BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027083
         (228 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
 pdb|1ZQ1|D Chain D, Structure Of Gatde Trna-Dependent Amidotransferase From
           Pyrococcus Abyssi
          Length = 633

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
           E   +FE LVS+GVKP +++ S+LV      R +    +V DE +   F
Sbjct: 484 ERDELFEELVSMGVKP-SLAASILVVVLKGLRKEVPIENVTDEHIREAF 531


>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Castanospermine
 pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Castanospermine
 pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45
 pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45
          Length = 556

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 373 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 429

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 430 FTTGKPWLK 438


>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
           The Substrate Sucrose
 pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
           The Substrate Sucrose
          Length = 556

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 373 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 429

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 430 FTTGKPWLK 438


>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
 pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
 pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
 pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
 pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Deoxynojirmycin
 pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
           Pseudomonas Mesoacidophila Mx-45 Complexed To The
           Inhibitor Deoxynojirmycin
          Length = 557

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 374 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 430

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 431 FTTGKPWLK 439


>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
          Length = 557

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 374 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 430

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 431 FTTGKPWLK 439


>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
           Glucose
 pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
           Glucose
 pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With The Substrate Sucrose
 pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With The Substrate Sucrose
 pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Trehalulose
 pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Trehalulose
 pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Isomaltulose
 pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
           Soaked With Isomaltulose
          Length = 557

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 374 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 430

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 431 FTTGKPWLK 439


>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
           Factors B And D
 pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
           Factors B And D
          Length = 912

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-----EMDEESNDR 197
           DQ A +S++D  +  GFAP  + LK++     R     E+D+  +DR
Sbjct: 644 DQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDR 690


>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
 pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
           Glucose
          Length = 556

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 373 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 429

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 430 FTTGKPWLK 438


>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
           Activation And Regulation
 pdb|2ICF|B Chain B, Crig Bound To C3b
 pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
 pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
 pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
 pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
           Human Complement Component C3b
          Length = 915

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-----EMDEESNDR 197
           DQ A +S++D  +  GFAP  + LK++     R     E+D+  +DR
Sbjct: 647 DQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDR 693


>pdb|2I07|B Chain B, Human Complement Component C3b
 pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
           B
 pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
           B
 pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
           B
 pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
           B
          Length = 915

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-----EMDEESNDR 197
           DQ A +S++D  +  GFAP  + LK++     R     E+D+  +DR
Sbjct: 647 DQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDR 693


>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
           Soaked With The Inhibitor Deoxynojirimycin
          Length = 584

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 114 YAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
           Y F  L+     E    F+  V  G    A +  LL +  LT+RD        D+  NAG
Sbjct: 401 YPFKTLQDFDDIEVKGFFQDYVETG---KATAEELLTNVALTSRDNARTPFQWDDSANAG 457

Query: 172 FAPSKETLK 180
           F   K  LK
Sbjct: 458 FTTGKPWLK 466


>pdb|2A73|B Chain B, Human Complement Component C3
          Length = 991

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-----EMDEESNDR 197
           DQ A +S++D  +  GFAP  + LK++     R     E+D+  +DR
Sbjct: 723 DQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDR 769


>pdb|2A74|C Chain C, Human Complement Component C3c
 pdb|2A74|F Chain F, Human Complement Component C3c
 pdb|2ICE|C Chain C, Crig Bound To C3c
 pdb|2ICE|F Chain F, Crig Bound To C3c
 pdb|2QKI|C Chain C, Human C3c In Complex With The Inhibitor Compstatin
 pdb|2QKI|F Chain F, Human C3c In Complex With The Inhibitor Compstatin
 pdb|3L3O|F Chain F, Staphylococcal Complement Inhibitor (Scin) In Complex With
           Human Complement Component C3c
 pdb|3L3O|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
           Human Complement Component C3c
 pdb|3NMS|C Chain C, Staphylococcal Complement Inhibitor (Scin) In Complex With
           Human Complement C3c
 pdb|3OHX|C Chain C, Molecular Basis For Complement Recognition And Inhibition
           Determined By Crystallographic Studies Of The
           Staphylococcal Complement Inhibitor (Scin) Bound To C3c
           And C3b
 pdb|3OHX|F Chain F, Molecular Basis For Complement Recognition And Inhibition
           Determined By Crystallographic Studies Of The
           Staphylococcal Complement Inhibitor (Scin) Bound To C3c
           And C3b
 pdb|3T4A|C Chain C, Structure Of A Truncated Form Of Staphylococcal Complement
           Inhibitor B Bound To Human C3c At 3.4 Angstrom
           Resolution
 pdb|3T4A|F Chain F, Structure Of A Truncated Form Of Staphylococcal Complement
           Inhibitor B Bound To Human C3c At 3.4 Angstrom
           Resolution
          Length = 343

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 156 DQKAALSVIDEMVNAGFAPSKETLKKV 182
           DQ A +S++D  +  GFAP  + LK++
Sbjct: 75  DQDATMSILDISMMTGFAPDTDDLKQL 101


>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
 pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
          Length = 1661

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 156  DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-----EMDEESN 195
            DQ A +S++D  +  GF+P  E LK +     R     EM+ +SN
Sbjct: 1394 DQDATMSILDISMMTGFSPDVEDLKTLSTGVDRYISKYEMNRDSN 1438


>pdb|3STP|A Chain A, Crystal Structure Of A Putative Galactonate Dehydratase
          Length = 412

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 43  SRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRA 89
           SR G+   D +    ENL R E   + +   N ++L C   W+LD A
Sbjct: 200 SRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYA 246


>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
           Activator
 pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
 pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
          Length = 455

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
           AL+++++++ A F   +E LKKV RR  +EMD
Sbjct: 2   ALTLVEQIL-AEFQLQEEDLKKVMRRMQKEMD 32


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,192,765
Number of Sequences: 62578
Number of extensions: 229296
Number of successful extensions: 652
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 21
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)