BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027083
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZD1|PPR58_ARATH Pentatricopeptide repeat-containing protein At1g26460,
mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1
SV=1
Length = 630
Score = 360 bits (923), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 164/229 (71%), Positives = 205/229 (89%), Gaps = 1/229 (0%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
+G+LQ+AF +L+E E+AY DS ++ EE+ SPFTSLYPLVVACS+KGFETLD VYFQLE+
Sbjct: 399 LGNLQKAFTSLHELESAYADSEKEVVEEMLSPFTSLYPLVVACSKKGFETLDEVYFQLES 458
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
LS+ + PYKSVAA+NC+ILGCAN WDLDRAYQTFEA+ +SFGLTP+I SYNAL+YAFGK+
Sbjct: 459 LSQGDTPYKSVAALNCIILGCANTWDLDRAYQTFEAISASFGLTPNIDSYNALLYAFGKV 518
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
KKTFEA+ VFEHLVS+GVKP++ +YSLLVDAHL NRD K+AL+V+D+M+ AGF PS+ETL
Sbjct: 519 KKTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETL 578
Query: 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASYA 228
KK+RRRCVREMD+E++D+VEALAKKF IRM +ENR+N+LFN++YS A
Sbjct: 579 KKLRRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYSRGRA 627
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLVDAHLTNRDQ 157
F + P+ SYN ++ A + ++T A ++ E ++ LG P+ SY L++ H
Sbjct: 185 FSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLGKDSLPDDESYDLVIGMHFGVGKN 244
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
A+ V+D + +G+ S + R CV
Sbjct: 245 DEAMKVMDTALKSGYMLSTSVFTECVRSCV 274
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA-NIWDLDRAYQTFEAV 96
LV AC++ G Y +E +RAE SV A+N +GC N+ ++DR ++ ++ +
Sbjct: 154 LVRACTQNG--DAQGAYEVIEQ-TRAEGFCVSVHALNN-FMGCLLNVNEIDRFWKVYKEM 209
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
S G +++++N +IY+F K K FEA VF ++ GV PN +S+++++D D
Sbjct: 210 -DSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGD 268
Query: 157 QKAALSVIDEM 167
+ AL ++ +M
Sbjct: 269 MRFALQLLGKM 279
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 45 KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG--L 102
K FE L SV++++ + +V + N +I G D+ A Q +G G +
Sbjct: 233 KLFEAL-SVFYRMLKCG----VWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFV 287
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
+P+ +YN++I F K + A R+ +V GV N +Y LVDA+ AL
Sbjct: 288 SPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALR 347
Query: 163 VIDEMVNAGFA 173
+ DEM + G
Sbjct: 348 LCDEMTSKGLV 358
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + +Y AL+ A+G+ + EA R+ + + S G+ N + Y+ +V D + A
Sbjct: 321 GVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGA 380
Query: 161 LSVIDEM 167
+SV+ +M
Sbjct: 381 MSVLRDM 387
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
F P + L++ C + E D+ E L P + N +I C + D DR
Sbjct: 491 FKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE--ITYNILIRSCCSTGDTDR 548
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+ + F + + GL+PD+++YNA I +F K++K +A + + ++ +G+KP+ +YS L+
Sbjct: 549 SVKLFAKMKEN-GLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLI 607
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
A + + A + + G P T +R V E+D
Sbjct: 608 KALSESGRESEAREMFSSIERHGCVPDSYT-----KRLVEELD 645
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI LD AY F+ + S G PD +YN LI+ K EA R+ + +
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSD-GCKPDRFTYNILIHGVCKKGVVDEAIRLVKQME 242
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
G +PN +Y++L+D L AL ++ M P++ T++
Sbjct: 243 QEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIR 289
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPL--VVACSRKGFETLDSVYFQLENLSRAEPPYK 68
LN + GD + + +S+Y V+ C K ++ F E R P
Sbjct: 401 LNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISP-- 458
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N + G + D+ + + E + G PD+ +++ +I + K+ +A
Sbjct: 459 NLVTFNTFLSGYSVRGDVKKVHGVLEKL-LVHGFKPDVITFSLIINCLCRAKEIKDAFDC 517
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
F+ ++ G++PN ++Y++L+ + + D ++ + +M G +P
Sbjct: 518 FKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSP 563
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P++ ++N + + + V E L+ G KP+ +++SL+++ ++ K A
Sbjct: 455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDA 514
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204
EM+ G P++ T + R C D + + ++ A K+
Sbjct: 515 FDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKE 558
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 26 EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA-EPPYKSVAAINCVILGCANIW 84
E + P +S + ++C KG + +++ +SR +P + + +L
Sbjct: 348 ERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFS 407
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ DR + +G GL ++SYNA+I K ++ A+ + G+ PN +++
Sbjct: 408 EGDRY---LKQMGVD-GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTF 463
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ + + D K V+++++ GF P
Sbjct: 464 NTFLSGYSVRGDVKKVHGVLEKLLVHGFKP 493
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
Y+ + CV++G L + A S G+ P YNA+I A K A
Sbjct: 141 YRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAY 200
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + S G KP+ +Y++L+ A+ ++ +M G P+
Sbjct: 201 LKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPN 249
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
LI ++G+L + VF + LG+KP+ Y+ ++DA + + A +M +
Sbjct: 150 VLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSD 209
Query: 171 GFAPSKETLKKVRR------------RCVREMDEESN 195
G P + T + R V++M++E N
Sbjct: 210 GCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGN 246
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N +I G L+ A F + +S G+TPD+++YN+LI G EA +++
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
+ G++PN +++ L+ + + + A +V MV GF+P+ T +++ R
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++H+YN LI ++ + +A +F ++ SLGVKP A +Y + +D + + D +A
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452
Query: 161 LSVIDEMVNAGFAPS 175
L ++M G AP+
Sbjct: 453 LETFEKMKTKGIAPN 467
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P + Y +++ C K E +++ E + P V +N +I +D A+
Sbjct: 501 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP--DVIVVNSLINTLYKADRVDEAW 558
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ F + L P + +YN L+ GK K EA +FE +V G PN ++++ L D
Sbjct: 559 KMFMRM-KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 617
Query: 151 HLTNRDQKAALSVIDEMVNAGFAP 174
N + AL ++ +M++ G P
Sbjct: 618 LCKNDEVTLALKMLFKMMDMGCVP 641
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N VI G ++D A + + S +P +Y LI K + +EA ++FE ++
Sbjct: 859 NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGML 918
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G +PN Y++L++ + AA ++ MV G P +T
Sbjct: 919 DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + L A Q FE + +G P+ YN LI FGK + A +F+ +V
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 955
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
GV+P+ +YS+LVD L E+ +G P
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG + +SYN LI+ K + EA V+ ++ G +P+ +YS L+ RD +
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 160 ALSVIDEMVNAGFAPSKET 178
+ ++ EM G P+ T
Sbjct: 242 VMGLLKEMETLGLKPNVYT 260
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 27 EIFSPFTSLYP--LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E F P Y +V R+ +++ + ++E L Y I +LG A
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR--VLGRAG-- 272
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++ AY+ + + G PD+ +Y LI A +K A VFE + + KP+ ++Y
Sbjct: 273 KINEAYEILKRMDDE-GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D NRD + EM G P
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 29 FSPFTSLY-PLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD 85
FSP Y PL+ S+ G +E L+ R + A N +I G +
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP-----NCAIYNILINGFGKAGE 941
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
D A F+ + G+ PD+ +Y+ L+ + + E F+ L G+ P+ + Y+
Sbjct: 942 ADAACALFKRMVKE-GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 146 LLVDAHLTNRDQKAALSVIDEM-VNAGFAP 174
L+++ + + AL + +EM + G P
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+TLD + R + ++ N +I G + LD A + F + S G+ P
Sbjct: 383 FDTLD--------VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM-ESLGVKPTA 433
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-LVDAHLTNRDQKAALSVID 165
++Y I +GK + A FE + + G+ PN ++ + L RD++A +
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK-QIFY 492
Query: 166 EMVNAGFAPSKETLKKVRRRC---VREMDE 192
+ + G P T + +C V E+DE
Sbjct: 493 GLKDIGLVPDSVTY-NMMMKCYSKVGEIDE 521
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +YN L+ A+GK K E +++ + + + N +++++++ + +
Sbjct: 813 STGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVD 872
Query: 159 AALSV-IDEMVNAGFAPSKET 178
AL + D M + F+P+ T
Sbjct: 873 DALDLYYDLMSDRDFSPTACT 893
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DLD Q + + G PD+ ++ L+ A K EA + + G+ PN +Y
Sbjct: 343 DLDSVKQFWSEMEKD-GHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTY 401
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ L+ L AL + M + G P+ T
Sbjct: 402 NTLICGLLRVHRLDDALELFGNMESLGVKPTAYT 435
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
YQ +A GL+PD +Y+ +I GK A ++F +V G PN ++Y++++D
Sbjct: 457 YQRMQA----GGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H R+ + AL + +M NAGF P K T
Sbjct: 513 LHAKARNYQNALKLYRDMQNAGFEPDKVT 541
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G KP+ ++Y L+D H A
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 161 LSVIDEMVNAGFAP 174
+ + M G +P
Sbjct: 454 MDMYQRMQAGGLSP 467
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++++A+Q ++A+ + GL P++ + N+L+ F ++ K EA + +++++LG++P+ +Y
Sbjct: 589 NVEKAWQWYQAMLHA-GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 647
Query: 145 SLLVDAHLTNRDQ 157
+LL+ R +
Sbjct: 648 TLLLSCCTDGRSK 660
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ +++ + +V G +PN ++Y+ L+ ++ A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 419 MNVFNQMQEAGCKPDRVT 436
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD Y L+ +GK +A + ++ ++ G++PN + + L+ L A +
Sbjct: 572 PDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYEL 631
Query: 164 IDEMVNAGFAPSKET 178
+ M+ G PS +T
Sbjct: 632 LQNMLALGLRPSLQT 646
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 27 EIFSPFTSLYPLVV-ACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
E SP Y V+ AC+R G +E L ++ ++ R E + N ++ CA
Sbjct: 205 EKISPSILTYNTVINACARGGLDWEGLLGLFAEM----RHEGIQPDIVTYNTLLSACAIR 260
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D A F + G+ PD+ +Y+ L+ FGKL++ + + + S G P+ S
Sbjct: 261 GLGDEAEMVFRTMNDG-GIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
Y++L++A+ + K A+ V +M AG P+ T
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANT 354
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D R+ + F+ + P+ H Y +I G+ + VF+ + S GV + SY
Sbjct: 120 DWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSY 179
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
+ L++A+ N + +L ++D M N +PS T V C R
Sbjct: 180 TALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACAR 223
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
+S G PDI SYN L+ A+ K EA VF + + G PNA +YS+L++
Sbjct: 309 ASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP+ ++Y+ L+ FG+ + + ++F + S P+A +Y++L++ K
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRC 186
+++ +MV P ET + + C
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFAC 432
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +Y +I+A GK +A ++ +++ + + P++ +Y+ +++A + AL
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
+ M G PS ET +
Sbjct: 478 VAFNTMHEVGSNPSIETFHSL 498
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
Query: 25 MEEIFSPFTSLYP-LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI 83
+EE P Y ++ AC + G Q + P K+ + A
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALY 473
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
+ A+ T VGS+ P I ++++L+Y+F + E+ + LV G+ N +
Sbjct: 474 EEALVAFNTMHEVGSN----PSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
++ ++A+ + A+ +M + P + TL+ V
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+ N +I G N +D A+ F ++ S G+ PD+ +YN +I K EA +
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
F + G P+ +Y++L+ AHL +++ +I+EM GF+ T+K V
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMV 601
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L A Q F+ + S G PDI +Y+ LI ++ K K+ + R+F + S G+ PN ++Y+
Sbjct: 366 LHEANQMFDLMVSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
LV + AA + EMV+ G PS T
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + F + SS GL P+ +YN L+ F + K A +F+ +VS GV P+ ++Y
Sbjct: 401 VDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Query: 146 LLVDAHLTNRDQKAALSVIDEM 167
+L+D N + AL + ++M
Sbjct: 460 ILLDGLCDNGELNKALEIFEKM 481
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN+LI F K EA+++F+ +VS G +P+ ++YS+L++++ +
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404
Query: 161 LSVIDEMVNAGFAPSKET 178
+ + E+ + G P+ T
Sbjct: 405 MRLFREISSKGLIPNTIT 422
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
WD D A E +G + + PD+ +++ALI F K K EA ++ +++ G+ P+ ++
Sbjct: 296 WD-DGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
Y+ L+D A + D MV+ G P
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 93 FEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
F +G ++ G PD +++ L+ F + EA + + +V + +P+ ++ S L++
Sbjct: 125 FSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLING 184
Query: 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185
AL +ID MV GF P + T V R
Sbjct: 185 LCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ +Y++LI K + +++ ++ + P+ +++S L+D + A
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM+ G AP T
Sbjct: 335 KELYNEMITRGIAPDTIT 352
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P + N +I G LD A + +S+G+ PD+ +YN+LIY + K A
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
V + + G KPN SY++LVD A +V++EM G P+
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+++SY L+ F KL K EA V + + G+KPN + ++ L+ A A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ + EM G P T +
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSL 500
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+D Y L +S A+ + NC+I + A + F + G PD++++
Sbjct: 440 IDEAYNVLNEMS-ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKPDVYTF 497
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N+LI ++ + A + ++S GV N ++Y+ L++A L + K A +++EMV
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557
Query: 170 AG 171
G
Sbjct: 558 QG 559
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPDI ++N+LI + + + +F L + G+ P+ ++++ L+ A
Sbjct: 629 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Query: 161 LSVIDEMVNAGFAPSKET 178
++DE + GF P+ T
Sbjct: 689 CLLLDEGIEDGFVPNHRT 706
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 53 VYFQLENLSRAEPPYKSVAAI-------NCVILGCANIWDLDRAYQTFEAVGSSFGLTPD 105
+ ++ N+ EP +KS + NC + +D+ S + P
Sbjct: 168 LMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM-----------LSRKIPPT 216
Query: 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165
+ ++ ++ AF + + A + + G PN++ Y L+ + AL +++
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276
Query: 166 EMVNAGFAPSKETLKKV 182
EM G P ET V
Sbjct: 277 EMFLMGCVPDAETFNDV 293
>sp|Q9SNB7|PP264_ARATH Pentatricopeptide repeat-containing protein At3g46610
OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1
Length = 665
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V++ C+ + A Q F+A+ + G P + SY AL+ A K K EA RV+ H++
Sbjct: 462 NAVLVACSKASETTAAIQIFKAMVDN-GEKPTVISYGALLSALEKGKLYDEAFRVWNHMI 520
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAAL--SVIDEMVNAGFAPSKETLKKVRRRCVREMD 191
+G++PN +Y+ + A + QK L +++ EM + G PS T V C R
Sbjct: 521 KVGIEPNLYAYTTM--ASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCAR--- 575
Query: 192 EESNDRVEALAKKFDIRMNTEN 213
+ + +A ++ RM +EN
Sbjct: 576 ----NGLSGVAYEWFHRMKSEN 593
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P +NA++ A K +T A ++F+ +V G KP +SY L+ A + A
Sbjct: 453 GLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEA 512
Query: 161 LSVIDEMVNAGFAPS 175
V + M+ G P+
Sbjct: 513 FRVWNHMIKVGIEPN 527
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL-------LVDAHLTNRDQKAALS 162
N LI+ GK KK + A ++E L+ G +PN +SY L L+ A + +
Sbjct: 385 NHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVR 444
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVR 188
++++M + G P + V C +
Sbjct: 445 LLNKMEDKGLKPQRRHWNAVLVACSK 470
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P++ YN+L+ G ++ EA ++ + + G+ PN ++Y+ L+ ++ + AL
Sbjct: 183 IGPNLFIYNSLL---GAMRGFGEAEKILKDMEEEGIVPNIVTYNTLMVIYMEEGEFLKAL 239
Query: 162 SVIDEMVNAGFAPSKET 178
++D GF P+ T
Sbjct: 240 GILDLTKEKGFEPNPIT 256
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ P + ++NA+I + + A F + S V+PN ++Y +L++A +
Sbjct: 555 ASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKP 614
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A + + N G S
Sbjct: 615 RLAYELHVKAQNEGLKLS 632
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
+SV ++N ++ D + F+ SFG+TP+I + N L+ A K A +
Sbjct: 153 RSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYK 212
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V + + S+G+ PN ++Y+ ++ ++ D ++A V++EM++ G+ P T
Sbjct: 213 VLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATT 263
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + +YN LI + + EA R+++ + KPNA +Y++L++ N + K
Sbjct: 395 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454
Query: 161 LSVIDEMVNAGFAPSKET 178
+ V++EM+ G P+K T
Sbjct: 455 VRVLEEMLEIGCFPNKTT 472
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ AY+ + + S GL P++ +Y ++ + A RV E ++ G P+A +Y
Sbjct: 206 DIESAYKVLDEI-PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTY 264
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
++L+D + A +V+D+M P++ T + R +E
Sbjct: 265 TVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKE 309
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A + E + G PD +Y L+ + KL + EA+ V + + ++PN ++Y
Sbjct: 241 DMESAKRVLEEMLDR-GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTY 299
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+++ A + A ++ DEM+ F P KV
Sbjct: 300 GVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKV 337
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P+ +YN LI K E RV E ++ +G PN ++ +L + ++ A+ +
Sbjct: 433 PNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKI 492
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+ V G KE+ + ++ E+D+
Sbjct: 493 VSMAVMNGKV-DKESWELFLKKFAGELDK 520
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S AA++ ++ G ++ A + V FG++P++ YNALI + K +K EA +
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRV-VDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
F+ + +G++PN ++YS+L+D ALS + EMV+ G S
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS 436
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSV 70
+F+ A+G + + E P Y V+ + GF + E L P SV
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN------EAEVLCSKMQPVSSV 749
Query: 71 AAINCVILGC------ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE 124
N V GC D+ +A + A+ GL + +YN LI F + + E
Sbjct: 750 P--NQVTYGCFLDILTKGEVDMQKAVELHNAILK--GLLANTATYNMLIRGFCRQGRIEE 805
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
AS + ++ GV P+ ++Y+ +++ D K A+ + + M G P + +
Sbjct: 806 ASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865
Query: 185 RCV--REMDEESNDRVEAL 201
C EM + + R E L
Sbjct: 866 GCCVAGEMGKATELRNEML 884
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 76 VILGCANIWDLDRAYQT---FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
VI + DL RA + EA G + P YN LI K +K +EA + + L
Sbjct: 233 VIRSLCELKDLSRAKEMIAHMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDL 288
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+KP+ ++Y LV ++ + L ++DEM+ F+PS+
Sbjct: 289 AGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSE 332
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P I+++ L+ + +A ++F + VKPN ++Y+++++ + D A
Sbjct: 502 GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKA 561
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
+ EM G P + + + C+ E+ V+ L K
Sbjct: 562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK 605
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y L++ F + K EA V + +V GV + + Y +L+D L ++D+K ++ EM
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 169 NAGFAP 174
+ G P
Sbjct: 675 DRGLKP 680
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 56 QLENLSRAEPPYKSVAAINC---VILGCANIWDLDRAYQTFEAVG-----SSFGLTPDIH 107
+L++LSRA+ + A C ++ I L + + +EAVG + L PD+
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+Y L+Y K+++ + + ++ L P+ + S LV+ + AL+++ +
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 168 VNAGFAPS 175
V+ G +P+
Sbjct: 359 VDFGVSPN 366
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD +Y +I + +A ++ + G++P+ ++Y+ L+ + A
Sbjct: 817 GVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKA 876
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +EM+ G P+ +T
Sbjct: 877 TELRNEMLRQGLIPNNKT 894
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D+ Y LI K K + + + G+KP+ + Y+ ++DA D K A
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ D M+N G P++ T V
Sbjct: 702 FGIWDLMINEGCVPNEVTYTAV 723
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
F+ + + L P++ + +AL++ K + A +F +VS+G++P+ Y+ ++ +
Sbjct: 178 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSL 237
Query: 152 LTNRDQKAALSVIDEMVNAG 171
+D A +I M G
Sbjct: 238 CELKDLSRAKEMIAHMEATG 257
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ PD+ +YN +I K EA +F
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSEADLLF 550
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G PN +Y++L+ AHL D + +I+E+ GF+ T+K V
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMV 603
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +++ALI F K K EA + + ++ G+ P+ ++Y+ L+D A
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372
Query: 162 SVIDEMVNAGFAPSKET 178
++D MV+ G P+ T
Sbjct: 373 HMLDLMVSKGCGPNIRT 389
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 22 IIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
+ID +FS V K ++ + + Q+E A Y INC C
Sbjct: 72 LIDFSRLFS---------VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINC----CC 118
Query: 82 NIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
L A F A+G G PD +++ LI + EA + + +V +G KP
Sbjct: 119 RCRKLSLA---FSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ + LV+ N A+ +ID MV GF P++ T
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D + F + S G+ D +YN LI F +L K A +F+ +VS V+P+ +SY
Sbjct: 403 IDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461
Query: 146 LLVDAHLTNRDQKAALSVIDEM 167
+L+D N + + AL + +++
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKI 483
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G DI Y LI F + + +++ ++
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIK-GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ P+ +++S L+D + + A + EM+ G +P T
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVT 354
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G++PD +Y +LI F K + +A+ + + +VS G PN ++++L++ +
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGY 397
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PD +Y+ +I GK A R+F +V G PN +++++++ H R+ + A
Sbjct: 459 GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Query: 161 LSVIDEMVNAGFAPSKET 178
L + +M NAGF P K T
Sbjct: 519 LKLYRDMQNAGFQPDKVT 536
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D H+Y ++ G+ K+ E +++ + +V G KPN ++Y+ L+ ++ K A
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413
Query: 161 LSVIDEMVNAGFAPSKET 178
++V ++M AG P + T
Sbjct: 414 MNVFNQMQEAGCEPDRVT 431
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ +YN LI+++G+ EA VF + G +P+ ++Y L+D H A
Sbjct: 389 GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA 448
Query: 161 LSVIDEMVNAGFAP 174
+ + M AG +P
Sbjct: 449 MDMYQRMQEAGLSP 462
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D+A+Q ++A+ + GL P++ + N+L+ F ++ + EA + + +++LG+ P+ +Y
Sbjct: 584 NVDKAWQWYQAMLQA-GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTY 642
Query: 145 SLLV 148
+LL+
Sbjct: 643 TLLL 646
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
PD Y L+ +GK +A + ++ ++ G++PN + + L+ L A ++
Sbjct: 567 PDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNL 626
Query: 164 IDEMVNAGFAPSKET 178
+ M+ G PS +T
Sbjct: 627 LQSMLALGLHPSLQT 641
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + +LDR F+ V G +P +YN LI F KL + EAS +FE ++
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
GV+PN +Y+ L+D K AL +++ M+ P+ T
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R SV NC++ LD+A++ FE + PD+ S+N +I K
Sbjct: 521 RVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGD 579
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
A + + G+ P+ +YS L++ L A+S D+MV++GF P
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639
Query: 182 VRRRCVREMDEESNDRVEALAKKF---DIRMNTE 212
V + C+ + + D++ L KK DI ++ E
Sbjct: 640 VLKYCISQGE---TDKLTELVKKLVDKDIVLDKE 670
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+LD + E + R + + V + N +I G D+ A + S GL+PD+ +
Sbjct: 544 SLDQAWRLFEEMQR-DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM-SRAGLSPDLFT 601
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
Y+ LI F KL EA F+ +V G +P+A
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L PD+ SYN +I F + K+ +A + + G + +++ +L+DA A+
Sbjct: 173 LMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAM 232
Query: 162 SVIDEMVNAGF 172
+ EM G
Sbjct: 233 GFLKEMKFMGL 243
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 76 VILG--CANIWDLDRAYQTFEAVGSSFGLT-PDIHSYNALIYAFGKLKKTFEASRVFEHL 132
++LG CA DLD A + + T PD+ SYNALI+ K + +A +++ L
Sbjct: 392 ILLGGLCAK-GDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLL 450
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V + ++ ++L+++ L D A+ + ++ ++ + +T
Sbjct: 451 VEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDT 496
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GCA D+++A+ + + G+ P+I +YNALI KL A R+ L
Sbjct: 761 LIHGCAIAGDINKAFTLRDEMALK-GIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQK 819
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173
G+ PNA++Y+ L+D + + + A+ + ++M+ G
Sbjct: 820 GITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLV 857
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L A Q F + + + L PD H+YN L+ + + EA ++ + +
Sbjct: 370 NSLINGYCKSGQLVEAEQIFSRM-NDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMC 428
Query: 134 SLGVKPNAMSYSLLVDAH 151
V P M+Y++L+ +
Sbjct: 429 QKEVVPTVMTYNILLKGY 446
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G A I D++ + + S G++ ++ +Y +LI + K EA V
Sbjct: 260 NVVTYNSLINGYAMIGDVEGMTRVLRLM-SERGVSRNVVTYTSLIKGYCKKGLMEEAEHV 318
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
FE L + + Y +L+D + + A+ V D M+ G
Sbjct: 319 FELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ + N+LI + K + EA ++F + +KP+ +Y+ LVD +
Sbjct: 360 IGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDE 419
Query: 160 ALSVIDEMVNAGFAPSKET 178
AL + D+M P+ T
Sbjct: 420 ALKLCDQMCQKEVVPTVMT 438
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++ N +I G + ++DRA + + G+TP+ +YN LI K EA R+
Sbjct: 789 NIVTYNALIKGLCKLGNVDRAQRLLHKLPQK-GITPNAITYNTLIDGLVKSGNVAEAMRL 847
Query: 129 FEHLVSLGV 137
E ++ G+
Sbjct: 848 KEKMIEKGL 856
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
++D+A + SS GL ++ +YN+LI + + +RV + GV N ++Y
Sbjct: 240 NVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTY 299
Query: 145 SLLVDAH 151
+ L+ +
Sbjct: 300 TSLIKGY 306
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
++V +I G ++ A FE + L D H Y L+ + + + +A R
Sbjct: 294 RNVVTYTSLIKGYCKKGLMEEAEHVFELLKEK-KLVADQHMYGVLMDGYCRTGQIRDAVR 352
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V ++++ +GV+ N + L++ + + A + M + P T
Sbjct: 353 VHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHT 403
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 44 RKG-FETLDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
+KG F+T V Q+ EN A+ +A N +I G + D A + + G
Sbjct: 642 KKGYFQTARGVLDQMFENFCAAD-----IATYNVIIQGLGKMGRADLASAVLDRLTKQGG 696
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
DI YN LI A GK + EA+++F+H+ S G+ P+ +SY+ +++ + K A
Sbjct: 697 YL-DIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAY 755
Query: 162 SVIDEMVNAGFAPSKET 178
+ M++AG P+ T
Sbjct: 756 KYLKAMLDAGCLPNHVT 772
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC + +D A + + + + G PD YN L+ K +K EA ++FE +V
Sbjct: 330 LIQGCCKSYRMDDAMRIYGEMQYN-GFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQE 388
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
GV+ + +Y++L+D N +A ++ ++ G
Sbjct: 389 GVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKG 424
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 74 NCVILGCANIWDLDRAYQTFEAV-------GSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
N I G DLD A F+ + GSSFG PDI +YN+LI+ K +A
Sbjct: 252 NICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFG--PDICTYNSLIHVLCLFGKAKDAL 309
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
V++ L G +P+ +Y +L+ + A+ + EM GF P
Sbjct: 310 IVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVP 357
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ SYN ++ F ++KK EA+ +FE + G P+ +SY ++ D + A
Sbjct: 323 GLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEA 382
Query: 161 LSVIDEMVNAGFAPSKETLK 180
++DEM+ G+ P ++ L+
Sbjct: 383 AVILDEMLFKGYKPRRDRLE 402
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164
D Y+ LI + K ++ E S + E + G KP+ ++Y++L++ D ++A V+
Sbjct: 257 DAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVL 316
Query: 165 DEMVNAGFAP 174
DEMV G P
Sbjct: 317 DEMVEKGLKP 326
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G PD +YN LI F + A+RV + +V G+KP+ +SY++++ +
Sbjct: 285 SEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKW 344
Query: 158 KAALSVIDEMVNAGFAP 174
+ A + ++M G +P
Sbjct: 345 EEATYLFEDMPRRGCSP 361
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG PD +YN LI+ + +A ++F+ +V VKP +++ L+ + K
Sbjct: 147 FG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKE 205
Query: 160 ALSVIDEMVNA-GFAPS 175
AL + +M+ G P+
Sbjct: 206 ALKMKHDMLKVYGVRPT 222
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ L + + V A +I G +D A + F + S GLT + +Y LI
Sbjct: 303 QMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQG 361
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA---GF 172
FG++ K A VF H+VS GV PN +Y++L+ N K AL + ++M G
Sbjct: 362 FGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGV 421
Query: 173 APSKET 178
AP+ T
Sbjct: 422 APNIWT 427
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PDI ++ +LI F + EA + +V +G+KP+ + Y+ ++D+ N
Sbjct: 136 LGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY 195
Query: 160 ALSVIDEMVNAGFAP 174
ALS+ D+M N G P
Sbjct: 196 ALSLFDQMENYGIRP 210
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 51 DSVYFQLENLSRAEPPYKSVAAINCVIL-GCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109
+ +Y ++ +S A + + IN + GC +D A Q F + + G PD+ +Y
Sbjct: 267 EELYNEMIRMSIAPNIFTYTSLINGFCMEGC-----VDEARQMFYLMETK-GCFPDVVAY 320
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
+LI F K KK +A ++F + G+ N ++Y+ L+ A V MV+
Sbjct: 321 TSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVS 380
Query: 170 AGFAPSKET 178
G P+ T
Sbjct: 381 RGVPPNIRT 389
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
+ PD+ ++NALI AF K K +A ++ ++ + + PN +Y+ L++
Sbjct: 243 IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
++G+ PD+ Y +L+ + +A + + +KP+ ++++ L+DA +
Sbjct: 205 NYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFL 264
Query: 159 AALSVIDEMVNAGFAPS 175
A + +EM+ AP+
Sbjct: 265 DAEELYNEMIRMSIAPN 281
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ Y +I + K A +F+ + + G++P+ + Y+ LV+ + + A
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 231
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
S++ M P T + V+E
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKE 260
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I + L+ K+KK + +HL +GV + + +LL++ + A S
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129
Query: 164 IDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK---KFDIRMNT 211
+ +M+ GF P T + C+ EE+ V + + K D+ M T
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYT 181
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 53 VYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112
V F+ S+ EP ++ N +I G ++ + F + S G+ PD+ +YN +
Sbjct: 487 VVFEYLQRSKMEP---TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTM 542
Query: 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172
I F + EA +F+ + G PN+ Y+ L+ A L + D++A+ +I EM + GF
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Query: 173 APSKETLKKV 182
A T+ V
Sbjct: 603 AGDASTIGLV 612
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A Q FE + S PD+ +YN LI F K K+ E VF + G+ N ++Y+
Sbjct: 377 LDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+L+ D A + EMV+ G P+ T
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E +S PP ++ N ++ G L++A FE + S + P I++YN +I
Sbjct: 456 EMVSDGVPP--NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMC 512
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
K K + +F +L GVKP+ ++Y+ ++ ++ A ++ EM G P+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 178 TLKKVRRRCVREMDEESN 195
+ R +R+ D E++
Sbjct: 573 CYNTLIRARLRDGDREAS 590
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
+ EP V N +I G +D A F+ + + G+ P++ +Y++LI
Sbjct: 250 GKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYG 305
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180
+ +ASR+ ++ + P+ ++S L+DA + A + DEMV PS T
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYS 365
Query: 181 K-VRRRCVREMDEESNDRVEALAKK 204
+ C+ + +E+ E + K
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSK 390
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ V N +I G ++ + F + S GL + +YN LI + A
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREM-SQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+F+ +VS GV PN M+Y+ L+D N + A+ V + + + P+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106
F+ + S+ Q++NL Y INC L A + G P+I
Sbjct: 97 FDVVISLGEQMQNLGIPHNHYTYSILINCF----CRRSQLPLALAVLGKM-MKLGYEPNI 151
Query: 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166
+ ++L+ + K+ EA + + + G +PN ++++ L+ + A+++ID
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 211
Query: 167 MVNAGFAP 174
MV G P
Sbjct: 212 MVAKGCQP 219
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P+ S+ + ++ A + D E + + G+ + ++Y+ LI F + + A
Sbjct: 77 PFPSIIEFSKLLSAIAKMNKFDVVISLGEQM-QNLGIPHNHYTYSILINCFCRRSQLPLA 135
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
V ++ LG +PN ++ S L++ + ++ A++++D+M G+ P+ T
Sbjct: 136 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P I ++ L+ A K+ K + E + +LG+ N +YS+L++ AL+V
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 164 IDEMVNAGFAPSKETL 179
+ +M+ G+ P+ TL
Sbjct: 139 LGKMMKLGYEPNIVTL 154
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ PD+ +++ALI AF K K EA ++++ +V + P+ ++YS L++ + A
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381
Query: 162 SVIDEMVNAGFAP 174
+ + MV+ P
Sbjct: 382 QMFEFMVSKHCFP 394
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ P I +Y++LI F + EA ++FE +VS P+ ++Y+ L+ + + +
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 162 SVIDEMVNAGFAPSKET 178
V EM G + T
Sbjct: 417 EVFREMSQRGLVGNTVT 433
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
V+ G D D A+ + L P + YN +I K K +A +F+ + +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G++PN ++YS L+ A ++ +M+ P
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N +I G N +D A+ F ++ G+ P + +YN +I K EA +F
Sbjct: 508 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G P+ +Y++L+ AHL + D ++ +I+E+ GF+ T+K V
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMV 619
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
Q+ +L ++ ++ N +I G +D + F + S G+ D +YN LI
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQG 447
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
F +L K A +F+ +VS V PN ++Y +L+D N + + AL + +++
Sbjct: 448 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G LD A+ F + G+T +I +YN LI F + + +++ ++
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ PN +++S+L+D+ + + A + EM++ G AP T
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 21 SIIDMEEIFSPF--TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVIL 78
++ID +FS T Y LV+A + Q+E A Y INC
Sbjct: 87 TVIDFSRLFSAIAKTKQYDLVLALCK-----------QMELKGIAHNLYTLSIMINC--- 132
Query: 79 GCANIWDLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+ F A+G G P+ +++ LI + EA + + +V +G
Sbjct: 133 ----FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
KP+ ++ + LV+ + + A+ +ID+MV G P+ T
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ ++++ + +I F + +K A ++ LG +PN +++S L++ A
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 161 LSVIDEMVNAGFAPSKETL 179
L ++D MV G P T+
Sbjct: 178 LELVDRMVEMGHKPDLITI 196
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
G+ PD +Y +LI F K +A+++ + +VS G PN ++++L++ +
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G PD+ + N L+ K EA + + +V G +PNA++Y +++ +
Sbjct: 187 MGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 160 ALSVIDEM 167
A+ ++ +M
Sbjct: 247 AMELLRKM 254
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
I DL A + F+ + S G+ PD Y ALI K+ EA +F+ ++ GVKP+
Sbjct: 772 CKIGDLGEAKRIFDQMIES-GVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPD 830
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ Y+ L+ N A+ ++ EM+ G P+K +L V
Sbjct: 831 VVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAV 872
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+F + PD+ Y LI K+ EA R+F+ ++ GV P+A Y+ L+ K
Sbjct: 754 AFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLK 813
Query: 159 AALSVIDEMVNAGFAP 174
A + D M+ +G P
Sbjct: 814 EAKMIFDRMIESGVKP 829
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 73 INCVI----LGC-ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
INCVI L C + + AY F+ + ++ D YN A GKL K EA
Sbjct: 359 INCVIVSSILQCYCQMGNFSEAYDLFKEFRET-NISLDRVCYNVAFDALGKLGKVEEAIE 417
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F + G+ P+ ++Y+ L+ A ++ EM G P
Sbjct: 418 LFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTP 464
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A + FE + + + PD+ +Y +I + +L + +A +FE + VKP+ ++YS+L
Sbjct: 618 KAREFFEILVTK-KIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVL 676
Query: 148 V--DAHLTNRDQKAALSVIDEMV 168
+ D L + + A VI ++V
Sbjct: 677 LNSDPELDMKREMEAFDVIPDVV 699
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
DL + Y F+ + + PD+ +Y L+ K K SR + + VKP+ Y
Sbjct: 713 DLKKVYALFKDMKRR-EIVPDVVTYTVLL----KNKPERNLSR---EMKAFDVKPDVFYY 764
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++L+D D A + D+M+ +G P
Sbjct: 765 TVLIDWQCKIGDLGEAKRIFDQMIESGVDP 794
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I GC+N DL+ A+ + + G+ P ++YN LI+ K A + +
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQ-GMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-----RRRCVR 188
G+ ++++Y++L++ + + D K A ++ DEM+ G P++ T + R+ R
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449
Query: 189 EMDEESNDRVEALAKKFDIRMNT 211
E DE V K + MNT
Sbjct: 450 EADELFEKVVGKGMKPDLVMMNT 472
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
GD ++AF +E T D I + FT + V C + D ++ ++ +
Sbjct: 411 GDAKKAFALHDEMMT---DGIQPTQ-----FTYTSLIYVLCRKNKTREADELFEKV--VG 460
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ P + +N ++ G I ++DRA+ + + + PD +YN L+ K
Sbjct: 461 KGMKP--DLVMMNTLMDGHCAIGNMDRAFSLLKEM-DMMSINPDDVTYNCLMRGLCGEGK 517
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA + + G+KP+ +SY+ L+ + D K A V DEM++ GF P+
Sbjct: 518 FEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G D +A+ + + + G+ P +Y +LIY + KT EA +FE +V
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTD-GIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM----VN----------------AGFA 173
G+KP+ + + L+D H + A S++ EM +N F
Sbjct: 460 GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFE 519
Query: 174 PSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
++E + +++RR ++ N + +KK D +
Sbjct: 520 EARELMGEMKRRGIKPDHISYNTLISGYSKKGDTK 554
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
NC++ G + A + + G+ PD SYN LI + K T A V + ++
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRR-GIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
SLG P ++Y+ L+ N++ + A ++ EM + G P+ + V
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSV 613
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G PD+ +YN ++ + AS V + +G+ P+++SY++L+ N D +
Sbjct: 288 SKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLE 344
Query: 159 AALSVIDEMVNAGFAPS 175
A + DEMV G P+
Sbjct: 345 MAFAYRDEMVKQGMVPT 361
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 11/171 (6%)
Query: 12 NEFETAYGDSIIDMEEIFSPFTSLYPLVVACS---RKGFETLDSVYFQLENLSRAEPPYK 68
N + + ++ + + + T L+ L+V C R E ++ Y L + + Y
Sbjct: 134 NSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFY-----LMKEKGFYP 188
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
N ++ + + ++ A+ F A + +++++N +I K K +A
Sbjct: 189 KTETCNHILTLLSRLNRIENAW-VFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGF 247
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ G+KP ++Y+ LV L R + A L +I EM + GF P +T
Sbjct: 248 LGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARL-IISEMKSKGFQPDMQT 297
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + D A+ + + S G P + +YNAL+ K ++ A + +
Sbjct: 541 NTLISGYSKKGDTKHAFMVRDEM-LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMK 599
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAA 160
S G+ PN S+ +++A ++N D K +
Sbjct: 600 SEGIVPNDSSFCSVIEA-MSNLDAKKS 625
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD+ +YN++++ F + + EA V ++ GV P+ +Y+ +++ ++ + A
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
Query: 161 LSVIDEMVNAGFAP 174
+ DEM+ GF+P
Sbjct: 712 FRIHDEMLQRGFSP 725
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG 101
C RK D ++ ++ RA P I +I G + +L A + F+ +
Sbjct: 456 CKRKMLGEADKLFNEMT--ERALFPDSYTLTI--LIDGHCKLGNLQNAMELFQKMKEK-R 510
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+ D+ +YN L+ FGK+ A ++ +VS + P +SYS+LV+A + A
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 162 SVIDEMVNAGFAPS 175
V DEM++ P+
Sbjct: 571 RVWDEMISKNIKPT 584
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V N ++ G + D+D A + + + S + P SY+ L+ A EA RV+
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNALCSKGHLAEAFRVW 573
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ ++S +KP M + ++ + + + S +++M++ GF P
Sbjct: 574 DEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI +YN LI A+ EA + + G P +Y+ +++ + + A
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207
V EM+ +G +P T + + ++ D ++V + + D+
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDV 371
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 34 SLYPLVVACSRKGFETLDSVY---------FQLENLSRAEPPYKSVAAINCVILGCANIW 84
+YP +V + TL S Y F+L N + V N VI G
Sbjct: 265 GVYPDIVT-----YNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG 319
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+RA + F + S GL+PD +Y +L+ K E +VF + S V P+ + +
Sbjct: 320 KYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCF 378
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
S ++ + + AL + + AG P
Sbjct: 379 SSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D+ +YN +++ K K EA ++F + + P++ + ++L+D H + + A
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNA 499
Query: 161 LSVIDEM 167
+ + +M
Sbjct: 500 MELFQKM 506
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 48 ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH 107
E L+ ++ ++ PP V + VI G D D+AY T+ + G+ PD+
Sbjct: 176 EALELLHMMADDRGGGSPP--DVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVV 232
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN++I A K + +A V +V GV P+ M+Y+ ++ + ++ K A+ + +M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 168 VNAGFAP 174
+ G P
Sbjct: 293 RSDGVEP 299
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI + K EA ++ +VS+G+KPN ++YS L++ + +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 160 ALSVIDEMVNAGFAP 174
AL + EM ++G +P
Sbjct: 565 ALVLFKEMESSGVSP 579
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E L R P V N +I +D+A + + + G+ PD +YN++++ +
Sbjct: 221 EMLDRGILP--DVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177
+ EA + + S GV+P+ ++YSLL+D N A + D M G P
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 178 T 178
T
Sbjct: 338 T 338
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
+N++I + K + E+ ++FE +V +GVKPN ++Y+ L++ + A+ ++ MV
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 169 NAGFAPSKET 178
+ G P+ T
Sbjct: 539 SVGLKPNTVT 548
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 91 QTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
Q EA+G S G+ PD+ +Y+ L+ K + EA ++F+ + G+KP +Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ + T ++D MV G P
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD + ++ LI A+ K K +A VF + G+ PNA++Y ++ + + A
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 161 LSVIDEMVNAGFAPS 175
+ ++M++ G +P
Sbjct: 426 MLYFEQMIDEGLSPG 440
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY +I F K + +A + ++ G+ P+ ++Y+ ++ A + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V++ MV G P T +
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSI 272
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
+D+A F + GL P+ +Y A+I K + +A FE ++ G+ P + Y+
Sbjct: 387 VDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYN 445
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFA 173
L+ T + A +I EM++ G
Sbjct: 446 SLIHGLCTCNKWERAEELILEMLDRGIC 473
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G I ++ A F+ + SS G++PDI +YN ++ + ++T A ++ +
Sbjct: 552 LINGYCKISRMEDALVLFKEMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 610
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
G + +Y++++ N+ AL + +
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
G ++ +YN +++ K K T +A ++F++L + +K A ++++++DA L
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALL 662
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP++ +Y ALI+A+ K KK A+ +FE ++S G PN ++YS L+D H + A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607
Query: 161 LSVIDEMVNAGFAP 174
+ + M + P
Sbjct: 608 CQIFERMCGSKDVP 621
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D AY+ + + G P++ +Y A+I FG + K + E + S
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEK-GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
GV PN ++Y +L+D N A ++++EM + +KV
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 855
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
N ++ A+ FE + GL D+++Y ++ +F K +A + F + +G PN
Sbjct: 494 CNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++Y+ L+ A+L + A + + M++ G P+
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN 587
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ Y +I K+ KT EA ++ + + G +PN ++Y+ ++D + L +
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801
Query: 164 IDEMVNAGFAPSKETLKKVRRRCVR 188
++ M + G AP+ T + + C +
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCK 826
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 48/199 (24%)
Query: 27 EIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84
E F P T Y +++ C FE N RA +V + ++ GC N
Sbjct: 296 ENFVPDTVFYTKLISGLCEASLFEEA----MDFLNRMRATSCLPNVVTYSTLLCGCLNKK 351
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
L R + + G P +N+L++A+ A ++ + +V G P + Y
Sbjct: 352 QLGRCKRVLNMMMME-GCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY 410
Query: 145 SLLVDAHLTNRD----------QKA-------------------------------ALSV 163
++L+ + ++D +KA A SV
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470
Query: 164 IDEMVNAGFAPSKETLKKV 182
I EM+ GF P T KV
Sbjct: 471 IREMIGQGFIPDTSTYSKV 489
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + LD A Q + S G +++Y++LI + K+K+ AS+V ++
Sbjct: 680 LIDGLCKVGKLDEA-QEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 738
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
PN + Y+ ++D A ++ M G P+ T
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 781
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P+ Y+ALI K+ K EA V + G +YS L+D + + Q A
Sbjct: 669 GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 728
Query: 161 LSVIDEMVNAGFAPS 175
V+ +M+ AP+
Sbjct: 729 SKVLSKMLENSCAPN 743
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL------------- 135
A + FE + S G P+I +Y+ALI K + +A ++FE +
Sbjct: 572 ANELFETMLSE-GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQY 630
Query: 136 ---GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+PN ++Y L+D + + A ++D M G P++
Sbjct: 631 DDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ 674
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139
C N DLD AY F + ++ ++ +YN +I+AF + A ++F+ +V + P
Sbjct: 577 CKN-GDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGP 635
Query: 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESNDRV 198
+ +Y L+VD + + EM+ GF PS TL +V CV + E+ +
Sbjct: 636 DGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGII 695
Query: 199 EALAKK 204
+ +K
Sbjct: 696 HRMVQK 701
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 67 YKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
+ + N +I G + ++ A + + + + G+ PD+++YN+L+ K K +
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
++ +V G PN ++++L+++ R AL +++EM N P T
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I G +LD A + + G PD+ +YN LIY K K EA +V
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQ-GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV 313
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
+ G++P++ +Y+ L+ + + A ++ + V GF P + T + +
Sbjct: 314 NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD ++YN LI + K A R+ V G P+ +Y L+D + A
Sbjct: 316 GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375
Query: 161 LSVIDEMVNAGFAPS 175
L++ +E + G P+
Sbjct: 376 LALFNEALGKGIKPN 390
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ ++N L+ + + +K EA + E + + V P+A+++ L+D N D A
Sbjct: 526 GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGA 585
Query: 161 LSVIDEMVNA 170
++ +M A
Sbjct: 586 YTLFRKMEEA 595
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ +YN I + + A R+ L+ G KP+ ++Y+ L+ N + A
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Query: 161 LSVIDEMVNAGFAPSKET 178
+ +MVN G P T
Sbjct: 306 EVYLGKMVNEGLEPDSYT 323
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
F+ + EP S AI V++ + D+A++ + + G+TPD++S+ +
Sbjct: 99 FERMDFYDCEPTVFSYNAIMSVLV---DSGYFDQAHKVYMRMRDR-GITPDVYSFTIRMK 154
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+F K + A R+ ++ S G + N ++Y +V + + +M+ +G +
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSL 214
Query: 175 SKETLKKVRRRCVREMDEESNDRV 198
T K+ R ++ D + +++
Sbjct: 215 CLSTFNKLLRVLCKKGDVKECEKL 238
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KA 159
G PD +Y +LI +T A +F + G+KPN + Y+ L+ L+N+
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG-LSNQGMILE 409
Query: 160 ALSVIDEMVNAGFAPSKET 178
A + +EM G P +T
Sbjct: 410 AAQLANEMSEKGLIPEVQT 428
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 76 VILGCANIWDLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134
+I G + + +RA F EA+G G+ P++ YN LI EA+++ +
Sbjct: 362 LIDGLCHEGETNRALALFNEALGK--GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSE 419
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ P ++++LV+ A ++ M++ G+ P
Sbjct: 420 KGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENL 60
+GD +AF E+ T + +D++ IF+ L+ AC + G + S + +
Sbjct: 672 VGDTGKAF----EYFTRLQNEGLDVD-IFT----YEALLKACCKSG--RMQSALAVTKEM 720
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S P S N +I G A D+ A + + G+ PDIH+Y + I A K
Sbjct: 721 SARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAG 778
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
A++ E + +LGVKPN +Y+ L+ + ALS +EM G P K
Sbjct: 779 DMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDK 834
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
I C+ D++RA QT E + + G+ P+I +Y LI + + +A +E + ++G
Sbjct: 771 ISACSKAGDMNRATQTIEEM-EALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 829
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAA------LSVIDEMVNAGFAPSKETLKKVRRRCVREM 190
+KP+ Y L+ + L+ A +++ EMV AG T +C+ ++
Sbjct: 830 IKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW-SKCLCKI 888
Query: 191 DEESNDRVEALAKKF 205
+ + E L K F
Sbjct: 889 EASGGELTETLQKTF 903
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G TP + +Y LI + GK+ K E SRV + GVK N +YS++++ + +D
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMK---EEGVKHNLKTYSMMINGFVKLKDW 535
Query: 158 KAALSVIDEMVNAGFAP 174
A +V ++MV G P
Sbjct: 536 ANAFAVFEDMVKEGMKP 552
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I + ++DRA QT + + P ++ +I+ + K + VF+ +
Sbjct: 558 NNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMR 616
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182
G P +++ L++ + R + A+ ++DEM AG + ++ T K+
Sbjct: 617 RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 665
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
++ G A++ D +A++ F + + GL DI +Y AL+ A K + A V + + +
Sbjct: 665 IMQGYASVGDTGKAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 723
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD---- 191
+ N+ Y++L+D D A +I +M G P T C + D
Sbjct: 724 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783
Query: 192 EESNDRVEALAKKFDIRMNT 211
++ + +EAL K +I+ T
Sbjct: 784 TQTIEEMEALGVKPNIKTYT 803
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V C+I + + +A + + G+ ++ +Y+ +I F KLK A V
Sbjct: 483 TVVTYGCLINLYTKVGKISKALEVSRVMKEE-GVKHNLKTYSMMINGFVKLKDWANAFAV 541
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
FE +V G+KP+ + Y+ ++ A + A+ + EM P+ T
Sbjct: 542 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I G + D A+ FE + G+ PD+ YN +I AF + A + + + L
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKL 583
Query: 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+P ++ ++ + + D + +L V D M G P+ T
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTF 627
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
LD ++AV S+F P + ++ +G+ A FE + + G+ P +
Sbjct: 287 LDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
Y+ L+ A+ RD ALS + +M G S
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMS 378
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D+ RA +TFE + + G+TP Y +LI+A+ + EA + G++ + ++Y
Sbjct: 324 DMHRARETFERM-RARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTY 382
Query: 145 SLLVDA 150
S++V
Sbjct: 383 SVIVGG 388
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 29 FSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
+ PF Y ++ K ++ ++ VY Q+ L P V N ++ + +
Sbjct: 215 YRPFKHSYNAILNSLLGVKQYKLIEWVYKQM--LEDGFSP--DVLTYNILLWTNYRLGKM 270
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
DR + F+ + G +PD ++YN L++ GK K A H+ +G+ P+ + Y+
Sbjct: 271 DRFDRLFDEMARD-GFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTT 329
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+D + +A +DEMV AG P
Sbjct: 330 LIDGLSRAGNLEACKYFLDEMVKAGCRP 357
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ +C G V F P S AI +LG + Y+ E V
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGV-------KQYKLIEWVY 242
Query: 98 SSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154
G +PD+ +YN L++ +L K R+F+ + G P++ +Y++L+ H+
Sbjct: 243 KQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILL--HILG 300
Query: 155 RDQK--AALSVIDEMVNAGFAPS 175
+ K AAL+ ++ M G PS
Sbjct: 301 KGNKPLAALTTLNHMKEVGIDPS 323
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVG 97
L+ SR G L++ + L+ + +A V +I G +LD+A + F +
Sbjct: 330 LIDGLSRAG--NLEACKYFLDEMVKAGCR-PDVVCYTVMITGYVVSGELDKAKEMFREMT 386
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G P++ +YN++I + EA + + + S G PN + YS LV
Sbjct: 387 VK-GQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKL 445
Query: 158 KAALSVIDEMVNAG 171
A VI EMV G
Sbjct: 446 SEARKVIREMVKKG 459
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY LI F KL +AS +F+ +V G+ PN + Y++L+ + + + A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 161 LSVIDEMVNAGFAPSKET 178
++DEM G P+ T
Sbjct: 682 KELLDEMSVKGLHPNAVT 699
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
R + V + +I G + + ++ +A F+ + GLTP++ YN L+ F + +
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGE 677
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+A + + + G+ PNA++Y ++D + + D A + DEM G P
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 182 VRRRCVREMDEE 193
+ C R D E
Sbjct: 738 LVDGCCRLNDVE 749
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI YN+LI K K+ EA +V G+KPNA +Y + ++ + +A
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASA 541
Query: 161 LSVIDEMVNAGFAPSK 176
+ EM G P+K
Sbjct: 542 DKYVKEMRECGVLPNK 557
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P ++Y+ LI K+K+ +A + + SLGV + +YSLL+D L R+ AA
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 161 LSVIDEMVNAGF 172
++ EMV+ G
Sbjct: 332 KGLVHEMVSHGI 343
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+L+ A + F + ++ L P + +Y +L+ + K+ + E VF+ ++ G++P+ + Y
Sbjct: 820 NLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S++++A L AL ++D+M
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQM 901
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLK-KTFEASRVFEHLVS 134
GC + D++RA F + G +NALI + FGK + KT +R+ +
Sbjct: 741 GCCRLNDVERAITIFGT--NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFD 798
Query: 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
KPN ++Y++++D + +AA + +M NA P+
Sbjct: 799 RFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 20 DSIIDMEEIFSPF--TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK--------- 68
D + D EEIF + P V + + L + + +L N+ +A +
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFS-----YGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N ++ G ++++A + + + S GL P+ +Y +I + K EA R+
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
F+ + G+ P++ Y+ LVD D + A+++
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
A + + +++ G +PN + Y+ L+ L N A+ V+ EM G AP
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
L+ A Q F + F + P S N L++ F KL KT + R F+ ++ G +P +Y+
Sbjct: 208 LEEAIQCFSKM-KRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYN 266
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+++D D +AA + +EM G P T
Sbjct: 267 IMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVT 299
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
++A+ N +I G ++DRA + + G+ PD+ Y I+ L+K A V
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGR-GIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+ G+K N++ Y+ L+DA+ + + L ++DEM
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 568
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G + LD FE + PD+ +YNALI F K K + +
Sbjct: 301 NSMIDGFGKVGRLDDTVCFFEEM-KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G+KPN +SYS LVDA + A+ +M G P++ T
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 85 DLDRAYQTFEAVGS--SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
D +R + E G + G+ P++ SYNALI+ F K K A + L G+KP+ +
Sbjct: 449 DAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLL 508
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
Y + + +AA V++EM G
Sbjct: 509 LYGTFIWGLCSLEKIEAAKVVMNEMKECG 537
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D++ A FE + GL PD +YN++I FGK+ + + FE + + +P+ ++Y
Sbjct: 277 DVEAARGLFEEMKFR-GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 335
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ L++ L EM G P+
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKGNGLKPN 366
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
+A F + + FGL + + A+I K + A+ +FE +V G+ P+ +Y+ L
Sbjct: 595 KAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSL 654
Query: 148 VDAHLTNRDQKAALSVIDEMVNAG 171
+D + + AL++ D+M G
Sbjct: 655 MDGNFKQGNVLEALALRDKMAEIG 678
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTF 123
E Y S+ NC I N+ D R VG + ++ +Y ALI ++
Sbjct: 402 EYTYTSLIDANCKI---GNLSDAFRLGNEMLQVGVEW----NVVTYTALIDGLCDAERMK 454
Query: 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
EA +F + + GV PN SY+ L+ + ++ AL +++E+ G P
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P+ ++Y +LI A K+ +A R+ ++ +GV+ N ++Y+ L+D K A
Sbjct: 397 GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 161 LSVIDEMVNAGFAPS 175
+ +M AG P+
Sbjct: 457 EELFGKMDTAGVIPN 471
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P++ SY+ L+ AF K +A + + + +G+ PN +Y+ L+DA+ + A
Sbjct: 362 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA 421
Query: 161 LSVIDEMVNAG 171
+ +EM+ G
Sbjct: 422 FRLGNEMLQVG 432
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PD +Y +L+ K EA + + + +G+K + ++Y+ LV + A
Sbjct: 643 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702
Query: 161 LSVIDEMVNAGFAPSK 176
S ++EM+ G P +
Sbjct: 703 RSFLEEMIGEGIHPDE 718
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
+ INC+ D+D A+ F+ + GL PD+ +Y+ L+ FGK ++ A +FE
Sbjct: 517 SLINCL----GKNGDVDEAHVRFKEMQEK-GLNPDVVTYSTLMECFGKTERVEMAYSLFE 571
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184
++ G +PN ++Y++L+D N A+ + +M G P T + R
Sbjct: 572 EMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLER 625
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N V + + + FE + G +PDI +YN LI +FG++ + EA +FE L
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKD-GPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
KP+ +SY+ L++ N D A EM G P
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNP 545
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 83 IWDLDRAYQTFEAVG-----SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137
I + R + EAVG + GLT ++ YN L+ K K +A +VF +V G
Sbjct: 277 IRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGC 336
Query: 138 KPNAMSYSLLVD 149
+PN +YSLL++
Sbjct: 337 RPNEYTYSLLLN 348
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ D YN + A GKLK+ +FE + G P+ +Y++L+ + + A
Sbjct: 437 GVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEA 496
Query: 161 LSVIDEMVNAGFAP 174
+++ +E+ + P
Sbjct: 497 INIFEELERSDCKP 510
>sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630
OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
Length = 826
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ N VI G A ++ A + F+ V + G+TP + ++N+LIY + K + EA ++
Sbjct: 510 IVLYNIVIDGYAKSGCIEEALELFKVVIET-GITPSVATFNSLIYGYCKTQNIAEARKIL 568
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ + G+ P+ +SY+ L+DA+ + K+ + EM G P+ T + + R
Sbjct: 569 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRG 628
Query: 190 MDEESNDRV 198
E+ + V
Sbjct: 629 WKHENCNHV 637
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV + N ++ G + +D A F V GL P ++S+N LI + EA +
Sbjct: 263 SVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLVPSVYSHNILINGLCLVGSIAEALEL 321
Query: 129 FEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAP 174
+ GV+P++++Y++L HL A VI +M++ G +P
Sbjct: 322 ASDMNKHGVEPDSVTYNILAKGFHLLGM-ISGAWEVIRDMLDKGLSP 367
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 4 LQRAFITLNEFETAYGDSIIDM-EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR 62
L + F L A+ + I DM ++ SP Y +++ C + +D L+++
Sbjct: 340 LAKGFHLLGMISGAW-EVIRDMLDKGLSPDVITYTILL-CGQCQLGNIDMGLVLLKDMLS 397
Query: 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122
S+ + ++ G +D A F + + GL+PD+ +Y+ +I+ KL K
Sbjct: 398 RGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKAD-GLSPDLVAYSIVIHGLCKLGKF 456
Query: 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
A +++ + + PN+ ++ L+ A S++D ++++G
Sbjct: 457 DMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSG 505
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 29 FSPFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86
SP Y +V+ C F+ +Y ++ + R P ++ A+ +LG L
Sbjct: 436 LSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCD-KRILPNSRTHGAL---LLGLCQKGML 491
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
A +++ SS G T DI YN +I + K EA +F+ ++ G+ P+ +++
Sbjct: 492 LEARSLLDSLISS-GETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNS 550
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
L+ + ++ A ++D + G APS
Sbjct: 551 LIYGYCKTQNIAEARKILDVIKLYGLAPS 579
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD +YN L F L A V ++ G+ P+ ++Y++L+ +
Sbjct: 329 GVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMG 388
Query: 161 LSVIDEMVNAGF 172
L ++ +M++ GF
Sbjct: 389 LVLLKDMLSRGF 400
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFE-ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
GL P++ SY LI A+G+ KK + A+ F + +G+KP++ SY+ L+ A+ + +
Sbjct: 443 LGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHE 502
Query: 159 AALSVIDEMVNAGFAPSKETLKKV 182
A + +EM G PS ET V
Sbjct: 503 KAYASFEEMCKEGIKPSVETYTSV 526
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S GL P + +YN L+ A+ + + + ++ + + +L +KP++++YS ++ A + RD
Sbjct: 582 SKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDF 641
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVR 183
K A MV +G P + +K+R
Sbjct: 642 KRAFFYHKMMVKSGQVPDPRSYEKLR 667
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL P HSY ALI+A+ +A FE + G+KP+ +Y+ ++DA + D
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539
Query: 161 LSVIDEMV 168
+ + M+
Sbjct: 540 MEIWKLML 547
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ + YN L+ A+ K E +F + G+KP+A +Y++L+DA+
Sbjct: 374 GIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIV 433
Query: 161 LSVIDEMVNAGFAPS 175
+++ EM + G P+
Sbjct: 434 ETLLREMEDLGLEPN 448
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRDQKA 159
GL P +YN L+ A+ + + + + LG++PN SY+ L+ A+ T +
Sbjct: 409 GLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDM 468
Query: 160 ALSVIDEMVNAGFAPSKET 178
A M G PS +
Sbjct: 469 AADAFLRMKKVGLKPSSHS 487
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167
+YN L+ F K EA V +G++P+ M+Y++L++A+ ++ EM
Sbjct: 557 TYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEM 616
Query: 168 VNAGFAP 174
P
Sbjct: 617 AALNLKP 623
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G L A + +G S GL P++ ++N LI+ F + K EAS+VF +
Sbjct: 277 NTLIAGHCEKGLLSSALKLKNMMGKS-GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMK 335
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG------------FAPSKETLKK 181
++ V PN ++Y+ L++ + D + A ++MV G F K+ +
Sbjct: 336 AVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTR 395
Query: 182 VRRRCVREMDEES 194
+ V+E+D+E+
Sbjct: 396 KAAQFVKELDKEN 408
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANI 83
+ L P VV F TL + + L A + + A+N +I G +
Sbjct: 302 SGLQPNVVT-----FNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356
Query: 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
D + A++ +E + + G+ DI +YNALI+ K KT +A++ + L + PN+ +
Sbjct: 357 GDHEMAFRFYEDMVCN-GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSST 415
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+S L+ ++ + M+ +G P+++T
Sbjct: 416 FSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTF 451
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
SV N +I G ++ A E + GL+PD+ SY+ ++ F + EA RV
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEALRV 472
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+V G+KP+ ++YS L+ R K A + +EM+ G P + T
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ AY+ + + G +P + +YNALI K +A V E + G+ P+ +SYS
Sbjct: 396 MNEAYRVLREMNDN-GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAK 203
++ + D AL V EMV G P T ++ C + +E+ D E + +
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTP + +Y +LI++ K A + + G+ PN +Y+ LVD A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 161 LSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKK 204
V+ EM + GF+PS T + CV E++ +E + +K
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 50 LDSVYFQLENLSRAEPPYK---------SVAAINCVILGCANIWDLDRAYQTFEAVGSSF 100
LD+ N+S AE +K +V N +I G ++D A F+ + +
Sbjct: 176 LDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK- 234
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P++ +YN LI + KL+K + ++ + G++PN +SY+++++ K
Sbjct: 235 GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 161 LSVIDEMVNAGFA 173
V+ EM G++
Sbjct: 295 SFVLTEMNRRGYS 307
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170
+LI F EA +VFE ++ KP+ +Y++++ H D + A ++ EMV +
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Query: 171 GF 172
GF
Sbjct: 670 GF 671
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N +I G + +D ++ ++ GL P++ SYN +I + + E S V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G + ++Y+ L+ + + AL + EM+ G PS
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 101 GLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
GL PD +Y ALI A+ G L+K A ++ +V GV P+ ++YS+L++
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEK---ALQLHNEMVEKGVLPDVVTYSVLING 564
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 37 PLVVACSR--KGFETLDSV---YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
P V+ C++ KGF TL ++ +E L + P V A N +I G + +D A +
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQP--DVFAYNALINGFCKMNRIDDATR 179
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + S +PD +YN +I + K A +V L+S +P ++Y++L++A
Sbjct: 180 VLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ AL ++DEM++ G P T + R +E
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A + E + S G PDI +YN ++ K K +A +F L +G PN+ SY+
Sbjct: 384 LDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 442
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189
+ A ++ D+ AL +I EM++ G P + T + RE
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 58 ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG 117
E LSR P + N +I G +DRA++ + G PD+ SYN L+ A
Sbjct: 253 EMLSRGLKP--DMFTYNTIIRGMCKEGMVDRAFEMVRNLELK-GCEPDVISYNILLRALL 309
Query: 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
K E ++ + S PN ++YS+L+ + + A++++ M G P
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 366
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GLTPD +SY+ LI AF + + A E ++S G P+ ++Y+ ++ N A
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 161 LSVIDEMVNAGFAPSKET 178
L + ++ G +P+ +
Sbjct: 423 LEIFGKLGEVGCSPNSSS 440
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 29 FSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD- 85
FSP T Y +++ CSR + V QL LS P I IL A + +
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQL--LSDNCQP----TVITYTILIEATMLEG 242
Query: 86 -LDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNA 141
+D A + + + S GL PD+ +YN +I G + + FE R E G +P+
Sbjct: 243 GVDEALKLMDEMLSR-GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLEL---KGCEPDV 298
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+SY++L+ A L + ++ +M + P+ T
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
P + +YN ++ F K + +A V E +V G +PN +Y++L++
Sbjct: 506 PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163
P++ +Y+ LI + K EA + + + G+ P+A SY L+ A A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 164 IDEMVNAGFAP 174
++ M++ G P
Sbjct: 391 LETMISDGCLP 401
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
D+A F+ + FG P I SYN L+ AF + K+ + +F + + GV PN +Y++
Sbjct: 95 DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP 174
L+ ++ + A +D M GF P
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKP 182
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G PD+ SY+ +I K K +A +F+ + GV P+ Y++L+D L +D K A
Sbjct: 179 GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238
Query: 161 LSVIDEMV 168
+ + D ++
Sbjct: 239 MELWDRLL 246
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVF-EHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G+ P++ +YN LI K KK FE +R F + + G KP+ SYS +++
Sbjct: 144 GVAPNLQTYNVLIKMSCK-KKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDD 202
Query: 160 ALSVIDEMVNAGFAP 174
AL + DEM G AP
Sbjct: 203 ALELFDEMSERGVAP 217
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I G ++ LD A T A T ++ +YN L+ F K+ + A+ ++ ++
Sbjct: 573 NILIHGLCSVGKLDDA-MTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMY 631
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187
+G++P+ +SY+ ++ R A+ D+ N G P+ T + R V
Sbjct: 632 KMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAVV 685
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G P + SYN LI K K EAS + ++ G KP+ +YS+L+ +R A
Sbjct: 494 GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLA 553
Query: 161 LSVIDEMVNAGF 172
L + + + +G
Sbjct: 554 LELWHQFLQSGL 565
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---GKLKKTFEASRVFEHL 132
+I G + ++D+A F + + D+ +YN ++ F GK+K++ E R+ EH
Sbjct: 296 LIHGLCDAGNVDKAESVFNELDERKA-SIDVVTYNTMLGGFCRCGKIKESLELWRIMEHK 354
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
S+ N +SY++L+ L N A + M G+A K T
Sbjct: 355 NSV----NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTT 396
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S G+ + H NALI + + EAS + G +P +SY++L+
Sbjct: 456 SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKF 515
Query: 158 KAALSVIDEMVNAGFAPSKET 178
A + + EM+ G+ P +T
Sbjct: 516 GEASAFVKEMLENGWKPDLKT 536
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV-SLGVKPNAMSY 144
LD A + F+ + S G+ PD+ YN LI F K K A +++ L+ V PN ++
Sbjct: 200 LDDALELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTH 258
Query: 145 SLLVDA 150
++++
Sbjct: 259 NIMISG 264
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146
++A + FE + GL PD++ YNAL+ ++ + + A+ +F + +G +P+ SY++
Sbjct: 316 EKAEEIFEQLQED-GLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 374
Query: 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+VDA+ A +V +EM G AP+ ++
Sbjct: 375 MVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKS 406
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116
+E+ SRA PY G A I+ L + G PD SYN ++ A+
Sbjct: 341 MESYSRAGYPY-----------GAAEIFSLMQ----------HMGCEPDRASYNIMVDAY 379
Query: 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G+ +A VFE + LG+ P S+ LL+ A+ RD +++ EM G P
Sbjct: 380 GRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEP 437
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162
T DI +YN LI +GK +F L +P+ ++++ + A+ + L
Sbjct: 471 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 530
Query: 163 VIDEMVNAGFAPSKETLKKVRRRCVRE 189
V +EM+++G AP T K + C E
Sbjct: 531 VFEEMIDSGCAPDGGTAKVLLSACSSE 557
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
SSF PD+ +N LI A+G+ + EA ++ L+ P +Y+LL+ A+
Sbjct: 149 SSF--QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLI 206
Query: 158 KAALSVIDEMVNAGFAP 174
+ A V+ EM N +P
Sbjct: 207 ERAEVVLVEMQNHHVSP 223
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PDI SYN +IYA+ + + +ASR+F + + G+ P+ ++Y+ + ++ + + A
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEA 753
Query: 161 LSVIDEMVNAGFAPSKETLKKV 182
+ V+ M+ G P++ T +
Sbjct: 754 IGVVRYMIKHGCRPNQNTYNSI 775
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD ++YN LI + EA++VFE + + G + ++Y+ L+D + + K
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 159 AALSVIDEMVNAGFAPS 175
A+ V++EMV GF+PS
Sbjct: 332 EAMKVLNEMVLNGFSPS 348
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 29 FSPFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLD 87
FSP Y L+ A +R G LD +L+N + V ++ G ++
Sbjct: 345 FSPSIVTYNSLISAYARDGM--LDEA-MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVE 401
Query: 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147
A FE + ++ G P+I ++NA I +G K E ++F+ + G+ P+ ++++ L
Sbjct: 402 SAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTL 460
Query: 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
+ N V EM AGF P +ET
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TP + +YN+L+Y + ++ + +++ G+KP+ +SY+ ++ A+ N + A
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 161 LSVIDEMVNAGFAP 174
+ EM N+G P
Sbjct: 719 SRIFSEMRNSGIVP 732
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL+PDI ++N L+ FG+ E S VF+ + G P +++ L+ A+ + A
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200
++V M++AG P T V R E +++V A
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P I +YN+LI A+ + EA + + G KP+ +Y+ L+ ++A
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 161 LSVIDEMVNAGFAPS 175
+S+ +EM NAG P+
Sbjct: 404 MSIFEEMRNAGCKPN 418
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N +I C A Q FE + ++ G + D +YNAL+ +GK + EA +V +V
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAA-GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ ++Y+ L+ A+ + A+ + ++M G P
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 10 TLNEFETAYG--------DSIIDM--EEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN 59
TLN + YG + ++D E F+P + Y ++ + + S E
Sbjct: 631 TLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 60 LSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119
L++ P + + N VI + A + F + +S G+ PD+ +YN I ++
Sbjct: 691 LAKGIKP--DIISYNTVIYAYCRNTRMRDASRIFSEMRNS-GIVPDVITYNTFIGSYAAD 747
Query: 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRDQKAALSVIDEMVNAGFAPSKET 178
EA V +++ G +PN +Y+ +VD + NR +A L V D AP E
Sbjct: 748 SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807
Query: 179 LKKVRR 184
L+ + R
Sbjct: 808 LRLLER 813
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTF-EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
G P + +YN ++ FGK+ + + + + E + S G+ P+A +Y+ L+ +
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 160 ALSVIDEMVNAGFAPSKET 178
A V +EM AGF+ K T
Sbjct: 298 AAQVFEEMKAAGFSYDKVT 316
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQKA 159
G + D++SY +LI AF + EA VF+ + G KP ++Y+++++
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNK 262
Query: 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S++++M + G AP T + C R
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132
+ ++L C+ L A + F + G +PDI + N+++ +G+ + +A+ V +++
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655
Query: 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
G P+ +Y+ L+ H + D + ++ E++ G P
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKP 697
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+TPD+ +YN ++ A + ++ +V + KPN ++Y L+ A+ ++
Sbjct: 519 GVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLM 578
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVR 188
S+ +E+ + P LK + C +
Sbjct: 579 HSLAEEVYSGVIEPRAVLLKTLVLVCSK 606
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 11 LNEFETAYGDSIIDMEEIFSPFTSLYPLVVA--CSRKGFETLDSVYFQLENLSRAEPPYK 68
L E E A+ + I + P T +Y ++ C R ++++ SR P
Sbjct: 332 LAEAEEAFSEMI---RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH--SRDITP-- 384
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
V +I G I D+ A + F + GL PD ++ LI + K +A RV
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
H++ G PN ++Y+ L+D D +A ++ EM G P+
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
+TPD+ +Y A+I F ++ EA ++F + G++P++++++ L++ + K A
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441
Query: 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194
V + M+ AG +P+ T + +E D +S
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 85 DLDRAYQTF-EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143
++D+A + E +G GL P I ++N L+ F + ++ +++ G+ PNA +
Sbjct: 541 EMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK-VRRRC-VREMDEESNDRVEAL 201
++ LV + + KAA ++ +M + G P +T + V+ C R M E E
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 202 AKKFDIRMNT 211
K F + ++T
Sbjct: 659 GKGFSVSVST 668
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V +I G DLD A + + GL P+I +YN+++ K EA ++
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ G+ + ++Y+ L+DA+ + + A ++ EM+ G P+
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ PD +Y L+ K + EA +F+ + G + +YS+L+ L +
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683
Query: 159 AALSVIDEMVNAGFAPSKE 177
A V D+M G A KE
Sbjct: 684 EAREVFDQMRREGLAADKE 702
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G +P++ +Y LI K A+ + + +G++PN +Y+ +V+ + + + A
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 510
Query: 161 LSVIDEMVNAGF 172
+ ++ E AG
Sbjct: 511 VKLVGEFEAAGL 522
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G TPD+ SY+ ++ + + + + ++ E + G+KPN+ Y ++ A
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 161 LSVIDEMVNAGFAP 174
EM+ G P
Sbjct: 336 EEAFSEMIRQGILP 349
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 47 FETLDSVYFQLENLSRAEPPYKSVAAINC---------VILGCANIWDLDRAYQTFEAVG 97
F +L Y NL A YK + + ++ G ++ A+ F+ +
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
G + + +Y+ LI F K KK EA VF+ + G+ + + D +
Sbjct: 659 GK-GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRP 717
Query: 158 KAALSVIDEMV 168
+ IDE++
Sbjct: 718 DTIVDPIDEII 728
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS 61
G + +A+ L E +T + F P Y V+ K + LD Y E +
Sbjct: 601 GKVNKAYQLLEEMKT----------KGFEPTVVTYGSVIDGLAK-IDRLDEAYMLFEE-A 648
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+++ +V + +I G + +D AY E + GLTP+++++N+L+ A K ++
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-GLTPNLYTWNSLLDALVKAEE 707
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
EA F+ + L PN ++Y +L++ R A EM G PS
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V VI G A I LD AY FE S + ++ Y++LI FGK+ + EA +
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK-RIELNVVIYSSLIDGFGKVGRIDEAYLI 679
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-------LKK 181
E L+ G+ PN +++ L+DA + + AL M P++ T L K
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Query: 182 VRR 184
VR+
Sbjct: 740 VRK 742
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+TS+ + V C + ++ LE R Y A N +I+G + D AY
Sbjct: 276 YTSM--IGVLCKANRLDEAVEMFEHLEKNRRVPCTY----AYNTMIMGYGSAGKFDEAYS 329
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
E + G P + +YN ++ K+ K EA +VFE + PN +Y++L+D
Sbjct: 330 LLERQRAK-GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDML 387
Query: 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRC-VREMDE 192
A + D M AG P+ T+ V R C +++DE
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 24 DMEEIFSPFTSLYPLVV-ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCAN 82
+M++ +P S Y +++ R G LD+ F+L + + + +V +N ++
Sbjct: 368 EMKKDAAPNLSTYNILIDMLCRAG--KLDTA-FELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142
LD A FE + TPD ++ +LI GK+ + +A +V+E ++ + N++
Sbjct: 425 SQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483
Query: 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
Y+ L+ + ++ + +M+N +P + L
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQ 91
+ SL ++ C + F+ LD + ++ +++ P SV ++LGC L Y
Sbjct: 101 YNSLLLVMARC--RNFDALDQILGEM-SVAGFGP---SVNTCIEMVLGCVKANKLREGYD 154
Query: 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
+ + F P +Y LI AF + + +F+ + LG +P ++ L+
Sbjct: 155 VVQMM-RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 152 LTNRDQKAALSVIDEM 167
+ALS++DEM
Sbjct: 214 AKEGRVDSALSLLDEM 229
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
FS +T+L A + + + +++ Q++ L EP +V +I G A +D
Sbjct: 168 FSAYTTLIGAFSAVNHS--DMMLTLFQQMQELGY-EP---TVHLFTTLIRGFAKEGRVDS 221
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + + SS L DI YN I +FGK+ K A + F + + G+KP+ ++Y+ ++
Sbjct: 222 ALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N I + +D A++ F + ++ GL PD +Y ++I K + EA +FEHL
Sbjct: 242 NVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
P +Y+ ++ + + A S+++ G PS
Sbjct: 301 KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
PD SY+ LI+ K E +F + G + +Y++++D A
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 162 SVIDEMVNAGFAPSKETLKKV 182
+++EM GF P+ T V
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSV 628
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
S+ P ++ + + E R +E L P + + LLV A N D
Sbjct: 57 SALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFD- 115
Query: 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208
A ++ EM AGF PS T ++ CV+ V + +KF R
Sbjct: 116 -ALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFR 165
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ PD+ SY L+ ++G+ ++ +A VF + KPN ++Y+ L+DA+ +N A
Sbjct: 385 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 444
Query: 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211
+ + +M G P+ ++ + C R + + D V + A+ I +NT
Sbjct: 445 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNT 495
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 54 YFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNAL 112
YF+L ++ P N +I + + +A F ++ PD+ ++ ++
Sbjct: 270 YFELMKGAKVRP---DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 326
Query: 113 IYAFGKLKKTFEASR-VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171
++ + +K E R VFE +V+ G+KPN +SY+ L+ A+ + ALSV+ ++ G
Sbjct: 327 MHLY-SVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNG 385
Query: 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215
P V C+ ++ R AK+ + M E RK
Sbjct: 386 IIPD-----VVSYTCL--LNSYGRSRQPGKAKEVFLMMRKERRK 422
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN +I + +A +F + KP+A +Y L++AH + A++++D+M+
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 205
Query: 169 NAGFAPSKETLKKVRRRC 186
A APS+ T + C
Sbjct: 206 RAAIAPSRSTYNNLINAC 223
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
+ PD +Y+ALI A G+ + A + + ++ + P+ +Y+ L++A ++ + +
Sbjct: 172 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 231
Query: 160 ALSVIDEMVNAGFAP 174
AL V +M + G P
Sbjct: 232 ALEVCKKMTDNGVGP 246
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 32/50 (64%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
G PD+ +Y ++++A+ +K +A +F + + G++P++++ S L+ A
Sbjct: 595 GCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRA 644
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
D +A F + S G+TPD+ +YN++I +GK K EA + + + GV PN +SY
Sbjct: 240 DYSKAISIFSRLKRS-GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSY 298
Query: 145 SLLVDAHLTNRDQKAALSVIDEM 167
S L+ ++ N ALSV EM
Sbjct: 299 STLLSVYVENHKFLEALSVFAEM 321
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 46 GFETLDSVYFQLENLSRAEPPYKSVAAINCVI-LGCANIW-----------DLDRAYQTF 93
+ TL SVY + A + + +NC + L NI + DR + +
Sbjct: 297 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 356
Query: 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153
+ + P++ SYN ++ +G+ + EA +F + ++ N ++Y+ ++ +
Sbjct: 357 RKMD----IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 412
Query: 154 NRDQKAALSVIDEMVNAGFAPSKET 178
+ + A +++ EM + G P+ T
Sbjct: 413 TMEHEKATNLVQEMQSRGIEPNAIT 437
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
++ +YN +I +GK + +A+ + + + S G++PNA++YS ++
Sbjct: 399 NVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTII 442
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151
S G+ P+ +Y+ +I +GK K A+ +F+ L S GV+ + + Y ++ A+
Sbjct: 427 QSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 480
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 86 LDRAYQTFEAVGS-----SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140
L +A +T EA G+ P + +Y+ALI + K K EA F ++ G KP+
Sbjct: 448 LGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPD 507
Query: 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++YS+++D L + + A + +M++ G PS
Sbjct: 508 NLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPS 542
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ C+ +LD A + FE + + PD+ +YNA+I +G+ EA R+F L
Sbjct: 301 NTLLSACSRDSNLDGAVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE 359
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
G P+A++Y+ L+ A R+ + V +M GF + T
Sbjct: 360 LKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMT 404
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 23 IDMEEIFSPFTSLYPLVVACSR-KGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81
++++ F + L+ A +R + E + VY Q++ + K N +I
Sbjct: 358 LELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG----KDEMTYNTIIHMYG 413
Query: 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA 141
LD A Q ++ + G PD +Y LI + GK +T EA+ + ++ +G+KP
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Query: 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+YS L+ + ++ A M+ +G P
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKP 506
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ GL P + +Y +LI AFGK K +A ++FE L+S G+K + Y ++ +
Sbjct: 990 NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049
Query: 159 AALSVIDEMVNAGFAPSKETL 179
A ++ M NAG P+ T+
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATM 1070
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 22/197 (11%)
Query: 17 AYGDSIIDMEEIFS--------PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK 68
A +I ++++I+S P LY +++ KG D+ E E +K
Sbjct: 868 ARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSE---MEEANFK 924
Query: 69 SVAAI-NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127
AI N ++ I D + Q ++ + + GL PD +YN LI + + ++ E
Sbjct: 925 VELAIWNSMLKMYTAIEDYKKTVQVYQRIKET-GLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRR 184
+ + + +LG+ P +Y L+ A + + A + +E+++ G + T+ K+ R
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 185 RCVREMDEESNDRVEAL 201
D S+ + E L
Sbjct: 1044 ------DSGSDSKAEKL 1054
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 88 RAYQTFEAVGSSF---GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144
+ +Q E+V + G TPD+ ++N+L+ A+ + A +F ++ G P S
Sbjct: 766 KLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESI 825
Query: 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179
++L+ A + + V++E+ + GF SK ++
Sbjct: 826 NILLHALCVDGRLEELYVVVEELQDMGFKISKSSI 860
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 38 LVVACSRKGFETLDSVYFQL-ENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAV 96
L+ C G + LD + L E + R P +I +I G N+ ++ A Q ++
Sbjct: 559 LISGCC--GKKKLDEAFMFLDEMVKRGLKPDNYTYSI--LICGLFNMNKVEEAIQFWDDC 614
Query: 97 GSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156
+ G+ PD+++Y+ +I K ++T E F+ ++S V+PN + Y+ L+ A+ +
Sbjct: 615 KRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673
Query: 157 QKAALSVIDEMVNAGFAPSKET 178
AL + ++M + G +P+ T
Sbjct: 674 LSMALELREDMKHKGISPNSAT 695
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A +I G + I ++ A FE + GL P++ Y ALI +GKL + + +
Sbjct: 694 ATYTSLIKGMSIISRVEEAKLLFEEMRME-GLEPNVFHYTALIDGYGKLGQMVKVECLLR 752
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181
+ S V PN ++Y++++ + + + A +++EM G P T K+
Sbjct: 753 EMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKE 803
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G+ P++ ++N +I G + EA E +V G++P ++YS+LV + A
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDA 362
Query: 161 LSVIDEMVNAGFAPS 175
V+ EM GF P+
Sbjct: 363 YFVLKEMTKKGFPPN 377
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 66 PYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEA 125
P K+ I L AN + + + F+ V G++PD++ + I AF K K EA
Sbjct: 237 PSKTTCNILLTSLVRAN--EFQKCCEAFDVVCK--GVSPDVYLFTTAINAFCKGGKVEEA 292
Query: 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++F + GV PN ++++ ++D A ++MV G P+
Sbjct: 293 VKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPT 342
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+V N VI G D A+ F+ G+ P + +Y+ L+ + K+ +A V
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFM-FKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFV 365
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ + G PN + Y+ L+D+ + A+ + D MV+ G + + T
Sbjct: 366 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSST 415
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133
N ++ G LD A++ + + G D SYN LI KK EA + +V
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGR-GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580
Query: 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR-EMDE 192
G+KP+ +YS+L+ + A+ D+ G P T + C + E E
Sbjct: 581 KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 640
Query: 193 ESNDRVEALAKKFDIRMNT 211
E + + + K +++ NT
Sbjct: 641 EGQEFFDEMMSK-NVQPNT 658
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++P+ +Y +LI + + EA +FE + G++PN Y+ L+D +
Sbjct: 688 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 747
Query: 161 LSVIDEMVNAGFAPSKET 178
++ EM + P+K T
Sbjct: 748 ECLLREMHSKNVHPNKIT 765
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G D + NAL++ + K EA R+ + ++ G + +SY+ L+ + A
Sbjct: 513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEA 572
Query: 161 LSVIDEMVNAGFAPSKET 178
+DEMV G P T
Sbjct: 573 FMFLDEMVKRGLKPDNYT 590
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135
+I GC + + F+ + S + P+ YN LI A+ + + A + E +
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSK-NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 687
Query: 136 GVKPNAMSY-SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
G+ PN+ +Y SL+ + +R ++A L + +EM G P+
Sbjct: 688 GISPNSATYTSLIKGMSIISRVEEAKL-LFEEMRMEGLEPN 727
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 50 LDSVYFQLENLSRAE-PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS 108
+ YF L+ +++ PP +V N +I L++A + + + S GL+ +
Sbjct: 359 IGDAYFVLKEMTKKGFPP--NVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK-GLSLTSST 415
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
YN LI + K + A R+ + ++S+G N S++ ++ ++ +AL + EM+
Sbjct: 416 YNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML 475
Query: 169 NAGFAPSKETL 179
+P L
Sbjct: 476 LRNMSPGGGLL 486
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G LD Y+ + + G PD +YNALI K +R++
Sbjct: 403 AVYTCLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTRIYN 461
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ ++P+ ++++++ ++ R+ + +V DEM+ G P
Sbjct: 462 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 505
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI ++N ++ + K +A ++F + S G PN SY++++ + A
Sbjct: 327 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 386
Query: 161 LSVIDEMVNAGFAP 174
+ D+MV++G P
Sbjct: 387 IEYFDDMVDSGLQP 400
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 69 SVAAINCVI--LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
V INC++ LG A + A F+ + F TP++ +Y L+ + +++ EA+
Sbjct: 262 GVETINCLLDSLGRAKLGK--EAQVLFDKLKERF--TPNMMTYTVLLNGWCRVRNLIEAA 317
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
R++ ++ G+KP+ ++++++++ L + + A+ + M + G P+
Sbjct: 318 RIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPN 366
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ G A + F + S G P++ SY +I F K A F
Sbjct: 332 IVAHNVMLEGLLRSMKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYF 390
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +V G++P+A Y+ L+ T + ++ EM G P +T
Sbjct: 391 DDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKT 439
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+L ++ +++ P +V + +I ++ A + F+ + S GL PD Y LI
Sbjct: 353 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 411
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
FG KK + + + G P+ +Y+ L+ + + + ++M+ PS
Sbjct: 412 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 471
Query: 176 KETLKKVRR 184
T + +
Sbjct: 472 IHTFNMIMK 480
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130
A C+I G LD Y+ + + G PD +YNALI K +R++
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTRIYN 462
Query: 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
++ ++P+ ++++++ ++ R+ + +V DEM+ G P
Sbjct: 463 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 506
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
GL PDI ++N ++ + K +A ++F + S G PN SY++++ + A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387
Query: 161 LSVIDEMVNAGFAP 174
+ D+MV++G P
Sbjct: 388 IEYFDDMVDSGLQP 401
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 69 SVAAINCVI--LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126
V INC++ LG A + A F+ + F TP++ +Y L+ + +++ EA+
Sbjct: 263 GVETINCLLDSLGRAKLGK--EAQVLFDKLKERF--TPNMMTYTVLLNGWCRVRNLIEAA 318
Query: 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
R++ ++ G+KP+ ++++++++ L + + A+ + M + G P+
Sbjct: 319 RIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPN 367
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
+ A N ++ G A + F + S G P++ SY +I F K A F
Sbjct: 333 IVAHNVMLEGLLRSMKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYF 391
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ +V G++P+A Y+ L+ T + ++ EM G P +T
Sbjct: 392 DDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKT 440
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115
+L ++ +++ P +V + +I ++ A + F+ + S GL PD Y LI
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412
Query: 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
FG KK + + + G P+ +Y+ L+ + + + ++M+ PS
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 472
Query: 176 KETLKKVRR 184
T + +
Sbjct: 473 IHTFNMIMK 481
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
V +N +I+G A D +A Q + + GL+ + ++I A +T EA +F
Sbjct: 269 VQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISALADSGRTLEAEALF 327
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
E L G+KP +Y+ L+ ++ K A S++ EM G +P + T
Sbjct: 328 EELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 96 VGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-TN 154
V +S GL P + + N+LI AFG+ ++ EA V +++ GVKP+ ++Y+ L+ A + +
Sbjct: 609 VMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVD 668
Query: 155 RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192
+ QK + V +EM+ +G P ++ + + R +R M +
Sbjct: 669 KFQKVPV-VYEEMIMSGCKPDRKA-RSMLRSALRYMKQ 704
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 91 QTFEAVG--SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
+TF+ + S G+ PD YN +I FGK A F+ ++S G++P+ ++++ L+
Sbjct: 427 KTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 486
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
D H + A + + M G P T
Sbjct: 487 DCHCKHGRHIVAEEMFEAMERRGCLPCATT 516
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114
QL +++A A + +I A+ A FE + S G+ P +YNAL+
Sbjct: 289 LQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQS-GIKPRTRAYNALLK 347
Query: 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174
+ K +A + + GV P+ +YSLL+DA++ ++A V+ EM P
Sbjct: 348 GYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQP 407
Query: 175 S 175
+
Sbjct: 408 N 408
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL P YNALI A+ + + +A F + S G+KP+ ++ + L++A +R
Sbjct: 577 SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDA 636
Query: 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188
A +V+ M G P T + + +R
Sbjct: 637 EAFAVLQYMKENGVKPDVVTYTTLMKALIR 666
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + FEA+ G P +YN +I ++G ++ + R+ + S G+ PN ++++ LV
Sbjct: 498 AEEMFEAMERR-GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLV 556
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
D + + A+ ++EM + G PS
Sbjct: 557 DVYGKSGRFNDAIECLEEMKSVGLKPS 583
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P++ ++ L+ +GK + +A E + S+G+KP++ Y+ L++A+ +
Sbjct: 542 SQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSE 601
Query: 159 AALSVIDEMVNAGFAPS 175
A++ M + G PS
Sbjct: 602 QAVNAFRVMTSDGLKPS 618
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
G++PD H+Y+ LI A+ + A V + + + V+PN+ +S L+ + +
Sbjct: 369 GVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKT 428
Query: 161 LSVIDEMVNAGFAPSKE 177
V+ EM + G P ++
Sbjct: 429 FQVLKEMKSIGVKPDRQ 445
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
LD A TF+ + S G+ PD ++N LI K + A +FE + G P A +Y+
Sbjct: 460 LDHAMTTFDRMLSE-GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYN 518
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
++++++ ++ +M + G P+
Sbjct: 519 IMINSYGDQERWDDMKRLLGKMKSQGILPN 548
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 102 LTPDIHSYNALIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
+ P+ ++ L+ F G+ +KTF+ V + + S+GVKP+ Y++++D
Sbjct: 405 VQPNSFVFSRLLAGFRDRGEWQKTFQ---VLKEMKSIGVKPDRQFYNVVIDTFGKFNCLD 461
Query: 159 AALSVIDEMVNAGFAPSKET 178
A++ D M++ G P + T
Sbjct: 462 HAMTTFDRMLSEGIEPDRVT 481
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 18 YGDSIIDMEEIFS----PFTSLY-PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAA 72
+ D+I +EE+ S P +++Y L+ A +++G F++ +P S+ A
Sbjct: 565 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP---SLLA 621
Query: 73 INCVILGCANIWDLDR----AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
+N +I N + DR A+ + + + G+ PD+ +Y L+ A ++ K + V
Sbjct: 622 LNSLI----NAFGEDRRDAEAFAVLQYMKEN-GVKPDVVTYTTLMKALIRVDKFQKVPVV 676
Query: 129 FEHLVSLGVKPNAMSYSLLVDA 150
+E ++ G KP+ + S+L A
Sbjct: 677 YEEMIMSGCKPDRKARSMLRSA 698
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168
Y+ LI+A G+ +K +EA L+S ++Y+ L+ A N D + AL++I +M
Sbjct: 170 YSILIHALGRSEKLYEA-----FLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMR 224
Query: 169 NAGF 172
G+
Sbjct: 225 QDGY 228
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 62 RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121
+ E + S A N +I G +++++A + +S G+ P+I +++ LI + ++
Sbjct: 401 KNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTAS-GVEPNIITFSTLIDGYCNVRD 459
Query: 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
A ++ + G+ P+ ++Y+ L+DAH + K AL + +M+ AG P+ T
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHT 516
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161
L P++ + L+ F K ++ A +F H+V GV PN Y+ L+ H + + A+
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAV 359
Query: 162 SVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESN 195
++ EM + +P T + C+ + E+N
Sbjct: 360 GLLSEMESLNLSPDVFTYTILINGLCIEDQVAEAN 394
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 98 SSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157
+S G+ P+++ Y I + K EA ++FE + GV PN +YS ++D + +
Sbjct: 226 TSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNV 285
Query: 158 KAALSVIDEMVNAGFAPS 175
+ A + E++ A P+
Sbjct: 286 RQAYGLYKEILVAELLPN 303
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159
FG+ P+++ YN LI+ K EA + + SL + P+ +Y++L++ L DQ A
Sbjct: 333 FGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILING-LCIEDQVA 391
Query: 160 -ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193
A + +M N PS T + +E + E
Sbjct: 392 EANRLFQKMKNERIFPSSATYNSLIHGYCKEYNME 426
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120
S EP ++ + +I G N+ D+ A + + G+ PD+ +Y ALI A K
Sbjct: 438 SGVEP---NIITFSTLIDGYCNVRDIKAAMGLYFEMTIK-GIVPDVVTYTALIDAHFKEA 493
Query: 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
EA R++ ++ G+ PN +++ LVD
Sbjct: 494 NMKEALRLYSDMLEAGIHPNDHTFACLVDG 523
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145
++ A + FE + G+ P++++Y+A+I + K +A +++ ++ + PN + +
Sbjct: 250 MEEAEKMFELM-KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFG 308
Query: 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175
LVD R+ A S+ MV G P+
Sbjct: 309 TLVDGFCKARELVTARSLFVHMVKFGVDPN 338
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S GL PD+H Y L K + ++ + + SLG+KPN Y++ + + +
Sbjct: 192 SRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKME 251
Query: 159 AALSVIDEMVNAGFAPSKET 178
A + + M G P+ T
Sbjct: 252 EAEKMFELMKKHGVLPNLYT 271
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 71 AAINCVILG-CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129
C+I G C N + L RA + F + S G+TPDI SY +++ + K+ + +
Sbjct: 550 VGFTCLIEGLCQNGYIL-RASRFFSDMRSC-GITPDICSYVSMLKGHLQEKRITDTMMLQ 607
Query: 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160
++ G+ PN + LL + N K+A
Sbjct: 608 CDMIKTGILPNLLVNQLLARFYQANGYVKSA 638
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 99 SFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158
S G+ P++ SYN ++ + K A VF +++ G+KPN +YS+L+D N D++
Sbjct: 471 SRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQ 530
Query: 159 AALSVIDEMVNA 170
AL V++ M ++
Sbjct: 531 NALEVVNHMTSS 542
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149
Y +AVG L PD Y ++ K + + ++FE + V PN + Y+ ++
Sbjct: 747 YTEMQAVG----LVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIA 802
Query: 150 AHLTNRDQKAALSVIDEMVNAGFAPSKET 178
H + A + DEM++ G P T
Sbjct: 803 GHYREGNLDEAFRLHDEMLDKGILPDGAT 831
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169
N ++ K KT EA+ + + S G+ PN +SY+ ++ H ++ A V ++
Sbjct: 447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILE 506
Query: 170 AGFAPSKETLKKVRRRCVREMDEES 194
G P+ T + C R DE++
Sbjct: 507 KGLKPNNYTYSILIDGCFRNHDEQN 531
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128
S + N +I G ++D A +E + + G++P++ +Y +L+ K + +A +
Sbjct: 583 SCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN-GISPNVITYTSLMNGLCKNNRMDQALEM 641
Query: 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176
+ + + GVK + +Y L+D + ++A ++ E++ G PS+
Sbjct: 642 RDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQ 689
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%)
Query: 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136
+ C DL A + P +Y ++I A K +A R+ + ++S G
Sbjct: 275 VQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDG 334
Query: 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178
+ N ++ + L+ H N D +AL + D+M G +P+ T
Sbjct: 335 ISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVT 376
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAY 90
P Y V+ S K D++ + E LS VAA + + C N DL A
Sbjct: 302 PSQETYTSVILASVKQGNMDDAIRLKDEMLSDG-ISMNVVAATSLITGHCKN-NDLVSAL 359
Query: 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150
F+ + G +P+ +++ LI F K + +A ++ + LG+ P+ ++
Sbjct: 360 VLFDKMEKE-GPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQG 418
Query: 151 HLTNRDQKAALSVIDEMVNAGFA 173
L + + AL + DE G A
Sbjct: 419 WLKGQKHEEALKLFDESFETGLA 441
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 31 PFTSLYPLVV--ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDR 88
P + LY L V C +S+ +++ P ++ + VIL ++D
Sbjct: 266 PDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTS---VILASVKQGNMDD 322
Query: 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148
A + + + S G++ ++ + +LI K A +F+ + G PN++++S+L+
Sbjct: 323 AIRLKDEMLSD-GISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLI 381
Query: 149 DAHLTNRDQKAALSVIDEMVNAGFAPS 175
+ N + + AL +M G PS
Sbjct: 382 EWFRKNGEMEKALEFYKKMEVLGLTPS 408
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV---------ILGCANIWDLDRAYQT 92
C + TL + NL A Y + A+ V + G + + +
Sbjct: 722 CDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKM 781
Query: 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152
FE + + +TP++ YNA+I + EA R+ + ++ G+ P+ ++ +LV +
Sbjct: 782 FEEMKKN-NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQV 840
Query: 153 TN 154
N
Sbjct: 841 GN 842
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,439,403
Number of Sequences: 539616
Number of extensions: 2982952
Number of successful extensions: 10738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 8819
Number of HSP's gapped (non-prelim): 1831
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)