCKAQTVDK 141
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A V +V GV P+ M+Y+ +V ++ K A+ + +M + G P
Sbjct: 142 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP 191
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I +D+A + + S G+ PD +YN++++ F + EA
Sbjct: 122 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSGQPKEAIVF 180
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + S GV+P+ ++Y+ L+D N A + D M G P T
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITT 230
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++F+ +V +GVKP+ ++YS L+D + A ++ MV
Sbjct: 371 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 430
Query: 169 NAGFAP 174
+ G P
Sbjct: 431 SVGMKP 436
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GDL + + T NE +++ SP Y ++A K +T+D L +
Sbjct: 102 GDLDKTYSTYNEM----------LDQRISPNVVTYNSIIAALCKA-QTVDKAMEVLTTMV 150
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
++ N ++ G + A + + S G+ PD+ +YN+L+ K +
Sbjct: 151 KS-GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD-GVEPDVVTYNSLMDYLCKNGR 208
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA ++F+ + G+KP +Y L+ + T ++D MV G P+
Sbjct: 209 CTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 262
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+I +Y L+ + E + + +V G+ PN +S+LV A+ + A
Sbjct: 223 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 282
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V +M G P+ T V
Sbjct: 283 MLVFSKMRQQGLNPNAVTYGAV 304
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD +Y+ LI + K+ + +A +F + S GV P+ ++Y++++ R
Sbjct: 431 SVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 490
Query: 159 AA 160
AA
Sbjct: 491 AA 492
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I +GK K EA + + + GV PN +SY
Sbjct: 240 DYSKAISIFSRLKRS-GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSY 298
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N ALSV EM
Sbjct: 299 STLLSVYVENHKFLEALSVFAEM 321
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 46 GFETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----------DLDRAYQTF 93
+ TL SVY + A + + +NC + L NI + DR + +
Sbjct: 297 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 356
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ + P++ SYN ++ +G+ + EA +F + ++ N ++Y+ ++ +
Sbjct: 357 RKMD----IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 412
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ + A +++ EM + G P+ T
Sbjct: 413 TMEHEKATNLVQEMQSRGIEPNAIT 437
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S+ + +I G + A++ FE + + PD +YN LI F +L + +A +
Sbjct: 229 SLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSI 288
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F + +PNA +Y+ L++ H + +AA V +EM+ +G P
Sbjct: 289 FGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQP 334
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ +YN L+ K ++ EA + E L S GV+ N SY ++++ + + + A
Sbjct: 366 GCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKA 425
Query: 161 LSVIDEMVNAGFAP 174
++ M+ GF P
Sbjct: 426 AGLLGMMLGRGFVP 439
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
P+ +Y LI K K EA+R VFE ++ GV+P+A+SY+ LV + + ++
Sbjct: 299 PNAFNYATLINGHCK-KGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGIN 357
Query: 163 VIDEMVNAG 171
++ EM G
Sbjct: 358 LVQEMWQKG 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,282,028,407
Number of Sequences: 23463169
Number of extensions: 123123131
Number of successful extensions: 375080
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4280
Number of HSP's successfully gapped in prelim test: 1398
Number of HSP's that attempted gapping in prelim test: 341017
Number of HSP's gapped (non-prelim): 32446
length of query: 228
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 91
effective length of database: 9,144,741,214
effective search space: 832171450474
effective search space used: 832171450474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)