Query 027083
Match_columns 228
No_of_seqs 168 out of 2124
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-36 2.3E-41 273.3 26.9 151 69-220 578-728 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-36 3.6E-41 272.1 26.5 213 2-226 486-699 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7.7E-35 1.7E-39 256.5 20.2 204 2-226 273-477 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-33 2.7E-38 248.8 22.1 214 1-226 202-441 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.1E-32 4.7E-37 246.0 20.3 186 32-227 455-641 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.8E-32 8.3E-37 244.4 19.8 205 2-227 236-440 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.2E-16 2.5E-21 92.9 6.6 49 104-152 1-49 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 3.1E-16 6.8E-21 91.1 6.6 50 139-188 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 2.3E-12 5E-17 106.6 20.9 201 2-220 121-324 (389)
10 PRK11788 tetratricopeptide rep 99.5 7.2E-12 1.6E-16 103.7 23.6 207 2-222 83-293 (389)
11 KOG4422 Uncharacterized conser 99.5 1.2E-11 2.6E-16 99.3 18.4 166 31-204 206-384 (625)
12 KOG4422 Uncharacterized conser 99.4 1.3E-11 2.9E-16 99.1 15.7 123 69-196 206-332 (625)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 1.2E-09 2.6E-14 98.7 25.9 133 69-205 600-732 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.3 2.1E-09 4.5E-14 97.2 26.1 163 33-204 602-764 (899)
15 PF12854 PPR_1: PPR repeat 99.2 2.2E-11 4.7E-16 64.2 3.8 32 101-132 2-33 (34)
16 PF12854 PPR_1: PPR repeat 99.2 2.6E-11 5.7E-16 63.9 3.9 34 135-168 1-34 (34)
17 TIGR02521 type_IV_pilW type IV 99.2 7.9E-08 1.7E-12 73.0 23.2 133 70-205 65-198 (234)
18 KOG4318 Bicoid mRNA stability 99.1 1.8E-09 3.9E-14 93.6 11.6 187 27-218 20-278 (1088)
19 TIGR02521 type_IV_pilW type IV 99.0 1E-06 2.2E-11 66.8 23.2 168 32-205 65-232 (234)
20 PF13429 TPR_15: Tetratricopep 99.0 1.1E-08 2.5E-13 81.0 12.4 155 69-227 109-264 (280)
21 PRK15174 Vi polysaccharide exp 99.0 9.5E-07 2E-11 78.1 25.0 142 69-215 245-391 (656)
22 PRK15174 Vi polysaccharide exp 99.0 8.6E-07 1.9E-11 78.4 24.2 184 34-226 112-299 (656)
23 TIGR00990 3a0801s09 mitochondr 98.9 3.7E-06 8E-11 74.0 25.6 129 34-169 367-495 (615)
24 TIGR00990 3a0801s09 mitochondr 98.8 3.2E-06 6.9E-11 74.4 23.8 189 2-206 308-497 (615)
25 TIGR00756 PPR pentatricopeptid 98.8 6.9E-09 1.5E-13 54.9 4.3 33 143-175 2-34 (35)
26 TIGR00756 PPR pentatricopeptid 98.8 7E-09 1.5E-13 54.9 4.0 33 108-140 2-34 (35)
27 PF13429 TPR_15: Tetratricopep 98.8 1.1E-07 2.3E-12 75.5 12.2 164 33-203 111-275 (280)
28 KOG4318 Bicoid mRNA stability 98.8 3.9E-08 8.5E-13 85.6 10.2 156 64-220 19-248 (1088)
29 PF10037 MRP-S27: Mitochondria 98.8 1.8E-07 4E-12 77.2 13.1 121 69-189 65-186 (429)
30 PF13812 PPR_3: Pentatricopept 98.7 1.7E-08 3.7E-13 53.1 4.1 32 143-174 3-34 (34)
31 PRK12370 invasion protein regu 98.7 2.1E-05 4.5E-10 68.4 24.5 148 50-205 320-470 (553)
32 PF13812 PPR_3: Pentatricopept 98.7 2.6E-08 5.6E-13 52.4 4.1 33 107-139 2-34 (34)
33 PRK09782 bacteriophage N4 rece 98.7 1.5E-05 3.2E-10 73.1 23.7 119 82-206 588-707 (987)
34 PF08579 RPM2: Mitochondrial r 98.7 4.2E-07 9.2E-12 60.4 10.1 79 110-188 29-116 (120)
35 KOG4626 O-linked N-acetylgluco 98.7 1.3E-05 2.9E-10 68.1 20.8 203 2-227 300-506 (966)
36 PRK09782 bacteriophage N4 rece 98.6 9.7E-05 2.1E-09 67.9 25.4 174 40-226 517-692 (987)
37 PF01535 PPR: PPR repeat; Int 98.6 1E-07 2.2E-12 48.9 3.6 29 143-171 2-30 (31)
38 PF10037 MRP-S27: Mitochondria 98.6 2.7E-06 5.8E-11 70.5 13.7 121 101-221 61-183 (429)
39 PRK11447 cellulose synthase su 98.6 0.00011 2.4E-09 69.3 26.0 187 2-206 283-525 (1157)
40 PF01535 PPR: PPR repeat; Int 98.5 1.1E-07 2.4E-12 48.8 3.4 31 107-137 1-31 (31)
41 PRK10747 putative protoheme IX 98.5 0.00014 3.1E-09 60.7 22.9 200 2-225 132-375 (398)
42 PRK10747 putative protoheme IX 98.5 7.7E-05 1.7E-09 62.2 21.1 189 2-204 201-389 (398)
43 PRK12370 invasion protein regu 98.5 0.00012 2.7E-09 63.7 22.7 161 32-204 338-501 (553)
44 PF08579 RPM2: Mitochondrial r 98.5 6.1E-06 1.3E-10 55.0 11.0 80 73-153 28-116 (120)
45 PRK11447 cellulose synthase su 98.5 0.00021 4.7E-09 67.4 25.0 188 2-206 475-701 (1157)
46 PRK10049 pgaA outer membrane p 98.4 0.00029 6.3E-09 63.7 24.7 190 2-205 251-456 (765)
47 PF06239 ECSIT: Evolutionarily 98.4 6.8E-06 1.5E-10 61.3 10.7 103 69-191 46-153 (228)
48 TIGR00540 hemY_coli hemY prote 98.3 0.00058 1.3E-08 57.2 22.5 114 105-222 262-381 (409)
49 COG3071 HemY Uncharacterized e 98.3 0.00026 5.6E-09 57.2 19.1 194 2-210 201-395 (400)
50 KOG1840 Kinesin light chain [C 98.3 0.00012 2.6E-09 62.2 17.8 216 2-221 255-501 (508)
51 PRK11189 lipoprotein NlpI; Pro 98.3 0.00087 1.9E-08 53.7 21.9 46 177-223 237-282 (296)
52 PF06239 ECSIT: Evolutionarily 98.3 2.8E-05 6.1E-10 58.0 11.6 119 30-169 45-167 (228)
53 PRK10049 pgaA outer membrane p 98.3 0.0013 2.8E-08 59.6 24.6 181 40-226 245-442 (765)
54 TIGR00540 hemY_coli hemY prote 98.3 0.00037 8E-09 58.4 19.7 131 69-204 262-398 (409)
55 KOG4626 O-linked N-acetylgluco 98.3 3.5E-05 7.6E-10 65.6 13.3 146 50-204 302-450 (966)
56 PRK14574 hmsH outer membrane p 98.2 0.00084 1.8E-08 60.8 21.7 179 2-200 48-227 (822)
57 KOG2003 TPR repeat-containing 98.2 0.00064 1.4E-08 56.2 18.8 198 2-219 504-702 (840)
58 COG3063 PilF Tfp pilus assembl 98.1 0.0021 4.4E-08 48.6 20.4 126 72-199 105-230 (250)
59 COG2956 Predicted N-acetylgluc 98.1 0.0023 4.9E-08 50.8 19.4 166 37-208 112-281 (389)
60 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.4E-09 57.4 13.6 131 71-205 2-136 (280)
61 KOG1126 DNA-binding cell divis 98.1 0.00032 7E-09 60.0 15.7 184 2-208 367-555 (638)
62 PRK14574 hmsH outer membrane p 98.1 0.0024 5.2E-08 57.9 22.1 171 29-204 324-512 (822)
63 KOG1155 Anaphase-promoting com 98.1 0.0015 3.2E-08 54.2 18.5 183 2-203 276-493 (559)
64 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00037 8E-09 57.6 15.4 126 69-202 168-294 (395)
65 TIGR03302 OM_YfiO outer membra 98.0 0.003 6.4E-08 48.6 19.3 169 33-205 34-232 (235)
66 PF04733 Coatomer_E: Coatomer 98.0 4.5E-05 9.7E-10 60.7 8.7 166 37-215 105-276 (290)
67 PF04733 Coatomer_E: Coatomer 98.0 0.00047 1E-08 54.9 14.4 136 79-226 111-250 (290)
68 COG3071 HemY Uncharacterized e 98.0 0.0057 1.2E-07 49.7 20.7 181 33-225 188-375 (400)
69 KOG1129 TPR repeat-containing 97.9 0.0017 3.6E-08 51.7 16.1 159 36-204 227-386 (478)
70 TIGR02552 LcrH_SycD type III s 97.9 0.0011 2.4E-08 46.2 14.3 107 69-180 16-122 (135)
71 KOG1070 rRNA processing protei 97.9 0.0033 7.1E-08 58.5 19.9 194 2-210 1472-1668(1710)
72 COG3063 PilF Tfp pilus assembl 97.9 0.0048 1E-07 46.7 19.8 178 34-220 37-216 (250)
73 KOG2003 TPR repeat-containing 97.9 0.0071 1.5E-07 50.2 20.0 172 1-191 537-709 (840)
74 KOG1129 TPR repeat-containing 97.9 0.00091 2E-08 53.1 14.3 170 28-205 252-424 (478)
75 PRK15359 type III secretion sy 97.9 0.0035 7.6E-08 44.5 15.9 88 78-168 32-119 (144)
76 KOG1840 Kinesin light chain [C 97.9 0.0094 2E-07 51.0 20.6 222 1-227 212-466 (508)
77 TIGR02552 LcrH_SycD type III s 97.8 0.0024 5.2E-08 44.5 14.7 108 103-214 13-121 (135)
78 PF09976 TPR_21: Tetratricopep 97.8 0.0016 3.5E-08 46.3 13.8 126 71-201 13-143 (145)
79 COG2956 Predicted N-acetylgluc 97.8 0.0094 2E-07 47.4 19.2 156 1-171 120-279 (389)
80 PRK10370 formate-dependent nit 97.8 0.0032 6.8E-08 47.3 15.8 134 83-222 52-188 (198)
81 COG5010 TadD Flp pilus assembl 97.8 0.005 1.1E-07 47.3 16.6 130 69-202 99-228 (257)
82 cd00189 TPR Tetratricopeptide 97.8 0.00081 1.8E-08 42.6 11.2 92 74-168 4-95 (100)
83 PRK15359 type III secretion sy 97.8 0.0022 4.9E-08 45.5 14.2 109 91-206 14-122 (144)
84 PRK10370 formate-dependent nit 97.8 0.0048 1E-07 46.3 16.2 128 51-185 56-186 (198)
85 cd05804 StaR_like StaR_like; a 97.7 0.018 4E-07 47.0 20.6 117 84-204 94-214 (355)
86 KOG2076 RNA polymerase III tra 97.7 0.026 5.7E-07 50.4 21.3 194 2-211 153-351 (895)
87 cd00189 TPR Tetratricopeptide 97.7 0.0015 3.3E-08 41.3 10.8 95 109-205 3-97 (100)
88 PRK15179 Vi polysaccharide bio 97.7 0.026 5.7E-07 50.4 21.2 143 69-218 85-229 (694)
89 PF12921 ATP13: Mitochondrial 97.7 0.0013 2.9E-08 45.5 10.5 98 70-188 2-100 (126)
90 PF12921 ATP13: Mitochondrial 97.6 0.0015 3.3E-08 45.2 9.9 99 105-223 1-100 (126)
91 KOG1126 DNA-binding cell divis 97.5 0.0035 7.6E-08 53.9 13.5 127 31-167 420-549 (638)
92 KOG1914 mRNA cleavage and poly 97.5 0.034 7.4E-07 47.3 18.5 132 70-204 366-500 (656)
93 TIGR03302 OM_YfiO outer membra 97.5 0.026 5.5E-07 43.4 17.6 152 69-227 32-219 (235)
94 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0089 1.9E-07 40.3 12.8 99 72-170 4-105 (119)
95 COG4783 Putative Zn-dependent 97.5 0.011 2.4E-07 49.3 14.9 127 70-203 307-435 (484)
96 PRK11189 lipoprotein NlpI; Pro 97.4 0.042 9.2E-07 44.0 23.4 126 34-168 66-192 (296)
97 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.013 2.8E-07 39.5 13.0 98 108-207 4-107 (119)
98 cd05804 StaR_like StaR_like; a 97.4 0.05 1.1E-06 44.4 23.4 98 70-169 114-214 (355)
99 KOG3941 Intermediate in Toll s 97.4 0.0018 3.9E-08 50.5 9.2 32 160-191 142-173 (406)
100 PF09976 TPR_21: Tetratricopep 97.4 0.014 3.1E-07 41.4 13.4 128 33-166 13-143 (145)
101 PF05843 Suf: Suppressor of fo 97.4 0.0067 1.5E-07 48.2 12.7 144 34-186 3-150 (280)
102 PF12569 NARP1: NMDA receptor- 97.4 0.075 1.6E-06 45.9 22.2 135 72-209 145-295 (517)
103 CHL00033 ycf3 photosystem I as 97.4 0.012 2.6E-07 42.8 13.3 62 72-134 37-100 (168)
104 PRK15179 Vi polysaccharide bio 97.4 0.046 9.9E-07 48.9 18.9 143 32-183 86-229 (694)
105 KOG3081 Vesicle coat complex C 97.4 0.02 4.2E-07 44.4 14.3 150 41-205 117-271 (299)
106 PF12895 Apc3: Anaphase-promot 97.3 0.00055 1.2E-08 43.7 5.0 81 83-165 2-82 (84)
107 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.017 3.8E-07 47.9 14.8 121 37-168 174-295 (395)
108 PF12895 Apc3: Anaphase-promot 97.3 0.00069 1.5E-08 43.3 5.2 80 119-201 2-83 (84)
109 KOG2002 TPR-containing nuclear 97.3 0.0085 1.8E-07 53.9 13.1 131 72-204 566-708 (1018)
110 KOG3785 Uncharacterized conser 97.3 0.016 3.5E-07 46.8 13.4 130 74-208 363-493 (557)
111 CHL00033 ycf3 photosystem I as 97.3 0.021 4.5E-07 41.5 13.3 136 89-226 18-166 (168)
112 PF12569 NARP1: NMDA receptor- 97.3 0.11 2.3E-06 45.0 20.3 129 72-204 196-333 (517)
113 KOG3941 Intermediate in Toll s 97.2 0.0091 2E-07 46.7 11.4 102 67-169 64-187 (406)
114 PLN03088 SGT1, suppressor of 97.2 0.018 3.9E-07 47.4 13.7 102 79-185 11-112 (356)
115 KOG1070 rRNA processing protei 97.2 0.15 3.3E-06 48.1 19.8 163 31-201 1529-1696(1710)
116 PF14559 TPR_19: Tetratricopep 97.1 0.0023 4.9E-08 38.9 6.1 52 82-135 3-54 (68)
117 KOG1155 Anaphase-promoting com 97.1 0.12 2.6E-06 43.3 20.9 197 5-221 347-550 (559)
118 COG5010 TadD Flp pilus assembl 97.1 0.055 1.2E-06 41.7 14.3 121 38-166 106-227 (257)
119 KOG0495 HAT repeat protein [RN 97.1 0.11 2.4E-06 45.4 17.2 180 2-204 665-845 (913)
120 KOG1915 Cell cycle control pro 97.1 0.15 3.2E-06 43.0 19.8 127 72-205 143-273 (677)
121 KOG1915 Cell cycle control pro 97.1 0.086 1.9E-06 44.3 15.9 130 69-204 106-235 (677)
122 PF03704 BTAD: Bacterial trans 97.1 0.0061 1.3E-07 43.2 8.5 71 109-180 65-140 (146)
123 PRK02603 photosystem I assembl 97.0 0.07 1.5E-06 39.0 15.7 87 69-157 34-122 (172)
124 PF14559 TPR_19: Tetratricopep 97.0 0.0034 7.4E-08 38.1 6.1 64 117-183 2-65 (68)
125 PF14938 SNAP: Soluble NSF att 97.0 0.12 2.5E-06 41.2 18.0 130 72-205 77-225 (282)
126 KOG2053 Mitochondrial inherita 97.0 0.28 6E-06 44.3 22.0 180 2-199 23-213 (932)
127 PLN03088 SGT1, suppressor of 96.9 0.048 1E-06 44.9 13.9 91 114-206 10-100 (356)
128 KOG2002 TPR-containing nuclear 96.9 0.084 1.8E-06 47.8 15.7 119 85-206 627-746 (1018)
129 PF03704 BTAD: Bacterial trans 96.9 0.01 2.2E-07 42.1 8.5 72 72-145 64-140 (146)
130 KOG1128 Uncharacterized conser 96.9 0.076 1.7E-06 46.7 14.7 180 33-220 425-632 (777)
131 KOG2076 RNA polymerase III tra 96.9 0.1 2.2E-06 46.8 15.7 162 39-204 384-554 (895)
132 KOG3081 Vesicle coat complex C 96.8 0.17 3.6E-06 39.4 17.2 139 71-221 109-251 (299)
133 PF04840 Vps16_C: Vps16, C-ter 96.8 0.04 8.7E-07 44.6 11.7 107 72-199 179-285 (319)
134 PRK15363 pathogenicity island 96.8 0.042 9.1E-07 39.4 10.5 83 82-168 47-130 (157)
135 COG4783 Putative Zn-dependent 96.7 0.29 6.3E-06 41.2 18.5 143 56-222 328-473 (484)
136 PRK02603 photosystem I assembl 96.6 0.16 3.5E-06 37.0 15.1 84 106-191 35-121 (172)
137 PF13432 TPR_16: Tetratricopep 96.6 0.021 4.5E-07 34.2 7.1 53 115-168 6-58 (65)
138 KOG3060 Uncharacterized conser 96.5 0.28 6.1E-06 38.0 14.7 31 139-169 152-182 (289)
139 PRK14720 transcript cleavage f 96.5 0.73 1.6E-05 42.5 19.2 131 71-206 117-253 (906)
140 KOG3616 Selective LIM binding 96.4 0.074 1.6E-06 47.1 11.5 100 50-164 748-847 (1636)
141 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.15 3.2E-06 42.7 12.5 131 69-204 396-530 (660)
142 PF13170 DUF4003: Protein of u 96.3 0.41 8.8E-06 38.4 16.4 128 86-216 78-222 (297)
143 PRK10803 tol-pal system protei 96.3 0.14 3.1E-06 40.2 12.0 99 106-206 143-247 (263)
144 PF04840 Vps16_C: Vps16, C-ter 96.3 0.41 8.8E-06 38.8 14.7 128 34-191 179-306 (319)
145 KOG1173 Anaphase-promoting com 96.3 0.13 2.8E-06 44.0 12.0 118 80-201 390-514 (611)
146 PF13432 TPR_16: Tetratricopep 96.2 0.031 6.8E-07 33.4 6.4 56 78-135 5-60 (65)
147 KOG0547 Translocase of outer m 96.1 0.71 1.5E-05 39.2 15.9 126 35-168 363-489 (606)
148 PRK10803 tol-pal system protei 96.1 0.22 4.7E-06 39.2 12.2 98 70-170 143-246 (263)
149 KOG3617 WD40 and TPR repeat-co 96.1 0.42 9E-06 43.2 14.7 172 2-204 742-940 (1416)
150 PRK14720 transcript cleavage f 96.1 1 2.3E-05 41.5 17.5 128 32-169 31-177 (906)
151 PRK10153 DNA-binding transcrip 96.0 0.92 2E-05 39.4 17.6 134 68-206 335-483 (517)
152 PF13414 TPR_11: TPR repeat; P 96.0 0.064 1.4E-06 32.4 7.1 59 107-166 4-63 (69)
153 KOG1914 mRNA cleavage and poly 96.0 0.93 2E-05 39.0 16.3 155 31-190 365-524 (656)
154 PF13929 mRNA_stabil: mRNA sta 95.9 0.32 6.9E-06 38.4 12.1 140 49-188 143-290 (292)
155 PF13424 TPR_12: Tetratricopep 95.9 0.033 7.1E-07 34.7 5.7 60 108-167 7-72 (78)
156 PRK15363 pathogenicity island 95.9 0.28 6.1E-06 35.2 10.8 93 112-206 41-133 (157)
157 KOG0547 Translocase of outer m 95.9 0.94 2E-05 38.5 16.6 128 72-204 428-565 (606)
158 KOG2796 Uncharacterized conser 95.9 0.63 1.4E-05 36.4 13.2 146 74-223 181-331 (366)
159 KOG0985 Vesicle coat protein c 95.8 1.6 3.5E-05 40.6 19.2 115 71-201 1105-1219(1666)
160 KOG2053 Mitochondrial inherita 95.7 0.39 8.5E-06 43.4 13.0 130 50-188 25-156 (932)
161 KOG2796 Uncharacterized conser 95.7 0.76 1.6E-05 36.0 13.8 142 35-183 180-326 (366)
162 KOG0553 TPR repeat-containing 95.7 0.41 8.8E-06 37.9 11.6 103 80-188 91-194 (304)
163 KOG0985 Vesicle coat protein c 95.7 1.7 3.6E-05 40.5 16.6 85 33-129 1105-1189(1666)
164 PRK10153 DNA-binding transcrip 95.6 1.4 3E-05 38.3 16.0 144 31-180 336-490 (517)
165 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.64 1.4E-05 39.2 13.1 63 69-134 74-140 (453)
166 PF13371 TPR_9: Tetratricopept 95.5 0.19 4.2E-06 30.6 7.8 54 115-169 4-57 (73)
167 COG3629 DnrI DNA-binding trans 95.4 0.34 7.4E-06 38.3 10.6 80 108-188 155-239 (280)
168 KOG4570 Uncharacterized conser 95.4 0.13 2.7E-06 41.1 8.0 101 69-171 63-165 (418)
169 KOG1125 TPR repeat-containing 95.4 0.63 1.4E-05 40.0 12.6 118 82-202 406-524 (579)
170 KOG3785 Uncharacterized conser 95.3 1.3 2.9E-05 36.2 14.8 51 78-130 401-452 (557)
171 KOG0495 HAT repeat protein [RN 95.2 2.1 4.5E-05 37.9 21.9 141 69-216 549-689 (913)
172 KOG2047 mRNA splicing factor [ 95.2 2 4.4E-05 37.8 16.3 168 33-208 211-419 (835)
173 KOG2047 mRNA splicing factor [ 95.2 2.1 4.6E-05 37.7 17.0 57 71-132 139-195 (835)
174 PF14938 SNAP: Soluble NSF att 95.0 1.4 3E-05 35.0 15.6 110 78-188 122-247 (282)
175 KOG3616 Selective LIM binding 95.0 0.16 3.5E-06 45.1 8.3 105 81-199 743-847 (1636)
176 KOG4340 Uncharacterized conser 95.0 1.4 3.1E-05 35.1 12.7 36 2-46 158-193 (459)
177 KOG4570 Uncharacterized conser 94.9 0.23 5E-06 39.7 8.2 99 32-135 64-164 (418)
178 PF13371 TPR_9: Tetratricopept 94.9 0.35 7.6E-06 29.4 7.8 62 78-143 3-64 (73)
179 PF13414 TPR_11: TPR repeat; P 94.8 0.26 5.6E-06 29.7 6.9 64 69-134 2-66 (69)
180 PF12688 TPR_5: Tetratrico pep 94.8 0.85 1.8E-05 31.3 13.1 101 80-187 11-117 (120)
181 KOG2376 Signal recognition par 94.7 0.68 1.5E-05 40.1 11.0 122 37-172 14-141 (652)
182 KOG1125 TPR repeat-containing 94.7 2.4 5.1E-05 36.7 14.1 131 64-198 424-564 (579)
183 PF13424 TPR_12: Tetratricopep 94.6 0.18 3.9E-06 31.2 5.9 64 141-204 5-74 (78)
184 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 1.1 2.5E-05 37.7 11.9 64 105-170 74-141 (453)
185 PF13170 DUF4003: Protein of u 94.5 2.1 4.5E-05 34.4 19.1 121 86-208 119-254 (297)
186 KOG1173 Anaphase-promoting com 94.4 3 6.5E-05 36.1 20.0 139 42-187 390-533 (611)
187 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.87 1.9E-05 29.8 9.6 62 158-221 24-86 (103)
188 PRK04841 transcriptional regul 94.3 4.5 9.8E-05 37.6 19.9 136 71-206 613-761 (903)
189 KOG1128 Uncharacterized conser 94.3 2 4.3E-05 38.3 13.0 134 49-188 500-635 (777)
190 smart00299 CLH Clathrin heavy 94.2 1.3 2.7E-05 31.0 14.9 24 109-132 72-95 (140)
191 PF12688 TPR_5: Tetratrico pep 94.2 1.2 2.6E-05 30.5 12.9 101 115-221 10-116 (120)
192 COG3629 DnrI DNA-binding trans 94.1 1.2 2.6E-05 35.3 10.6 79 72-152 155-238 (280)
193 PF13929 mRNA_stabil: mRNA sta 94.0 2.5 5.4E-05 33.6 14.2 145 73-220 134-287 (292)
194 PLN02789 farnesyltranstransfer 94.0 2.8 6.1E-05 34.0 21.7 166 33-205 72-250 (320)
195 PRK15331 chaperone protein Sic 93.9 1.7 3.7E-05 31.4 10.3 85 82-169 49-133 (165)
196 PF02284 COX5A: Cytochrome c o 93.8 0.91 2E-05 30.0 7.9 43 161-203 30-72 (108)
197 KOG2376 Signal recognition par 93.7 4.4 9.5E-05 35.4 16.8 163 32-200 339-515 (652)
198 PF13762 MNE1: Mitochondrial s 93.7 1.3 2.9E-05 31.3 9.2 84 70-154 39-128 (145)
199 KOG0553 TPR repeat-containing 93.5 2.2 4.7E-05 33.9 11.0 101 116-221 91-192 (304)
200 COG5107 RNA14 Pre-mRNA 3'-end 93.4 4.5 9.7E-05 34.4 14.1 144 33-187 398-546 (660)
201 KOG2041 WD40 repeat protein [G 93.2 2.6 5.6E-05 37.6 12.0 26 71-96 797-822 (1189)
202 PF04053 Coatomer_WDAD: Coatom 93.2 1.2 2.6E-05 37.9 9.9 100 77-198 325-424 (443)
203 PF09205 DUF1955: Domain of un 93.0 2.2 4.7E-05 29.9 12.7 117 69-208 33-152 (161)
204 PF13762 MNE1: Mitochondrial s 93.0 2.4 5.1E-05 30.1 11.2 98 96-194 28-133 (145)
205 KOG0543 FKBP-type peptidyl-pro 92.7 3.7 8.1E-05 34.0 11.6 125 78-205 216-355 (397)
206 KOG1127 TPR repeat-containing 92.4 6 0.00013 36.8 13.3 130 69-204 525-658 (1238)
207 PF10602 RPN7: 26S proteasome 92.3 2.7 5.8E-05 31.0 9.7 63 71-134 37-101 (177)
208 PF07079 DUF1347: Protein of u 92.2 6.6 0.00014 33.4 16.9 198 2-210 20-259 (549)
209 PF10602 RPN7: 26S proteasome 92.2 3.6 7.8E-05 30.3 12.5 96 108-203 38-140 (177)
210 KOG4162 Predicted calmodulin-b 92.0 6.4 0.00014 35.4 12.8 131 70-205 650-783 (799)
211 PRK04841 transcriptional regul 91.9 11 0.00023 35.2 20.8 200 2-205 505-720 (903)
212 KOG4340 Uncharacterized conser 91.8 5.7 0.00012 31.9 13.0 138 69-211 43-213 (459)
213 PF02284 COX5A: Cytochrome c o 91.6 2.6 5.6E-05 27.9 7.7 43 89-132 29-71 (108)
214 smart00299 CLH Clathrin heavy 91.1 3.9 8.4E-05 28.5 13.2 21 76-96 75-95 (140)
215 PF10300 DUF3808: Protein of u 91.0 9.4 0.0002 32.9 16.3 129 72-204 231-375 (468)
216 KOG1174 Anaphase-promoting com 90.8 9 0.00019 32.3 16.9 145 69-221 367-514 (564)
217 PF00637 Clathrin: Region in C 90.7 0.053 1.2E-06 38.2 -0.7 85 76-168 13-97 (143)
218 KOG3617 WD40 and TPR repeat-co 90.7 14 0.0003 34.1 13.7 24 72-95 860-883 (1416)
219 COG4235 Cytochrome c biogenesi 90.6 7.5 0.00016 31.0 12.0 102 104-207 154-258 (287)
220 KOG1156 N-terminal acetyltrans 90.5 12 0.00026 33.2 12.8 99 70-172 371-470 (700)
221 PRK10866 outer membrane biogen 90.5 6.9 0.00015 30.4 16.9 56 148-203 182-239 (243)
222 PF08631 SPO22: Meiosis protei 90.5 7.6 0.00016 30.8 18.5 166 33-203 85-273 (278)
223 PF10300 DUF3808: Protein of u 90.3 11 0.00024 32.4 18.8 142 72-215 190-345 (468)
224 PF13428 TPR_14: Tetratricopep 89.9 1.7 3.7E-05 23.6 5.2 26 110-135 5-30 (44)
225 COG1729 Uncharacterized protei 89.8 8.2 0.00018 30.3 11.4 99 69-170 141-244 (262)
226 PF13512 TPR_18: Tetratricopep 89.7 5.6 0.00012 28.1 10.6 87 69-156 10-97 (142)
227 PF13176 TPR_7: Tetratricopept 89.3 0.89 1.9E-05 23.5 3.6 23 109-131 2-24 (36)
228 PF07079 DUF1347: Protein of u 89.3 13 0.00028 31.7 14.3 137 74-223 50-207 (549)
229 PF11848 DUF3368: Domain of un 89.2 2.3 5.1E-05 23.8 5.4 31 153-183 14-44 (48)
230 PLN02789 farnesyltranstransfer 89.1 11 0.00024 30.7 20.5 147 35-189 40-189 (320)
231 PF07035 Mic1: Colon cancer-as 89.0 7.2 0.00016 28.4 15.3 124 68-206 27-150 (167)
232 COG4235 Cytochrome c biogenesi 88.7 11 0.00023 30.1 14.0 111 69-184 155-268 (287)
233 PF00637 Clathrin: Region in C 88.5 0.11 2.3E-06 36.6 -0.5 130 36-191 11-140 (143)
234 PF13374 TPR_10: Tetratricopep 88.4 1.6 3.4E-05 22.9 4.3 25 108-132 4-28 (42)
235 PF04053 Coatomer_WDAD: Coatom 88.3 15 0.00033 31.4 13.8 82 68-165 345-426 (443)
236 KOG4555 TPR repeat-containing 88.1 7.2 0.00016 27.4 10.4 51 80-132 53-103 (175)
237 PRK15331 chaperone protein Sic 88.1 8.2 0.00018 28.0 9.3 87 116-204 47-133 (165)
238 cd00923 Cyt_c_Oxidase_Va Cytoc 87.9 5.7 0.00012 26.0 8.4 45 88-133 25-69 (103)
239 KOG4077 Cytochrome c oxidase, 87.9 5.1 0.00011 27.7 7.2 44 125-168 68-111 (149)
240 COG4455 ImpE Protein of avirul 87.8 5.9 0.00013 30.3 8.2 77 72-150 3-81 (273)
241 PF13176 TPR_7: Tetratricopept 87.6 1.3 2.7E-05 23.0 3.5 23 144-166 2-24 (36)
242 COG1729 Uncharacterized protei 87.2 13 0.00028 29.3 12.2 99 106-205 142-244 (262)
243 PF04184 ST7: ST7 protein; In 87.0 19 0.00042 31.0 12.4 78 112-189 265-344 (539)
244 PF11848 DUF3368: Domain of un 86.3 3.1 6.8E-05 23.3 4.8 38 183-220 9-46 (48)
245 KOG1156 N-terminal acetyltrans 85.7 25 0.00055 31.3 18.9 142 69-216 108-257 (700)
246 KOG1585 Protein required for f 85.6 15 0.00033 28.7 10.6 54 144-198 193-249 (308)
247 PF09205 DUF1955: Domain of un 85.6 10 0.00022 26.6 13.9 83 84-173 70-152 (161)
248 PF13374 TPR_10: Tetratricopep 85.6 2.6 5.6E-05 22.0 4.2 28 141-168 2-29 (42)
249 KOG2280 Vacuolar assembly/sort 85.2 12 0.00025 33.8 9.8 109 72-200 686-794 (829)
250 COG2178 Predicted RNA-binding 85.1 11 0.00024 28.1 8.3 17 118-134 133-149 (204)
251 KOG2610 Uncharacterized conser 85.1 20 0.00043 29.5 11.8 142 57-203 126-274 (491)
252 PF07035 Mic1: Colon cancer-as 84.7 13 0.00029 27.1 13.0 126 27-171 24-150 (167)
253 PF13428 TPR_14: Tetratricopep 84.4 2.5 5.5E-05 22.9 3.8 28 143-170 3-30 (44)
254 PRK10564 maltose regulon perip 84.3 3.2 6.9E-05 33.1 5.5 37 102-138 252-289 (303)
255 PF13525 YfiO: Outer membrane 84.2 15 0.00033 27.5 16.1 178 1-196 18-198 (203)
256 PF13281 DUF4071: Domain of un 84.2 23 0.0005 29.5 10.7 76 112-187 147-228 (374)
257 KOG0624 dsRNA-activated protei 83.9 23 0.0005 29.2 17.4 126 2-133 120-250 (504)
258 PF09613 HrpB1_HrpK: Bacterial 83.9 14 0.0003 26.7 12.0 77 72-153 9-89 (160)
259 PF11846 DUF3366: Domain of un 83.6 6.9 0.00015 29.1 7.0 32 138-169 141-172 (193)
260 COG4700 Uncharacterized protei 83.6 16 0.00036 27.3 14.0 124 69-197 88-214 (251)
261 PF11846 DUF3366: Domain of un 82.7 8.6 0.00019 28.5 7.2 53 152-204 119-172 (193)
262 KOG4162 Predicted calmodulin-b 82.6 38 0.00082 30.8 18.5 194 7-207 332-545 (799)
263 PF11207 DUF2989: Protein of u 82.6 19 0.0004 27.2 9.0 76 118-195 119-197 (203)
264 KOG1174 Anaphase-promoting com 82.3 30 0.00064 29.3 18.8 97 32-133 194-293 (564)
265 PF13525 YfiO: Outer membrane 82.0 19 0.00041 27.0 13.5 126 80-205 15-170 (203)
266 KOG0548 Molecular co-chaperone 82.0 27 0.00058 30.3 10.3 104 78-186 10-114 (539)
267 PF13512 TPR_18: Tetratricopep 81.7 16 0.00034 25.9 12.5 52 118-169 22-75 (142)
268 PRK10564 maltose regulon perip 81.1 3.9 8.5E-05 32.7 5.0 47 137-183 252-299 (303)
269 COG3947 Response regulator con 80.8 16 0.00035 29.3 8.1 51 114-165 287-337 (361)
270 KOG2280 Vacuolar assembly/sort 80.3 7.2 0.00016 35.1 6.7 102 91-202 669-770 (829)
271 PF09613 HrpB1_HrpK: Bacterial 79.6 21 0.00045 25.8 12.1 105 105-213 6-114 (160)
272 PF08631 SPO22: Meiosis protei 79.3 29 0.00064 27.4 22.5 172 1-177 6-193 (278)
273 KOG4555 TPR repeat-containing 79.0 20 0.00043 25.2 10.1 93 115-209 52-148 (175)
274 COG5108 RPO41 Mitochondrial DN 78.9 23 0.0005 31.9 9.2 91 75-168 33-130 (1117)
275 PF13281 DUF4071: Domain of un 77.6 41 0.00088 28.1 16.7 150 72-223 143-314 (374)
276 COG4105 ComL DNA uptake lipopr 77.4 32 0.0007 26.9 16.7 57 147-204 173-232 (254)
277 COG2178 Predicted RNA-binding 77.3 28 0.0006 26.1 10.4 17 188-204 133-149 (204)
278 COG5108 RPO41 Mitochondrial DN 76.2 21 0.00045 32.1 8.2 91 111-204 33-131 (1117)
279 KOG0624 dsRNA-activated protei 76.2 43 0.00094 27.7 15.2 125 79-206 115-253 (504)
280 TIGR03504 FimV_Cterm FimV C-te 76.1 5.9 0.00013 21.8 3.4 24 147-170 5-28 (44)
281 PRK10866 outer membrane biogen 75.8 35 0.00076 26.5 13.3 148 70-221 33-222 (243)
282 KOG2114 Vacuolar assembly/sort 75.6 37 0.00081 31.3 9.7 119 69-198 363-485 (933)
283 PF13174 TPR_6: Tetratricopept 75.1 3.1 6.8E-05 20.4 2.1 18 116-133 10-27 (33)
284 PF00515 TPR_1: Tetratricopept 74.9 8.6 0.00019 19.0 4.2 26 143-168 3-28 (34)
285 COG4700 Uncharacterized protei 74.7 34 0.00073 25.7 18.2 126 76-206 62-190 (251)
286 COG3118 Thioredoxin domain-con 74.2 44 0.00095 26.8 13.4 141 80-225 144-286 (304)
287 PF04184 ST7: ST7 protein; In 74.0 59 0.0013 28.2 15.0 74 79-152 268-342 (539)
288 PF07163 Pex26: Pex26 protein; 73.8 44 0.00096 26.7 10.0 50 115-164 127-181 (309)
289 KOG0550 Molecular chaperone (D 73.4 47 0.001 28.1 9.2 119 83-208 216-353 (486)
290 TIGR03504 FimV_Cterm FimV C-te 73.2 10 0.00022 20.8 3.8 25 112-136 5-29 (44)
291 PF07721 TPR_4: Tetratricopept 72.8 6.2 0.00013 18.6 2.7 14 115-128 10-23 (26)
292 KOG1127 TPR repeat-containing 72.5 91 0.002 29.7 15.3 132 70-207 492-627 (1238)
293 smart00638 LPD_N Lipoprotein N 72.5 69 0.0015 28.3 20.4 183 32-225 310-508 (574)
294 PRK11639 zinc uptake transcrip 72.2 25 0.00055 25.6 6.9 58 100-158 20-77 (169)
295 COG4455 ImpE Protein of avirul 72.2 43 0.00093 25.8 8.3 78 34-115 3-81 (273)
296 PF14689 SPOB_a: Sensor_kinase 72.1 14 0.00031 21.9 4.6 23 145-167 27-49 (62)
297 KOG1920 IkappaB kinase complex 71.0 86 0.0019 30.3 11.1 88 68-168 933-1026(1265)
298 PRK11906 transcriptional regul 71.0 67 0.0015 27.6 14.0 92 69-164 337-430 (458)
299 PF08870 DUF1832: Domain of un 70.9 17 0.00038 24.6 5.4 90 87-190 6-96 (113)
300 PF10579 Rapsyn_N: Rapsyn N-te 70.7 16 0.00034 23.0 4.6 46 82-127 18-64 (80)
301 PF11207 DUF2989: Protein of u 70.6 44 0.00094 25.2 9.2 80 79-161 116-198 (203)
302 PF11663 Toxin_YhaV: Toxin wit 70.3 5.5 0.00012 27.8 2.9 31 119-151 108-138 (140)
303 KOG0543 FKBP-type peptidyl-pro 70.1 65 0.0014 27.0 12.3 62 72-135 259-320 (397)
304 PF14689 SPOB_a: Sensor_kinase 70.1 17 0.00038 21.5 4.7 47 85-134 5-51 (62)
305 PF02847 MA3: MA3 domain; Int 69.0 31 0.00067 22.9 7.0 23 75-97 7-29 (113)
306 KOG0403 Neoplastic transformat 68.9 75 0.0016 27.3 9.6 73 75-153 514-586 (645)
307 PF13431 TPR_17: Tetratricopep 68.6 7.7 0.00017 19.7 2.6 20 141-160 13-32 (34)
308 PF11838 ERAP1_C: ERAP1-like C 68.6 59 0.0013 26.0 18.0 173 41-221 47-245 (324)
309 COG3947 Response regulator con 68.1 51 0.0011 26.6 8.0 73 142-215 280-357 (361)
310 PF11663 Toxin_YhaV: Toxin wit 66.6 6.1 0.00013 27.6 2.5 31 154-186 108-138 (140)
311 PF09454 Vps23_core: Vps23 cor 66.2 14 0.0003 22.2 3.7 51 138-189 5-55 (65)
312 PRK14958 DNA polymerase III su 65.9 93 0.002 27.3 12.4 85 90-177 184-281 (509)
313 cd07153 Fur_like Ferric uptake 65.3 18 0.0004 24.2 4.7 46 112-157 6-51 (116)
314 PF11838 ERAP1_C: ERAP1-like C 65.1 70 0.0015 25.6 14.5 63 69-135 168-230 (324)
315 TIGR03184 DNA_S_dndE DNA sulfu 64.8 28 0.00062 23.2 5.3 91 87-190 5-98 (105)
316 TIGR02508 type_III_yscG type I 64.7 39 0.00085 22.5 8.6 86 86-180 21-106 (115)
317 KOG0548 Molecular co-chaperone 64.4 99 0.0021 27.0 11.8 89 78-169 366-454 (539)
318 PF07719 TPR_2: Tetratricopept 64.3 16 0.00034 17.8 4.1 20 114-133 9-28 (34)
319 PF10366 Vps39_1: Vacuolar sor 63.7 32 0.00068 23.0 5.5 40 85-134 28-67 (108)
320 PRK14962 DNA polymerase III su 63.6 99 0.0022 26.8 15.9 127 88-217 180-325 (472)
321 PRK11639 zinc uptake transcrip 63.3 53 0.0011 23.9 7.1 50 72-122 27-76 (169)
322 PRK14963 DNA polymerase III su 63.2 1E+02 0.0023 26.9 11.1 86 87-175 178-275 (504)
323 cd07153 Fur_like Ferric uptake 63.1 17 0.00036 24.3 4.2 48 147-194 6-53 (116)
324 PRK08691 DNA polymerase III su 63.0 1.2E+02 0.0027 27.7 11.9 87 87-176 181-280 (709)
325 PF09454 Vps23_core: Vps23 cor 62.9 15 0.00032 22.1 3.4 51 102-153 4-54 (65)
326 PRK09462 fur ferric uptake reg 62.1 49 0.0011 23.4 6.6 56 101-157 12-68 (148)
327 KOG2114 Vacuolar assembly/sort 62.0 60 0.0013 30.0 8.2 74 110-191 709-786 (933)
328 KOG4077 Cytochrome c oxidase, 62.0 51 0.0011 23.0 7.0 44 89-133 68-111 (149)
329 COG0735 Fur Fe2+/Zn2+ uptake r 61.6 53 0.0011 23.2 6.6 43 112-154 26-68 (145)
330 KOG4567 GTPase-activating prot 61.4 68 0.0015 26.1 7.6 58 90-153 263-320 (370)
331 PF12796 Ank_2: Ankyrin repeat 61.3 37 0.0008 21.1 5.8 13 81-93 5-17 (89)
332 PRK09857 putative transposase; 60.6 87 0.0019 25.2 8.6 66 144-210 209-274 (292)
333 PRK14956 DNA polymerase III su 60.2 1.2E+02 0.0025 26.5 11.6 90 88-179 184-286 (484)
334 PRK07764 DNA polymerase III su 59.6 1.5E+02 0.0032 27.9 10.6 85 87-175 182-281 (824)
335 PF01475 FUR: Ferric uptake re 59.5 18 0.00039 24.5 3.9 42 113-154 14-55 (120)
336 PF10366 Vps39_1: Vacuolar sor 59.1 51 0.0011 22.0 7.3 28 142-169 40-67 (108)
337 PF14669 Asp_Glu_race_2: Putat 58.7 39 0.00085 25.4 5.5 56 75-130 137-205 (233)
338 COG3898 Uncharacterized membra 58.5 1.1E+02 0.0025 25.8 16.9 175 34-212 84-299 (531)
339 KOG2908 26S proteasome regulat 58.1 1.1E+02 0.0023 25.3 9.5 57 78-134 83-143 (380)
340 TIGR02508 type_III_yscG type I 58.0 53 0.0012 21.9 7.6 80 121-207 20-99 (115)
341 smart00638 LPD_N Lipoprotein N 56.6 1.4E+02 0.0031 26.4 15.6 112 105-222 309-422 (574)
342 PF12926 MOZART2: Mitotic-spin 56.5 51 0.0011 21.1 8.0 42 127-168 29-70 (88)
343 TIGR02561 HrpB1_HrpK type III 56.4 72 0.0016 22.9 11.6 48 83-135 23-73 (153)
344 KOG4648 Uncharacterized conser 56.3 1.2E+02 0.0025 25.3 8.3 80 78-168 105-185 (536)
345 PF01475 FUR: Ferric uptake re 56.1 18 0.0004 24.4 3.5 49 145-193 11-59 (120)
346 cd00280 TRFH Telomeric Repeat 56.0 84 0.0018 23.5 7.8 48 86-134 85-139 (200)
347 KOG4648 Uncharacterized conser 55.7 48 0.001 27.4 6.1 96 115-215 106-202 (536)
348 KOG1920 IkappaB kinase complex 55.6 1.3E+02 0.0027 29.3 9.3 77 76-164 971-1049(1265)
349 PHA02875 ankyrin repeat protei 55.6 87 0.0019 26.2 8.1 120 73-210 35-162 (413)
350 PRK09857 putative transposase; 55.5 1.1E+02 0.0023 24.6 8.6 68 107-175 207-274 (292)
351 KOG0890 Protein kinase of the 55.4 2.8E+02 0.006 29.4 12.1 146 41-198 1392-1540(2382)
352 PF13181 TPR_8: Tetratricopept 55.1 25 0.00054 17.2 4.1 25 109-133 4-28 (34)
353 COG2405 Predicted nucleic acid 55.1 35 0.00075 24.1 4.5 35 186-220 119-153 (157)
354 PRK14951 DNA polymerase III su 54.9 1.6E+02 0.0035 26.5 11.5 87 87-176 186-285 (618)
355 COG3898 Uncharacterized membra 54.5 1.3E+02 0.0029 25.4 19.2 181 1-201 133-354 (531)
356 PF07575 Nucleopor_Nup85: Nup8 54.1 84 0.0018 27.9 8.0 62 69-133 404-465 (566)
357 COG0819 TenA Putative transcri 52.9 1E+02 0.0022 23.6 8.5 90 132-221 100-200 (218)
358 PRK06645 DNA polymerase III su 52.2 1.6E+02 0.0036 25.8 10.8 87 87-176 190-292 (507)
359 KOG4567 GTPase-activating prot 51.8 81 0.0018 25.7 6.6 57 161-222 263-319 (370)
360 KOG1538 Uncharacterized conser 51.2 1.9E+02 0.0042 26.3 12.3 88 108-206 749-847 (1081)
361 PF02847 MA3: MA3 domain; Int 51.0 69 0.0015 21.1 8.3 63 110-174 6-70 (113)
362 COG0735 Fur Fe2+/Zn2+ uptake r 50.8 87 0.0019 22.1 7.7 64 128-192 8-71 (145)
363 PF06552 TOM20_plant: Plant sp 50.3 1E+02 0.0022 22.9 8.3 43 122-172 96-138 (186)
364 cd00280 TRFH Telomeric Repeat 49.7 1.1E+02 0.0023 22.9 10.9 65 122-189 85-156 (200)
365 COG2405 Predicted nucleic acid 48.4 45 0.00097 23.6 4.2 42 143-185 112-153 (157)
366 PF14669 Asp_Glu_race_2: Putat 48.2 54 0.0012 24.7 4.8 24 177-200 182-205 (233)
367 PF07575 Nucleopor_Nup85: Nup8 47.1 73 0.0016 28.3 6.5 78 139-218 403-480 (566)
368 cd08315 Death_TRAILR_DR4_DR5 D 47.0 79 0.0017 20.6 5.6 49 85-136 46-94 (96)
369 KOG3060 Uncharacterized conser 46.7 1.5E+02 0.0032 23.6 17.9 100 69-171 119-221 (289)
370 KOG2223 Uncharacterized conser 46.1 1.9E+02 0.0042 24.8 8.4 43 127-169 460-502 (586)
371 PF11817 Foie-gras_1: Foie gra 45.9 1.4E+02 0.0031 23.2 8.2 59 144-202 181-244 (247)
372 PF02607 B12-binding_2: B12 bi 45.5 70 0.0015 19.5 5.4 40 152-191 12-51 (79)
373 TIGR01914 cas_Csa4 CRISPR-asso 45.4 1.7E+02 0.0037 24.0 7.7 73 110-187 278-352 (354)
374 smart00386 HAT HAT (Half-A-TPR 45.2 35 0.00077 16.1 3.7 14 85-98 2-15 (33)
375 COG5210 GTPase-activating prot 45.0 2.1E+02 0.0046 24.9 9.2 62 160-221 361-422 (496)
376 TIGR02561 HrpB1_HrpK type III 45.0 1.1E+02 0.0025 21.9 10.3 51 64-120 40-90 (153)
377 PLN03025 replication factor C 44.8 1.7E+02 0.0036 23.7 15.1 96 87-186 161-268 (319)
378 PRK08691 DNA polymerase III su 44.6 2.6E+02 0.0056 25.8 10.8 85 123-210 181-279 (709)
379 PF03745 DUF309: Domain of unk 44.5 67 0.0014 19.0 5.6 47 117-163 10-61 (62)
380 smart00028 TPR Tetratricopepti 44.3 32 0.0007 15.3 3.3 25 109-133 4-28 (34)
381 PRK07003 DNA polymerase III su 44.2 2.7E+02 0.006 26.0 15.3 86 87-175 181-279 (830)
382 KOG0276 Vesicle coat complex C 43.8 2.5E+02 0.0054 25.4 9.5 81 69-165 665-745 (794)
383 smart00804 TAP_C C-terminal do 43.7 27 0.00058 20.9 2.3 26 82-107 37-62 (63)
384 PF09868 DUF2095: Uncharacteri 43.4 1E+02 0.0023 20.9 5.4 25 112-136 67-91 (128)
385 cd08819 CARD_MDA5_2 Caspase ac 43.3 89 0.0019 20.1 6.7 62 127-194 23-84 (88)
386 PF09797 NatB_MDM20: N-acetylt 43.1 79 0.0017 26.1 5.9 71 37-110 185-256 (365)
387 PF14649 Spatacsin_C: Spatacsi 42.9 1.4E+02 0.003 24.1 6.9 121 89-219 4-129 (296)
388 PF09797 NatB_MDM20: N-acetylt 42.9 1.6E+02 0.0035 24.3 7.7 68 110-178 184-254 (365)
389 PF07443 HARP: HepA-related pr 42.2 12 0.00027 21.6 0.7 34 84-118 6-39 (55)
390 PF12862 Apc5: Anaphase-promot 41.1 95 0.0021 19.8 6.7 19 150-168 50-68 (94)
391 PF02259 FAT: FAT domain; Int 40.7 1.8E+02 0.0039 23.4 7.6 70 106-175 146-218 (352)
392 PLN03025 replication factor C 40.6 2E+02 0.0042 23.3 10.9 86 123-211 161-259 (319)
393 PF11768 DUF3312: Protein of u 40.4 2.6E+02 0.0057 24.7 12.1 125 72-206 410-537 (545)
394 KOG1585 Protein required for f 39.8 1.9E+02 0.0041 22.9 11.8 25 108-132 93-117 (308)
395 COG2812 DnaX DNA polymerase II 39.8 2.7E+02 0.0058 24.6 10.4 91 86-180 180-284 (515)
396 PF09868 DUF2095: Uncharacteri 39.5 1.2E+02 0.0026 20.6 5.6 26 146-171 66-91 (128)
397 TIGR03581 EF_0839 conserved hy 38.9 1.1E+02 0.0023 23.5 5.3 82 122-203 137-235 (236)
398 COG5210 GTPase-activating prot 38.7 1.2E+02 0.0025 26.5 6.4 53 126-178 362-414 (496)
399 cd08318 Death_NMPP84 Death dom 38.2 70 0.0015 20.3 3.8 41 86-129 46-86 (86)
400 PF01347 Vitellogenin_N: Lipop 38.0 3E+02 0.0064 24.6 14.3 180 34-223 348-550 (618)
401 KOG1147 Glutamyl-tRNA syntheta 37.8 85 0.0018 27.6 5.1 70 127-204 254-331 (712)
402 PRK13342 recombination factor 37.3 2.6E+02 0.0055 23.7 12.4 34 189-222 243-276 (413)
403 smart00544 MA3 Domain in DAP-5 37.3 1.2E+02 0.0026 20.0 11.1 24 75-98 7-30 (113)
404 PRK14970 DNA polymerase III su 36.7 2.4E+02 0.0052 23.2 12.1 79 100-183 183-275 (367)
405 PRK13341 recombination factor 36.1 3.6E+02 0.0077 25.0 15.8 26 152-177 269-294 (725)
406 COG4003 Uncharacterized protei 36.1 1.2E+02 0.0025 19.3 4.8 25 112-136 37-61 (98)
407 TIGR01428 HAD_type_II 2-haloal 35.8 1.7E+02 0.0038 21.3 7.6 90 94-187 66-162 (198)
408 PF04124 Dor1: Dor1-like famil 35.0 1.5E+02 0.0032 24.3 6.2 41 107-147 107-148 (338)
409 PF09477 Type_III_YscG: Bacter 34.8 1.5E+02 0.0031 20.1 8.5 79 85-171 21-99 (116)
410 PF08461 HTH_12: Ribonuclease 34.6 1E+02 0.0023 18.4 4.5 44 147-190 3-46 (66)
411 TIGR02397 dnaX_nterm DNA polym 34.5 2.5E+02 0.0055 22.8 13.1 83 100-186 192-287 (355)
412 KOG0276 Vesicle coat complex C 34.3 3.6E+02 0.0078 24.5 10.9 100 78-199 645-744 (794)
413 PRK14960 DNA polymerase III su 34.1 3.8E+02 0.0082 24.7 12.2 86 87-175 180-278 (702)
414 PF02184 HAT: HAT (Half-A-TPR) 33.9 70 0.0015 16.2 2.6 21 122-144 3-23 (32)
415 PF11817 Foie-gras_1: Foie gra 33.9 2.2E+02 0.0049 22.0 9.4 59 110-168 182-245 (247)
416 COG4105 ComL DNA uptake lipopr 33.8 2.4E+02 0.0051 22.3 17.1 148 69-218 34-208 (254)
417 COG5187 RPN7 26S proteasome re 33.8 2.6E+02 0.0057 22.8 13.5 99 103-203 112-219 (412)
418 PF10475 DUF2450: Protein of u 33.6 2.5E+02 0.0054 22.5 9.3 25 109-133 130-154 (291)
419 PF14840 DNA_pol3_delt_C: Proc 33.5 53 0.0011 22.6 2.9 27 119-145 10-36 (125)
420 PF05261 Tra_M: TraM protein, 33.3 30 0.00065 23.8 1.5 60 119-183 10-70 (127)
421 TIGR03581 EF_0839 conserved hy 33.1 58 0.0013 24.9 3.2 41 4-47 137-178 (236)
422 PF14649 Spatacsin_C: Spatacsi 32.8 2.7E+02 0.0058 22.6 13.7 148 68-224 18-178 (296)
423 KOG2582 COP9 signalosome, subu 32.5 2.7E+02 0.0059 23.3 7.0 121 82-206 195-346 (422)
424 PF10475 DUF2450: Protein of u 32.4 2.6E+02 0.0057 22.3 8.1 49 114-168 106-154 (291)
425 KOG2659 LisH motif-containing 32.1 2.4E+02 0.0052 21.8 7.9 20 113-132 71-90 (228)
426 PF08542 Rep_fac_C: Replicatio 31.7 1.3E+02 0.0028 18.8 4.4 16 156-171 19-34 (89)
427 PRK05563 DNA polymerase III su 30.8 3.9E+02 0.0084 23.8 11.4 86 87-175 181-279 (559)
428 KOG2041 WD40 repeat protein [G 30.7 4.4E+02 0.0096 24.5 15.4 53 69-131 851-903 (1189)
429 KOG0159 Cytochrome P450 CYP11/ 30.6 3.8E+02 0.0082 23.6 11.4 82 122-208 282-363 (519)
430 PF00772 DnaB: DnaB-like helic 30.3 1.5E+02 0.0033 18.9 7.4 16 163-178 46-61 (103)
431 COG1466 HolA DNA polymerase II 29.6 3.1E+02 0.0068 22.4 9.9 80 93-175 150-242 (334)
432 PRK13713 conjugal transfer pro 29.1 1.9E+02 0.0041 19.7 6.5 28 125-152 9-36 (118)
433 cd01670 Death Death Domain: a 29.1 1.4E+02 0.003 18.1 4.5 40 86-128 38-77 (79)
434 PRK12356 glutaminase; Reviewed 29.1 3.2E+02 0.007 22.4 8.6 54 154-209 167-222 (319)
435 PRK00440 rfc replication facto 28.8 3E+02 0.0065 21.9 16.9 134 87-225 164-317 (319)
436 cd08316 Death_FAS_TNFRSF6 Deat 28.6 1.7E+02 0.0038 19.1 5.1 43 87-132 50-92 (97)
437 COG2137 OraA Uncharacterized p 28.2 2.5E+02 0.0053 20.7 13.0 37 126-164 88-124 (174)
438 PRK14952 DNA polymerase III su 27.9 4.5E+02 0.0097 23.6 13.0 85 88-175 181-279 (584)
439 PF11768 DUF3312: Protein of u 27.9 2.8E+02 0.006 24.6 6.7 101 109-211 411-529 (545)
440 PF00244 14-3-3: 14-3-3 protei 27.9 2.9E+02 0.0062 21.4 7.2 58 76-134 7-65 (236)
441 PF01347 Vitellogenin_N: Lipop 27.8 4.4E+02 0.0096 23.5 11.3 59 108-169 348-406 (618)
442 cd08326 CARD_CASP9 Caspase act 27.7 1.7E+02 0.0036 18.6 6.8 37 119-159 43-79 (84)
443 PF10155 DUF2363: Uncharacteri 27.7 2.1E+02 0.0046 19.8 11.2 94 109-203 21-125 (126)
444 PHA02875 ankyrin repeat protei 27.7 2.7E+02 0.0059 23.2 6.8 123 74-211 69-196 (413)
445 COG1747 Uncharacterized N-term 27.7 4.4E+02 0.0095 23.5 18.1 133 69-207 98-236 (711)
446 PF12926 MOZART2: Mitotic-spin 27.6 1.7E+02 0.0038 18.8 7.8 64 139-204 8-71 (88)
447 TIGR02710 CRISPR-associated pr 27.5 3.8E+02 0.0082 22.6 7.5 27 81-108 141-167 (380)
448 PRK14953 DNA polymerase III su 27.3 4.2E+02 0.0091 23.1 10.8 86 88-176 182-280 (486)
449 KOG2063 Vacuolar assembly/sort 27.2 5.5E+02 0.012 24.4 10.3 116 72-189 506-639 (877)
450 KOG0292 Vesicle coat complex C 26.7 65 0.0014 30.2 2.9 74 76-168 626-699 (1202)
451 COG5159 RPN6 26S proteasome re 26.1 3.6E+02 0.0078 22.0 6.7 49 114-162 11-66 (421)
452 KOG1586 Protein required for f 26.1 3.3E+02 0.0072 21.5 15.5 15 3-17 29-43 (288)
453 PRK14958 DNA polymerase III su 25.9 4.6E+02 0.01 23.1 12.1 77 131-210 190-279 (509)
454 TIGR01529 argR_whole arginine 25.6 1.4E+02 0.003 21.2 3.9 37 113-149 7-43 (146)
455 PRK09462 fur ferric uptake reg 25.2 2.5E+02 0.0053 19.7 7.8 64 130-194 6-70 (148)
456 TIGR01529 argR_whole arginine 25.2 1.8E+02 0.004 20.6 4.5 39 147-185 6-44 (146)
457 cd08311 Death_p75NR Death doma 24.8 1.8E+02 0.0039 18.1 4.1 36 87-127 40-75 (77)
458 KOG3807 Predicted membrane pro 24.7 2.4E+02 0.0051 23.5 5.4 67 1-77 288-354 (556)
459 PF05944 Phage_term_smal: Phag 24.7 2.4E+02 0.0052 19.7 4.9 35 138-173 46-80 (132)
460 KOG0687 26S proteasome regulat 24.6 4.1E+02 0.0089 22.0 11.5 146 37-184 71-224 (393)
461 PF11123 DNA_Packaging_2: DNA 24.6 1.8E+02 0.004 18.0 4.9 33 121-154 12-44 (82)
462 PRK14971 DNA polymerase III su 24.5 5.3E+02 0.012 23.3 11.8 84 90-176 186-282 (614)
463 TIGR00510 lipA lipoate synthas 24.5 1.1E+02 0.0023 24.8 3.6 77 126-208 156-237 (302)
464 PF14853 Fis1_TPR_C: Fis1 C-te 24.4 1.5E+02 0.0032 16.9 4.2 20 115-134 10-29 (53)
465 COG2976 Uncharacterized protei 24.4 3.2E+02 0.0069 20.7 9.4 129 70-206 54-189 (207)
466 KOG2908 26S proteasome regulat 24.3 4.2E+02 0.0091 22.1 14.0 81 114-194 83-175 (380)
467 PF07875 Coat_F: Coat F domain 24.0 1E+02 0.0022 18.1 2.7 18 157-174 44-61 (64)
468 cd08317 Death_ank Death domain 23.9 1.9E+02 0.0042 18.0 4.7 38 87-127 45-82 (84)
469 COG2812 DnaX DNA polymerase II 23.5 5.2E+02 0.011 22.9 8.9 90 49-143 179-282 (515)
470 PRK12402 replication factor C 23.3 3.9E+02 0.0085 21.4 13.0 86 87-175 187-286 (337)
471 PRK14961 DNA polymerase III su 23.3 4.3E+02 0.0094 21.9 11.9 87 87-176 181-280 (363)
472 COG2987 HutU Urocanate hydrata 23.2 96 0.0021 26.6 3.1 19 124-142 243-261 (561)
473 KOG3036 Protein involved in ce 23.1 2.9E+02 0.0063 21.9 5.4 46 121-166 211-257 (293)
474 KOG0991 Replication factor C, 23.1 3.8E+02 0.0083 21.2 10.6 105 80-189 169-285 (333)
475 PRK12928 lipoyl synthase; Prov 23.0 1.4E+02 0.0031 23.9 4.0 59 145-207 175-233 (290)
476 PRK06645 DNA polymerase III su 22.9 5.3E+02 0.011 22.7 11.1 86 123-211 190-292 (507)
477 PRK09111 DNA polymerase III su 22.7 5.7E+02 0.012 23.1 11.6 72 101-175 208-292 (598)
478 KOG0989 Replication factor C, 22.6 4.4E+02 0.0096 21.7 9.9 83 91-175 195-289 (346)
479 PF12554 MOZART1: Mitotic-spin 22.5 1.6E+02 0.0034 16.6 2.9 20 155-174 18-37 (48)
480 COG5159 RPN6 26S proteasome re 22.4 4.3E+02 0.0094 21.5 9.1 138 3-143 18-166 (421)
481 PF14518 Haem_oxygenas_2: Iron 22.4 2.3E+02 0.005 18.3 5.5 13 143-155 80-92 (106)
482 smart00005 DEATH DEATH domain, 22.1 2.1E+02 0.0045 17.7 5.1 40 86-128 46-85 (88)
483 PRK14951 DNA polymerase III su 22.0 6E+02 0.013 23.1 13.2 84 124-210 187-284 (618)
484 KOG3807 Predicted membrane pro 22.0 4.7E+02 0.01 21.8 9.9 65 69-133 272-338 (556)
485 PF09986 DUF2225: Uncharacteri 21.8 3.7E+02 0.0079 20.5 8.2 53 158-210 142-199 (214)
486 PF07899 Frigida: Frigida-like 21.7 4.3E+02 0.0094 21.3 8.3 100 70-176 83-193 (290)
487 PF11491 DUF3213: Protein of u 21.6 16 0.00034 23.1 -1.3 21 101-121 19-39 (88)
488 PF00531 Death: Death domain; 21.6 1.7E+02 0.0036 17.8 3.5 39 88-129 42-80 (83)
489 PF09670 Cas_Cas02710: CRISPR- 21.4 4.9E+02 0.011 21.8 7.4 52 81-134 142-197 (379)
490 PF04762 IKI3: IKI3 family; I 21.2 7.5E+02 0.016 23.8 9.5 29 142-170 813-843 (928)
491 KOG3364 Membrane protein invol 21.1 3.2E+02 0.0068 19.5 6.2 53 82-135 47-100 (149)
492 KOG0989 Replication factor C, 21.0 4.8E+02 0.01 21.5 10.5 84 126-211 195-290 (346)
493 PRK14956 DNA polymerase III su 21.0 5.7E+02 0.012 22.4 11.1 85 125-211 185-283 (484)
494 KOG1550 Extracellular protein 20.8 6E+02 0.013 22.6 14.9 87 80-171 259-358 (552)
495 PF05664 DUF810: Protein of un 20.8 6.7E+02 0.014 23.1 8.6 82 135-216 211-307 (677)
496 PF09477 Type_III_YscG: Bacter 20.8 2.8E+02 0.0061 18.8 9.2 55 75-136 45-99 (116)
497 PF14744 WASH-7_mid: WASH comp 20.6 2.7E+02 0.0058 23.1 5.0 48 157-206 282-329 (350)
498 cd08780 Death_TRADD Death Doma 20.5 2.5E+02 0.0055 18.1 3.9 48 79-129 41-88 (90)
499 COG2256 MGS1 ATPase related to 20.5 5.5E+02 0.012 22.0 8.8 44 180-223 250-296 (436)
500 COG3294 HD supefamily hydrolas 20.5 82 0.0018 24.3 2.0 21 123-143 67-87 (269)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-36 Score=273.28 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
|..+|+++|.+|++.|++++|.++|++|.+. |+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3334444444333333333333333333332 333333333333333333333333333333333333333333333333
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++++.|.+.|+.||..+|+.||.+
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333333
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-36 Score=272.07 Aligned_cols=213 Identities=17% Similarity=0.257 Sum_probs=148.3
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|..+|++|.+. ++.|+..+||+||.+|++.|+ ..+++..+.++.. ....||..+||.+|.+|+
T Consensus 486 G~vd~A~~vf~eM~~~---------Gv~PdvvTynaLI~gy~k~G~--~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNA---------GVEANVHTFGALIDGCARAGQ--VAKAFGAYGIMRS-KNVKPDRVVFNALISACG 553 (1060)
T ss_pred cCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHCcC--HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 4455555555555544 555566777777777777774 3333333343332 223447777777777777
Q ss_pred HcCCHHHHHHHHHHHhhc-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
+.|++++|.++|++|... .|+.||..|||++|.+|+++|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 777777777777777641 2677777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+|..+|.+++..++
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777777777777777777777777777765554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.7e-35 Score=256.50 Aligned_cols=204 Identities=15% Similarity=0.188 Sum_probs=178.2
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|..+|++|.+. +..+||+||.+|++.|+ ..+++..+.+|.. ....||..||+++|.+|+
T Consensus 273 g~~~~A~~vf~~m~~~-------------~~vt~n~li~~y~~~g~--~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 273 GDIEDARCVFDGMPEK-------------TTVAWNSMLAGYALHGY--SEEALCLYYEMRD-SGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred CCHHHHHHHHHhCCCC-------------ChhHHHHHHHHHHhCCC--HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 6777787777777432 45789999999999995 4444444444443 234459999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
+.|++++|.+++.+|.+. |+.||..+||+||++|+++|++++|.++|++|. +||..|||+||.+|++.|+.++|.
T Consensus 337 ~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred hccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999995 999999999999999999999999999999996 589999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCcchhhHHHHHHHHHhhhh
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK-FDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~l~~~~~ 226 (228)
++|++|.+.|++||..||+++|.+|++.|.++++.++++.|.+ .|+.|+..+|..||..|...++
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999986 7999999999999999887664
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=248.82 Aligned_cols=214 Identities=16% Similarity=0.136 Sum_probs=188.5
Q ss_pred CccHHHHHHHHHHHHHHhccchh-------------------------hhh-hhhCcchhHHHHHHHHHhhChhcHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSII-------------------------DME-EIFSPFTSLYPLVVACSRKGFETLDSVY 54 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~-------------------------~~~-~~~~~~~~~~~ll~~~~~~g~~~~~~~~ 54 (228)
.|++++|+.+|++|.+....+.. +.. +..++..+||+||++|++.|+ ..++.
T Consensus 202 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~--~~~A~ 279 (697)
T PLN03081 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD--IEDAR 279 (697)
T ss_pred CcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC--HHHHH
Confidence 48899999999999866432221 111 444567889999999999995 44444
Q ss_pred HHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 55 FQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
..+.++ +.+|..+||++|.+|++.|+.++|.++|++|.+. |+.||..||+++|++|++.|++++|.+++++|.+
T Consensus 280 ~vf~~m-----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 280 CVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHhC-----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 444443 2348999999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred CCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhH
Q 027083 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENR 214 (228)
Q Consensus 135 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 214 (228)
.|+.||..+||+||++|++.|++++|.++|++|. +||..|||++|.+|++.|+.++|.++++.|.+.|+.||..+|
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999996 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027083 215 KNILFNLEYSAS 226 (228)
Q Consensus 215 ~~li~~l~~~~~ 226 (228)
..+|.++...+.
T Consensus 430 ~~ll~a~~~~g~ 441 (697)
T PLN03081 430 LAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHhcCCc
Confidence 999999876553
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-32 Score=245.97 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
..+||++|.+|++.|+ ..+++..+.++... ..||..||+++|.+|++.|+++.+.+++..+.+. |+.||..++|+
T Consensus 455 ~vs~~~mi~~~~~~g~--~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~na 529 (857)
T PLN03077 455 VISWTSIIAGLRLNNR--CFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNA 529 (857)
T ss_pred eeeHHHHHHHHHHCCC--HHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechH
Confidence 3455555555555553 23333333333322 3346777777777777777777777777777664 77777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
||++|+++|++++|.++|+++ .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 778888888888888888776 589999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHH-HcCCCcchhhHHHHHHHHHhhhhc
Q 027083 192 EESNDRVEALAK-KFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 192 ~~~a~~~~~~m~-~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
++++.++++.|. +.|+.|+..+|..|+..|...+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 999999999998 789999999999999999887653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-32 Score=244.35 Aligned_cols=205 Identities=17% Similarity=0.165 Sum_probs=173.3
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|..+|++|.+. +..+||++|.+|++.|+ ..+++..+.+|... ...||..||+++|.+|+
T Consensus 236 g~~~~A~~lf~~m~~~-------------d~~s~n~li~~~~~~g~--~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 236 GDVVSARLVFDRMPRR-------------DCISWNAMISGYFENGE--CLEGLELFFTMREL-SVDPDLMTITSVISACE 299 (857)
T ss_pred CCHHHHHHHHhcCCCC-------------CcchhHHHHHHHHhCCC--HHHHHHHHHHHHHc-CCCCChhHHHHHHHHHH
Confidence 5667777777766432 45689999999999885 44444455555443 34568999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
+.|+++.|.+++.+|.+. |+.||..+||+||++|+++|++++|.++|++|. .||..+||++|.+|++.|++++|.
T Consensus 300 ~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 300 LLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred hcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999985 999999999999999999999999999999986 588999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.|.+.|+.|+...|+.+|..+...+++
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999888766543
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.68 E-value=1.2e-16 Score=92.89 Aligned_cols=49 Identities=33% Similarity=0.638 Sum_probs=25.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 152 (228)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=3.1e-16 Score=91.08 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=48.7
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 188 (228)
||.++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=2.3e-12 Score=106.64 Aligned_cols=201 Identities=11% Similarity=-0.039 Sum_probs=124.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC---HHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS---VAAINCVIL 78 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~ 78 (228)
|++++|+..|+++.+.. .....+++.+...+.+.|+ ..++...+..+....+..+. ...+..+..
T Consensus 121 g~~~~A~~~~~~~l~~~----------~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG----------DFAEGALQQLLEIYQQEKD--WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred CCHHHHHHHHHHHHcCC----------cchHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 67888888888876531 1123456777777777774 33333333333332221111 123445556
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
.+.+.|+.++|...|+++.+. . +.+...+..+...|.+.|++++|.++|+++...+......+++.+..+|.+.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 666777777777777777652 1 22344666666777777777777777777765432222456677777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
+|.+.++++.+. .|+...+..+...+.+.|+.++|..+++.+.+. .|+...+..++..
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 777777777654 456556666777777777777777777776665 4666666655543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=7.2e-12 Score=103.69 Aligned_cols=207 Identities=16% Similarity=0.041 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...++.+.......... ....+..+...|.+.|+ ...+...+.+.....+. +..+++.+...+.
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~La~~~~~~g~--~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~ 152 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQ------RLLALQELGQDYLKAGL--LDRAEELFLQLVDEGDF--AEGALQQLLEIYQ 152 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCcc--hHHHHHHHHHHHH
Confidence 56666666666665532222111 01245566666666663 33333333333322222 5566666666666
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
+.|++++|.+.++.+.+. +..++ ...+..+...+.+.|++++|...|+++.+.. ..+...+..+...+.+.|++
T Consensus 153 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDY 230 (389)
T ss_pred HhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCH
Confidence 677777777777666653 32221 1234455566666677777777776665542 12344556666666666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
++|.++++++...+-.+...+++.+..+|...|+.++|...+..+.+.. |+...+..+...+.
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~ 293 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence 7777766666654322223456666666666677777766666666543 44444444444443
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.2e-11 Score=99.31 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=119.3
Q ss_pred cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
+..||.++|.+.+|-...+.+..+....+...... +..+||.+|.+-+-..+ .++..+|..+ ...||..|||
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv---~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV---YREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee---eHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHH
Confidence 35688889999988653333333333333333333 78888888876653322 7788889885 8999999999
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH-HHHHHHH----HHHCCCCC----CHH
Q 027083 111 ALIYAFGKLKKTFE----ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA-ALSVIDE----MVNAGFAP----SKE 177 (228)
Q Consensus 111 ~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~----m~~~g~~p----~~~ 177 (228)
+++++..+.|.++. |.+++.+|++-|+.|...+|..+|.-+++.+++.+ +..++.+ +.-+-++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998766 45677888999999999999999998888888744 3333333 33333444 457
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 178 TLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 178 t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.|...+..|.+..+.+.|.++++....
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 778888888888999999998887764
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.3e-11 Score=99.07 Aligned_cols=123 Identities=19% Similarity=0.271 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
...+|.++|.+.|+--..+.|.+++++-... ..+.+..+||.+|.+-.-... .+++.+|.+..++||..|||+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 4569999999999999999999999999985 889999999999976443322 78999999999999999999999
Q ss_pred HHHHccCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 027083 149 DAHLTNRDQKAA----LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 149 ~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 196 (228)
++..+.|+++.| .+++.+|++-|+.|...+|..+|.-++|.++..+..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 999999988665 578899999999999999999999999998876644
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=1.2e-09 Score=98.74 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+..+|..+..++...|++++|...|+++... .+.+...+..+...|.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4445555555555555555555555555442 12233445555555555555555555555554432 22344555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+...|++++|.++++.+...+ .++...+..+...+.+.|++++|...+..+.+.
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 55555555555555555554433 223344444445555555555555555555443
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=2.1e-09 Score=97.21 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..|..+..++.+.|+ ...+...+.+.....+. +...+..+...+...|+.++|...|+++.+. .+.+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 675 (899)
T TIGR02917 602 EAWLMLGRAQLAAGD--LNKAVSSFKKLLALQPD--SALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGL 675 (899)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 455666666666663 33333333333322222 4445555666666666666666666665542 22234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
...+.+.|++++|.++++.+.+.+ .++...+..+...+.+.|++++|.+.++.+...+ |+..++..+..++.+.|+.
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 555555555555555555554443 2344444455555555555555555555444322 2223333344444444444
Q ss_pred hhHHHHHHHHHH
Q 027083 193 ESNDRVEALAKK 204 (228)
Q Consensus 193 ~~a~~~~~~m~~ 204 (228)
++|...+..+.+
T Consensus 753 ~~A~~~~~~~l~ 764 (899)
T TIGR02917 753 AEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 15
>PF12854 PPR_1: PPR repeat
Probab=99.20 E-value=2.2e-11 Score=64.19 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=19.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 101 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.20 E-value=2.6e-11 Score=63.86 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=29.0
Q ss_pred CCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 135 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888874
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=7.9e-08 Score=73.03 Aligned_cols=133 Identities=13% Similarity=-0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhhHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PNAMSYSLLV 148 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li 148 (228)
...+..+-..+...|+.++|.+.+++.... .+.+...+..+...+...|++++|.+.+++..+.... .....+..+-
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 444455555555555555555555555441 1223334444555555555555555555555443211 1223344444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.++...|++++|.+.+++..... ..+...+..+...+...|+.++|...++...+.
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555555555555544321 112344444555555555555555555555444
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=1.8e-09 Score=93.64 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=127.0
Q ss_pred hhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhh---------------------cCCCCCCHHHHHHHHHHHHHcCC
Q 027083 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR---------------------AEPPYKSVAAINCVILGCANIWD 85 (228)
Q Consensus 27 ~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ll~~~~~~~~ 85 (228)
++.|+.+||..+|.-|+..|....+. .+-+++++. ..+-.|...||+.|+.+|...||
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccc
Confidence 77788899999999999888633333 122222111 12334678899999999999999
Q ss_pred HHH---HHHHHHHHhhc--------------------CCCCCCHHh----------HHHHHHHHHhc------C------
Q 027083 86 LDR---AYQTFEAVGSS--------------------FGLTPDIHS----------YNALIYAFGKL------K------ 120 (228)
Q Consensus 86 ~~~---a~~~~~~m~~~--------------------~~~~p~~~~----------~~~li~~~~~~------~------ 120 (228)
+.. +.+.+..+... .+.-||..+ |..+++-..++ +
T Consensus 99 li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfL 178 (1088)
T KOG4318|consen 99 LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFL 178 (1088)
T ss_pred hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHH
Confidence 765 33322222221 122333322 22222222111 1
Q ss_pred -----CHHHHHHHHHHHHhCCC-CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 121 -----KTFEASRVFEHLVSLGV-KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 121 -----~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
+.+-.+++.+. .+++. .|++.+|.+++++-..+|+++.|..++.+|++.|+..+..-|..|+-+ .++...
T Consensus 179 rqnv~~ntpvekLl~~-cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 179 RQNVVDNTPVEKLLNM-CKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHhccCCchHHHHHHH-HHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 01112222222 22333 499999999999999999999999999999999999999999999877 888899
Q ss_pred HHHHHHHHHHcCCCcchhhHHHHH
Q 027083 195 NDRVEALAKKFDIRMNTENRKNIL 218 (228)
Q Consensus 195 a~~~~~~m~~~g~~~~~~~~~~li 218 (228)
++.+...|...|+.|+.+++..-+
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHH
Confidence 999999999999999999997544
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=1e-06 Score=66.82 Aligned_cols=168 Identities=14% Similarity=0.041 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
...+..+...+.+.|+ ...+...+.+.....+. +...+..+-..+...|+.++|...+++.............+..
T Consensus 65 ~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 65 YLAYLALALYYQQLGE--LEKAEDSFRRALTLNPN--NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 4567777888888884 44444444443333332 5567778888888999999999999998873222234456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+-..+.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.+++.... ..++...+..+...+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhh
Confidence 7888999999999999999987653 235667888888999999999999999988776 34456777777888888899
Q ss_pred hhhHHHHHHHHHHc
Q 027083 192 EESNDRVEALAKKF 205 (228)
Q Consensus 192 ~~~a~~~~~~m~~~ 205 (228)
.+.+..+.+.+.+.
T Consensus 219 ~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 219 VAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999887776543
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.98 E-value=1.1e-08 Score=81.04 Aligned_cols=155 Identities=13% Similarity=0.042 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~l 147 (228)
+...+..++..+...++++.+.+++++........++...|..+-..+.+.|+.++|.+.+++..+. .| |....+.+
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l 186 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNAL 186 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 5567788888899999999999999997764345678888899999999999999999999998876 45 47788899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
+..+...|+.+++.+++....+.. ..|...+..+-.++...|+.++|...++...+..-. |+.....+...|.-.++.
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccc
Confidence 999999999999888888877654 445567788888999999999999999998774432 677777777777766653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.97 E-value=9.5e-07 Score=78.12 Aligned_cols=142 Identities=6% Similarity=-0.077 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 69 SVAAINCVILGCANIWDLDR----AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+...+..+-..+...|+.++ |...|++.... -+.+...+..+-..+.+.|++++|...+++..+... -+...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 44455555556666666554 56666665541 122344566666666666666666666666655431 234445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET-LKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 215 (228)
..+-.++.+.|++++|.+.++.+... .|+... +..+..++...|+.++|...++...+..-.-....|.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 55566666666666666666665543 343322 2223445566666666666666665544332333443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.95 E-value=8.6e-07 Score=78.37 Aligned_cols=184 Identities=9% Similarity=-0.068 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
.+..+...+.+.|+ ...+...+.+.....+. +...+..+...+...|+.++|...++.+... ...+. ..+..+
T Consensus 112 a~~~la~~l~~~g~--~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~~-~a~~~~- 184 (656)
T PRK15174 112 DVLLVASVLLKSKQ--YATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPRG-DMIATC- 184 (656)
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCCH-HHHHHH-
Confidence 45555666666663 34444444444433332 4556666666666677777777766666542 21111 122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
..+.+.|++++|...++.+.+....++...+..+..++.+.|+.++|.+.+++..... ..+...+..+-..+...|+.+
T Consensus 185 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 2356667777777777666554322334444445566666777777777776666532 223455555666666667666
Q ss_pred h----HHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 194 S----NDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 194 ~----a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
+ |...++...+..-. +...+..+-..+...++
T Consensus 264 eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQ 299 (656)
T ss_pred hhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCC
Confidence 4 56666666654321 34444444444444433
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.88 E-value=3.7e-06 Score=74.03 Aligned_cols=129 Identities=10% Similarity=-0.086 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
+|..+...+...|+ ...+...+.+.....+. +..+|..+-..+...|+.++|...|++.... .+.+...+..+-
T Consensus 367 ~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 367 SYIKRASMNLELGD--PDKAEEDFDKALKLNSE--DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 44455555555553 33333333333222222 4456666666666666666666666666542 122344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
..+.+.|++++|...|++..+.. ..+...|+.+-..+...|++++|.+.|+....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 66666666666666666655432 22355566666666666666666666665543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.84 E-value=3.2e-06 Score=74.42 Aligned_cols=189 Identities=10% Similarity=-0.042 Sum_probs=143.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
+++++|...|+...+..... ......|+.+-..+...| +..++...+.+.....+. +...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~-------~~~a~a~~~lg~~~~~~g--~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~ 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLG-------EKEAIALNLRGTFKCLKG--KHLEALADLSKSIELDPR--VTQSYIKRASMNL 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHH
Confidence 35667777777766542110 111245777777777888 455666566555544433 5668888888889
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|...|++.... -..+...|..+-..+...|++++|...|++..+.. ..+...+..+-..+.+.|+.++|+
T Consensus 377 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998763 23356788889999999999999999999988764 235677788888899999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 162 SVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 162 ~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
..|++.... .| +...++.+-..+...|++++|...++......
T Consensus 454 ~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 454 ATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999988763 35 46888888899999999999999999988754
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.83 E-value=6.9e-09 Score=54.89 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=20.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
|||++|++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 26
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.81 E-value=7e-09 Score=54.87 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 140 (228)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=1.1e-07 Score=75.46 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNA 111 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 111 (228)
..+...+..+.+.+. .......+...........+...|..+-..+.+.|+.++|.+.+++..+. .|+ ....+.
T Consensus 111 ~~l~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~ 185 (280)
T PF13429_consen 111 RYLLSALQLYYRLGD--YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNA 185 (280)
T ss_dssp -------H-HHHTT---HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHH
T ss_pred chhhHHHHHHHHHhH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHH
Confidence 345667777777774 33333333332233323347888888889999999999999999999873 464 778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
++..+...|+.+++..+++...+.. ..|+..+..+-.+|...|+.++|..+|++..... +.|..+...+.+++...|+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccc
Confidence 9999999999999999998887664 5677788999999999999999999999977632 3477888888999999999
Q ss_pred hhhHHHHHHHHH
Q 027083 192 EESNDRVEALAK 203 (228)
Q Consensus 192 ~~~a~~~~~~m~ 203 (228)
.++|.++.....
T Consensus 264 ~~~A~~~~~~~~ 275 (280)
T PF13429_consen 264 KDEALRLRRQAL 275 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999877654
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.80 E-value=3.9e-08 Score=85.56 Aligned_cols=156 Identities=16% Similarity=0.159 Sum_probs=102.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----------------------CCCCCCHHhHHHHHHHHHhcC
Q 027083 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS-----------------------FGLTPDIHSYNALIYAFGKLK 120 (228)
Q Consensus 64 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------------------~~~~p~~~~~~~li~~~~~~~ 120 (228)
....||.+||..+|.-||..|+++.|- +|..|+.+ .--.|..-||++|..+|.++|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 334459999999999999999999999 88877653 012467788999999999999
Q ss_pred CHHH---HHHHHHHHHh----CCCC-----------------CcHhh----------HHHHHHHHHc------cCC----
Q 027083 121 KTFE---ASRVFEHLVS----LGVK-----------------PNAMS----------YSLLVDAHLT------NRD---- 156 (228)
Q Consensus 121 ~~~~---a~~~~~~m~~----~g~~-----------------p~~~t----------~~~li~~~~~------~g~---- 156 (228)
++.. .++.+..... .|+. ||..+ |..+++-..+ .+-
T Consensus 98 Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 98 DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 8654 3332222211 1221 33322 1111221100 010
Q ss_pred -------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 157 -------QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 157 -------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
..-.+++....+...-.|+..+|.+++++-.-.|+.+.|..++..|.+.|+..+.+.+..++-+
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 0111222222221111599999999999999999999999999999999999999988888755
No 29
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.78 E-value=1.8e-07 Score=77.22 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSF-GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+.....++++.+....+++.+..++...+... ....-..|.+++|+.|.+.|..+.+..+++.=...|+.||..|||.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 77788888999998899999999988887642 22234556689999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
|+.+.+.|++..|.+++.+|..++...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998888889988888887765
No 30
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.75 E-value=1.7e-08 Score=53.09 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=17.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP 174 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 174 (228)
|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=98.72 E-value=2.1e-05 Score=68.40 Aligned_cols=148 Identities=9% Similarity=-0.084 Sum_probs=108.1
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
...+.....+.....|. +...+..+-..+...|+.++|...|++..+. .|+ ...+..+-..+...|++++|...
T Consensus 320 ~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATELDHN--NPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555554444443 6777877777788899999999999999873 354 55677788889999999999999
Q ss_pred HHHHHhCCCCCcH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 129 FEHLVSLGVKPNA-MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 129 ~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+++..+.. |+. ..+..+...+...|+.++|.+.+++..... .| +...+..+-.++...|+.++|...+..+...
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99988764 443 233344445667889999999998877543 34 3445666677788899999999998776543
No 32
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.71 E-value=2.6e-08 Score=52.39 Aligned_cols=33 Identities=39% Similarity=0.604 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 139 (228)
.|||++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666665
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.69 E-value=1.5e-05 Score=73.13 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|+.++|...+++..+ ..|+...|..+-..+.+.|+.++|...|++..+.. .-+...++.+-..+...|+.++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44777777777777654 24566666667677777777777777777766553 224455555556677777777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 162 SVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 162 ~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+.+++..+. .| +...+..+-.++...|++++|...++...+..
T Consensus 664 ~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777666553 33 34566666666777777777777777666544
No 34
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.69 E-value=4.2e-07 Score=60.41 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSLGV-KPNAMSYSLLVDAHLTNR--------DQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
...|..+...+++.....+|+.+++.|+ .|+..+||.++.+-++.. ++-..+.++++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445555555777777777777777777 777777777777766643 2344566777788778888888888
Q ss_pred HHHHHHHh
Q 027083 181 KVRRRCVR 188 (228)
Q Consensus 181 ~li~~~~~ 188 (228)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88777654
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.67 E-value=1.3e-05 Score=68.07 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=153.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCc-chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSP-FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
|.+|-|.+.+++..+. -|. ...||.|-+++-..|+ +.++...+.+-..-.+. -....+.|=+.+
T Consensus 300 G~ldlAI~~Ykral~~-----------~P~F~~Ay~NlanALkd~G~--V~ea~~cYnkaL~l~p~--hadam~NLgni~ 364 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALEL-----------QPNFPDAYNNLANALKDKGS--VTEAVDCYNKALRLCPN--HADAMNNLGNIY 364 (966)
T ss_pred ccHHHHHHHHHHHHhc-----------CCCchHHHhHHHHHHHhccc--hHHHHHHHHHHHHhCCc--cHHHHHHHHHHH
Confidence 5666677666665544 223 3478999999998884 45554444444444444 345788888999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HhhHHHHHHHHHccCCHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN-AMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 158 (228)
.+.|.++.|.++|..... +.|. ...+|.|-..|-..|.+++|..-|++..+- .|+ ...|+.+=..|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHH
Confidence 999999999999988765 4454 457888999999999999999999988764 554 567888888899999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 159 AALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
.|.+.+.+.+. +.|. ...++.|-..|...|++.+|.+-++...+..-. -+..|..+++++...-.|
T Consensus 440 ~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 440 AAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcc
Confidence 99988876665 5565 578888999999999999999999988774432 356788999999887776
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.57 E-value=9.7e-05 Score=67.94 Aligned_cols=174 Identities=9% Similarity=-0.060 Sum_probs=117.6
Q ss_pred HHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHh
Q 027083 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSYNALIYAFGK 118 (228)
Q Consensus 40 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 118 (228)
..+.+.|+ ...+...+.+.... ++ +...+..+-..+.+.|+.++|...+++..+. . |+. ..+..+.....+
T Consensus 517 ~al~~~Gr--~eeAi~~~rka~~~-~p--~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~--P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 517 YQAYQVED--YATALAAWQKISLH-DM--SNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G--LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHCCC--HHHHHHHHHHHhcc-CC--CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CccHHHHHHHHHHHHh
Confidence 33346664 44444444444332 22 2334556666778889999999999988763 3 333 233333344455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDR 197 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~ 197 (228)
.|++++|...+++..+. .|+...|..+-..+.+.|+.++|++.+++.... .|+ ...++.+-..+...|+.++|..
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999988765 577888999999999999999999999887764 454 4566666668888999999999
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 198 VEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 198 ~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
.+....+..-. +...+..+-.++...++
T Consensus 665 ~l~~AL~l~P~-~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 665 MLERAHKGLPD-DPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 98888875432 44455555555544433
No 37
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.56 E-value=1e-07 Score=48.91 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
|||++|++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444444
No 38
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.56 E-value=2.7e-06 Score=70.47 Aligned_cols=121 Identities=10% Similarity=0.040 Sum_probs=105.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 027083 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 101 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 178 (228)
+...+......+++.+....+++.+..++...... ....-..|..++|..|...|..+.+.++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45668888999999999999999999999888765 3334456677999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 179 LKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
||.|++.+.+.|++..|.++...|...+...++.++.-.+.++
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 9999999999999999999999999888888888777666554
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.55 E-value=0.00011 Score=69.31 Aligned_cols=187 Identities=13% Similarity=0.034 Sum_probs=126.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHH-----
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV----- 76 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 76 (228)
|++++|...|++..+.. +.....+..|-..+.+.|+ ..++...+.+.....+..++...|..+
T Consensus 283 g~~~~A~~~l~~aL~~~----------P~~~~a~~~Lg~~~~~~g~--~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN----------PKDSEALGALGQAYSQQGD--RARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred CCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 67788888887776652 1123467788889999885 444444444444333322222223222
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HhhHHHHH
Q 027083 77 -------ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN-AMSYSLLV 148 (228)
Q Consensus 77 -------l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li 148 (228)
-..+.+.|++++|...|++.... -..+...+..+-..+...|++++|++.|++..+.. |+ ...+..+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~ 426 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 23456889999999999999873 23345567778889999999999999999987653 33 33333222
Q ss_pred ------------------------------------------HHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 027083 149 ------------------------------------------DAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRR 185 (228)
Q Consensus 149 ------------------------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~ 185 (228)
..+...|++++|.+.+++..+. .|+ ...+..+...
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 2344578888888888887763 454 5667778888
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 027083 186 CVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g 206 (228)
+.+.|+.++|...++.+.+..
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999988643
No 40
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.54 E-value=1.1e-07 Score=48.77 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGV 137 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 137 (228)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.51 E-value=0.00014 Score=60.68 Aligned_cols=200 Identities=9% Similarity=-0.013 Sum_probs=124.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHH--HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLY--PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 79 (228)
|+.++|...+.++.+... +..... .....+...| +...+.....+.....|- +......+...
T Consensus 132 g~~~~A~~~l~~A~~~~~-----------~~~~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~--~~~al~ll~~~ 196 (398)
T PRK10747 132 GDEARANQHLERAAELAD-----------NDQLPVEITRVRIQLARN--ENHAARHGVDKLLEVAPR--HPEVLRLAEQA 196 (398)
T ss_pred CCHHHHHHHHHHHHhcCC-----------cchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 677888888887765421 111111 1234555555 344455455554444443 56677777777
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCC-----------------------------------------CCHHhHHHHHHHHHh
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLT-----------------------------------------PDIHSYNALIYAFGK 118 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~-----------------------------------------p~~~~~~~li~~~~~ 118 (228)
|...|+++.|.+++..+.+. +.. .+......+...+.+
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 77777777777777777653 222 122333455667778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDR 197 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~ 197 (228)
.|+.++|.+++++..+. .||... .++.+....++++++.+..+...+. .|+ .....++-+.|.+.+++++|+.
T Consensus 276 ~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888887764 344421 1334444557888888887776653 344 4556667777888888888888
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 198 VEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 198 ~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
.++...+. .|+...+..+-..++-.+
T Consensus 350 ~le~al~~--~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 350 AFRAALKQ--RPDAYDYAWLADALDRLH 375 (398)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHcC
Confidence 88888765 477777777766666544
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=7.7e-05 Score=62.23 Aligned_cols=189 Identities=12% Similarity=-0.016 Sum_probs=128.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|+|++|..++..+.+.....+...... ...+|..++....+.. +.......+.......+. +......+-..+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l--~~~a~~~l~~~~~~~~--~~~~l~~~w~~lp~~~~~--~~~~~~~~A~~l~ 274 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAML--EQQAWIGLMDQAMADQ--GSEGLKRWWKNQSRKTRH--QVALQVAMAEHLI 274 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHhC--CHHHHHHHHHHHH
Confidence 677788888888777633222110000 0012333333322222 222222222222222222 6678888899999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|+.++|..++++..++ .||.. -.++.+.+..++.+++.+..+...+.. +-|+....++=..|.+.|++++|.
T Consensus 275 ~~g~~~~A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998764 34442 123444556699999999999988764 235667888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+.|+...+ ..|+..++..+-..+...|+.++|.+++..-..
T Consensus 349 ~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 349 LAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99998886 469999999999999999999999999886544
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=98.48 E-value=0.00012 Score=63.65 Aligned_cols=161 Identities=11% Similarity=-0.067 Sum_probs=111.5
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~ 110 (228)
...+..+-..+...|+ ..++...+.+.....|. +...+..+-..+...|+.++|...+++..+- .|+.. .+.
T Consensus 338 ~~a~~~lg~~~~~~g~--~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~ 410 (553)
T PRK12370 338 PQALGLLGLINTIHSE--YIVGSLLFKQANLLSPI--SADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGI 410 (553)
T ss_pred HHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHH
Confidence 3456667677777774 55555555555554544 6667888888899999999999999999863 44432 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-ETLKKVRRRCVR 188 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~ 188 (228)
.+...+...|++++|...+++..+.. .| ++..+..+-.++...|+.++|.+.+.++... .|+. ...+.+...+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 44555777899999999999987653 24 4455777778888999999999999886543 4443 334445556677
Q ss_pred cCChhhHHHHHHHHHH
Q 027083 189 EMDEESNDRVEALAKK 204 (228)
Q Consensus 189 ~~~~~~a~~~~~~m~~ 204 (228)
.|+ .+...++.+.+
T Consensus 488 ~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 488 NSE--RALPTIREFLE 501 (553)
T ss_pred cHH--HHHHHHHHHHH
Confidence 774 66665555544
No 44
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.47 E-value=6.1e-06 Score=54.98 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CCCHHhHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCcHhh
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGL-TPDIHSYNALIYAFGKLKK--------TFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~g~~p~~~t 143 (228)
-...|..|...++......+|+.+++. |+ .|+..+||.++++.++... +-++..+|++|...+++|+..|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777779999999999999995 99 9999999999999887643 4557789999999999999999
Q ss_pred HHHHHHHHHc
Q 027083 144 YSLLVDAHLT 153 (228)
Q Consensus 144 ~~~li~~~~~ 153 (228)
||+++.++.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=0.00021 Score=67.43 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=117.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...+++..+... .+...+..+...|.+.|+ ..++...+.+.....+. +...+..+-..+.
T Consensus 475 g~~~eA~~~~~~Al~~~P----------~~~~~~~~LA~~~~~~G~--~~~A~~~l~~al~~~P~--~~~~~~a~al~l~ 540 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDP----------GSVWLTYRLAQDLRQAGQ--RSQADALMRRLAQQKPN--DPEQVYAYGLYLS 540 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence 677788887777665521 112345567777888774 44444444443333332 2222222222233
Q ss_pred HcCCHHHHHHHHHHHhhcC--------------------------------------CCCCCHHhHHHHHHHHHhcCCHH
Q 027083 82 NIWDLDRAYQTFEAVGSSF--------------------------------------GLTPDIHSYNALIYAFGKLKKTF 123 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~--------------------------------------~~~p~~~~~~~li~~~~~~~~~~ 123 (228)
..++.++|...++.+.... ...++...+..+-..+.+.|+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 3444444444443322100 01234445666777888999999
Q ss_pred HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 124 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
+|...|++..+.. ..+...+..+...+...|+.++|.+.++..... .|+ ..++..+-.++...|+.++|.++++.+
T Consensus 621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999888764 336788888999999999999999999876543 443 455666777788889999999999988
Q ss_pred HHcC
Q 027083 203 KKFD 206 (228)
Q Consensus 203 ~~~g 206 (228)
....
T Consensus 698 l~~~ 701 (1157)
T PRK11447 698 IPQA 701 (1157)
T ss_pred hhhC
Confidence 8754
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.44 E-value=0.00029 Score=63.73 Aligned_cols=190 Identities=8% Similarity=-0.100 Sum_probs=128.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCC--CCHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPY--KSVAAINCVILG 79 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~ 79 (228)
|+.++|...|+.+.+.. -..|...-..+...|.+.|+. ..+...+.+.....+.. ........+..+
T Consensus 251 g~~~eA~~~~~~ll~~~---------~~~P~~a~~~la~~yl~~g~~--e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 251 DRYKDVISEYQRLKAEG---------QIIPPWAQRWVASAYLKLHQP--EKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred hhHHHHHHHHHHhhccC---------CCCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 45566777776665541 100111112246678888853 33333333333322211 123456666778
Q ss_pred HHHcCCHHHHHHHHHHHhhcCC----------CCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFG----------LTPD---IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
+.+.|+.++|...++.+..... -.|+ ...+..+...+...|+.++|+.+++++.... +-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8899999999999999886310 1123 1244567778899999999999999987764 346778899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+...+...|++++|++.+++... +.|| ...+......+.+.|++++|+.+++.+.+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999997776 3476 456666666788889999999999998873
No 47
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.38 E-value=6.8e-06 Score=61.28 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh
Q 027083 69 SVAAINCVILGCANI-----WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 143 (228)
+..+|..++..|.+. |.++-....+..|.+ .|+.-|..+|+.||+.+=+..-. |.. .
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fv----------------p~n-~ 107 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFV----------------PRN-F 107 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcc----------------ccc-H
Confidence 666666666666533 555555566666666 56666666666666665542210 000 0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+-++..-| -.+.+-|++++++|...|+-||..|+..|++.|.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000000 12234455666666666666666666666666655543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.33 E-value=0.00058 Score=57.22 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=60.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK---ET 178 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t 178 (228)
+...+-.+...+...|+.++|.+++++..+. .||... .....-.....++.+.+.+.++...+. .|+. ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 4445555566666677777777777666654 233331 111111222345566666666554432 3332 33
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 179 LKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
..++-..+.+.|++++|.+.++........|+.+.+..+-.-+.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 34555566667777777777765455555566666555544444
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.33 E-value=0.00026 Score=57.19 Aligned_cols=194 Identities=13% Similarity=0.036 Sum_probs=134.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|+|.+.+.+..+|.++.-......... ...+|+.+++-....+ .................. +...-.+++.-+.
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~l--e~~a~~glL~q~~~~~--~~~gL~~~W~~~pr~lr~--~p~l~~~~a~~li 274 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARL--EQQAWEGLLQQARDDN--GSEGLKTWWKNQPRKLRN--DPELVVAYAERLI 274 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHH--HHHHHHHHHHHHhccc--cchHHHHHHHhccHHhhc--ChhHHHHHHHHHH
Confidence 778888888888888743333221111 1246888887776655 233322233333322222 3345566788888
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
..|+-++|.++.++..++ +..|+. ...-.+.+.++.+.-.+..+.-.+ .+- ++-.+.+|=..|.+.+.|.+|
T Consensus 275 ~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 275 RLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHH
Confidence 999999999999999885 777772 222345667777777777766443 333 447788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
.+.|+.-. ...|+..+|+.+-+++.+.|+.+.|.++.+...-.-..|+
T Consensus 348 ~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 348 SEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99998444 4689999999999999999999999999888765444443
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.30 E-value=0.00012 Score=62.19 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=143.8
Q ss_pred ccHHHHHHHHHHHHHHhccch-hhhhhhhCcchhHHHHHHHHHhhChhcHHHH-----HHHHhchhhcCCCCCCHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSI-IDMEEIFSPFTSLYPLVVACSRKGFETLDSV-----YFQLENLSRAEPPYKSVAAINC 75 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
++.++|..+++++.+.....- .+.. ....+++.|-..|.+.|+.+.+.. .....+..+...+. -...++.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~-v~~~l~~ 330 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE-VAAQLSE 330 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH-HHHHHHH
Confidence 678899999998877643111 1110 113467788888999995322222 22222222222221 2334566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCC--CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-cHh
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFG--LTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSL-----G-VKP-NAM 142 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~ 142 (228)
+...|+..++.++|..++....+... ..++ ..+++.|=..|.+.|.+++|+.+|++..+. | ..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 77778889999999998887654211 2222 358999999999999999999999986443 1 122 255
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCcc
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMV----NAGF-APS-KETLKKVRRRCVREMDEESNDRVEALAKKF------DIRMN 210 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~~ 210 (228)
..|-|-..|.+.+..++|.++|.+-+ ..|. .|| ..+|..|...|.+.|+++.|..+.+.+.+. ...|+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 67888889999999999998887754 3332 344 488999999999999999999998877742 34566
Q ss_pred hhhHHHHHHHH
Q 027083 211 TENRKNILFNL 221 (228)
Q Consensus 211 ~~~~~~li~~l 221 (228)
..........+
T Consensus 491 ~~~~~~~~~~~ 501 (508)
T KOG1840|consen 491 VEDEKLRLADL 501 (508)
T ss_pred hhHHHHhhhHH
Confidence 66665554443
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.30 E-value=0.00087 Score=53.66 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 177 ETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 177 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
..|..+-..+...|+.++|...++...+.+.. +..-+...+.-++.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~~~ 282 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHH
Confidence 45666677778889999999999998877643 55555554444443
No 52
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.27 E-value=2.8e-05 Score=58.05 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=78.4
Q ss_pred CcchhHHHHHHHHHhhC---hhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH
Q 027083 30 SPFTSLYPLVVACSRKG---FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106 (228)
Q Consensus 30 ~~~~~~~~ll~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 106 (228)
.+-.+|..+|+.|.+.. +...+-.+..+..|.. .....|..+|+.||+.+=+..- .|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~f-----------------vp~n 106 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKF-----------------VPRN 106 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCc-----------------cccc
Confidence 34568999999999874 2455555555555554 3344599999999987765221 1211
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVN 169 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~ 169 (228)
. +-++..-| ..+-+-|.+++++|...|+.||..|+..+++.+++.+.+ .+..++.-.|.+
T Consensus 107 ~-fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 107 F-FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred H-HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 11111111 123466899999999999999999999999999998875 455555555554
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.26 E-value=0.0013 Score=59.64 Aligned_cols=181 Identities=11% Similarity=-0.025 Sum_probs=121.3
Q ss_pred HHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHH
Q 027083 40 VACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP--DIHSYNALIYAFG 117 (228)
Q Consensus 40 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~ 117 (228)
..+.+.|+ ..++...+..+....++.|+- .--.+-..|...|++++|...|++........+ .......+..++.
T Consensus 245 ~~Ll~~g~--~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 245 GALLARDR--YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHhhh--HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 34455563 444444444444443322332 122245688899999999999999876311111 1345667777899
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCc---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 118 KLKKTFEASRVFEHLVSLGV-----------KPN---AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
+.|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... .-+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999886521 123 2345677788889999999999999987642 33467888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcc-hhhHHHHHHHHHhhhh
Q 027083 184 RRCVREMDEESNDRVEALAKKFDIRMN-TENRKNILFNLEYSAS 226 (228)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~l~~~~~ 226 (228)
..+...|+.++|++.++...+.. |+ ...+..........++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCC
Confidence 89999999999999999888755 44 3333333334443333
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.26 E-value=0.00037 Score=58.42 Aligned_cols=131 Identities=9% Similarity=-0.061 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhH-HHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCcH---h
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY-NALIYA--FGKLKKTFEASRVFEHLVSLGVKPNA---M 142 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~---~ 142 (228)
+...+-.+...+...|+.+.|.+++++..++ .||.... -.++.. ....++.+.+.+.++...+. .|+. .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ 336 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCC 336 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHH
Confidence 6778888889999999999999999999874 3444321 013333 34457788899999887665 3444 4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
...++=..+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++++.-..
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45577788889999999999999655555689999999999999999999999999987543
No 55
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.25 E-value=3.5e-05 Score=65.63 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=96.9
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
...+...+++-....|-.|+ .||.|-+++-..|++.+|.+.+++... +.|+ ....|.|-..|...|.++.|.++
T Consensus 302 ldlAI~~Ykral~~~P~F~~--Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPD--AYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred HHHHHHHHHHHHhcCCCchH--HHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 33344444444444444333 777777777777888888888777765 2343 34667777778888888888887
Q ss_pred HHHHHhCCCCCc-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 129 FEHLVSLGVKPN-AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 129 ~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
|.....- .|. ...+|.|-..|-.+|+.++|...+++..+ ++|+ ...|+.+=..|-..|+++.|.+.+...+.
T Consensus 377 y~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 377 YLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 7765543 333 45577777778888888888887776554 6676 35666666667777777777777766554
No 56
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.20 E-value=0.00084 Score=60.77 Aligned_cols=179 Identities=16% Similarity=0.058 Sum_probs=109.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|+.+.|+..|++..+...... ..-..++..++..|. ...+.....+... ..+. +....-.+-..+.
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~----------~av~dll~l~~~~G~--~~~A~~~~eka~~-p~n~-~~~~llalA~ly~ 113 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQS----------GQVDDWLQIAGWAGR--DQEVIDVYERYQS-SMNI-SSRGLASAARAYR 113 (822)
T ss_pred CCHHHHHHHHHHHHhhCccch----------hhHHHHHHHHHHcCC--cHHHHHHHHHhcc-CCCC-CHHHHHHHHHHHH
Confidence 677788888877766521110 011266777777774 4444444444331 1111 2223333344667
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|.++|+++.+. -+-|...+..++..|...+..++|.+.++.+... .|+...+-.++..+...++..+|+
T Consensus 114 ~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 114 NEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 778888888888888763 2223455567777888888888888888887765 566666644444443345555588
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 162 SVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 162 ~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
+.++++.+.. | +...+..++.++.+.|-...|.++..
T Consensus 190 ~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 190 QASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 8888887753 5 45666777778888877777665543
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00064 Score=56.16 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=135.0
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...+++.......... ..||.=+. +-+.| .+.+++..+-++...... +..+.-.+-+.|-
T Consensus 504 gd~dka~~~ykeal~ndasc~e---------alfniglt-~e~~~--~ldeald~f~klh~il~n--n~evl~qianiye 569 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTE---------ALFNIGLT-AEALG--NLDEALDCFLKLHAILLN--NAEVLVQIANIYE 569 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHH---------HHHHhccc-HHHhc--CHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 7888888888876544211111 12332222 22333 344444444444444332 5666667777888
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
...+...|.+++.+..+ -++.|....+-|-+.|-+.|+-.+|.+.+-+--+. +.-|..|..-|-.-|...--++++.
T Consensus 570 ~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHH
Confidence 88888999998888765 46667888888989999999999888877665443 4557788888888888888889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCcchhhHHHHHH
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCV-REMDEESNDRVEALAKKFDIRMNTENRKNILF 219 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 219 (228)
..|+... =+.|++.-|..+|.+|. |.|+++.|..++....+. +.-+....+-+++
T Consensus 647 ~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 647 NYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 8887543 37899999998887765 459999999988886543 4445555555554
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.10 E-value=0.0021 Score=48.62 Aligned_cols=126 Identities=16% Similarity=0.023 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
+.|.-=-.+|..|.+++|..-|++......+.--..||..+--+..+.|.++.|+..|++-.+... -...+.-.+....
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~ 183 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLH 183 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHH
Confidence 333333444444455555555554444322222333444444444445555555555544443321 1223333444444
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
.+.|+.-.|...++.....+. ++..+....|+.-.+.|+.+.+.+.-
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 444444444444443333332 44444444444444445544444433
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.0023 Score=50.78 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=115.0
Q ss_pred HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHH
Q 027083 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNAL 112 (228)
Q Consensus 37 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~l 112 (228)
.|-.-|.++|..+.++..+..-.-.+.. -...--.|+..|-...+|++|.++-++..+ .+-++.. ..|+-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~ef----a~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEF----AEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHH
Confidence 4666677778655555544332211111 234777889999999999999999998877 3544432 245566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
-..+.-..+++.|..++....+..-+ .+..--.+=......|+.+.|.+.++...+++..--..+...|..+|...|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 66666778888888888887765321 23333334456677899999999998888877666678888888999999999
Q ss_pred hhHHHHHHHHHHcCCC
Q 027083 193 ESNDRVEALAKKFDIR 208 (228)
Q Consensus 193 ~~a~~~~~~m~~~g~~ 208 (228)
++....+..+.+..-.
T Consensus 266 ~~~~~fL~~~~~~~~g 281 (389)
T COG2956 266 AEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHHHccCC
Confidence 8888887777664433
No 60
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00016 Score=57.41 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
.+|..+|+..-+.+.++.|+.+|.+..+...+....+...++|.-++ .++.+.|.++|+...+. +..+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 46777777777777788888888887764334455555555554332 34566688888776654 34566777777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSK----ETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+.+.|+.+.|..+|++.... .|.. ..|...++-=.+.|+++.+..+...+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788888888888776644 2333 47777777777778887777777776653
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.00032 Score=60.00 Aligned_cols=184 Identities=13% Similarity=0.041 Sum_probs=120.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
+..++|+.+|+.+.+....... ....|.+.+=-+-+.- +..+....-+. ..+- ...+|+++=++|.
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~rv~-------~meiyST~LWHLq~~v----~Ls~Laq~Li~-~~~~--sPesWca~GNcfS 432 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYRVK-------GMEIYSTTLWHLQDEV----ALSYLAQDLID-TDPN--SPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHhhcccccc-------chhHHHHHHHHHHhhH----HHHHHHHHHHh-hCCC--CcHHHHHhcchhh
Confidence 4567888888888776432222 2345666654443322 22211111111 1222 4569999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH---HHHHHHccCCH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL---LVDAHLTNRDQ 157 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~---li~~~~~~g~~ 157 (228)
-.++.+.|.+.|++... +.| .+++|+.+=.-+....++|.|+..|+... ..|+..||+ +-..|.+.++.
T Consensus 433 LQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchh
Confidence 99999999999998764 566 67788877777778888888888887765 456666654 44567788888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 158 KAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
+.|+-.|+...+ +-| +.+....+-..+-+.|..++|.++++......-+
T Consensus 506 e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 506 EFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 888888876554 444 3444445555667778888888888887765543
No 62
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.08 E-value=0.0024 Score=57.89 Aligned_cols=171 Identities=12% Similarity=0.009 Sum_probs=119.9
Q ss_pred hCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---
Q 027083 29 FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAE----PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFG--- 101 (228)
Q Consensus 29 ~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--- 101 (228)
..|..+--.+.++|...+.+..+..+.. ...... ...++......|..++...+++++|..+.+.+.+...
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~--~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILS--SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHH--HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 3344455568899998886544444333 222211 1112444467889999999999999999999987311
Q ss_pred ---------CCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 102 ---------LTPDIHS-YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 102 ---------~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
..||-.. +..++..+.-.|+..+|++.++++.... +-|.-....+-+.+...|.+..|++.++.....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l- 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL- 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-
Confidence 1233333 3445677889999999999999997664 347888889999999999999999999655543
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 172 FAPS-KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 172 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.|+ ..+.......+-..+++.+|..+.+.+..
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 554 46666677777788999999888877655
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0015 Score=54.16 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.++|+|+.+|+++.+.. .+.- .+.++|+.++-.--.... .-++....... ...| .|.+++-+.|
T Consensus 276 rDfD~a~s~Feei~knD-PYRl------~dmdlySN~LYv~~~~skLs~LA~~v~~id------KyR~--ETCCiIaNYY 340 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKND-PYRL------DDMDLYSNVLYVKNDKSKLSYLAQNVSNID------KYRP--ETCCIIANYY 340 (559)
T ss_pred hhHHHHHHHHHHHHhcC-CCcc------hhHHHHhHHHHHHhhhHHHHHHHHHHHHhc------cCCc--cceeeehhHH
Confidence 47899999999997772 2221 123455544432211110 01111111111 1111 2555555666
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------------------
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSLGV---------------------- 137 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------------------- 137 (228)
+-.++.++|...|+...+ +.|... .|+.+=.-|....+...|..-++...+-..
T Consensus 341 Slr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 666666666666665543 233332 233333345555555555555444443321
Q ss_pred -----------CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 138 -----------KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 138 -----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
+-|+..|.+|=++|.+-+++++|+..|......|-. +...+..|-+.+-+.++.++|.+.+..-+
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 235566666666666666666666666655544421 34555566666666666666665554433
No 64
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00037 Score=57.64 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+-+.-..++..+...++++.|..+|+++.++ . |+.. -.+.+.+...++-.+|.+++++..+.. +.|......-.
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa 241 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRER-D--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQA 241 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhc-C--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455566777777889999999999999985 3 6644 457888888999999999999988653 33666677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK-ETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
..|.+.++.+.|..+.++... ..|+. .+|..|..+|...|+++.|.....-+
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 778899999999999998887 56776 69999999999999999998776543
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.02 E-value=0.003 Score=48.59 Aligned_cols=169 Identities=15% Similarity=0.065 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS-VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSYN 110 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~ 110 (228)
..+..+...+.+.|+ ...+...+.+.....+..|. ..++..+-.++...|+++.|...+++..+...-.|.. ..+.
T Consensus 34 ~~~~~~g~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 34 EELYEEAKEALDSGD--YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345667777777774 44454455544444433221 2466677788888999999999999998642112221 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCcHh-hHH-----------------HHHHHHHccCCHHHHHHHH
Q 027083 111 ALIYAFGKL--------KKTFEASRVFEHLVSLGVKPNAM-SYS-----------------LLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 111 ~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-t~~-----------------~li~~~~~~g~~~~a~~~~ 164 (228)
.+-.++.+. |+.++|.+.|+...+. .|+.. .+. .+-..+.+.|++++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333444443 6788899999988765 34432 211 2345567789999999999
Q ss_pred HHHHHCCC-CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 165 DEMVNAGF-AP-SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 165 ~~m~~~g~-~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
++.....- .| ....+..+..++...|+.++|..+++.+.+.
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88775421 23 3577888889999999999999988777654
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.99 E-value=4.5e-05 Score=60.70 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=111.7
Q ss_pred HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-
Q 027083 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA- 115 (228)
Q Consensus 37 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~- 115 (228)
.++.+..-....+..+++....+. . +.......+..+.+.++++.|.+.++.|.+. ..|. +...+..+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~----~---~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~-~l~qLa~aw 173 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG----G---SLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDS-ILTQLAEAW 173 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT----T---CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc----C---cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcH-HHHHHHHHH
Confidence 344444333333566666554431 2 6778888999999999999999999999863 3443 34344444
Q ss_pred ---HHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 116 ---FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 116 ---~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
+.-.+.+.+|..+|+++.+. ..+++.+.|.+..+....|++++|.+++.+..... .-|..+...++-+....|+.
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC
Confidence 43345799999999998664 56889999999999999999999999999866433 22456666677777777776
Q ss_pred -hhHHHHHHHHHHcC-CCcchhhHH
Q 027083 193 -ESNDRVEALAKKFD-IRMNTENRK 215 (228)
Q Consensus 193 -~~a~~~~~~m~~~g-~~~~~~~~~ 215 (228)
+.+.+....+.+.. -.|-...+.
T Consensus 252 ~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCChHHHHHH
Confidence 66778888877642 234444443
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.99 E-value=0.00047 Score=54.92 Aligned_cols=136 Identities=10% Similarity=0.109 Sum_probs=97.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH----cc
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL----TN 154 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~ 154 (228)
.+...|++++|+++.+.- .+....-..|..|.+.++++.|.+.++.|.+. ..|... .-+..++. -.
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l-~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSIL-TQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHH-HHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH-HHHHHHHHHHHhCc
Confidence 334679999999886532 46677788899999999999999999999875 344433 33444433 33
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 155 RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
..+.+|..+|+++.+. ..++..+.+.+.-+....|++++|+.++....+.+-. ++.+...+|.+....++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCC
Confidence 4689999999998654 6788999999999999999999999998887765433 66666666666555443
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.99 E-value=0.0057 Score=49.66 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK------SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 106 (228)
..-.....+|.+.| ++...+.....+.+.....+ ...+|+.++.-....++.+.-...+++..+ ..+-+.
T Consensus 188 ~vlrLa~r~y~~~g--~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p 263 (400)
T COG3071 188 EVLRLALRAYIRLG--AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDP 263 (400)
T ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcCh
Confidence 34667788888888 45555555555555443321 235778888888877777777778888776 355666
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE-MVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~li~~ 185 (228)
..-.+++.-+.++|+.++|.++.++-.+.+..|...+ .-.+.+-++.+.-.+..+. .+..+..| ..+.+|=..
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L 337 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRL 337 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHH
Confidence 7778899999999999999999999988887777222 2345667777766666655 34556666 677788888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 186 CVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
|.+.+.+.+|...++. .....|+.++|..+-++++-.+
T Consensus 338 ~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 338 ALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcC
Confidence 9999999999999994 4556778999999888887554
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0017 Score=51.70 Aligned_cols=159 Identities=12% Similarity=0.036 Sum_probs=113.1
Q ss_pred HHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhH-HHHHH
Q 027083 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY-NALIY 114 (228)
Q Consensus 36 ~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~ 114 (228)
+.+-.+|.+.|+...++..++-. .. ..+ -+.||-.|-+.|.+..++..|+.+|.+-.. .-|-.+|| .-+-+
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqss--L~-q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSS--LT-QFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHH--hh-cCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHH
Confidence 56889999999755444433321 11 222 445888899999999999999999998875 24555555 44556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
.+-..+..++|.++|+...+.. ..+......+-.+|--.++++.|++.++++.+.|+. +...|+.+--+|.-.++++.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7778888999999998876653 346666667777778888999999999988888864 45566666666666677777
Q ss_pred HHHHHHHHHH
Q 027083 195 NDRVEALAKK 204 (228)
Q Consensus 195 a~~~~~~m~~ 204 (228)
+..-+.+...
T Consensus 377 ~L~sf~RAls 386 (478)
T KOG1129|consen 377 VLPSFQRALS 386 (478)
T ss_pred hHHHHHHHHh
Confidence 6666555443
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.0011 Score=46.21 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+......+...+...|+.++|.+.|+..... -..+...+..+-..|.+.|++++|...+++..+.+ ..+..++..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 3344455555666677777777777776652 23355566666667777777777777777665553 33455566666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
.++...|+.++|...|+...+. .|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 6677777777777777665553 34444433
No 71
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.93 E-value=0.0033 Score=58.48 Aligned_cols=194 Identities=7% Similarity=-0.020 Sum_probs=139.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
+.+++|..++++....-..-... +- ...|.++++.-.-.| ..+.....+++......| -..|..|...|.
T Consensus 1472 sEiekAR~iaerAL~tIN~REee--EK---LNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd~---~~V~~~L~~iy~ 1541 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEE--EK---LNIWIAYLNLENAYG--TEESLKKVFERACQYCDA---YTVHLKLLGIYE 1541 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhH--HH---HHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcch---HHHHHHHHHHHH
Confidence 45677777777765553222211 11 123555555555555 455555566666665553 468899999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HhhHHHHHHHHHccCCHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN---AMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~ 158 (228)
+.+..++|-++++.|.++ +.-....|...++.+.+.++-+.|..++.+..+. -|- .....-....--+.|+.+
T Consensus 1542 k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCch
Confidence 999999999999999985 4467788999999999999999999999987654 344 222233333345789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
.+..+|+.....- .--...|+..|+.=.+.|+.+.++.+|+++...++.|-
T Consensus 1618 RGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 9999998877542 22457899999999999999999999999999998774
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0048 Score=46.69 Aligned_cols=178 Identities=13% Similarity=-0.007 Sum_probs=137.7
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSYNAL 112 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 112 (228)
....|--+|.+.| +...+...+++....-|. +..+|..+-..|.+.|+.+.|.+-|++..+ +.|+. .+.|..
T Consensus 37 arlqLal~YL~~g--d~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQG--DYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhh
Confidence 4566788888888 566666666666665554 777999999999999999999999999875 45554 466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVK-PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
=--+|..|.+++|..-|++....-.- --..||..+--|..+.|+++.|.+.|++-.+..- -...+.-.+.+.....|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhccc
Confidence 77789999999999999998765211 2356788888888999999999999998776431 123556677888889999
Q ss_pred hhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 192 EESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 192 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
.-.|...++.....+. ++.+.....|+-
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 9999999988877776 788877766653
No 73
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.0071 Score=50.25 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=124.0
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|+..|-++.... ..+..+...+.+.|--.. +.+.+...+++.-...|. |..+..-|-..|
T Consensus 537 ~~~ldeald~f~klh~il----------~nn~evl~qianiye~le--d~aqaie~~~q~~slip~--dp~ilskl~dly 602 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAIL----------LNNAEVLVQIANIYELLE--DPAQAIELLMQANSLIPN--DPAILSKLADLY 602 (840)
T ss_pred hcCHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHhh--CHHHHHHHHHHhcccCCC--CHHHHHHHHHHh
Confidence 478899999888775441 111223344555554433 456665555544333332 778888888999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH-ccCCHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-TNRDQKA 159 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~ 159 (228)
-+.||-..|.+.+-+--+ =++.|..|.-=|-.-|...--+++|...|+...- +.|+.+-|-.||.+|. |.|+..+
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999988776544 3455677777677778888888999999987543 5799999999998776 5799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
|.+++++.++. +.-|.....-|++.+...|-
T Consensus 679 a~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999887753 56678888888888887764
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00091 Score=53.11 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=116.0
Q ss_pred hhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH
Q 027083 28 IFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAI-NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI 106 (228)
Q Consensus 28 ~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 106 (228)
-++..+||--|-.+|-+.. ....++..+.+-....| -.+|| .-+-..+-..++.++|.++++...+. -..|+
T Consensus 252 q~~~~dTfllLskvY~rid--QP~~AL~~~~~gld~fP---~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nv 324 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRID--QPERALLVIGEGLDSFP---FDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINV 324 (478)
T ss_pred cCCchhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCC---chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccc
Confidence 3456788988999999988 45566666555444444 34454 34445566778999999999998873 23355
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK--ETLKKVRR 184 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~ 184 (228)
...-++-..|.-.+.++-|.+.|+++.+-|+. ++..|+.+--+|.-.++++.++.-|++....--.|++ ..|-.|=.
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGF 403 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccce
Confidence 56666667788889999999999999999976 7778888777788888888888877776644333432 33444444
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 027083 185 RCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.....|++..|.+.|+...-+
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred eEEeccchHHHHHHHHHHhcc
Confidence 444555555555555554443
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.87 E-value=0.0035 Score=44.53 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
..+...|++++|...|++.... -..+...|..+-.++.+.|++++|...|++..+.. ..+...+..+-.++.+.|+.
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 3344455555555555554431 12233344444445555555555555555554432 22444444444555555555
Q ss_pred HHHHHHHHHHH
Q 027083 158 KAALSVIDEMV 168 (228)
Q Consensus 158 ~~a~~~~~~m~ 168 (228)
++|...|+...
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.86 E-value=0.0094 Score=50.98 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=140.6
Q ss_pred CccHHHHHHHHHHHHHHh-ccchhhhhhhhCc-chhHHHHHHHHHhhChh-c----HHHHHHHHhchhhcCCCCCCHHHH
Q 027083 1 MGDLQRAFITLNEFETAY-GDSIIDMEEIFSP-FTSLYPLVVACSRKGFE-T----LDSVYFQLENLSRAEPPYKSVAAI 73 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 73 (228)
.|+++.|+.+++.-.+.- ...+.. .+. ....+.+-..|...+.. + ..+++...+...+...|. -..++
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~----hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~-va~~l 286 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLK----HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA-VAATL 286 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCcc----CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHH
Confidence 378999999999866551 011100 000 11233455566666642 2 223333444444444432 45667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh----cCCC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCc----
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGS----SFGL-TPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSL---GVKPN---- 140 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~---- 140 (228)
+.|=..|.+.|++++|...+++..+ ..+. .|.+. -++.+...|+..+++++|..+++...+. -+.++
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 7777789999999888777766432 1122 23333 4677778899999999999998865331 12233
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH----cC--C
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GF--APS-KETLKKVRRRCVREMDEESNDRVEALAKK----FD--I 207 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~g--~ 207 (228)
.-+++.|=..|-..|++++|++++++.... +. .+. ...++.+-..|.+.+..+.|.++|..-.. .| .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 467999999999999999999999987632 22 233 46777888889999999988888765443 22 2
Q ss_pred CcchhhHHHHHHHHHhhhhc
Q 027083 208 RMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 208 ~~~~~~~~~li~~l~~~~~~ 227 (228)
+-...+|..|...+..++++
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred CchHHHHHHHHHHHHHcccH
Confidence 33456677777666666553
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.0024 Score=44.49 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=86.0
Q ss_pred CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 027083 103 TPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKK 181 (228)
Q Consensus 103 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 181 (228)
.|+ ......+...+.+.|++++|...|+.....+ ..+...|..+-.++.+.|++++|..+++.....+ ..+..++..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 443 3445666778899999999999999988765 3478888899999999999999999999877654 345677777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcchhhH
Q 027083 182 VRRRCVREMDEESNDRVEALAKKFDIRMNTENR 214 (228)
Q Consensus 182 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 214 (228)
+-..+...|+.+.|...+....+.. |+...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 7788999999999999999888865 444443
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0016 Score=46.29 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh-HHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS-YNA--LIYAFGKLKKTFEASRVFEHLVSLGVKPN--AMSYS 145 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~--li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~ 145 (228)
..|..++..+. .++...+...++.+.++ ...+.+. .-. +-+.+...|++++|...|+........|+ ....-
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45666666663 77777777778887764 2222122 222 33567777888888888888777652222 22344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
.|-..+...|++++|...++......+ ....+...=+.+.+.|+.++|...|..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566677778888888888765433332 233444555677788888888877764
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.0094 Score=47.39 Aligned_cols=156 Identities=11% Similarity=0.001 Sum_probs=100.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCC--CC-HHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPY--KS-VAAINCVI 77 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~ll 77 (228)
+|-+|+|+.+|..+.+...... ...-.|+..|-+.. ++.++....++.....+-. .. ...|+-+-
T Consensus 120 aGl~DRAE~~f~~L~de~efa~----------~AlqqLl~IYQ~tr--eW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE----------GALQQLLNIYQATR--EWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH----------HHHHHHHHHHHHhh--HHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 4778888888888877522111 12345777777766 4555544444333322210 01 22344444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI-YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
..+....+++.|..++..... ..|+.+--++++ +.+...|+++.|.+.++...+.+..--+.+-..|..+|...|+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 188 QQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 444455678888888877654 245555445555 5678888999999998888877666667778888889999999
Q ss_pred HHHHHHHHHHHHHCC
Q 027083 157 QKAALSVIDEMVNAG 171 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g 171 (228)
+++....+.++.+..
T Consensus 265 ~~~~~~fL~~~~~~~ 279 (389)
T COG2956 265 PAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHcc
Confidence 888888888777643
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.83 E-value=0.0032 Score=47.34 Aligned_cols=134 Identities=9% Similarity=0.017 Sum_probs=90.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH-HccCC--HHH
Q 027083 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-LTNRD--QKA 159 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~--~~~ 159 (228)
.++.+++...++...+. -..|...|..+-..|...|++++|...|++..+... -+...+..+-.++ .+.|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 55666776666666652 345666777777888888888888888888777642 2666666666653 56666 488
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
|.+++++..+..- -+..++..+-..+...|++++|...++.+.+..-. +..-+ .+|.+.+
T Consensus 129 A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~~r~-~~i~~i~ 188 (198)
T PRK10370 129 TREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP-RVNRT-QLVESIN 188 (198)
T ss_pred HHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH-HHHHHHH
Confidence 8888887776432 24566667777778888888888888888775543 34333 3445543
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.005 Score=47.32 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...-+.........|++..|...|.+... .-.||...||.+=-+|-+.|++++|..-|.+..+... -+....|.|-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlg 175 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLG 175 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHH
Confidence 666666678888899999999999999886 5678899999999999999999999999988776533 3566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
-.+.-.|+.+.|..++..-...+-. |...-..+.......|+++.|+.+...-
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 7788889999999999887776533 4455555777778889999998876543
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00081 Score=42.62 Aligned_cols=92 Identities=23% Similarity=0.131 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
..+-..+...|++++|...+++..+. ...+...+..+-..+...+++++|.+.++...+.. ..+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 33444555566666677666666542 12233455556666666666666666666655543 2233455666666666
Q ss_pred cCCHHHHHHHHHHHH
Q 027083 154 NRDQKAALSVIDEMV 168 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~ 168 (228)
.|+.+.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666665544
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.82 E-value=0.0022 Score=45.54 Aligned_cols=109 Identities=14% Similarity=0.000 Sum_probs=83.8
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 91 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.++++..+ +.|+. +..+-..+...|++++|...|+...... ..+...|..+-.++.+.|++++|...|+.....
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 34553 4456677888999999999999988765 347888888888999999999999999988864
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 171 GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 171 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
. ..+...+..+-.++...|+.++|...+....+..
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3 3366778888888889999999999998887744
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.79 E-value=0.0048 Score=46.34 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=95.9
Q ss_pred HHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHhcCC--HHHHHH
Q 027083 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA-FGKLKK--TFEASR 127 (228)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~--~~~a~~ 127 (228)
.+....+.......+. |...|..+-..|...|+.++|...|++..+- -.-|...+..+-.+ +...|+ .++|.+
T Consensus 56 ~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 56 EAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3444444444443443 8889999999999999999999999998862 22356677777776 467777 599999
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
++++..+.... +...+..+-..+.+.|++++|...++.+.+.. .|+..-+. +|++
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 99999887643 77888999999999999999999999987654 45554444 3354
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.71 E-value=0.018 Score=47.01 Aligned_cols=117 Identities=9% Similarity=-0.023 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHH
Q 027083 84 WDLDRAYQTFEAVGSSFGLTPDI-HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162 (228)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 162 (228)
+..+.+.+.+.. . ....|+. .....+-..+...|++++|...+++..+.. +.+...+..+-..+...|++++|.+
T Consensus 94 ~~~~~~~~~l~~--~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 94 GMRDHVARVLPL--W-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred cCchhHHHHHhc--c-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 444445544443 1 1233333 333445566777888888888888877654 2345566777777778888888888
Q ss_pred HHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 163 VIDEMVNAGF-APSK--ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 163 ~~~~m~~~g~-~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+++.....- .|+. ..|..+...+...|+.++|..+++....
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8777654321 2332 2344566677777888888888877643
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.71 E-value=0.026 Score=50.43 Aligned_cols=194 Identities=11% Similarity=0.032 Sum_probs=140.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|..++.+..+.. +.....|.+|-..|=+.| +..+.+.......- ..|. |...|-.+=....
T Consensus 153 g~~eeA~~i~~EvIkqd----------p~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAH-L~p~-d~e~W~~ladls~ 218 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD----------PRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAH-LNPK-DYELWKRLADLSE 218 (895)
T ss_pred CCHHHHHHHHHHHHHhC----------ccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHh-cCCC-ChHHHHHHHHHHH
Confidence 78899999999887762 223457899999999999 45555444332222 2222 6678888888888
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----cHhhHHHHHHHHHccCCH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP----NAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~ 157 (228)
+.|+++.|.-.|.+..+. -+++...+=--...|-+.|+...|+.-|.++.+....- ...+--.+++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999873 34566666667788999999999999999998763211 233344556777778888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 158 KAALSVIDEMVNA-GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 158 ~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
+.|.+.+..-... +-..+...++.+...|......+.+......+......+|.
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 8898888876653 33456677888888888888888888887777764333333
No 87
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.0015 Score=41.28 Aligned_cols=95 Identities=17% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 188 (228)
+..+...+...|++++|...+++..+.. ..+...+..+-..+...|++++|.+.++...... ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 5566778888999999999999987763 2345778888889999999999999999877654 2344678888889999
Q ss_pred cCChhhHHHHHHHHHHc
Q 027083 189 EMDEESNDRVEALAKKF 205 (228)
Q Consensus 189 ~~~~~~a~~~~~~m~~~ 205 (228)
.|+.+.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999988877653
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.67 E-value=0.026 Score=50.43 Aligned_cols=143 Identities=10% Similarity=-0.009 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+...+-.|-......|..++|..+++.... +.||.. ....+...+.+.+.+++|....++..+... -+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 456666666777777888888888888765 456544 566677778888888888888888776532 244455666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHH
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 218 (228)
-.++.+.|+.++|.++|++.... .|+ ..++..+-.++-..|+.++|...++...+..-. ....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH
Confidence 66677778888888888887762 233 567777777777888888888888777664332 334444443
No 89
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.66 E-value=0.0013 Score=45.47 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
..++..+|.+++..|+++....+.+.. .|+.++...=. +. .-..+...|+..+-.+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc---------cCCCCCCCCCHHHHHHHHH
Confidence 456777777777777777777766543 34433321000 00 1123455677777777777
Q ss_pred HHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh
Q 027083 150 AHLTNRDQKAALSVIDEMV-NAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~ 188 (228)
+|+..|++..|+++++... ..++.-+..+|..|++-+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777654 44666667777777765443
No 90
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.58 E-value=0.0015 Score=45.18 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
|..++.++|-++++.|+++....+.+..- |+.++. -...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~---------~~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNG---------KKKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCC---------ccccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777666666665432 222111 000010 1134568999999999999
Q ss_pred HHHhcCChhhHHHHHHHHHH-cCCCcchhhHHHHHHHHHh
Q 027083 185 RCVREMDEESNDRVEALAKK-FDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~l~~ 223 (228)
+|+.++++..|.++.+...+ .++..+...+..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877764 7888888888888764443
No 91
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.0035 Score=53.91 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=70.6
Q ss_pred cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
...+|.++-++|+-.+ +...++..+.+.....+- ..++|+.+=+-+....++|.|...|..... .|...||
T Consensus 420 sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~--faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYn 490 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPR--FAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYN 490 (638)
T ss_pred CcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCc--cchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhH
Confidence 3568999999999888 455555555544332222 567777777777777777777777765433 4555555
Q ss_pred HHHH---HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 027083 111 ALIY---AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 111 ~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 167 (228)
++-. .|.|.+.++.|+-.|+....-+.. +.+.--.+...+-+.|+.++|++++++.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 5442 355555555555555554433211 2233333333333444444444444443
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.52 E-value=0.034 Score=47.25 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+.+|...|+.--+...++.|+.+|.+..+. +..+ .+++++++|.-||. ++..-|.++|+-=.+. +.-++.--+..+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHH
Confidence 458999999999999999999999999996 7777 89999999998886 5678899999863332 223445557788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK--ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+-+..-++-..+..+|+.....++.||. ..|..+|+-=+..|++..+..+-+++..
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8888889999999999999988777765 8999999999999999999888766653
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.51 E-value=0.026 Score=43.36 Aligned_cols=152 Identities=16% Similarity=0.066 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh--
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM-- 142 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-- 142 (228)
....+-.+...+...|+.+.|...|++.... .|+. ..+..+-.++.+.|++++|...++++.+.. |+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 5667777888889999999999999999763 2332 366777889999999999999999998753 3322
Q ss_pred --hHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChhh
Q 027083 143 --SYSLLVDAHLTN--------RDQKAALSVIDEMVNAGFAPSK-ETL-----------------KKVRRRCVREMDEES 194 (228)
Q Consensus 143 --t~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~~~~~~ 194 (228)
++..+-.++... |+.++|.+.|+...+.. |+. ..+ ..+-..+.+.|+.+.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 344444444433 77899999999987643 332 111 123456778899999
Q ss_pred HHHHHHHHHHcCC--CcchhhHHHHHHHHHhhhhc
Q 027083 195 NDRVEALAKKFDI--RMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 195 a~~~~~~m~~~g~--~~~~~~~~~li~~l~~~~~~ 227 (228)
|...+....+..- ......+..+..++.-+++|
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 9999998887532 22345666666666655544
No 94
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0089 Score=40.29 Aligned_cols=99 Identities=18% Similarity=0.044 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHhhHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGL-TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK--PNAMSYSLLV 148 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~t~~~li 148 (228)
++-.+...+.+.|+.++|...|+++.....- ......+..+-..+.+.|+++.|...|+........ .....+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566667777777777777653110 111234445666677777777777777766543211 1134455556
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.++.+.|+.++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666677777777777766654
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.46 E-value=0.011 Score=49.28 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HhhHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN-AMSYSLL 147 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~l 147 (228)
..-|...+..| ..|+.++|+..++...+. .||.. -.....+.+.+.++.++|.+.++.+... .|+ ...+-.+
T Consensus 307 aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 307 AAQYGRALQTY-LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHH-HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 44555555544 568999999999998863 45555 4455567899999999999999998876 566 6667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
-.++.+.|++.+|..++++.... .+-|...|..|-++|...|+..++.....+..
T Consensus 381 a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 88899999999999999877654 35578999999999998888777766554443
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.43 E-value=0.042 Score=43.98 Aligned_cols=126 Identities=17% Similarity=0.074 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNAL 112 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 112 (228)
.|..+-..|.+.|. ...+...+.+.....|. +...|+.+-..+...|+.++|...|++..+ +.|+ ...|..+
T Consensus 66 ~~~~~g~~~~~~g~--~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~l 138 (296)
T PRK11189 66 LHYERGVLYDSLGL--RALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 35666667777774 44444445544444443 678899999999999999999999999876 3454 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
-..+...|++++|.+.|+...+. .|+..............+++++|.+.|.+..
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88889999999999999998765 3543322222223445678999999997654
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.013 Score=39.45 Aligned_cols=98 Identities=14% Similarity=0.020 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSLLVDAHLTNRDQKAALSVIDEMVNAG--FAPSKETLKK 181 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ 181 (228)
++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+-.++.+.|+++.|.+.|+...... ......++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45666778889999999999999998653 33 3567778899999999999999999988642 1122466777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 182 VRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 182 li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
+..++...|+.+.|...+..+.+..-
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 78889999999999999999988753
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.41 E-value=0.05 Score=44.42 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcH--hhHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-KPNA--MSYSL 146 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~t~~~ 146 (228)
......+-..+...|++++|...+++.... .+.+...+..+-..|...|++++|...+++...... .|+. ..|..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 334444555677899999999999999873 234456777888899999999999999998776432 2332 34567
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
+-..+...|+.++|.+++++...
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhc
Confidence 88889999999999999998754
No 99
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.40 E-value=0.0018 Score=50.50 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+.+++++|...|+-||..+-..|+++|.+-+.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 55666666666666666666666666666544
No 100
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.40 E-value=0.014 Score=41.39 Aligned_cols=128 Identities=16% Similarity=0.071 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH--hH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH--SY 109 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~ 109 (228)
..|..++..+.+.+. ...-..+..+....+..+ .....-.+-..+...|++++|...|+..... ...|+.. ..
T Consensus 13 ~~y~~~~~~~~~~~~---~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQAGDP---AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 357777777754442 222222333333333210 1122222336677899999999999999985 4333222 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
-.+-..+...|++++|...++...... .....+...=+.+.+.|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445678889999999999997754433 3556677888889999999999999875
No 101
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0067 Score=48.17 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=99.4
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
+|..+|+..-+.+- ...+-..+.+..........++...++|..++ .++.+.|..||+...+. +..+...|..-|
T Consensus 3 v~i~~m~~~~r~~g--~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEG--IEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCC--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 57788888888773 44444444444443333335555555554432 46778899999999884 677888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNA----MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 186 (228)
+.+.+.++.+.|..+|++.... .|.. ..|...++-=.+.|+.+.+..+.+++.+. .|+..++..+++-|
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999999998765 3333 48999999999999999999999888863 45555555554433
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.38 E-value=0.075 Score=45.88 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-------------CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSF-------------GLTPDIHSY--NALIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+|+.+-..|......+-..+++....... .-.|+...| .-+-..|-..|+.++|....++....
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 77778777776666666666666654321 123455445 44456788999999999999998876
Q ss_pred CCCc-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 137 VKPN-AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 137 ~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
.|+ +..|.+--..+-+.|++++|.+.++..+... .-|...=+.....+.|.|++++|..++....+.+..|
T Consensus 224 -tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 224 -TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 455 6778888899999999999999999888654 3477777788889999999999999999999888744
No 103
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.012 Score=42.79 Aligned_cols=62 Identities=6% Similarity=-0.059 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTP--DIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
.|..+...+...|++++|...|++.... ...| ...++..+-..|.+.|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444445555555555554431 1111 112444444445555555555555544443
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.38 E-value=0.046 Score=48.92 Aligned_cols=143 Identities=12% Similarity=0.010 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~ 110 (228)
...+-.|-....+.|+ ..++...+.......|- +....-.+...+.+.+++++|+...++.... .|+.. ..+
T Consensus 86 ~~~~~~La~i~~~~g~--~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 86 ELFQVLVARALEAAHR--SDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred HHHHHHHHHHHHHcCC--cHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 4556667777777774 55555566665554554 7778888889999999999999999999863 56555 556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
.+=.++.+.|+.++|..+|++....+ .-+..++..+=.++-+.|+.++|...|+...+. ..|....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 66678899999999999999998743 234788888899999999999999999987754 234555555444
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.02 Score=44.42 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=96.7
Q ss_pred HHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH----
Q 027083 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF---- 116 (228)
Q Consensus 41 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~---- 116 (228)
.|+..| +..+++...... . +....-.=...+.+...++.|....+.|..- -+..|.+.|-+++
T Consensus 117 i~~~~~--~~deAl~~~~~~---~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 117 IYMHDG--DFDEALKALHLG---E----NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhcCC--ChHHHHHHHhcc---c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHh
Confidence 345555 455555554431 1 2333333345556777888999999998863 3556666554444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhhH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR-RRCVREMDEESN 195 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~a 195 (228)
.-.+.+.+|.-+|++|-.+ ..|++.+-|....++...|++++|..++++.....-+ |..|...+| .+.-...+.+..
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 4446789999999998653 4789999999999999999999999999888765433 344444444 444444444555
Q ss_pred HHHHHHHHHc
Q 027083 196 DRVEALAKKF 205 (228)
Q Consensus 196 ~~~~~~m~~~ 205 (228)
.+....+...
T Consensus 262 ~r~l~QLk~~ 271 (299)
T KOG3081|consen 262 ERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhc
Confidence 5666665553
No 106
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.34 E-value=0.00055 Score=43.74 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHH
Q 027083 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALS 162 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 162 (228)
.|+.+.|..+|+++.......|+...+-.+-.+|.+.|++++|..+++. ...+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666554311112233333355566666666666666655 21111 122222233455555666666665
Q ss_pred HHH
Q 027083 163 VID 165 (228)
Q Consensus 163 ~~~ 165 (228)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.017 Score=47.93 Aligned_cols=121 Identities=17% Similarity=0.068 Sum_probs=91.2
Q ss_pred HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 027083 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF 116 (228)
Q Consensus 37 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 116 (228)
+|+..+...++ ...+...++++....+ + ..-.+...+...++-.+|.++.++..++ .+-|....+.-.+.|
T Consensus 174 ~Ll~~l~~t~~--~~~ai~lle~L~~~~p---e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 174 TLLKYLSLTQR--YDEAIELLEKLRERDP---E--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHhhccc--HHHHHHHHHHHHhcCC---c--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34555555553 4555555665555442 4 3445777777788888999999998863 334666677777789
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHh-hHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAM-SYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
.+.++.+.|..+.++.... .|+.. +|..|..+|.+.|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999876 56555 99999999999999999999988875
No 108
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00069 Score=43.28 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHH
Q 027083 119 LKKTFEASRVFEHLVSLGV-KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-ETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~ 196 (228)
.|+++.|..+++++.+... .|+...+-.+-.++.+.|+.++|.++++. . ...|+. ...-.+-.+|...|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987743 23566666689999999999999999988 2 223332 34445577899999999999
Q ss_pred HHHHH
Q 027083 197 RVEAL 201 (228)
Q Consensus 197 ~~~~~ 201 (228)
.+++.
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0085 Score=53.86 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCC
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK------------LKKTFEASRVFEHLVSLGVKP 139 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p 139 (228)
.+..+=+.+.+...+..|.+-|..+.++....+|+++.-+|=+.|.+ .+..+.|.++|.+..+... -
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-k 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-K 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-c
Confidence 34333345555555555555555444432333455544333332221 1234445555555554432 2
Q ss_pred cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 140 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
|...=|.+=-.++..|++..|.+||.+.++... -...+|-.+-++|.-.|++..|.++|+...+
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554432 1223344455555555555555555555444
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.016 Score=46.76 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
-++-+++.-..++++++-.++.+++ .=..-|.+.|| +-++++-.|...+|+++|=+...-.++-+..-.+.|-.+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 3445556667788999988888887 34555555555 568999999999999999776655555344444566678899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVR-RRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
.+.++.|.+++-.+. -..+..+.-.+| .-|.+.+++--|-..|+.+....-.
T Consensus 441 nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 999999988775444 233444444444 5677888888888888888775543
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.26 E-value=0.021 Score=41.55 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP--NAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 89 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
+...+..+.+..+-.--...|..+...+...|++++|...|++.......| ...+|..+-..+...|+.++|.+.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444443222333345667888888889999999999999987653222 235788888899999999999999988
Q ss_pred HHHCCCCCC-HHHHHHHHHHHH-------hcCChhhHHHHHHHHHH---cCCCcchhhHHHHHHHHHhhhh
Q 027083 167 MVNAGFAPS-KETLKKVRRRCV-------REMDEESNDRVEALAKK---FDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 167 m~~~g~~p~-~~t~~~li~~~~-------~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~l~~~~~ 226 (228)
.... .|+ ..++..+...+. ..|+++.|...+..... ..+..++..+..+-..|.-.++
T Consensus 98 Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 98 ALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 7754 333 455555655666 77888877666654432 2334455555555555555444
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.26 E-value=0.11 Score=44.98 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
++..+-..|-..|+.++|++..++.... .|+ +..|..--+.|-+.|++++|.+.++....... -|...-+--...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHH
Confidence 4455566777899999999999998873 466 45777778899999999999999999887764 488888889999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH------HHH--HHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSK------ETL--KKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~--~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+.|.|++++|.+++....+.+..|-. ..| ...-.+|.+.|+...|..-+..+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999988877765532 222 2224678899999888877666655
No 113
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.24 E-value=0.0091 Score=46.71 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH----------------HHH
Q 027083 67 YKSVAAINCVILGCANI-----WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT----------------FEA 125 (228)
Q Consensus 67 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~----------------~~a 125 (228)
..|..+|-..+..+... +.++-....++.|+. .|+.-|..+|+.||+.+=|-... +=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 44788898888888754 567777777888988 69999999999999988765432 237
Q ss_pred HHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 027083 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ-KAALSVIDEMVN 169 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~ 169 (228)
.+++++|...|+.||-.+-..|++++++.+.+ .+..++.-.|-+
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 88999999999999999999999999999876 455555555554
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.018 Score=47.42 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
.+...|+++.|.+.|++..+. -.-+...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 445678888888888888763 22345567777778888888888888888887654 235667777778888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
+|...|++... +.|+...+...+..
T Consensus 88 eA~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 88888887775 34555444444433
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.16 E-value=0.15 Score=48.11 Aligned_cols=163 Identities=14% Similarity=0.041 Sum_probs=125.5
Q ss_pred cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC---HH
Q 027083 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD---IH 107 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~ 107 (228)
+...|..|...|-+.+..+.+..+...+-.. ..- ....|......+.+..+-+.|..++.+..+- -|- ..
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~ 1601 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVE 1601 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHH
Confidence 3456888999999988655555444433222 221 5569999999999999999999999998762 343 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK--ETLKKVRRR 185 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~ 185 (228)
...-....=.++|+.+.+..+|+.....-.+ -...|+..|+.=.++|+.+.+..+|++....++.|-. ..|...++.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 4555666677999999999999999876433 5678999999999999999999999999999998864 788888888
Q ss_pred HHhcCChhhHHHHHHH
Q 027083 186 CVREMDEESNDRVEAL 201 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~ 201 (228)
=...|+-..++.+=..
T Consensus 1681 Ek~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHhcCchhhHHHHHHH
Confidence 7777887776655433
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0023 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=24.2
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
+.|++++|.++|++.... .+-|...+-.+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555442 1113334444555555555555555555554443
No 117
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.12 Score=43.29 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC
Q 027083 5 QRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW 84 (228)
Q Consensus 5 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 84 (228)
++|...|+...+.. +.....|+-+-+-|..... -..+...+.+.....|. |-..|-.|=++|.-.+
T Consensus 347 EKAv~YFkRALkLN----------p~~~~aWTLmGHEyvEmKN--t~AAi~sYRrAvdi~p~--DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 347 EKAVMYFKRALKLN----------PKYLSAWTLMGHEYVEMKN--THAAIESYRRAVDINPR--DYRAWYGLGQAYEIMK 412 (559)
T ss_pred HHHHHHHHHHHhcC----------cchhHHHHHhhHHHHHhcc--cHHHHHHHHHHHhcCch--hHHHHhhhhHHHHHhc
Confidence 45666666554442 1113457777788887764 22333333333333333 7788888889999889
Q ss_pred CHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 163 (228)
...-|+-.|++... ++| |...|.+|=++|.+.+++++|++.|.....-|- .+...+..|-+.|-+-++.++|-..
T Consensus 413 Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999988888765 445 677999999999999999999999999887663 3678899999999999999999887
Q ss_pred HHHHHH----CCCCCCHHHHHH--HHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 164 IDEMVN----AGFAPSKETLKK--VRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 164 ~~~m~~----~g~~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
|....+ .|..-+...... |-..+.+.+++++|........+. .+..+-=+.+++.+
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRei 550 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 776553 344333222222 345677889999988776665544 56666666666544
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.055 Score=41.71 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=95.9
Q ss_pred HHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHH
Q 027083 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAF 116 (228)
Q Consensus 38 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 116 (228)
......+.| +...+...+.+.....++ |-.+|+.+=.+|-+.|+.++|..-|.+..+ +.| +....|.+--.|
T Consensus 106 ~gk~~~~~g--~~~~A~~~~rkA~~l~p~--d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~ 178 (257)
T COG5010 106 QGKNQIRNG--NFGEAVSVLRKAARLAPT--DWEAWNLLGAALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHhc--chHHHHHHHHHHhccCCC--ChhhhhHHHHHHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHH
Confidence 555566666 466666666665555554 889999999999999999999999999876 334 455778888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
.-.|+.+.|..++......+.. |...-..+.-..+..|++++|+++...
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999998877643 667777777778999999999987653
No 119
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.08 E-value=0.11 Score=45.38 Aligned_cols=180 Identities=11% Similarity=-0.015 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
|.+++|.+++++-.+.+..+.. -|-.+-+.+-+.++ +...++|..-.+.... .+-.|-.+-+.=
T Consensus 665 d~~eeA~rllEe~lk~fp~f~K----------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-----~ipLWllLakle 729 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHK----------LWLMLGQIEEQMENIEMAREAYLQGTKKCPN-----SIPLWLLLAKLE 729 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHH----------HHHHHhHHHHHHHHHHHHHHHHHhccccCCC-----CchHHHHHHHHH
Confidence 5677777777666655432222 24445555555554 2233333333222222 334676666666
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
-+.|.+-.|+.+++.-+.+ .+-|...|-..|++=.+.|..+.|..++.+..+. +.-+...|.--|-...+.++-...
T Consensus 730 Ek~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 6778999999999998863 4567889999999999999999999988877665 233445555555544444432222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+.++ + ..-|....-++-..|-....++.++..|...++
T Consensus 807 ~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 807 IDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22221 1 122333344444444444445555544444444
No 120
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.15 Score=43.03 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
.|---+..=-..|++.+|.++|+...+ .+|+...|++.|+.=.+-+.++.|..+|+..+-. .|+..+|---..-=
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE 217 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHH
Confidence 444444555567999999999999864 6899999999999999999999999999998754 59999999888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHc
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV----REMDEESNDRVEALAKKF 205 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~ 205 (228)
-++|.+..+..++....+. .-|...-..|+-+|+ +...++.|.-++....+.
T Consensus 218 ~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999876642 113333344444444 456677888887777654
No 121
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.086 Score=44.34 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|---+.+=.++..+..|..+|+..... =...|. .|---+-+=-..|++..|.++|+.-.. ..||...|++.|
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI 181 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFI 181 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 5566766666667888999999999998863 222233 334444455567999999999999764 589999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+.=.+-+.++.|..+++.... +.|++.+|-.-..-=-+.|++..+..+++...+
T Consensus 182 ~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999886 459999999888888889999999999988775
No 122
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.0061 Score=43.24 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV-----NAGFAPSKETLK 180 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~ 180 (228)
...++..+...|+++.|.++.+.+.... +.|...|-.+|.+|.+.|+...|.++|+.+. +.|+.|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4555666677788888888877776654 3366678888888888888888877777765 347777766543
No 123
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.05 E-value=0.07 Score=38.98 Aligned_cols=87 Identities=6% Similarity=-0.025 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD--IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
....+..+-..+...|+.++|...|++..+. ...++ ...+..+-..+.+.|++++|...+++..+... -+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 4556677777788889999999999998763 33332 45788888899999999999999998877532 24556666
Q ss_pred HHHHHHccCCH
Q 027083 147 LVDAHLTNRDQ 157 (228)
Q Consensus 147 li~~~~~~g~~ 157 (228)
+-..+...|+.
T Consensus 112 lg~~~~~~g~~ 122 (172)
T PRK02603 112 IAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHcCCh
Confidence 66677766653
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0034 Score=38.06 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
.+.|++++|.++|+++..... -+...+-.+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 467888999999999877642 27777778889999999999999998877764 46655555444
No 125
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.12 Score=41.16 Aligned_cols=130 Identities=14% Similarity=0.044 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh---cCCCCCC--HHhHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCC--
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGS---SFGLTPD--IHSYNALIYAFGKL-KKTFEASRVFEHLVS----LGVKP-- 139 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~p~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~g~~p-- 139 (228)
.|.....+|-+. ++++|...+++... +.| .|+ ..++..+-..|-.. |++++|.+.|++... .| .+
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~ 153 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHS 153 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Chhh
Confidence 333333443333 66666666665432 111 122 22455555667776 788888888877533 23 22
Q ss_pred cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHH-H-HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 140 NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-----APSKE-T-LKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 140 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t-~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
-..++.-+...+.+.|++++|.++|++....-. +++.. . +.++| ++...|+...|...++.....
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 234566777788888999999999988775432 22332 2 23333 444557888888888877654
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.95 E-value=0.28 Score=44.27 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
+++.+|+..++++.+.+ |...|..++.+++........+++...+...+..+. |..|..++-.+|.
T Consensus 23 ~qfkkal~~~~kllkk~------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYR 88 (932)
T ss_pred HHHHHHHHHHHHHHHHC------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHH
Confidence 45667888888777664 445677888888765554566666555555544443 8899999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC------
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR------ 155 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g------ 155 (228)
+.++.++|..+|++... ..|+......++.+|.+-+++.+-.++==+|-+ .+.-++..|.++|+.....-
T Consensus 89 d~~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHhhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccc
Confidence 99999999999999975 468888889999999999987664333323322 23446677777777665431
Q ss_pred ----CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 156 ----DQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 156 ----~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
-...|.+.++.+.+.+-+. +..-.-.-...+-..|..++|..++
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1234555555555433111 1111111122333445566666665
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.94 E-value=0.048 Score=44.90 Aligned_cols=91 Identities=9% Similarity=0.056 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
..+...|++++|...|++..+..- -+...|..+-.+|.+.|++++|...+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 456678999999999999987653 367788888899999999999999999988743 225677888888999999999
Q ss_pred hHHHHHHHHHHcC
Q 027083 194 SNDRVEALAKKFD 206 (228)
Q Consensus 194 ~a~~~~~~m~~~g 206 (228)
.|...++...+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988755
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.084 Score=47.83 Aligned_cols=119 Identities=11% Similarity=0.076 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
..+.|+++|.+..+ .-+-|.+.-|-+=-.++.+|++..|..+|.+...... -+..+|-.+-++|...|++..|+++|
T Consensus 627 ~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 35678888888776 2344666666676778888899999999988877653 25567888888899999999999888
Q ss_pred HHHH-HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 165 DEMV-NAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 165 ~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+... +..-+-+......|-+++-+.|.+.++.+........-
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8744 44445567788888888888888888887766555433
No 129
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.89 E-value=0.01 Score=42.07 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhhHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-----LGVKPNAMSYS 145 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~ 145 (228)
+...+...+...|+.+.|..+.+..... -+.|...|-.+|.+|...|+...|.+.|+.+.+ .|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 5566677778899999999999999873 455788999999999999999999999998743 48889887643
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.86 E-value=0.076 Score=46.66 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC----------
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGL---------- 102 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---------- 102 (228)
..|..+|.+|...|..+.++.+... ..+ .+| +...|+.+.+..-..--.+.|.++++....+...
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q-~le--k~~--d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQ-ELE--KDP--DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHH-Hhc--CCC--cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 3478899999999964444443222 222 333 6677777776665555566677776665432000
Q ss_pred ---------------CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 103 ---------------TP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN-AMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 103 ---------------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
.| -..+|=..=-+..+.++++.|.+.|..-..- .|| ...||.+=.+|.+.|+-.+|...++
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 00 1122222333455777888888888887654 455 5569999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CcchhhHHHHHHH
Q 027083 166 EMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI-RMNTENRKNILFN 220 (228)
Q Consensus 166 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~ 220 (228)
+-.+.+ .-+...|..-+....+.|.+++|.+.+..+.+... ..|......++..
T Consensus 578 EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 578 EALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 988877 55566666677777888999999988877775332 2255555555543
No 131
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.86 E-value=0.1 Score=46.84 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=119.4
Q ss_pred HHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 027083 39 VVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118 (228)
Q Consensus 39 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 118 (228)
+-++....-......+...-... ...+.-+...|.-+-.++.+.|..++|..+|..+... ..--+...|--+-.+|-.
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYME 461 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHH
Confidence 33444433334555555444332 2334446778888999999999999999999999985 444457889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhc
Q 027083 119 LKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMV--------NAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~ 189 (228)
.|..+.|...|+...... | +...-.+|-+.+-+.|+.++|.+++..+. ..++.|+...-....+.+...
T Consensus 462 l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999988653 3 33344556666788999999999999854 345777777777777888888
Q ss_pred CChhhHHHHHHHHHH
Q 027083 190 MDEESNDRVEALAKK 204 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~ 204 (228)
|+.++-..+...|+.
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998887777666655
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.17 Score=39.44 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
..-..-...|++.|+.++|++...... +....-.=+..+.|..+++.|++.++.|.+- -+-.|-+-|-++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~a 178 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQA 178 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHH
Confidence 333344456788999999999877521 2222333344567788899999999999863 355666655555
Q ss_pred HHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 151 HLT----NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 151 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
+.+ .+.+.+|.-+|++|-++ ..|+.-+.+-...++...|++++|+.+.+.......+ ++++...+|.+-
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a 251 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLA 251 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH
Confidence 543 46789999999998753 6789999999999999999999999999999987776 577777766543
No 133
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.75 E-value=0.04 Score=44.57 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
+.+.-|.-|...|+.+.|.++-.+.+- ||..-|-..|++|++.++|++.+++-.. +-+++-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 445557777888998888888666642 7899999999999999999988876543 23569999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
.+.|...+|..++.. + ++..-+..|.+.|++.+|.+..
T Consensus 248 ~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHH
Confidence 999999999888765 1 1244566677777777766553
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.75 E-value=0.042 Score=39.37 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=45.3
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHS-YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
..|++++|.++|+.... +.|.... |-.|=-++-..|++++|...|........ -|+..+-.+=.++...|+.+.|
T Consensus 47 ~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 47 EVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 55666666666666554 2333332 23333444555666666666666555543 3555555555556666666666
Q ss_pred HHHHHHHH
Q 027083 161 LSVIDEMV 168 (228)
Q Consensus 161 ~~~~~~m~ 168 (228)
.+.|+...
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 66665444
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.72 E-value=0.29 Score=41.19 Aligned_cols=143 Identities=15% Similarity=-0.020 Sum_probs=101.0
Q ss_pred HHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 56 QLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
.+..+....|- |...+......+.+.++.++|.+-++.+... .|+ ....-.+-++|.+.|.+.+|.+++++...
T Consensus 328 ~l~~L~~~~P~--N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 328 LLQPLIAAQPD--NPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 33334444443 7778888888999999999999999999863 576 44555566899999999999999999877
Q ss_pred CCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCcchh
Q 027083 135 LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD--IRMNTE 212 (228)
Q Consensus 135 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~ 212 (228)
.. +-|+..|..|-.+|...|+..++..-.-+ +++..|+++.|........+.. -.|+-.
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 64 55999999999999999998887765544 3445555555555544444322 234444
Q ss_pred hHHHHHHHHH
Q 027083 213 NRKNILFNLE 222 (228)
Q Consensus 213 ~~~~li~~l~ 222 (228)
-+...|..+.
T Consensus 464 R~dari~~~~ 473 (484)
T COG4783 464 RADARIDQLR 473 (484)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.63 E-value=0.16 Score=37.02 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=64.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN--AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKV 182 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l 182 (228)
...+..+-..+...|++++|...|++..+....+. ...+..+-..+.+.|++++|...+++.... .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34567777788999999999999999876543332 467888899999999999999999987764 343 4555566
Q ss_pred HHHHHhcCC
Q 027083 183 RRRCVREMD 191 (228)
Q Consensus 183 i~~~~~~~~ 191 (228)
-..+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666666665
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.58 E-value=0.021 Score=34.23 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
.+.+.|++++|.+.|++..+... -+...+..+-.++.+.|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555554431 144445555555555555555555555443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.28 Score=37.98 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=15.5
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.|...|.-+-..|...|++++|.-.++++.-
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544443
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.45 E-value=0.73 Score=42.48 Aligned_cols=131 Identities=9% Similarity=0.032 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH-
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD- 149 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~- 149 (228)
..+-.+-.+|-+.|+.+++..++++..+- . .-|....|.+-..|... ++++|..++......-+ +..-|+.+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~ 191 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEI 191 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHH
Confidence 45555666777779999999999999983 4 55677888888888888 89998888776654311 1111111111
Q ss_pred --HH--HccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 150 --AH--LTNRDQKAALSVIDEMVNA-GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 150 --~~--~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-+ ....+++.-..+.+.+... |..--..++--+-..|....+++++..++..+.+..
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 11 1112233333333333322 333334444445555555555555555555555443
No 140
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.39 E-value=0.074 Score=47.14 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=65.8
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 129 (228)
+..++..+..++.... -+--|..+-..|+..|+++.|.++|-+--. ++..|.+|.++|.+++|.++-
T Consensus 748 w~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHH
Confidence 4444444444444333 234577778888999999999988876543 577889999999999998887
Q ss_pred HHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 130 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
++.. |.+...+.|-+--.-+-++|++.+|++++
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7654 33444555655555555566666655543
No 141
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=0.15 Score=42.74 Aligned_cols=131 Identities=13% Similarity=0.068 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh-HHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFG-LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS-YSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ 146 (228)
-+.+|++.|+.--+...++.|+.+|-+..+. + +.|+++.++++|.-++. |+..-|.++|+-=... .||... -+-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 4678999999999999999999999999995 7 78999999999998875 5677889999763332 355444 466
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS--KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+.-+.+-++-+.|..+|+.-+.+ +.-+ ...|..+|+.=+..|++..+..+-+.+..
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777788899999999999854422 1222 46888889888888888777766655543
No 142
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.35 E-value=0.41 Score=38.41 Aligned_cols=128 Identities=11% Similarity=0.164 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh--cCC----HHHHHHHHHHHHhCCC---CCcHhhHHHHHHHHHccCC
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK--LKK----TFEASRVFEHLVSLGV---KPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~ 156 (228)
++....+++.+++. |++-+.++|-+..-.... ..+ ...|..+|+.|++.+. .++-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 45567788888884 888887777663333222 222 4557788888887753 3566667777665 4443
Q ss_pred H----HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--hhhHHHHHHHHHHcCCCcchhhHHH
Q 027083 157 Q----KAALSVIDEMVNAGFAPSKE-TLKKVRRRCVRE-MD--EESNDRVEALAKKFDIRMNTENRKN 216 (228)
Q Consensus 157 ~----~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~-~~--~~~a~~~~~~m~~~g~~~~~~~~~~ 216 (228)
+ +.++.+++.+.+.|+..+-. -+-+-+-++... .+ +.++..+++.+.+.|+++....|..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3 45567777777777766432 222333333322 11 4466777888888888877777663
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.31 E-value=0.14 Score=40.20 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC-CHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA----MSYSLLVDAHLTNRDQKAALSVIDEMVNAG-FAP-SKETL 179 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~ 179 (228)
...|+..+..+.+.|++++|...|+.+.+. .|+. ..+-.+-.+|...|++++|...|+.+.+.- -.| ....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 445777776667778888998888888775 3443 466677778888889999998888887531 111 23344
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 180 KKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-.+...+...|+.+.|..+++.+.+.-
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445556677888899998888877643
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.27 E-value=0.41 Score=38.82 Aligned_cols=128 Identities=19% Similarity=0.080 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
+.+..|.-+...|....++.+. .+ -.. |+..-|-+-|.+++..+++++-..+... + -.+.-|-.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~--k~---Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s--k-----KsPIGyepFv 244 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLK--KE---FKV--PDKRFWWLKIKALAENKDWDELEKFAKS--K-----KSPIGYEPFV 244 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHH--HH---cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C-----CCCCChHHHH
Confidence 4455567777777533333322 11 133 3888999999999999999988876442 1 1347899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
++|.+.|...+|.++... .++..-+..|.+.|++.+|.+.-.+.+ |......+...+.....
T Consensus 245 ~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNND 306 (319)
T ss_pred HHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCCh
Confidence 999999999999988866 344788899999999999987654433 55555555555544433
No 145
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.13 Score=43.99 Aligned_cols=118 Identities=12% Similarity=-0.030 Sum_probs=62.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CcHhhHHHHHHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVK----PNAMSYSLLVDAHL 152 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~----p~~~t~~~li~~~~ 152 (228)
|...++.+.|.+.|.+... +.| |....|-+=-.....+.+.+|...|+..... .+. .-..+++.|=.+|.
T Consensus 390 y~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 4455666666666666643 333 3444444444444556666666666554311 000 12334555555666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 027083 153 TNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 153 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
+.+..++|+..++.-.... .-|..++.++--.+...|+++.|...+..
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6666666666666544321 23555555555556666666666655544
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.23 E-value=0.031 Score=33.43 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=45.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
..+...|++++|...|++..+. . +-+...+..+-.++.+.|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~-~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ-D-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC-S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999984 2 225567777778999999999999999998754
No 147
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.71 Score=39.20 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHH
Q 027083 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALI 113 (228)
Q Consensus 35 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 113 (228)
|--+-..|.... +....+..+.+.....+- |..+|..-=..+.-.+++++|..=|++..+ +.| +.+.|-.+-
T Consensus 363 yI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 363 YIKRAAAYADEN--QSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYIQLC 435 (606)
T ss_pred HHHHHHHHhhhh--ccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHHHHH
Confidence 444455555544 333444344333333333 333454444444455566666666666554 223 233344443
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
-+.-|.+.+++++..|++.+++ ++..+..||..-..+...+++++|.+-++..+
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 4444566677777777776554 33345666666666677777777776666554
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.13 E-value=0.22 Score=39.23 Aligned_cols=98 Identities=16% Similarity=0.018 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHhh
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMS 143 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~t 143 (228)
...|...+....+.|+.++|...|+.+.+. .|+. ..+--+-..|...|++++|...|+.+.+.- .......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 566777777777789999999999999874 2443 345566678999999999999999998642 1112344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
+-.+...+...|+.++|.++++...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556677899999999999988764
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.42 Score=43.18 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHH-HHHhchhhc-------CCCCCCHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVY-FQLENLSRA-------EPPYKSVAAI 73 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~ 73 (228)
|+.|.|+.-.+-++.. ..|..+.+.|.+..+-+.+..- -.++...+. ..+. +...-
T Consensus 742 G~MD~AfksI~~IkS~---------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eak 805 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIKSD---------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAK 805 (1416)
T ss_pred ccHHHHHHHHHHHhhh---------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhH
Confidence 5666666666655544 5689999999998876655542 122221111 1110 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
.. -.....|.+++|+.+|.+.++ |..|=+.|-..|++++|.++-+.=.+-+.+ .||..--.-+-.
T Consensus 806 vA--vLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 806 VA--VLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEA 870 (1416)
T ss_pred HH--HHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHh
Confidence 11 223478999999999999988 566777888999999999988765444433 556555555566
Q ss_pred cCCHHHHHHHHHHHH-----------HC--------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 154 NRDQKAALSVIDEMV-----------NA--------GFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~-----------~~--------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.++.+.|++.|+.-. +. .-+.|...|.-.-+.+-..|+.+.|..++....+
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 677777776654321 10 0122444444444555566777777777765543
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.07 E-value=1 Score=41.50 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC------
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD------ 105 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~------ 105 (228)
...+-.|++.+...+. ...+....+......|-.+...-+..+ .+...++.+.+..+ .+.. -+..+
T Consensus 31 ~~a~~~Li~~~~~~~~--~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENL--TDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLID--SFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhh--hcccccchhHH
Confidence 4568889999977774 445544444444444433343333333 44455555555544 2222 11112
Q ss_pred -------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 106 -------------IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 106 -------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
...+-.+-.+|-+.|+.++|..+++++.+.. .-|+..-|-+-..|... ++++|++++.....
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 2345556677778899999999999998877 44788888888888888 89999888776654
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.02 E-value=0.92 Score=39.43 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 027083 68 KSVAAINCVILGCANIW-----DLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKL--------KKTFEASRVFEHLV 133 (228)
Q Consensus 68 ~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~--------~~~~~a~~~~~~m~ 133 (228)
.|...|...+.+..... +.+.|..+|++..+ ..||-. .|..+-.++... ..+..+.+..+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 38889999998876432 36789999999876 356643 333322222221 11233333333322
Q ss_pred hC-CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 134 SL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 134 ~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.. ....++..|.++--.....|++++|...+++....+ |+...|..+-..+...|+.++|...+....+.+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 123456778777666667899999999999988765 788889988899999999999999988876644
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.00 E-value=0.064 Score=32.42 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC-CHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR-DQKAALSVIDE 166 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~ 166 (228)
.+|..+=..+.+.|++++|...|++..+.. +-+...|..+-.++.+.| ++++|++.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344444444455555555555555544432 123444444444444554 35555554444
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.96 E-value=0.93 Score=38.97 Aligned_cols=155 Identities=9% Similarity=-0.009 Sum_probs=106.2
Q ss_pred cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
+..+|...|+.--|..=.+.+... +.+........-.+++++++|..+|. +|.+.|.++|+-=.++ ..-+..--.
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~i--F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~ 439 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKI--FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVL 439 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHH--HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHH
Confidence 455688888877775522333333 33333322221288999999998885 6889999999976653 333444457
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-C--CCCCHHHHHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPN--AMSYSLLVDAHLTNRDQKAALSVIDEMVNA-G--FAPSKETLKKVRRR 185 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g--~~p~~~t~~~li~~ 185 (228)
..++-+...++-.+|..+|+....++..|| ...|..+|+-=..-|+...+.++-+++... . ..|...+-..+++-
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~R 519 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDR 519 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHH
Confidence 788889999999999999999998865554 478999999999999999999988876632 1 23333333445555
Q ss_pred HHhcC
Q 027083 186 CVREM 190 (228)
Q Consensus 186 ~~~~~ 190 (228)
|.-.+
T Consensus 520 Y~~~d 524 (656)
T KOG1914|consen 520 YGILD 524 (656)
T ss_pred Hhhcc
Confidence 54443
No 154
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.94 E-value=0.32 Score=38.42 Aligned_cols=140 Identities=9% Similarity=0.095 Sum_probs=99.9
Q ss_pred cHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 027083 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI--WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEAS 126 (228)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 126 (228)
...+++..+...........|..+...+++..... .....--++.+.+....+-.++..+.-.+|+.+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35555555553222111222777888888887762 2444555566666655577899999999999999999999999
Q ss_pred HHHHHHHhC-CCCCcHhhHHHHHHHHHccCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 027083 127 RVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDE-----MVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 127 ~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t~~~li~~~~~ 188 (228)
++++.-... +..-|..-|..+|+.-...|+..-...+.++ +++.|+..+...-.++-+.+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999887665 6677999999999999999998888777765 2356777777776666655544
No 155
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.93 E-value=0.033 Score=34.71 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCc-HhhHHHHHHHHHccCCHHHHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSL----GV-KPN-AMSYSLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m 167 (228)
+|+.+-..|.+.|++++|...|++..+. |- .|+ ..+++.+-.+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666666666666666666655322 11 122 455666666667777777777766654
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.92 E-value=0.28 Score=35.21 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=73.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+=.-+...|++++|+++|+-+...... +..-|-.|=-++-..|++++|++.+....... .-|...+-.+-.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 334467789999999999998876533 66677777788888899999999998877655 2456777778889999999
Q ss_pred hhhHHHHHHHHHHcC
Q 027083 192 EESNDRVEALAKKFD 206 (228)
Q Consensus 192 ~~~a~~~~~~m~~~g 206 (228)
.+.|+..|+..+...
T Consensus 119 ~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 119 VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877643
No 157
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.94 Score=38.49 Aligned_cols=128 Identities=12% Similarity=0.174 Sum_probs=91.0
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------CcHh
Q 027083 72 AINCVILGCA--NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-------PNAM 142 (228)
Q Consensus 72 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------p~~~ 142 (228)
.|.-+-.+|+ +.+.++++...|++.+++ ++--..+||-.-..+...++++.|.+-|+......-. +.+.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 3333334443 678899999999999984 6566678888889999999999999999987654211 1222
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.--+++-.- -.+++..|..++....+. -| ....|..|-..-.+.|++++|..+|+.-..
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 223333322 348888999988876653 33 357788888888899999999999887654
No 158
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.63 Score=36.43 Aligned_cols=146 Identities=10% Similarity=-0.003 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH---
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA--- 150 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--- 150 (228)
++++.+.-..+...-....+++..++ ..+-+......|.+.--+.|+.+.|...|++..+..-+.|..+++.++.-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 55555555667777778888888874 66677788888888888889999999999887766556677777666543
Q ss_pred --HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 151 --HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 151 --~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
|.-+++...|...+.+.....- .|...-|.=.-+.--.|+..+|....+.|... .|......+++++|+-
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTT 331 (366)
T ss_pred hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHH
Confidence 3345667777777766654321 12222222222222346777888887777654 4556666666666553
No 159
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=1.6 Score=40.58 Aligned_cols=115 Identities=15% Similarity=0.055 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
..|..+-.+=.+.|.+.+|.+-|= +. -|...|.-+|+...+.|.+++..+.+.-..+...+|... +.||-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyi--ka-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYI--KA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHH--hc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 366666666666666666665432 22 256667777777777777777777665554444444443 466677
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
|++.+++.+.++++ ..|+......+=+-|...+.++.|+-++..
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 77777665554433 245555555555555555555555554443
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.70 E-value=0.39 Score=43.36 Aligned_cols=130 Identities=18% Similarity=0.121 Sum_probs=76.5
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCA--NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 127 (228)
...++....+.....| | ..|..+++++. +.|..++|..+++....- +.. |..|..++-.+|...+..++|..
T Consensus 25 fkkal~~~~kllkk~P---n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHP---N-ALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHCC---C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4455555555544343 3 25566666665 567777777766666542 322 66777777777777777777777
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 188 (228)
+|++..+. -|+-.--..+..+|.|.+++.+--++=-+|-+ .+.-....|.++++....
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 77776543 56666666677777776665443333222222 223345666666665544
No 161
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.76 Score=36.00 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 027083 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114 (228)
Q Consensus 35 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 114 (228)
.++++.++--.| +....+..+.+.....++ .+......+...-.+.||.+.|...|+...+. .-+.|..+++.++.
T Consensus 180 my~~~~~llG~k--Ey~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 180 MYSMANCLLGMK--EYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHhcch--hhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHH
Confidence 344555444444 333333333333333333 37777888888888999999999999988874 56677777776664
Q ss_pred -----HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 115 -----AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 115 -----~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
.|.-.+++.+|.+.|++..... ..|++.-|.---+..--|+..+|.+.+..|+.. .|...+-++++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3556678899999998876553 235566666555556678999999999998874 45555544443
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.41 Score=37.91 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=81.5
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
..+.+++++|+..|.+... +.| |.+-|..--.+|++.|.++.|.+=.+...+.. ..-..+|..|=.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4567889999999999876 444 56677888889999999999998888776543 235678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 188 (228)
+|.+.|+.-.+ +.|+-.+|..=++....
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 99999885544 78888888877766543
No 163
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=1.7 Score=40.48 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..|+.|-.+=.+.|+ ..++...+.+ .. |...|.-++..+.+.|.+++-.+.+.-.+++ .-.|. .=+.|
T Consensus 1105 ~vWsqlakAQL~~~~--v~dAieSyik-----ad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eL 1172 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGL--VKDAIESYIK-----AD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSEL 1172 (1666)
T ss_pred HHHHHHHHHHHhcCc--hHHHHHHHHh-----cC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHH
Confidence 457777777666664 2233222221 11 4557888888888888888877765544443 33343 33577
Q ss_pred HHHHHhcCCHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVF 129 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~ 129 (228)
|-+|++.+++.+.+.+.
T Consensus 1173 i~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhchHHHHHHHh
Confidence 88888888777766554
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.60 E-value=1.4 Score=38.33 Aligned_cols=144 Identities=19% Similarity=0.086 Sum_probs=91.7
Q ss_pred cchhHHHHHHHHHhhCh---hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhc
Q 027083 31 PFTSLYPLVVACSRKGF---ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI--------WDLDRAYQTFEAVGSS 99 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~ 99 (228)
+...|...+.+...... .+...+...+++.....|- +...|..+--++... .++..+.+..++....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~--~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD--FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 35788888888655332 3345555555555554443 445555443333221 1233444444443321
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 027083 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179 (228)
Q Consensus 100 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 179 (228)
.....+...|.++--.....|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++... +.|..-||
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 1123345667766555666799999999999998875 7899999999999999999999999987655 45655555
Q ss_pred H
Q 027083 180 K 180 (228)
Q Consensus 180 ~ 180 (228)
.
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 4
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.55 E-value=0.64 Score=39.15 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
+...|+.+=.+|.+.|++++|...|++... +.|+. .+|..+-.+|.+.|+.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555443 23432 2355555555555555555555555543
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.45 E-value=0.19 Score=30.59 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.|.+.++++.|.++++.+...+. .+...|...-.++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555544421 2344444444445555555555555555443
No 167
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.40 E-value=0.34 Score=38.27 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN-----AGFAPSKETLKKV 182 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~l 182 (228)
++..++..+..+|+++.+...++++.... .-|...|-.+|.+|.+.|+...|++.++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46778888999999999999999998775 34889999999999999999999999888775 5899999888887
Q ss_pred HHHHHh
Q 027083 183 RRRCVR 188 (228)
Q Consensus 183 i~~~~~ 188 (228)
.+....
T Consensus 234 ~~~~~~ 239 (280)
T COG3629 234 EEILRQ 239 (280)
T ss_pred HHHhcc
Confidence 777443
No 168
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.13 Score=41.11 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSF--GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
+..+...++..-....+++++...+-..+... ...|+... .++++-+. .-+++.+..++..-.+.|+.||..|++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444444444444566777766666665421 12233222 22333333 3356677777777777777777777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
+|+.+.+.++..+|.++...|..+.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777766543
No 169
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.63 Score=40.04 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=90.1
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
....+.+..++|-++....+.++|..+++.|==.|--.|+++.|...|+...+.. +-|-.+||.|=..++...+-++|+
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHH
Confidence 3344667788888887765655777777777777888899999999999988764 237788999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 162 SVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 162 ~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
..+++..+ ++|+ +.+..-|--+|...|.+.+|...+-..
T Consensus 485 sAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 485 SAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99998776 5665 233334555778889988888765443
No 170
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=1.3 Score=36.15 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=24.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI-YAFGKLKKTFEASRVFE 130 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~ 130 (228)
.+.+..|...+|.++|-++.. ..+ -|..+|..++ ++|.+++.++.|+.++-
T Consensus 401 QAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 444445555555555555443 111 2334443333 45555555555555543
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.20 E-value=2.1 Score=37.91 Aligned_cols=141 Identities=7% Similarity=-0.124 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|......=-..|..++...+|.+... .++-....|-...+.+...|++..|..++.+.-+... .+...|-+-+
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaav 625 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAV 625 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 444555544444455666666666666665 2444445555555666666777777777766655432 2555666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKN 216 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 216 (228)
..-.+..+++.|..+|..-+. ..|+...|..-+..-.-.++.++|.++.+...+ ..|+.+-+..
T Consensus 626 Kle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~l 689 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWL 689 (913)
T ss_pred HHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHH
Confidence 666677777777777764443 456666666555555555666666666655443 2344444433
No 172
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.20 E-value=2 Score=37.82 Aligned_cols=168 Identities=10% Similarity=0.049 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS--VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
..|.-+-+-.++.- +....+..-..+.++....+| -..|++|-+.|.+.|+++.|.++|++-..+ ..+..-|+
T Consensus 211 qlw~elcdlis~~p--~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt 285 (835)
T KOG2047|consen 211 QLWLELCDLISQNP--DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFT 285 (835)
T ss_pred hHHHHHHHHHHhCc--chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHH
Confidence 34655555555544 233333232223333333334 357899999999999999999999998764 35666677
Q ss_pred HHHHHHHhcCCHHHHH----------------------HHHHHHHhCC-----------CCCcHhhHHHHHHHHHccCCH
Q 027083 111 ALIYAFGKLKKTFEAS----------------------RVFEHLVSLG-----------VKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~----------------------~~~~~m~~~g-----------~~p~~~t~~~li~~~~~~g~~ 157 (228)
.+.++|+....-..+. .-|+.+.... -..+..+|..-+.. ..|++
T Consensus 286 ~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~ 363 (835)
T KOG2047|consen 286 QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNA 363 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCCh
Confidence 8888877554322221 1222221110 01122233333321 23556
Q ss_pred HHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 158 KAALSVIDEMVNAGFAP------SKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
.+-...+.+..+. +.| -...|..+-+-|-+.|+++.|+.+++...+-.++
T Consensus 364 ~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 364 AEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 6666666666542 112 2345666677777888888888888887776654
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.16 E-value=2.1 Score=37.75 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
.+|.-.|...-..+-++.+.+++++..+ +.|. .-+--|..+++.+++++|-+-+...
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~--~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK---VAPE--AREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh---cCHH--HHHHHHHHHHhccchHHHHHHHHHh
Confidence 3555555555566666666666666654 2232 3566666666666666666655543
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.03 E-value=1.4 Score=35.02 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=65.4
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhc---CCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CcHh-hHH
Q 027083 78 LGCANI-WDLDRAYQTFEAVGSS---FGLTPD--IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-----PNAM-SYS 145 (228)
Q Consensus 78 ~~~~~~-~~~~~a~~~~~~m~~~---~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-t~~ 145 (228)
..|-.. |+++.|.+.|++...- .+ .+. ..++..+...+.+.|++++|..+|++....-.. ++.. .|-
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 333344 5666666666654321 12 111 335677778899999999999999998775332 2222 222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNA--GFAPS--KETLKKVRRRCVR 188 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~t~~~li~~~~~ 188 (228)
..+-++...|++..|.+.|++.... ++..+ ......||.+|-.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 3344667789999999999998754 44443 3556666777644
No 175
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.01 E-value=0.16 Score=45.10 Aligned_cols=105 Identities=8% Similarity=0.026 Sum_probs=73.1
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
.....+.+|..+.+.+..+ +.-+.-|.-+-+-|...|+++-|+++|.+- ..++--|..|.+.|+|++|
T Consensus 743 i~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 4456677888888877654 233445777889999999999999999663 2356778899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
.++-.+.. |-......|-+=.+-+-..|.+.+|++++
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 98765443 33334455555444455556666666554
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=1.4 Score=35.13 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhC
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKG 46 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 46 (228)
|+.++|+..|+...+. +.+.|...||.-+..|.+..
T Consensus 158 gqyEaAvqkFqaAlqv---------sGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQV---------SGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred ccHHHHHHHHHHHHhh---------cCCCchhHHHHHHHHHhhhh
Confidence 4555555555555555 44444445555554444443
No 177
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.23 Score=39.68 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHhhCh-hcHHHHHHHHhchhhc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhH
Q 027083 32 FTSLYPLVVACSRKGF-ETLDSVYFQLENLSRA-EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 109 (228)
..+-..++..-.+... .+....+..++..... ..+....++|-.++ ..=+++++..+...=.. .|+-||..++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIq-YGiF~dqf~~ 138 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQ-YGIFPDQFTF 138 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcch-hccccchhhH
Confidence 3444445544443333 3444444444443322 23333344432222 23366777777777666 5888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
+.+|+.+.+.+++.+|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888887776544
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.89 E-value=0.35 Score=29.40 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 143 (228)
..|.+.++++.|.++++.+..- -+.+...+...=.++.+.|++++|...|+...+. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 5678899999999999999873 2335556777778899999999999999998876 454443
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.83 E-value=0.26 Score=29.66 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK-KTFEASRVFEHLVS 134 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 134 (228)
+..+|..+=..+...|++++|...|++..+. . +-+...|..+=.+|.+.| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-D-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-S-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888888889999999999999999873 2 235667888888899999 79999999988764
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.77 E-value=0.85 Score=31.26 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=57.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHHHHHHHHc
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIH--SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSLLVDAHLT 153 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~ 153 (228)
+-..|+.++|..+|++-... |...... .+-.+-..|...|++++|..++++.... .|+ ......+--++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 34567777777777777763 6554422 3333445677777777777777776654 233 1111112234556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 187 (228)
.|+.++|.+.+-.... ++...|..-|..|+
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777777776654332 33335555555554
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.68 Score=40.08 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH--HH
Q 027083 37 PLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA--LI 113 (228)
Q Consensus 37 ~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~--li 113 (228)
.++.-..+.+. .+..+++....++....+. +...+.+=+-+..+.+.+++|+.+.+.-. -..+++. +=
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~-------~~~~~~~~~fE 84 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNG-------ALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcc-------hhhhcchhhHH
Confidence 33444444443 4677777777777766643 66677777777888888888885543322 1122333 34
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhCCCCCcHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 027083 114 YAFG--KLKKTFEASRVFEHLVSLGVKPNAM-SYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 114 ~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
++|| +.+..|+|...++ |..++.. +-..--..+.+.|++++|.++++.+.+++.
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 5665 6688888888887 3333333 555555667788999999999998887664
No 182
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.68 E-value=2.4 Score=36.72 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=94.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 027083 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142 (228)
Q Consensus 64 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 142 (228)
.+..+|..+.+.|=-.|--.|+++.|.+.|+.... ++|+ ..+||-|=-.++...+.++|...|++..+....--.+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 33334666777777777788999999999999975 4665 5589999999999999999999999998764332344
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH---HCC------CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMV---NAG------FAPSKETLKKVRRRCVREMDEESNDRV 198 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~---~~g------~~p~~~t~~~li~~~~~~~~~~~a~~~ 198 (228)
=||.-|+ |...|.+++|.+.|-+.. ..+ -.++...|.+|=.++.-.++.+.+.++
T Consensus 501 RyNlgIS-~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 501 RYNLGIS-CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ehhhhhh-hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4666665 789999999988776643 331 223456787777677666766644443
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.58 E-value=0.18 Score=31.25 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=50.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GF-APS-KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
..+|+.+-..|.+.|++++|++.|++..+. |- .|+ ..++..+-..+...|+.++|.+.++...+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457888999999999999999999987643 21 233 46777778889999999999999887654
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.54 E-value=1.1 Score=37.70 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=47.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA----MSYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
+...++.+-.+|.+.|++++|...|++..+. .|+. .+|..+-.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777888888888888888876654 4553 35777888888888888888888777664
No 185
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.48 E-value=2.1 Score=34.41 Aligned_cols=121 Identities=11% Similarity=0.149 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCcH--hhHHHHHHHHHccCC-
Q 027083 86 LDRAYQTFEAVGSSFGL--TPDIHSYNALIYAFGKLKK----TFEASRVFEHLVSLGVKPNA--MSYSLLVDAHLTNRD- 156 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~- 156 (228)
...+..+|+.|++++.+ .++.+++.+++.. ..++ .+.++.+|+.+.+.|+..+- .+-+.++..+-....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 56799999999986432 5677788888766 3333 46688899999998877543 444445544433333
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCC---hhhHHHHHHHHHH-cCCC
Q 027083 157 -QKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMD---EESNDRVEALAKK-FDIR 208 (228)
Q Consensus 157 -~~~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~~~---~~~a~~~~~~m~~-~g~~ 208 (228)
...+.++++.+++.|+++....|..+ +-++...+. ++....+.+.+.+ .|+.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 34788999999999999988887754 223333333 4444455555554 3444
No 186
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=3 Score=36.13 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=98.8
Q ss_pred HHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CC---CC-CHHhHHHHHHHH
Q 027083 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF-GL---TP-DIHSYNALIYAF 116 (228)
Q Consensus 42 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~---~p-~~~~~~~li~~~ 116 (228)
|.+.+....++.++.. .....|. |....+-+=-..-..+.+.+|...|+...... .+ ++ -..+++.|=.+|
T Consensus 390 y~~t~n~kLAe~Ff~~--A~ai~P~--Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQ--ALAIAPS--DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHhccHHHHHHHHHH--HHhcCCC--cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 4444544444444432 2333333 55666655555556788999999998876210 11 11 234578888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 187 (228)
.+.+.+++|...|+...... .-|..|+.++--.|...|+++.|.+.|.+ ...++||-.+-..++..+.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHH
Confidence 99999999999999987664 45899999999999999999999999984 4458999988888887543
No 187
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.40 E-value=0.87 Score=29.76 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCcchhhHHHHHHHH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK-KFDIRMNTENRKNILFNL 221 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~l 221 (228)
-++.+-++.+....+.|+.....+.+++|.|.+++..|.++++-++ +.|. +..+|..++.-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 3444455555555666666666666666666666666666666544 3332 334555555443
No 188
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.30 E-value=4.5 Score=37.63 Aligned_cols=136 Identities=11% Similarity=0.025 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCCCCCHHh-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---h
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSS---FGLTPDIHS-Y-NALIYAFGKLKKTFEASRVFEHLVSLGVKPNA---M 142 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~-~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~ 142 (228)
..+..+-......|+.+.|.+.+++...- .+..+.... . ...+..+...|+.+.|...+.+.......... .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 34444555667889999999998887531 111111101 1 11234456688999999998775542211111 1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVN----AGFAPSK-ETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.+..+-.++...|+.++|...+++... .|..++. .+...+-.++.+.|+.++|...+....+..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 134566677888999999999888764 2433332 455555667888999999998888877654
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.27 E-value=2 Score=38.30 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=100.4
Q ss_pred cHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHH
Q 027083 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASR 127 (228)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~ 127 (228)
+.......++......+. -..+|-.+=.+..+.++++.|.+.|..-.. ..|| ...||++=.+|.+.+.-.+|.+
T Consensus 500 ~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred hHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 455555566555555555 344666655556688999999999998875 4565 5589999999999999999999
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG-FAPSKETLKKVRRRCVR 188 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~ 188 (228)
.+.+..+.+ .-+...|...+....+-|.+++|++.++++.+.. -+.|...-..++....+
T Consensus 575 ~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 575 KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999998887 5577888888888899999999999999887432 22366666666555443
No 190
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.24 E-value=1.3 Score=30.99 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
...+++.|.+.+.++++.-++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhh
Confidence 334555555555555555555443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.18 E-value=1.2 Score=30.52 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=71.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHHHHh
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPN--AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS---K-ETLKKVRRRCVR 188 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~-~t~~~li~~~~~ 188 (228)
++-..|+.++|..+|++....|.... ...+-.+-+++...|++++|..+|++..... |+ . .....+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 45567999999999999999886654 3456667778888999999999999877542 44 1 111222346778
Q ss_pred cCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 189 EMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 189 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
.|+.++|...+-...- ++...|..-|...
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 8999999887665443 3444666665543
No 192
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.12 E-value=1.2 Score=35.32 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhhHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-----LGVKPNAMSYSL 146 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 146 (228)
++..+...+...|+.+.+...+++.... =+-|...|..+|.+|.+.|+...|.+.|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4566777788889999999999998863 345888999999999999999999999998866 599999999888
Q ss_pred HHHHHH
Q 027083 147 LVDAHL 152 (228)
Q Consensus 147 li~~~~ 152 (228)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 888733
No 193
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.01 E-value=2.5 Score=33.56 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCcHhhHHHHHH
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK-LK-KTFEASRVFEHLVSL-GVKPNAMSYSLLVD 149 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-g~~p~~~t~~~li~ 149 (228)
|..+++ ....+-+|+++|+...-+..+--|..+...+++.... .+ ....-.++.+.+.+. +-.++..+--.+|+
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666665 4557888999999543312577788888888888776 22 344445555555543 45789999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHH-----HHHcCCCcchhhHHHHHHH
Q 027083 150 AHLTNRDQKAALSVIDEMVNA-GFAPSKETLKKVRRRCVREMDEESNDRVEAL-----AKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~ 220 (228)
.+++.+++.+-.++.+.-... +..-|...|...|+.....|+.+..+.+... +.+.|+..+...-..+-+-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 999999999999988776654 6677999999999999999998887777543 4456677666555544433
No 194
>PLN02789 farnesyltranstransferase
Probab=93.97 E-value=2.8 Score=34.04 Aligned_cols=166 Identities=8% Similarity=-0.000 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD--LDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
.+|+.--.++.+.|. ...+++....+.....+- +..+|+..--.+.+.|. .+.+..+.+.+.+. -.-|...|+
T Consensus 72 taW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npk--nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~ 146 (320)
T PLN02789 72 TVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPK--NYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWS 146 (320)
T ss_pred HHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCc--chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHH
Confidence 345544444444442 234455444444443333 66677755444555554 26678888887762 234666888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN---RDQ----KAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~----~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
..--.+.+.|+++++...++++.+.+.. |...|+.....+.+. |.. +...+...+.+... .-|...|+-+-
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~ 224 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLR 224 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHH
Confidence 8888888889999999999999887754 677777766655443 222 34555555555432 23567777777
Q ss_pred HHHHhc----CChhhHHHHHHHHHHc
Q 027083 184 RRCVRE----MDEESNDRVEALAKKF 205 (228)
Q Consensus 184 ~~~~~~----~~~~~a~~~~~~m~~~ 205 (228)
..+... +...++........+.
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcc
Confidence 777662 3334566666665553
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=93.91 E-value=1.7 Score=31.45 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=44.5
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|..+|.-...- +. -|..-|..|=.+|-..+.+++|...|........ -|+..+--.=.++...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~-d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIY-DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHh-Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 456666666666666541 11 1122233444445555666666666665443332 23333444445666666666666
Q ss_pred HHHHHHHH
Q 027083 162 SVIDEMVN 169 (228)
Q Consensus 162 ~~~~~m~~ 169 (228)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655544
No 196
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.80 E-value=0.91 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.+-++.+....+.|+.....+.+++|.|.+++..|.++++-+.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444445555555555555566655555555555555544
No 197
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=4.4 Score=35.37 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=98.4
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHhhcCCCC
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFE--------AVGSSFGLT 103 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~~~~~ 103 (228)
...+.+|+..+.+........+-..+...-. ..|.-+..+--.++......|+++.|.+++. .+.+ .+..
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~ 416 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFAD-GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHL 416 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccC
Confidence 3445666666666543212222222222222 2232245566667777788899999999888 5544 2444
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVKPN----AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE 177 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 177 (228)
| .+-.+++..+.+.++-+.|..++++.... .-.+. ..++.-+...=.+.|..++|..+++++.+.. .+|..
T Consensus 417 P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~ 493 (652)
T KOG2376|consen 417 P--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTD 493 (652)
T ss_pred h--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHH
Confidence 4 44566777788888877777777765432 00122 2233333344456788999999999888753 56788
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH
Q 027083 178 TLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 178 t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
+...++.+|++. +.+.|+.+-.
T Consensus 494 ~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 494 LLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHhc-CHHHHHHHhh
Confidence 888888888886 4566655543
No 198
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.71 E-value=1.3 Score=31.34 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-----CCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcHhh
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFG-----LTPDIHSYNALIYAFGKLKK-TFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t 143 (228)
....|++|+-.+.-++......+++.+..= . -..+..+|++++++.++... ---+..+|+.|++.+.+++..-
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l-~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~d 117 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFL-NTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHh-hHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 456788888888888888888888877430 0 01234456666666655544 2234556666666556666666
Q ss_pred HHHHHHHHHcc
Q 027083 144 YSLLVDAHLTN 154 (228)
Q Consensus 144 ~~~li~~~~~~ 154 (228)
|..||.++.+.
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 66666665554
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.48 E-value=2.2 Score=33.93 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=81.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhh
Q 027083 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEES 194 (228)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~ 194 (228)
..+.+++++|...|.+..... .-|++-|.---.+|.+-|..+.|.+-.+.-.. +-|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 467899999999999998764 34788888889999999999999887765554 3343 4788888889999999999
Q ss_pred HHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 195 NDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 195 a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
|.+.|... ..+.|+.++|+.=+...
T Consensus 168 A~~aykKa--LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKA--LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhh--hccCCCcHHHHHHHHHH
Confidence 99987655 45788888998766544
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.35 E-value=4.5 Score=34.35 Aligned_cols=144 Identities=16% Similarity=0.115 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhH-HH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY-NA 111 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ 111 (228)
.+|.+.|+.--+..=..++..++.- ....+..-+++++++++|..++. ||...|..+|+-=... -||...| +-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k--~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIK--LRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH--HhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 3577777777665422344444433 33333334489999999998874 7888999999875542 3555544 66
Q ss_pred HHHHHHhcCCHHHHHHHHH----HHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 027083 112 LIYAFGKLKKTFEASRVFE----HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 187 (228)
.+.-+...++-+.|..+|+ ++.+... -..|..+|+-=..-|+...+..+=+.|.. +.|-..+......-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQL---KRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7778889999999999999 4433322 46899999988899999888887777765 3454444444444443
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.25 E-value=2.6 Score=37.64 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAV 96 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m 96 (228)
..|+.+=..++....+++|.+.|..-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555443
No 202
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.19 E-value=1.2 Score=37.91 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
.....+.|+++.|.++. .-.++...|..|-+...+.|+++-|++.|++.. -|..|+--|.-.|+
T Consensus 325 FeLAl~lg~L~~A~~~a-------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 325 FELALQLGNLDIALEIA-------KELDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGD 388 (443)
T ss_dssp HHHHHHCT-HHHHHHHC-------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-
T ss_pred hHHHHhcCCHHHHHHHH-------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCC
Confidence 34444556666655542 223355567777777777777777776665532 24455555566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 027083 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 198 (228)
.+...++.+.....|- +|..+.++.-.|++++..++
T Consensus 389 ~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 389 REKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 6665555555444442 45555555566666554443
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.02 E-value=2.2 Score=29.85 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS---YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
+..-||-+|--....-+-+-..++++.+-+- .|... .-.+|.+|.+.| .+....+
T Consensus 33 ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~C~NlKrVi~C~~~~n------------------~~se~vD 90 (161)
T PF09205_consen 33 NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISKCGNLKRVIECYAKRN------------------KLSEYVD 90 (161)
T ss_dssp -HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-S-THHHHHHHHHTT---------------------HHHH
T ss_pred CccccceeeeecchhhchhHHHHHHHHHhhh----cCchhhcchHHHHHHHHHhc------------------chHHHHH
Confidence 4555666666555555555555565555442 12221 123333333333 3556677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
.-++....+|+-+.-.++.+++.+ +-.|++...-.+-.+|.+.|+..++..++...-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 778888888988888888888776 34778888888999999999999999999999998875
No 204
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.96 E-value=2.4 Score=30.09 Aligned_cols=98 Identities=9% Similarity=0.127 Sum_probs=72.0
Q ss_pred HhhcCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCcHhhHHHHHHHHHccCCH-HHHHHHHHHH
Q 027083 96 VGSSFGLTPDIH--SYNALIYAFGKLKKTFEASRVFEHLVSLGV-----KPNAMSYSLLVDAHLTNRDQ-KAALSVIDEM 167 (228)
Q Consensus 96 m~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m 167 (228)
|.+ .+..++.. ..|+++.-...-+.+....++++.+..-.. ..+..+|.+++.+.+..... --+..+|+-|
T Consensus 28 ~~~-~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQE-ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhh-cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 444 26666654 458888888888888888888887743211 24667899999999777763 4457788889
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 168 VNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 168 ~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
++.+.+++..-|..+|.++.+....+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 988899999999999999887744433
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=3.7 Score=34.03 Aligned_cols=125 Identities=15% Similarity=0.057 Sum_probs=86.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcC----CC---------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSF----GL---------TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~----~~---------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+.+.+.|++..|..-|+...+-. +. ..-..+++.+--+|.|.+++..|.+..+.....+ .+|.-.-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 35567778887777777643311 11 2235578889999999999999999999988765 4566666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC-hhhHHHHHHHHHHc
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV-REMD-EESNDRVEALAKKF 205 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~-~~~a~~~~~~m~~~ 205 (228)
-.-=.++...|+++.|+..|+.+.+ +.|+-..-..=|..|. +... .+....+|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666788889999999999998876 5676555555444444 3333 34445777777653
No 206
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.37 E-value=6 Score=36.85 Aligned_cols=130 Identities=10% Similarity=-0.043 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY--AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
+...+-.+-..|++..+++.|..+.-...+ .-+.-...+|-+-. .|.+.++..+|..-|+...+... .|...|..
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~g 601 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLG 601 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHH
Confidence 556666677777777777777776222221 11112222333322 35566677777777776665543 37788899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR--RCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~--~~~~~~~~~~a~~~~~~m~~ 204 (228)
+..+|.++|+...|.++|.+... +.|+. +|..... .-+..|...++...++.+..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999876543 44542 2222221 23456777777766666554
No 207
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.35 E-value=2.7 Score=30.96 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI--HSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
..+..+-..|++.||.+.|.+.|.++... ...|.. ..+-.+|......+++..+....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666667777777777777777777653 333332 2455666667777777777666665543
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.20 E-value=6.6 Score=33.35 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++.+|..+|-+.-+.....+-. +....--+.++++|...+-+..+. .........+. ..|-.+..+..
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~----lkeEvl~grilnAffl~nld~Me~---~l~~l~~~~~~----s~~l~LF~~L~ 88 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFL----LKEEVLGGRILNAFFLNNLDLMEK---QLMELRQQFGK----SAYLPLFKALV 88 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHH----HHHHHHhhHHHHHHHHhhHHHHHH---HHHHHHHhcCC----chHHHHHHHHH
Confidence 56777888887766553222111 111233567899999887433333 33333333332 24555555543
Q ss_pred --HcCCHHHHHHHHHHHhhc-CCCCC------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHh
Q 027083 82 --NIWDLDRAYQTFEAVGSS-FGLTP------------DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKPNAM 142 (228)
Q Consensus 82 --~~~~~~~a~~~~~~m~~~-~~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~ 142 (228)
+.++.+.|.+.+.....+ .+.+| |-..=+..+.++.+.|++.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 667888888888877652 02222 2222277788999999999999888887654 3346899
Q ss_pred hHHHHHHHHHccCCH---------------HHHHHHHHHHHH--C----CCCCCHHHHHHHHHHHHhc--CChhhHHHHH
Q 027083 143 SYSLLVDAHLTNRDQ---------------KAALSVIDEMVN--A----GFAPSKETLKKVRRRCVRE--MDEESNDRVE 199 (228)
Q Consensus 143 t~~~li~~~~~~g~~---------------~~a~~~~~~m~~--~----g~~p~~~t~~~li~~~~~~--~~~~~a~~~~ 199 (228)
+||.++-.++++=-. +.+.-..++|.. . .+.|-...+..+++..+-. ..+.--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 999977777764211 222222333331 1 4667777777777766544 2333334444
Q ss_pred HHHHHcCCCcc
Q 027083 200 ALAKKFDIRMN 210 (228)
Q Consensus 200 ~~m~~~g~~~~ 210 (228)
..=.+.-+.|+
T Consensus 249 ~~We~~yv~p~ 259 (549)
T PF07079_consen 249 ENWENFYVHPN 259 (549)
T ss_pred HHHHhhccCCc
Confidence 44444555554
No 209
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.16 E-value=3.6 Score=30.27 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA--MSYSLLVDAHLTNRDQKAALSVIDEMVNA---GFAPSKETLKKV 182 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~l 182 (228)
.+..+-+-|++.|+.++|.+.|.++......|.. ..+-.+|....-.|++..+...+.+.... |-.++...--.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5667777888888888888888888776555443 34667777788888888887777666543 222222222222
Q ss_pred HHHHH--hcCChhhHHHHHHHHH
Q 027083 183 RRRCV--REMDEESNDRVEALAK 203 (228)
Q Consensus 183 i~~~~--~~~~~~~a~~~~~~m~ 203 (228)
..++. ..+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 33322 3467777776665543
No 210
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.96 E-value=6.4 Score=35.44 Aligned_cols=131 Identities=11% Similarity=-0.035 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLV 148 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li 148 (228)
...|...-..+.+.+..++|...+.+..+ -.......|.-.=..+...|..++|...|...... .| ++.+-.++-
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala 725 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 34455555666677777777777777665 23334445555556667777778887777766554 33 344566677
Q ss_pred HHHHccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALS--VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+.+.|+...|.. ++.++.+.+ .-+...|-.+=..+-..|+.+.|-..|......
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77777777766666 777766643 235677777777777778888877777666553
No 211
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.92 E-value=11 Score=35.21 Aligned_cols=200 Identities=13% Similarity=0.013 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHH-HHhchhhc-CCCC-C-CHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYF-QLENLSRA-EPPY-K-SVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~-~~~~~~~~-~~~~-~-~~~~~~~ll 77 (228)
|++++|...+++........+.. .....+.+.+-..+...|+.+.+..+. ........ ..+. + ....+..+-
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVY----HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcch----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 67777777777765542211110 001123445566677777533222221 11111111 1110 1 223344444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcC-CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhhH-----HHHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSF-GLTP--DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PNAMSY-----SLLV 148 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~-~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~-----~~li 148 (228)
..+...|++++|...+.+...-. ...+ ....+..+-..+...|+.+.|.+.+++....... .....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 45667799999999988865410 1112 2334455556788999999999998887542111 111111 1122
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+...|+.+.|.+++............ ..+..+..++...|+.++|...+......
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445688999999988765532211111 11345566778889999999888877654
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=5.7 Score=31.91 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhC------------
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI-YAFGKLKKTFEASRVFEHLVSL------------ 135 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~------------ 135 (228)
+......+-.+|-...++..|-..+++... ..|-..-|..-- .++-+.+.+.+|.++...|...
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455555555566666667777777766653 234433332211 2333444444444444433220
Q ss_pred ------CC----------CC---cHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhH
Q 027083 136 ------GV----------KP---NAMSYSLLVDAHLTNRDQKAALSVIDEMVNA-GFAPSKETLKKVRRRCVREMDEESN 195 (228)
Q Consensus 136 ------g~----------~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a 195 (228)
+- .| +..+-+..-...-+.|+.+.|.+-|+...+- |..| ...||..+..| +.++...|
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasA 197 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASA 197 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHH
Confidence 00 02 2223333333334789999999999987765 5554 56788666555 55778899
Q ss_pred HHHHHHHHHcCCCcch
Q 027083 196 DRVEALAKKFDIRMNT 211 (228)
Q Consensus 196 ~~~~~~m~~~g~~~~~ 211 (228)
......+++.|++-.+
T Consensus 198 Lk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHP 213 (459)
T ss_pred HHHHHHHHHhhhhcCC
Confidence 9999999999887544
No 213
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.59 E-value=2.6 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 89 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
..+-++.+.. ..+.|+.....+.+++|-+.+++.-|.++|+-.
T Consensus 29 ~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 29 LRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444444 244455555555555555555555555555444
No 214
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.07 E-value=3.9 Score=28.48 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 027083 76 VILGCANIWDLDRAYQTFEAV 96 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m 96 (228)
++..|-+.+-++++.-++..+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhh
Confidence 445555555555555555444
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.02 E-value=9.4 Score=32.85 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=80.9
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhCC---CCCcHhh
Q 027083 72 AINCVILGCAN----IWDLDRAYQTFEAVGSSFGLTPDIHSYNALI-YAFGKLKKTFEASRVFEHLVSLG---VKPNAMS 143 (228)
Q Consensus 72 ~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t 143 (228)
+|+..+..++. ..+.+.|.++++++..+ -|+...|.-.- +.+...|++++|.+.|++..... .......
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~ 307 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLC 307 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHH
Confidence 34444444443 35678899999998875 58877776655 34667788999999998654321 1122333
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------hhHHHHHHHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC-VREMDE-------ESNDRVEALAKK 204 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-~~~~~~-------~~a~~~~~~m~~ 204 (228)
+--+.-++.-.+++++|.+.|..+.+.. ..+..+|.-+..+| ...++. ++|..++..+-+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4444445677888999999998888642 23455555555444 334666 666666655543
No 216
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=9 Score=32.25 Aligned_cols=145 Identities=8% Similarity=-0.005 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH-HHHHHhc-CCHHHHHHHHHHHHhCCCCCc-HhhHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL-IYAFGKL-KKTFEASRVFEHLVSLGVKPN-AMSYS 145 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~t~~ 145 (228)
+...|--|+++|...|.+++|.-.-++..+. ..-+..+.+.+ -..+.-- ..-++|.++++.-.+. .|+ .-.-+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 6778999999999999999888777776652 34455555444 1233222 2347788888775543 454 34456
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
.+-.-|.+.|..+++..+++.-.. ..||....+.|-+.+.-.+.++++...|....+ +.|...--..-++-|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHH
Confidence 777778888999999999886543 579999999999988888888888888776554 334444333333333
No 217
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.69 E-value=0.053 Score=38.19 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
+|+.+.+.+.++.....++..... +...+....|.++..|++.+..+..+++++. .+..-...++..|-+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 566666677777777777777764 5556677788888888888777777777751 22244466777777778
Q ss_pred CHHHHHHHHHHHH
Q 027083 156 DQKAALSVIDEMV 168 (228)
Q Consensus 156 ~~~~a~~~~~~m~ 168 (228)
.++.+.-++..+.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8877777776544
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.68 E-value=14 Score=34.13 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEA 95 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~ 95 (228)
||-.--..+-..+|++.|++.|+.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHh
Confidence 554444555556677777766664
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=7.5 Score=30.95 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN---RDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
-|...|--|=..|...|+++.|..-|..-.+.- .+++..+..+-.++..+ ..-.++.++|+++.... .-|+.+-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 366678888888888888888888888876642 23444444444444332 23467778888777532 23456666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 181 KVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 181 ~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
.|-..+...|++.+|...++.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 666678888888888888888887553
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.51 E-value=12 Score=33.22 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
..++-.+...+-..|+.+.|....+.... -.|+.+ .|-.=-+.+..+|+++.|..++++..+-. .||...-+-=.
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 33444566777789999999999988764 245544 34444477889999999999999987654 45666555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
.-..+.++.++|.++.....+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 667788999999999988888775
No 221
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.49 E-value=6.9 Score=30.40 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNA--GFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
-.-|.+.|.+.-|..-++.+.+. +-+........++.+|...|..+++..+...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34467778888888888888754 444456777788899999999999888776654
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.46 E-value=7.6 Score=30.80 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 33 TSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
.+...|+.+|...+. .....+......+....+-+ ..++-.-|..+.+.++.+.+.+++.+|... +.-....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHH
Confidence 457778888888875 33334444444444444432 346666677777799999999999999984 4434556666
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCcHhh-------HHHHHHHHH----ccCCHHHHHHHHHHHHHC-CCCCCH
Q 027083 112 LIYAF---GKLKKTFEASRVFEHLVSLGVKPNAMS-------YSLLVDAHL----TNRDQKAALSVIDEMVNA-GFAPSK 176 (228)
Q Consensus 112 li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~t-------~~~li~~~~----~~g~~~~a~~~~~~m~~~-g~~p~~ 176 (228)
++..+ .... ...|...++.+....+.|.... .-.++..-. ....++...+++....+. +-+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 66655 4433 4567777777766656666541 111111110 111245555556543332 333344
Q ss_pred HHHHHHH-------HHHHhcCChhhHHHHHHHHH
Q 027083 177 ETLKKVR-------RRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 177 ~t~~~li-------~~~~~~~~~~~a~~~~~~m~ 203 (228)
.+-.++. ..+.+.++++.|.+.++...
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333332 34567789999998887654
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.27 E-value=11 Score=32.43 Aligned_cols=142 Identities=9% Similarity=0.011 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-----HHhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcHh
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-----IHSYNALIYAFGKL----KKTFEASRVFEHLVSLGVKPNAM 142 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~ 142 (228)
.+..+++..+=.||-+.+++.+.+-.+..++.-. ..+|+.++..++-. ...+.|+++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 5667888888889999999999887664344332 34567777666544 5688899999999876 68888
Q ss_pred hHHHHHHH-HHccCCHHHHHHHHHHHHHC--CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCcchhhHH
Q 027083 143 SYSLLVDA-HLTNRDQKAALSVIDEMVNA--GFA-PSKETLKKVRRRCVREMDEESNDRVEALAKKF-DIRMNTENRK 215 (228)
Q Consensus 143 t~~~li~~-~~~~g~~~~a~~~~~~m~~~--g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~ 215 (228)
.|...-.- +...|++++|.+.|++.... .++ .....+--+.-.+.-.+++++|...+..+.+. ...+..+.|.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 77655433 34579999999999976532 221 12233444555677788999999999988874 4444444443
No 224
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.94 E-value=1.7 Score=23.57 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
..+-..|.+.|++++|+++|++..+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444445555555555555554443
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=8.2 Score=30.30 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH---HHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA---LIYAFGKLKKTFEASRVFEHLVSLGV--KPNAMS 143 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t 143 (228)
-...|+..+..+ +.|+..+|...|....+ ++.-+..+=|+ |-.++...|++++|..+|..+.+.-- .--+.+
T Consensus 141 ~~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 141 ATKLYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred hhHHHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence 345888888766 45669999999998887 34444444433 45788899999999999988877521 112345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.--|-.+..+.|+-++|..+|++..+.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555666778889999999999988764
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.67 E-value=5.6 Score=28.12 Aligned_cols=87 Identities=13% Similarity=0.131 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
....|+.-..++ +.|+.++|.+.|+.+..+.-..| ....--.++.+|.+.++++.|...+++..+.+...--+-|--.
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444555544443 56888888888888887532222 2334556777888888888888888888877544334556666
Q ss_pred HHHHHccCC
Q 027083 148 VDAHLTNRD 156 (228)
Q Consensus 148 i~~~~~~g~ 156 (228)
+.+++.-..
T Consensus 89 ~~gL~~~~~ 97 (142)
T PF13512_consen 89 MRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHH
Confidence 666665333
No 227
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.35 E-value=0.89 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEH 131 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~ 131 (228)
|+.|=..|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555566666666666666665
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.27 E-value=13 Score=31.71 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhC--CCC-----------
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA--FGKLKKTFEASRVFEHLVSL--GVK----------- 138 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--g~~----------- 138 (228)
+.+|++|.. .+++.......+..+.. | ...|-.++.+ +-+.+.+++|.+.+..-... +-.
T Consensus 50 grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 50 GRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 566777764 35666666666666542 3 3344455554 34667788888877765443 222
Q ss_pred -CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhhHHHHHHHH-HHcCCCcchh
Q 027083 139 -PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA----PSKETLKKVRRRCVREMDEESNDRVEALA-KKFDIRMNTE 212 (228)
Q Consensus 139 -p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~li~~~~~~~~~~~a~~~~~~m-~~~g~~~~~~ 212 (228)
+|-.-=++.++++...|++.++..++++|...=++ .+..+|+.++-.+++. .+-.+ .......-+.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD 196 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH
Confidence 22333367778888889988888888888755443 7888888877777653 33333 4455666677
Q ss_pred hHHHHHHHHHh
Q 027083 213 NRKNILFNLEY 223 (228)
Q Consensus 213 ~~~~li~~l~~ 223 (228)
.|.++++.+.-
T Consensus 197 yYemilfY~kk 207 (549)
T PF07079_consen 197 YYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 229
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=89.17 E-value=2.3 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=14.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 153 TNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 153 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
+.|.+.++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555555555544444444443
No 230
>PLN02789 farnesyltranstransferase
Probab=89.08 E-value=11 Score=30.67 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 35 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
+..+-..+.+.+ ....++....+.....|- +..+|+..=..+...| ++++++..++++... -.-+...|+..-
T Consensus 40 ~~~~ra~l~~~e--~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~ 113 (320)
T PLN02789 40 MDYFRAVYASDE--RSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHH
Confidence 444444444444 344555555555544443 5567766656666666 689999999999873 233444677665
Q ss_pred HHHHhcCCH--HHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 114 YAFGKLKKT--FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 114 ~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
-.+.+.|.. +++..+++.+.+... -|-..|+-.--.+.+.|+++++++.++++.+... -+...|+...-.+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhc
Confidence 555666653 677888888887764 3788899988888999999999999999988653 3455666555444443
No 231
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.96 E-value=7.2 Score=28.42 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 68 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
|+...|..+++.+.+.|+......+ .. .++-||.......+-.+... ...+.++=-+|.+. =...+..+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~ql----lq-~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR----L~~~~~~i 95 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQL----LQ-YHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR----LGTAYEEI 95 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH----Hh-hcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH----hhhhHHHH
Confidence 4677999999999998886654443 33 47777777776666444433 23334433333321 11356778
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
++.+...|++-+|.++.+..... +...-..++++-...++...--.++......+
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 88899999999998887664321 22223457777777788777777777777655
No 232
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=11 Score=30.08 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCcHhhHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL---KKTFEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
|...|-.|=..|...|+.+.|..-|.+-.+-.|- |...+..+-.++... .+-.++..+|+++.+... -|..+-.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 8899999999999999999999999998864343 333444444443222 245779999999987653 3666677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
-|-..+...|++.+|...++.|.+.. |....+..+|+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 77778889999999999999998753 33334444544
No 233
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.51 E-value=0.11 Score=36.62 Aligned_cols=130 Identities=8% Similarity=0.047 Sum_probs=68.9
Q ss_pred HHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 027083 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA 115 (228)
Q Consensus 36 ~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 115 (228)
..+|+.+.+.+.......+.... .. ..+..+....+.++..|++.++.+...++++ . .+.+-...+++.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~--~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~-----~~~yd~~~~~~~ 79 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEAL--VK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T-----SNNYDLDKALRL 79 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHH--HH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S-----SSSS-CTHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH--Hh-cccccCHHHHHHHHHHHHhcCCchHHHHHcc---c-----ccccCHHHHHHH
Confidence 34677777766433332222222 21 1122367888888888888877677766655 1 122444667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
|-+.|.++.|.-++.++....-- +..+...++++.|.+.+.+ .++...|..+++.|...+.
T Consensus 80 c~~~~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHTTTSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHhcchHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77777777777776654322111 1112333444444432221 2356777777777665544
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.37 E-value=1.6 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555555555555555555555554
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.32 E-value=15 Score=31.37 Aligned_cols=82 Identities=9% Similarity=0.078 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 68 KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 68 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
.+...|..|=......|+++.|.+.|.+... |..|+--|.-.|+.+...++-+.....|- +|..
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~a 408 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIA 408 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHH
Confidence 3788999999999999999999999998876 78899999999999999998888776652 6777
Q ss_pred HHHHHccCCHHHHHHHHH
Q 027083 148 VDAHLTNRDQKAALSVID 165 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~ 165 (228)
+.++.-.|++++..+++.
T Consensus 409 f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 777778899998888774
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.10 E-value=7.2 Score=27.35 Aligned_cols=51 Identities=22% Similarity=0.085 Sum_probs=25.9
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
.+..|++++|++.|.+... =.+-+...||.--.++--.|+.++|..=+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3455555555555555543 12234445555555555555555555444443
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=88.06 E-value=8.2 Score=28.01 Aligned_cols=87 Identities=10% Similarity=-0.052 Sum_probs=59.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 027083 116 FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195 (228)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 195 (228)
+-..|++++|+.+|+-+...++. |..-|..|-.++-..++.++|...+......+. -|...+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34568888888888887766543 555667777777777888888887766554332 2333334455677777888888
Q ss_pred HHHHHHHHH
Q 027083 196 DRVEALAKK 204 (228)
Q Consensus 196 ~~~~~~m~~ 204 (228)
+..+....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877777
No 238
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.92 E-value=5.7 Score=26.04 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
++.+-++.+.. ..+.|+.....+.+++|-+.+++.-|.++|+-.+
T Consensus 25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444 2455555555555555555555555555554443
No 239
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.91 E-value=5.1 Score=27.70 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 125 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
..+-++.+....+-|++.....-+.+|-+-+++..|.++|+-.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555554444
No 240
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.82 E-value=5.9 Score=30.31 Aligned_cols=77 Identities=13% Similarity=-0.027 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhhHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVKPNAMSYSLLVD 149 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~ 149 (228)
|.+.-++.+.+.+.+.++.....+-.+. -..|..+-..+++-||-.|++++|..-++-..+- ...+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677888888999998887766552 2345556778889999999999998766655432 33456777888877
Q ss_pred H
Q 027083 150 A 150 (228)
Q Consensus 150 ~ 150 (228)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 241
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.63 E-value=1.3 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=14.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556666666666666666665
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.21 E-value=13 Score=29.27 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=75.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC-HHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA-GFAPS-KETLKK 181 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-~~t~~~ 181 (228)
..-|+.-++.|- .|++..|+..|....+... .-....+--|-.++...|+.++|..+|..+.+. +-.|- ..+.-.
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 346888887664 5669999999999987631 122334556889999999999999999988854 32332 255666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 027083 182 VRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 182 li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
|-.+..+.|+-++|..+++.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 778889999999999999998764
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.97 E-value=19 Score=31.05 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVK-PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-APSKETLKKVRRRCVRE 189 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~ 189 (228)
+-.++-+.|+.++|.+.|++|.+..-. -+......||.++...+...++..++.+--+-.. +.-...|++.+-.+...
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 334455667888888888887654311 1334566777888888888887777776543222 22235666655444333
No 244
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.31 E-value=3.1 Score=23.28 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=31.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 183 RRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
+....+.|-++++..+++.|.+.|+..+...|..++.-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33445678888999999999999999999999988753
No 245
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=85.70 E-value=25 Score=31.26 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~l 147 (228)
|...|--+--.=++.++.+.......+.... ..-.-..|-.+.-++.-.|+...|..+.++..+.. -.|+...|.-.
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 4445444333334556666665555555431 22234466777777778888888888888877664 34666666554
Q ss_pred HHHH------HccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHH
Q 027083 148 VDAH------LTNRDQKAALSVIDEMVNAGFAPSKETLK-KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKN 216 (228)
Q Consensus 148 i~~~------~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 216 (228)
..-+ .+.|.+++|.+.+..-. .. ..|...|. +-...+.+.+++++|..++..+...+ ||...|..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e-~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~ 257 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNE-KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhh-hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH
Confidence 4333 34577777777664322 11 12333332 22345667788888888888777654 34444433
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=15 Score=28.66 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAG---FAPSKETLKKVRRRCVREMDEESNDRV 198 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~ 198 (228)
|-+.|-.+...++...|+..+++--+.+ -.-|..+...||.+| ..|+.+.+..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4555556666777888888777643321 123456777777766 44666665544
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.57 E-value=10 Score=26.62 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHH
Q 027083 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163 (228)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 163 (228)
|++......+..+- .+....+..++...+.|.-++..+++.++.+. -.|++...-.+-++|.+-|+..++.++
T Consensus 70 ~NlKrVi~C~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 70 GNLKRVIECYAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp S-THHHHHHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 44555555544332 25566788889999999999999999998763 368888999999999999999999999
Q ss_pred HHHHHHCCCC
Q 027083 164 IDEMVNAGFA 173 (228)
Q Consensus 164 ~~~m~~~g~~ 173 (228)
+.+.=+.|++
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 9988888863
No 248
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.56 E-value=2.6 Score=22.01 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3566777777777777777777777654
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=12 Score=33.83 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
+.+--+.-+...|+...|.++-.+.+- ||-..|--=+.+++..+++++.+++-+.++ .+.-|--.+.+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 455556777888999999888776654 899999999999999999998888776543 378899999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
.+.|+.++|...+-+... .. -...+|.+.|++.+|.++..
T Consensus 755 ~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 999999999988854321 11 46677778888777776543
No 250
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=85.12 E-value=11 Score=28.13 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=12.6
Q ss_pred hcCCHHHHHHHHHHHHh
Q 027083 118 KLKKTFEASRVFEHLVS 134 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~ 134 (228)
+.|+++.|++.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44778888888877763
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=20 Score=29.46 Aligned_cols=142 Identities=7% Similarity=0.016 Sum_probs=92.9
Q ss_pred HhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH----HHHHHhcCCHHHHHHHHHHH
Q 027083 57 LENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL----IYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~~~~~~a~~~~~~m 132 (228)
..++....|. |...++..=.+|.-.|+...-...++.+.-+ -.||...|.-+ --++..+|-+++|++.-++-
T Consensus 126 wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ra 201 (491)
T KOG2610|consen 126 WDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRA 201 (491)
T ss_pred HHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhh
Confidence 3344444443 7888888888999999999988888888753 44555444333 33456889999999998887
Q ss_pred HhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN---AGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 133 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.+-+ +.|.=.-.++-..+-..|+.+++.+...+-.+ .+.-.-..-|....-.+...+.++.|+.+++.-.
T Consensus 202 lqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 202 LQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred ccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 7655 34666666777777788889998886654332 1111112233333344455588888888876543
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.65 E-value=13 Score=27.08 Aligned_cols=126 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred hhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCCCC
Q 027083 27 EIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI-WDLDRAYQTFEAVGSSFGLTPD 105 (228)
Q Consensus 27 ~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~ 105 (228)
++.++...|..+++.+.+.|.......+... ....++...-..+++.-... .-...|.+.+.++..
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~------- 90 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT------- 90 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh-------
Confidence 6666667899999999999953322222222 22222333444443332211 113445555555553
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
.+..+++.+...|++-+|.++.+.... -+...-..++.+-...++...-..+++-..+.+
T Consensus 91 --~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 --AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 267888999999999999999977532 233444667888888888777777776666543
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.44 E-value=2.5 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556667777777777777777776653
No 254
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.26 E-value=3.2 Score=33.15 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=20.9
Q ss_pred CCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027083 102 LTPDIHS-YNALIYAFGKLKKTFEASRVFEHLVSLGVK 138 (228)
Q Consensus 102 ~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 138 (228)
+.||+.+ ||.-|+...+.||+++|+++++|.++.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3344443 356666666666666666666666666554
No 255
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=84.19 E-value=15 Score=27.46 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=89.8
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++.+|...|+.+...+...+.. ..+.-.+..++.+.| +...+...+.+.....|-.|. ..+...+.+.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a-------~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~ 87 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYA-------PQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPNSPK-ADYALYMLGL 87 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTH-------HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHH-------HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHH
Confidence 378888888888888775432221 123445777777777 344555455554444443332 2333334433
Q ss_pred HHcCCHHHHHHHHHHHhhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSF-GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
+......... ....+. ...--...|..+|+-|=.+.-..+|...+.++... .-..- -.+-.-|.+.|.+..
T Consensus 88 ~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 88 SYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHH
T ss_pred HHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHH
Confidence 3222211111 000000 00001224566666666677777776665555431 11111 224556888899999
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhhHH
Q 027083 160 ALSVIDEMVNA--GFAPSKETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 160 a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~ 196 (228)
|..-++.+.+. +........-.++.++-+.|..+.+.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 98888888764 22222355567778888888877443
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.18 E-value=23 Score=29.49 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CcHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVK---PNAMSYSLLVDAHLT---NRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
++-+|-...+++...++++.+...-.. -....---..-++.| .|+-++|.+++..+....-.++..||..+-+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333566777777777777777653100 011111122333445 67777777777775555556666666665544
Q ss_pred HH
Q 027083 186 CV 187 (228)
Q Consensus 186 ~~ 187 (228)
|.
T Consensus 227 yK 228 (374)
T PF13281_consen 227 YK 228 (374)
T ss_pred HH
Confidence 43
No 257
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=83.92 E-value=23 Score=29.23 Aligned_cols=126 Identities=6% Similarity=0.027 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHHHhccchh--hhh-hhhCcchhHHH--HHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSII--DME-EIFSPFTSLYP--LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCV 76 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~--~~~-~~~~~~~~~~~--ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (228)
|.+++|..-|+...+....... .+. ...+....|+. .+..++-.| +...+......+....+= +...|-.-
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--D~~~ai~~i~~llEi~~W--da~l~~~R 195 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG--DCQNAIEMITHLLEIQPW--DASLRQAR 195 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC--chhhHHHHHHHHHhcCcc--hhHHHHHH
Confidence 7788999999888776542221 111 22222333332 222233333 333333333334443432 66677667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
-.+|...|++..|..=++...+ .. .-|+.++--+-..+-..|+.+.+....++..
T Consensus 196 akc~i~~~e~k~AI~Dlk~ask-Ls-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASK-LS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777777665555443 11 1223333333334444555555555444444
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.88 E-value=14 Score=26.72 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 72 AINCVILGC---ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI-YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 72 ~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+.+.||... ...++.+++..+++-+.- +.|.......+= -.+.+.|++++|.++|+++... .|.......|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kAL 83 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 444444443 345677777777777753 345444333322 2356677777777777777654 2444444555
Q ss_pred HHHHHc
Q 027083 148 VDAHLT 153 (228)
Q Consensus 148 i~~~~~ 153 (228)
+..|..
T Consensus 84 lA~CL~ 89 (160)
T PF09613_consen 84 LALCLY 89 (160)
T ss_pred HHHHHH
Confidence 555544
No 259
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.64 E-value=6.9 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=19.8
Q ss_pred CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 138 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.|++.+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666655553
No 260
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=83.56 E-value=16 Score=27.33 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCcHhhHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VKPNAMSYS 145 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~ 145 (228)
.+.---.|-++..+.|+..+|...|++...- -+.-|....-.+-++....+++..|...++.+.+.. -.||. --
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 5555666778888999999999999999872 556677888888888889999999999999887653 23333 33
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDR 197 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 197 (228)
.+-..+...|...+|+.-|+...+. .|+...-..--..+.+.|...++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4556677888899899888877764 4444332222334445555555543
No 261
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.72 E-value=8.6 Score=28.55 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=31.1
Q ss_pred HccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVN-AGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
....+.+......+..++ ....|+..+|..++.++...|+.++|+++...+..
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444433332 23567777777777777777777777777666654
No 262
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.64 E-value=38 Score=30.83 Aligned_cols=194 Identities=15% Similarity=0.095 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC-CHHHHHHHHHHHH-HcC
Q 027083 7 AFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILGCA-NIW 84 (228)
Q Consensus 7 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~-~~~ 84 (228)
|...+++.+.....+..-....+.....|+.+-..|+.+|.. ..++.......... +.| +...+-..=..|. +.+
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~--s~Av~ll~~~~~~~-~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD--SKAVNLLRESLKKS-EQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc--hHHHHHHHhhcccc-cCCCcchHHHHHHHHHHhchh
Confidence 334444444443333333334555567788888888888853 33333333322222 112 3333322223333 345
Q ss_pred CHHHHHHHHHHHhhc-----CCCCCCHHhHHHHHHHHHhc----C-------CHHHHHHHHHHHHhC-CCCCcHhhHHHH
Q 027083 85 DLDRAYQTFEAVGSS-----FGLTPDIHSYNALIYAFGKL----K-------KTFEASRVFEHLVSL-GVKPNAMSYSLL 147 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~----~-------~~~~a~~~~~~m~~~-g~~p~~~t~~~l 147 (228)
.++++.+.-.+.... ..+.|-...+ +=-+|... . .-.++.+.+++..+. +..|+...|-++
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~--lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLF--LGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHH--HHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 555555544443331 0223322222 22222211 1 134466677776554 345655555554
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-HcCC
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK-KFDI 207 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-~~g~ 207 (228)
- |+..++++.|++..++..+.+-.-+...|..+.-.+.-.+++..|+.+.+... +.|.
T Consensus 487 q--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 487 Q--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred H--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 4 56778899999999998887767788899888888888899999998876655 3443
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.56 E-value=19 Score=27.18 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=45.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 118 KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN---AGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
+.|+ +.|.+.|-++...+.--++..--.|-.-|. ..+.+++..++....+ .+-.+|+..+.+|...+-+.++.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 556666666666654445444444444443 5566777776666553 2336677777777777777777666
Q ss_pred H
Q 027083 195 N 195 (228)
Q Consensus 195 a 195 (228)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 5
No 264
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=30 Score=29.33 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHhhC--hhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhH
Q 027083 32 FTSLYPLVVACSRKG--FETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSY 109 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 109 (228)
.++....+.++++.- ....+...+.+-+.....+ .|+.....+-+++...|+-+.|...|++... +.|+..+-
T Consensus 194 ~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr--~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~ 268 (564)
T KOG1174|consen 194 FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLR--CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEA 268 (564)
T ss_pred ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCC--ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhh
Confidence 344444566665543 2223333333333333233 2888888888999999999999999998865 34544432
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHH
Q 027083 110 NALI-YAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 110 ~~li-~~~~~~~~~~~a~~~~~~m~ 133 (228)
--+- --+.+.|+.++...+...+-
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHH
Confidence 1111 12345666666666666554
No 265
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=82.05 E-value=19 Score=26.96 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=59.9
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc-----
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT----- 153 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----- 153 (228)
+...|+.++|...|+.+..+....|- ....-.+..++.+.|++++|...++++.+.-..-...-+-..+.+.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 34567777777777777654211111 122334456677777777777777776554211111112222222211
Q ss_pred --------cCCHHHHHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 154 --------NRDQKAALSVIDEMVNA----GFAPSKETL------------KKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 154 --------~g~~~~a~~~~~~m~~~----g~~p~~~t~------------~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.+...+|...|+.+... ...++.... -.+.+-|.+.|....|..-++.+++.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11234455555555532 111111111 01345567788888888887777764
No 266
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=27 Score=30.30 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HhhHHHHHHHHHccCC
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN-AMSYSLLVDAHLTNRD 156 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 156 (228)
++.+..||++.|...|-+-.. . -++|-+.|+.-..+|.+.|++++|.+=-.+-.+ ..|+ +-.|+..=.+..--|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~-l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM-L-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc-c-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhccc
Confidence 455677888888888888765 1 234777888888888888888888765555443 3565 3457777777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 027083 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 186 (228)
+++|..-|.+=.+.. ..+...++-+.+++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 888888887644321 22455666666655
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.74 E-value=16 Score=25.86 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 118 KLKKTFEASRVFEHLVSLGV--KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
+.|++++|.+.|+.+...-. .-....---|+.+|-+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555555544310 11223334445555555555555555555444
No 268
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=81.12 E-value=3.9 Score=32.66 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCcHhh-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 137 VKPNAMS-YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 137 ~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
+.||+.+ ||.-|..-.+.|++++|+.+++|.++.|+.--..+|-..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4455555 4577777777777777777777777777766666655444
No 269
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.77 E-value=16 Score=29.27 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=25.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
+.|.++|.+.+|.++.+...... +.+...|-.++..+...|+--.+..-++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 44555555555555555554443 2344555555555555555444433333
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.29 E-value=7.2 Score=35.09 Aligned_cols=102 Identities=8% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 91 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
++++....+.|..-..-|.+--|.-+..-|.-.+|.++-.+.+ -||-..|..-+.+++..+++++-+++-++++.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 3444444445666677778888888999999999999998887 69999999999999999999998877665552
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 171 GFAPSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 171 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
+.-|.-.+.+|.+.|+.++|...+-+.
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 334555778899999999998887654
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.56 E-value=21 Score=25.84 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=64.8
Q ss_pred CHHhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 105 DIHSYNALIYA---FGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 105 ~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
+..+.+.||+. -.+.++.++++.+++.+.-.. -.|...++...+. .+.|++.+|.++|+++.... |..-.-.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 34455566654 457789999999999987542 1244556666664 68999999999999987654 3333333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcchhh
Q 027083 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTEN 213 (228)
Q Consensus 181 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 213 (228)
+|+..|-....-..=+..-..+...+-.|+...
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~d~~a~~ 114 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGADPDARA 114 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCChHHHH
Confidence 444444443333333444555666665555443
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.32 E-value=29 Score=27.45 Aligned_cols=172 Identities=10% Similarity=0.055 Sum_probs=101.1
Q ss_pred CccHHHHHHHHHHHHHHh-ccchhhhhhhhCcchhHHHHHHHHHhh-ChhcHHHHHHHHhch----hhcCCCCCC-----
Q 027083 1 MGDLQRAFITLNEFETAY-GDSIIDMEEIFSPFTSLYPLVVACSRK-GFETLDSVYFQLENL----SRAEPPYKS----- 69 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~~~~~~~~~~~----~~~~~~~~~----- 69 (228)
.|+++.|..++.+.+... ...+..... .....||.=...+.+. ........+..--+. .......|+
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 388999999999988875 222232211 1223566666666666 432222222221111 111121122
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 70 VAAINCVILGCANIWDL---DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
..+...+..+|...+.. +.|.++.+.+.++.+-+ ..+|-.-|+.+.+.++.+.+.+++.+|..+- .-....|..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 24556666777766654 45777777787653333 4455555677777899999999999998862 213455666
Q ss_pred HHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHH
Q 027083 147 LVDAHL--TNRDQKAALSVIDEMVNAGFAPSKE 177 (228)
Q Consensus 147 li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~ 177 (228)
+++.+- ....++.+...++.+....+.|...
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 666652 2344567788888888777777664
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=78.97 E-value=20 Score=25.24 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=69.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH---HHHHhcC
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN-AGFAPSKETLKKVR---RRCVREM 190 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li---~~~~~~~ 190 (228)
+....|+++.|.+.|.+....- .-....||.--.++--.|+.++|.+-+++..+ .|-+ +.....+.+ ..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4677899999999999876543 34778899999999999999999988887664 3433 333333332 2456679
Q ss_pred ChhhHHHHHHHHHHcCCCc
Q 027083 191 DEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 191 ~~~~a~~~~~~m~~~g~~~ 209 (228)
+.+.|+.-|+...+.|.+.
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 9999999998888888653
No 274
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=78.93 E-value=23 Score=31.86 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCCHHhHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCCCcHhhHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKLKKTFE------ASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~------a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+++.+|...|++..+.++++..... .|-+-=...||.-|+.+.+.|.++- |..++++. -+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888888889988888888877642 1233335567888888888887542 33344333 355678888888
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 027083 148 VDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~ 168 (228)
+.+-..--+-....-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877554322233333444444
No 275
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.57 E-value=41 Score=28.09 Aligned_cols=150 Identities=11% Similarity=0.060 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-C-CHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLT-P-DIHSYNALIYAFGK---LKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-p-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
+--.++-+|-...+++...++.+.+..-.... + ....--...-++.+ .|+.++|.+++..+......+++.||..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556899999999999999998731111 1 11111122334556 8999999999999766666788888887
Q ss_pred HHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhc-CChhhHHHHH----HHHHHcCCCc
Q 027083 147 LVDAHLTN---------RDQKAALSVIDEMVNAGFAPSKET---LKKVRRRCVRE-MDEESNDRVE----ALAKKFDIRM 209 (228)
Q Consensus 147 li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~-~~~~~a~~~~----~~m~~~g~~~ 209 (228)
+-..|-.. ...++|.+.+.+--+ +.||..+ +.+|+...... ..-.+.+++. ....+.|...
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 76666431 235666666654332 3354322 22222222211 1111223333 4445677777
Q ss_pred chhhHHHHHHHHHh
Q 027083 210 NTENRKNILFNLEY 223 (228)
Q Consensus 210 ~~~~~~~li~~l~~ 223 (228)
....|+.+-.-++.
T Consensus 301 ~~~dYWd~ATl~Ea 314 (374)
T PF13281_consen 301 KMQDYWDVATLLEA 314 (374)
T ss_pred ccccHHHHHHHHHH
Confidence 77888877666554
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.44 E-value=32 Score=26.90 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAP---SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+-.-|.+.|.+..|..-+++|.+. ..- .....-.+..+|-..|-.++|...-..+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344566777777777777777765 211 224444556677777777777766665544
No 277
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=77.33 E-value=28 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=12.4
Q ss_pred hcCChhhHHHHHHHHHH
Q 027083 188 REMDEESNDRVEALAKK 204 (228)
Q Consensus 188 ~~~~~~~a~~~~~~m~~ 204 (228)
+.|+++.|++.++.|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45777888877777765
No 278
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.22 E-value=21 Score=32.11 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhhHHHHHHHHHccCCHHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSL--GVKPNAMSYSLLVDAHLTNRDQKA------ALSVIDEMVNAGFAPSKETLKKV 182 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~t~~~l 182 (228)
+|+.+|..+|++-.+.++++.+... |-+.-...||..|....+.|.++. |.++++.-. +--|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998654 445567789999999999998753 333444333 55588999998
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 027083 183 RRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+++-...-+-....-+.....+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887665555555555555444
No 279
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=76.21 E-value=43 Score=27.71 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=91.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCC------------CCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLT------------PDIHSY--NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~------------p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
.+.+.|.++.|..=|+..... ... |-...+ ...+..+.-.|+...|+.....+.+-.+- |...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~-~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH-EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc-CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHH
Confidence 455889999999999998763 221 111112 34456677789999999999999877543 88889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-.--.+|...|++..|+.=++..-+.. .-+..++-.+-..+...|+.+.+....+.-.+.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 999999999999999986554433321 2245666667778889999999988888877754
No 280
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.10 E-value=5.9 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=13.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
|-.+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 334556666666666666665543
No 281
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=75.83 E-value=35 Score=26.48 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSY---NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
...|..... +...|+.+.|.+.|+++... .|+. ..- =.+..+|.+.+++++|...+++..+....-.-.-|-
T Consensus 33 ~~~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 33 SEIYATAQQ-KLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 344454444 45689999999999999874 2332 232 234577899999999999999998764332233444
Q ss_pred HHHHHHHc-----------------cCCH---HHHHHHHHHHHHC----CCCCCHHHHHH------------HHHHHHhc
Q 027083 146 LLVDAHLT-----------------NRDQ---KAALSVIDEMVNA----GFAPSKETLKK------------VRRRCVRE 189 (228)
Q Consensus 146 ~li~~~~~-----------------~g~~---~~a~~~~~~m~~~----g~~p~~~t~~~------------li~~~~~~ 189 (228)
..+.+.+. ..+. .+|...|+++++. ...|+....-. +.+-|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444331 1122 3555666666643 22223222111 12335667
Q ss_pred CChhhHHHHHHHHHHc--CCCcchhhHHHHHHHH
Q 027083 190 MDEESNDRVEALAKKF--DIRMNTENRKNILFNL 221 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~l 221 (228)
|....|..-++.+.+. +.....+....++.++
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay 222 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY 222 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 7777777666666652 2333344444444444
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=37 Score=31.28 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHH----HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 69 SVAAINCVILGCA----NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 69 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+..+--.++..|+ +.|+.++|..-|-+-.. -+.| .-+|+-|....++.+.-..++.+.+.|+. +...-
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 3344444555444 56888888877766653 2334 34567777777777888888888888864 77777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRV 198 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 198 (228)
+.|+.+|.+.++.++..+..+.-.+.-+..|..+ .+..|.+.+-.+.|..+
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~---al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVET---ALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHH---HHHHHHHhChHHHHHHH
Confidence 8899999998888887766654442223334433 44444444444444433
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.10 E-value=3.1 Score=20.37 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=8.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 027083 116 FGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~ 133 (228)
+.+.|+.++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 334444444444444443
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.89 E-value=8.6 Score=19.03 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=13.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
+|..+-.+|...|++++|+..|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 44555555555566666665555544
No 285
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=74.67 E-value=34 Score=25.74 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=82.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
+..+....=|++...+ +..+.....|+...--.|-.+..+.|+..+|...|++-..--+--|....-.+-++...-+
T Consensus 62 ~~~a~~q~ldP~R~~R---ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLR---EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHH---HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 3444444445444332 2222234567777777778888888888888888888765545567777777778888888
Q ss_pred CHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 156 DQKAALSVIDEMVNA---GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 156 ~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
++..|...++.+-+. +-.||... .+-+.+...|...+|+..++.....-
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~L--l~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHL--LFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchH--HHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 888888888776654 34555433 44566777777777777776666543
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=44 Score=26.85 Aligned_cols=141 Identities=11% Similarity=-0.018 Sum_probs=72.9
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
....|+..+|..+|+..... ..-+...--.+..+|...|+.+.|..++..+-..--......-..=|..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34567777777777777652 1223344556677788888888888888775433211122221122233333332222
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHH-HHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 160 ALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRV-EALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 160 a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
..++-.+.-. -| |...=-.+-..+...|+.+.|... +..+.+..-.-|...-+.++.-|+.++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222222 24 444444555666666777776644 444444222336666666766665543
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=73.97 E-value=59 Score=28.23 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=53.3
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhhHHHHHHHHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-KPNAMSYSLLVDAHL 152 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~ 152 (228)
++-+.|+.++|.+.|.+|.+.....-+....-.||.++...+.+.++..++.+-.+... +--..+|+..+--+-
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 33478999999999999987522223455788999999999999999999988654322 223456777664433
No 288
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.82 E-value=44 Score=26.69 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=23.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc-----cCCHHHHHHHH
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-----NRDQKAALSVI 164 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-----~g~~~~a~~~~ 164 (228)
-|.|.+++..+.++-..-.+..-.-+...|.++..-|.. .|.+++|+++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 455555555555555544443222233335555544443 25555555443
No 289
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=47 Score=28.11 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHhHHHH-------------HHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhhHHH
Q 027083 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNAL-------------IYAFGKLKKTFEASRVFEHLVSL---GVKPNAMSYSL 146 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~ 146 (228)
.++.+.+..-|++-.+ ..|+-..-... =+-..+.|.+..|...|.+-... +++|+.-.|..
T Consensus 216 ~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred ccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 3456666666665543 33443322211 12345789999999999987654 45667777877
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH--HHHhcCChhhHHHHHHHHHHcCCC
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RR--RCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~--~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
.-....+.|++++|+.-.++... .|..-..++ .+ ++-..++++.|.+-++...+..-.
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77888889999999887765553 344333333 33 344558888888888777765543
No 290
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.22 E-value=10 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+-.+|.+.|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456777777777777777766543
No 291
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.82 E-value=6.2 Score=18.59 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=5.5
Q ss_pred HHHhcCCHHHHHHH
Q 027083 115 AFGKLKKTFEASRV 128 (228)
Q Consensus 115 ~~~~~~~~~~a~~~ 128 (228)
.+...|++++|..+
T Consensus 10 ~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 10 ALLAQGDPDEAERL 23 (26)
T ss_pred HHHHcCCHHHHHHH
Confidence 33334444444333
No 292
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=72.52 E-value=91 Score=29.72 Aligned_cols=132 Identities=12% Similarity=0.001 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
...|+.|=..|+...|...|...|+...+ +.| |....-...+.|++..+++.|..+.-...+.. ..-...+|..-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQ 567 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhh
Confidence 44788888888888888899999988754 344 44567888899999999999999944332221 12233344433
Q ss_pred H--HHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 149 D--AHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 149 ~--~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
. .|...++...+..-|+.-.+ +.| |...|..+-++|.+.|....|..+|......+-
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 2 34567888888888876554 444 678999999999999999999999987766544
No 293
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.45 E-value=69 Score=28.33 Aligned_cols=183 Identities=15% Similarity=0.091 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
...|+.|+..+......+....+..... .. ...+..++++....|-.....-+.+.+..+ .+.+ ...-..
T Consensus 310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-------~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~~~-~ea~~~ 379 (574)
T smart00638 310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-------KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KITP-LEAAQL 379 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCH-HHHHHH
Confidence 4568889999888886666666655432 11 458899999999999988888888888874 5543 222233
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHHhCCCCCcH-------hhHHHHHHHHHccCCH------HHHHHHHHHHHHCCC-CCC
Q 027083 112 LIYA--FGKLKKTFEASRVFEHLVSLGVKPNA-------MSYSLLVDAHLTNRDQ------KAALSVIDEMVNAGF-APS 175 (228)
Q Consensus 112 li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~------~~a~~~~~~m~~~g~-~p~ 175 (228)
+... ..+.-..+-...+++-+......+.. .+|.+++.-+|..... ++....+.+...... .-|
T Consensus 380 ~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 380 LAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 3332 23344545555555544444555554 5566677655554431 333333333222111 123
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 176 KETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 176 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
..--...|.++.+.|.......+...+. ..-..+.......|.+|..++
T Consensus 460 ~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred chheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHH
Confidence 3334567888888888776655555544 333445667777777776553
No 294
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.22 E-value=25 Score=25.59 Aligned_cols=58 Identities=7% Similarity=-0.031 Sum_probs=40.3
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 100 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
.|++++..=. ++++.+...+..-.|.+|++.+.+.+..++..|-..-|..+.+.|-+.
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3666665543 445555555666678888888888877778888777777778777654
No 295
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.17 E-value=43 Score=25.84 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCCCHHhHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGS-SFGLTPDIHSYNAL 112 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~l 112 (228)
|.+..++.+.+.+ ...+++.......+.+|. |..+-..+++.+|-.|++++|..-.+-.-. .....+-..+|..+
T Consensus 3 Tl~~t~seLL~~~--sL~dai~~a~~qVkakPt--da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDN--SLQDAIGLARDQVKAKPT--DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhc--cHHHHHHHHHHHHhcCCc--cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 4566778888888 577777777766666766 777888999999999999999876654432 02455566677777
Q ss_pred HHH
Q 027083 113 IYA 115 (228)
Q Consensus 113 i~~ 115 (228)
|.+
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 754
No 296
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.14 E-value=14 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=10.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m 167 (228)
-.+|.++...|++++|.+.++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.00 E-value=86 Score=30.30 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh
Q 027083 68 KSVAAINCVILGCA----NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 68 ~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 143 (228)
|+...+..+..+|+ ....+++|.-.|+...+- ---+.+|-.+|++++|..+-.++... -|...
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 35556655555554 446666776666655442 44577788888888888887776421 12222
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 144 --YSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 144 --~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
=..|+.-+...|+.-+|-+++.+.-
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 2567777777777777777665544
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=70.99 E-value=67 Score=27.57 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSL-GVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ 146 (228)
|......+=.+....++.+.|...|++... +.||.. .|-..=-...-+|+.++|.+.+++-.+. -.+.-...--.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 544444444444555667777777777654 344433 2222222234456777777777764332 12222222223
Q ss_pred HHHHHHccCCHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~ 164 (228)
.|+.|+..+ .++|.+++
T Consensus 414 ~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 414 CVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHcCCc-hhhhHHHH
Confidence 333444443 45555554
No 299
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=70.95 E-value=17 Score=24.55 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
+.+.+.+.+++++.|+.| |...==++-.++..-..++.. +.-...|.+.+-.||. |+.++....+-
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~----~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDE----DIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCC----ccCCCCCeEEeeeeec---------CchHHHHHHHH
Confidence 456777777777678888 655555554444444433310 0112234555555554 77777666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC
Q 027083 166 EMVNAGFAPSKETLKKVRRRCVREM 190 (228)
Q Consensus 166 ~m~~~g~~p~~~t~~~li~~~~~~~ 190 (228)
.+.. |...|...+...+......|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 5555 66678888887777765544
No 300
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.73 E-value=16 Score=23.02 Aligned_cols=46 Identities=17% Similarity=0.015 Sum_probs=20.6
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASR 127 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~ 127 (228)
...+-+.|+.+|....++..-.|+.. ++..++.+|+..|.++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544311122221 44555555555555555443
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.59 E-value=44 Score=25.25 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=58.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhhHHHHHHHHHccC
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL---GVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g 155 (228)
.+.+.|| +.|++.|-++... +.--|+...-+|-.-|. ..+.+++..++.+..+. +-.+|+..+.+|.+.+-+.|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3344454 6788888888875 54445555555555555 67789999988876543 44689999999999999999
Q ss_pred CHHHHH
Q 027083 156 DQKAAL 161 (228)
Q Consensus 156 ~~~~a~ 161 (228)
+.+.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999886
No 302
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.30 E-value=5.5 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
-|.-.+|.++|+.|..+|-.|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3455667777888887777665 467766653
No 303
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.13 E-value=65 Score=27.04 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
+++.+.-++.+.+++..|.+.=++...- =++|..-.=--=.+|...|+++.|...|+.+.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4444555555555555555554444431 1122222222223455556666666666665554
No 304
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.13 E-value=17 Score=21.47 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
.++...++.+.++.. ..|-.-.-.+|.+|...|++++|.+..+++..
T Consensus 5 ~~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555432 34555667788899999999999888887754
No 305
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=68.96 E-value=31 Score=22.86 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Q 027083 75 CVILGCANIWDLDRAYQTFEAVG 97 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~ 97 (228)
.+|..|...+|.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34445555566666666665543
No 306
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=68.95 E-value=75 Score=27.33 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
.|+.-|...|++.+|-+..+++.. ..-.-..++-+++.+.-+.|+-+....++++.-.+| .+|-|-|-.+|.|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 344555555555555555555432 223344455555555555555444444444443332 2444444444443
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.59 E-value=7.7 Score=19.72 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=8.2
Q ss_pred HhhHHHHHHHHHccCCHHHH
Q 027083 141 AMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a 160 (228)
...|+.+=..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444433
No 308
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=68.56 E-value=59 Score=26.01 Aligned_cols=173 Identities=16% Similarity=0.074 Sum_probs=96.1
Q ss_pred HHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC-----CHHHH--------HHHHHHHhhcCCCCCC--
Q 027083 41 ACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW-----DLDRA--------YQTFEAVGSSFGLTPD-- 105 (228)
Q Consensus 41 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a--------~~~~~~m~~~~~~~p~-- 105 (228)
++++.|..+....+.....+.. .+++...|..++..+.... ..+.. .+++....++.|..++
T Consensus 47 al~~~g~~~~~~~l~l~~~~~~---~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 47 ALARAGRLSYSDFLDLLEYLLP---NETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHTTSS-HHHHHHHHGGG-G---T--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHcCCCCHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 4556676666666666555422 2226677777776665332 11111 1233333333455554
Q ss_pred ----HHhH-HHHHHHHH-hcCCHHHHHHHHHHHHhCCC----CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 106 ----IHSY-NALIYAFG-KLKKTFEASRVFEHLVSLGV----KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 106 ----~~~~-~~li~~~~-~~~~~~~a~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.... ..++...| ..+..+.|.+.|++....+. ..++..-..++....+.|..+.-..+++.... .++
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCC
Confidence 2223 33355445 12226778888988877522 45777778888888899886665555555443 346
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCcchhhHHHHHHHH
Q 027083 176 KETLKKVRRRCVREMDEESNDRVEALAKKFD-IRMNTENRKNILFNL 221 (228)
Q Consensus 176 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~l 221 (228)
...-..++.+++-..+.+...+++......+ +++.. ...++.++
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~ 245 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGL 245 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHH
Confidence 7778889999998889888889999888855 44332 33444444
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.13 E-value=51 Score=26.61 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCcchhhHH
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK-----KFDIRMNTENRK 215 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~~ 215 (228)
.+++..-..|..+|.+.+|.++.+...... ..+...+-.+++.+...|+-..+..-++.+. ..|+..+...+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 345566678889999999999888766532 3466777788899999999666655544443 367877766553
No 310
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.62 E-value=6.1 Score=27.59 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 186 (228)
-|.-.+|..+|..|.+.|-.||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556699999999999999985 66777654
No 311
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=66.23 E-value=14 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 138 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
.|....++-+++.+++..-.++++..+.+...+|. .+..+|-.-++.++|.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 46667778888888877777888888887777774 4566666666666664
No 312
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.94 E-value=93 Score=27.26 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C----------CCcHhhHHHHHHHHHccCC
Q 027083 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---V----------KPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 90 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~~~~g~ 156 (228)
......+.++.|+..+......+++.. .|++..|..++++....| + .++....-.++++.. .|+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCC
Confidence 333333333247777776666665553 588889988888765543 1 134444555666544 488
Q ss_pred HHHHHHHHHHHHHCCCCCCHH
Q 027083 157 QKAALSVIDEMVNAGFAPSKE 177 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~ 177 (228)
.+.+.+++++|...|..|...
T Consensus 261 ~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred HHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999887543
No 313
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=65.29 E-value=18 Score=24.15 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
+++.+...+..-.|.++++++.+.+..++..|-...|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555555556777777777666666666666666666666643
No 314
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.14 E-value=70 Score=25.59 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
+......++...++.|+.+.-..+++..... ++...-..++.+.+...+.+...++++.....
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 3444555555555555555545555544442 35555566666666666666666666665554
No 315
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=64.83 E-value=28 Score=23.19 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
+.|.+.+.+++++.|+.| |..+==++..++..-..+..+..- ...|++.|-.||. |+.+.....+-
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~----~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIK----LDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccC----CCCCeEEEeeeec---------CchHHHHHHHH
Confidence 457777888887778888 555544444444433333311111 1234444555554 66666655444
Q ss_pred HHH--HCCCCCCHHHHHHHHHHHHhcC
Q 027083 166 EMV--NAGFAPSKETLKKVRRRCVREM 190 (228)
Q Consensus 166 ~m~--~~g~~p~~~t~~~li~~~~~~~ 190 (228)
..+ ..+..+|...+...+.+....|
T Consensus 72 kq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 72 KQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 433 5567778887777776655443
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.66 E-value=39 Score=22.49 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
.++|..|-+..... +-. ...+--+-+.++...|++++|.++.+.+ +.||...|-+|-. .+.|..+.+..-+.
T Consensus 21 HqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45566666555542 111 2222223334566778888888777665 4678887776644 46677776666666
Q ss_pred HHHHCCCCCCHHHHH
Q 027083 166 EMVNAGFAPSKETLK 180 (228)
Q Consensus 166 ~m~~~g~~p~~~t~~ 180 (228)
+|..+| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 677666 44444443
No 317
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=99 Score=27.03 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
+.+.+.|++..|..-|.++.++ . +-|...|+..--+|.+.|.+..|.+=.+...+.. ++....|..=-.++-...++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777764 2 4456677777777777777777776655555442 11222222222222233455
Q ss_pred HHHHHHHHHHHH
Q 027083 158 KAALSVIDEMVN 169 (228)
Q Consensus 158 ~~a~~~~~~m~~ 169 (228)
++|.+.|++-.+
T Consensus 443 dkAleay~eale 454 (539)
T KOG0548|consen 443 DKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHh
Confidence 666666655444
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.30 E-value=16 Score=17.83 Aligned_cols=20 Identities=30% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~ 133 (228)
..|.+.|++++|.+.|++..
T Consensus 9 ~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34444444444444444433
No 319
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.71 E-value=32 Score=23.03 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
+++++.+++++-.+ |..|+.-|...|..++|.+++.++..
T Consensus 28 ~~~~~e~~L~~~~~----------~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHGK----------YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555543332 78888888888888888888888776
No 320
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.55 E-value=99 Score=26.79 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CC----------CcHhhHHHHHHHHHcc
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL-G--VK----------PNAMSYSLLVDAHLTN 154 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--~~----------p~~~t~~~li~~~~~~ 154 (228)
+....+....+..|+..+......++... .|++..|...++.+... + +. ........++++ .+.
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~~ 256 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IFN 256 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHc
Confidence 33344444332236666665555555532 46777777777665432 1 11 122334555554 566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCcchhhHHHH
Q 027083 155 RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE------SNDRVEALAKKFDIRMNTENRKNI 217 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~~~~~~~~~l 217 (228)
++++.|..++.+|...|..|....=..+..++-..|..+ .+..+++...+.|+.-.......+
T Consensus 257 ~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~ 325 (472)
T PRK14962 257 GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKL 325 (472)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 889999999999999888887654444444444444333 445556666667775544444433
No 321
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=63.32 E-value=53 Score=23.93 Aligned_cols=50 Identities=6% Similarity=-0.175 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKT 122 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 122 (228)
.--.++..+....+.-.|.+|++++.++ +..++..|----|+.+.+.|-+
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3445555555555555677777777764 6556665554555666666654
No 322
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.18 E-value=1e+02 Score=26.91 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC----------CcHhhHHHHHHHHHcc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VK----------PNAMSYSLLVDAHLTN 154 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~----------p~~~t~~~li~~~~~~ 154 (228)
++..+.+.+..++.|+..+......++... .|++..|...++.+...+ +. +.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 444444444433347777776666666544 378888888777765443 11 2233345566654 55
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 027083 155 RDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~ 175 (228)
++.+.|+.+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 889999999999999886654
No 323
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=63.05 E-value=17 Score=24.34 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=31.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 445555555556677777777777766677776667777776665443
No 324
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=63.02 E-value=1.2e+02 Score=27.71 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VK----------PNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~ 153 (228)
++....+.++.++.|+..+......+++.. .|++..|..+++++...| +. ++......|++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 444444544444347777777777777655 488888888888765532 11 234445566666544
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
++...++++++++...|+.+..
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHH
Confidence 8889999999999988876653
No 325
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=62.94 E-value=15 Score=22.11 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=35.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 102 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
+.|+...++.+++.+++-..++++...+++..+.|. .+..+|---+..++|
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346677778888888888778888888888777774 456666666665555
No 326
>PRK09462 fur ferric uptake regulator; Provisional
Probab=62.05 E-value=49 Score=23.36 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 101 GLTPDIHSYNALIYAFGKL-KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 101 ~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
|++++..= -.+++.+... +..-.|.++++.+.+.+...+..|-..-|+.+...|-+
T Consensus 12 glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 12 GLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 66554432 3344444443 35667777787777777666777766666777776654
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=60 Score=30.05 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM----VNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~li~~ 185 (228)
--++..+.+..+.+.+..+.+..... ++.-|-.+++.+++.+.++...++..+. .....-|-. .+++.
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~ 780 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQI 780 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHH
Confidence 56778888888999988888777643 8889999999999999776665554443 444333433 34445
Q ss_pred HHhcCC
Q 027083 186 CVREMD 191 (228)
Q Consensus 186 ~~~~~~ 191 (228)
+++.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 554443
No 328
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.97 E-value=51 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 89 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
..+.++.... ..+.|+.....+-+.+|-+.+++.-|.++|+-.+
T Consensus 68 vrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444 3555666666666666666666666666665544
No 329
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.61 E-value=53 Score=23.24 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=18.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 154 (228)
+++.+.+.+..-.|+.+++++.+.+...+..|--.-++.+...
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3444444444445555555555444444444433333333333
No 330
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.38 E-value=68 Score=26.08 Aligned_cols=58 Identities=9% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 90 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
.++++.+.++ ++.|.-+.|.=+--.+.+.=.+.+..++++.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 4566666664 7777777776666666777777777777777754 33447777777765
No 331
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=61.30 E-value=37 Score=21.07 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=5.2
Q ss_pred HHcCCHHHHHHHH
Q 027083 81 ANIWDLDRAYQTF 93 (228)
Q Consensus 81 ~~~~~~~~a~~~~ 93 (228)
++.|+++-...+.
T Consensus 5 ~~~~~~~~~~~ll 17 (89)
T PF12796_consen 5 AQNGNLEILKFLL 17 (89)
T ss_dssp HHTTTHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444433333
No 332
>PRK09857 putative transposase; Provisional
Probab=60.64 E-value=87 Score=25.16 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
+..++.-..+.|+.++..++++.+.+. ..+.....-++.+-+...|..+++..+...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545566666666666666544 333444555566666666766677778888888888755
No 333
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.21 E-value=1.2e+02 Score=26.48 Aligned_cols=90 Identities=7% Similarity=0.001 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CcHhhHHHHHHHHHcc
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VK----------PNAMSYSLLVDAHLTN 154 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~~ 154 (228)
.....++++....|+..+......+.. ...|++..|..++++....+ +. ++...+..++++....
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~ 261 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDP 261 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC
Confidence 334444444333466666666555543 33477888888887754321 11 2344455666665555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH
Q 027083 155 RDQKAALSVIDEMVNAGFAPSKETL 179 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~~~t~ 179 (228)
+....|+.++.+|.+.|..|.....
T Consensus 262 d~~~~al~~l~~l~~~G~d~~~~~~ 286 (484)
T PRK14956 262 DNHSKSLEILESLYQEGQDIYKFLW 286 (484)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5567899999999999987765543
No 334
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=59.64 E-value=1.5e+02 Score=27.87 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---------------HHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---------------YSLLVDAH 151 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---------------~~~li~~~ 151 (228)
+...+.+.++.++.|+..+......+++.. .|++..+..+++++... .....+| ...++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidAL 258 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDAL 258 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 333444444433236666666666555444 36777787777776532 1122222 33455554
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
. .++...++.+++++.+.|..|.
T Consensus 259 ~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 259 A-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHH
Confidence 4 5678888888888888777553
No 335
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=59.50 E-value=18 Score=24.45 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=16.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 154 (228)
++.+...+..-.|.++++.+.+.+...+..|.-.-|+.+.+.
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 333333333444444444444444444444433333333333
No 336
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.07 E-value=51 Score=22.01 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.-|..|+.-|...|..++|.+++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999998887
No 337
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.72 E-value=39 Score=25.41 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc-------------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSS-------------FGLTPDIHSYNALIYAFGKLKKTFEASRVFE 130 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~-------------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (228)
++|..|-+.-++.+++++++.|.+- .+..+--..-|.....|.++|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4566677777788888888777651 0122333445666666667777777766665
No 338
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.50 E-value=1.1e+02 Score=25.84 Aligned_cols=175 Identities=14% Similarity=0.043 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhhcC-----------
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA--NIWDLDRAYQTFEAVGSSF----------- 100 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~----------- 100 (228)
-|-.|-.++...|-.+...+-....+..+... .|....-.++.+=. -.|+.+.|.+-|+-|..+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLy 161 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLY 161 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHH
Confidence 46777777777664444433333222221111 13333333444333 4589999999999887630
Q ss_pred --------------------CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHhh--HHHHHHHHHcc--
Q 027083 101 --------------------GLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSL-GVKPNAMS--YSLLVDAHLTN-- 154 (228)
Q Consensus 101 --------------------~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t--~~~li~~~~~~-- 154 (228)
+..|... .+.+.+...|..|+++.|.++++.-... -+.+|..- --.|+.+-+..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 1111111 2356667777777777777777654332 23344322 22233322211
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHHcCCCcchh
Q 027083 155 -RDQKAALSVIDEMVNAGFAPSKETLKK-VRRRCVREMDEESNDRVEALAKKFDIRMNTE 212 (228)
Q Consensus 155 -g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 212 (228)
-++..|.+.-.+ ...+.||-.--.. .-.++.+.|++.++-.+++.+=+..-.|++-
T Consensus 242 dadp~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 242 DADPASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred cCChHHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 223333333222 2335555433222 2466788888888888888887776666543
No 339
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=1.1e+02 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcC--CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSF--GLTPDIHSY--NALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
...-+.+|.++|++..+++.++. --.|+.+.| ..+...+...|+..++.+++++..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33334445555555555554321 112333333 2233344444555555555554444
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.99 E-value=53 Score=21.87 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
.-++|..|-+.+...+-. ....--+-++++...|++++|..+.+.+ ..||...|-+|-.. +.|-.+....-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 357788887777765422 3333334456678899999999877655 58999999887654 6677676666666
Q ss_pred HHHHcCC
Q 027083 201 LAKKFDI 207 (228)
Q Consensus 201 ~m~~~g~ 207 (228)
.|..+|-
T Consensus 93 rla~sg~ 99 (115)
T TIGR02508 93 RLAASGD 99 (115)
T ss_pred HHHhCCC
Confidence 6666664
No 341
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.56 E-value=1.4e+02 Score=26.36 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
....|+.|++.+.... .++...+++++.. . + ...+..++++....|-.....-+.+.+....+.+ ...-..+..
T Consensus 309 ~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 4445666666555443 4556666666543 1 1 4666777777777776555554444444434332 222222222
Q ss_pred --HHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 185 --RCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 185 --~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
...+.-..+....+++.+....+.+....+...+.++.
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~ 422 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYG 422 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 22233344444444554444455555555554444443
No 342
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=56.55 E-value=51 Score=21.15 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
++|+-....|+..|...|-++++-..-.=.++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555666666666666655555455555555555554
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.41 E-value=72 Score=22.88 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 83 IWDLDRAYQTFEAVGSSFGLTPDIH---SYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
.++.+++..+++.|.- +.|+.. +|...| +...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4566666666666653 333333 333222 44556666666666666554
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.33 E-value=1.2e+02 Score=25.30 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=55.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
+-|.+.|.+++|.++|-.-. .+.| |.+++..--.+|.+...+..|+.=.+...... -..+.+|.|.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 34667888999999987664 3456 89999999999999999988887776655321 234566666655
Q ss_pred HHHHHHHHHHHH
Q 027083 157 QKAALSVIDEMV 168 (228)
Q Consensus 157 ~~~a~~~~~~m~ 168 (228)
...++.-..+.+
T Consensus 174 AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 174 ARESLGNNMEAK 185 (536)
T ss_pred HHHHHhhHHHHH
Confidence 555544444433
No 345
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=56.14 E-value=18 Score=24.40 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=33.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
..+++.....+.+-.|.++++.+...+...+..|.-..|+.+...|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4556666666667777888888888887778777777777777766544
No 346
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.96 E-value=84 Score=23.49 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCCCCC--HHhHHHH-----HHHHHhcCCHHHHHHHHHHHHh
Q 027083 86 LDRAYQTFEAVGSSFGLTPD--IHSYNAL-----IYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~--~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~ 134 (228)
++.|+.+++.+.+.. -.|. ......+ +-.|.++|.+++|.+++++.-.
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 567777887777642 2221 1122222 2346666666666666666554
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=55.72 E-value=48 Score=27.43 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
-|.+.|.+++|...|..-... .| |++++..--.+|.+...+..|+.-........ ..-...|+.-..+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 478899999999999875543 56 99999999999999999988877665544321 011122333233333345555
Q ss_pred hHHHHHHHHHHcCCCcchhhHH
Q 027083 194 SNDRVEALAKKFDIRMNTENRK 215 (228)
Q Consensus 194 ~a~~~~~~m~~~g~~~~~~~~~ 215 (228)
+|..-.+.+.+ +.|...-+.
T Consensus 183 EAKkD~E~vL~--LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHh--hCcccHHHH
Confidence 55555555443 344443333
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=55.62 E-value=1.3e+02 Score=29.29 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
.+.+|-.+|++++|+.+..++... -|... --.|+.-+...+..-+|-++..+-.++ ..-.+..+++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence 478888999999999998887652 23332 256777778888877777777665432 2233445555
Q ss_pred cCCHHHHHHHH
Q 027083 154 NRDQKAALSVI 164 (228)
Q Consensus 154 ~g~~~~a~~~~ 164 (228)
...+++|.++.
T Consensus 1039 a~~~~eAlrva 1049 (1265)
T KOG1920|consen 1039 AKEWEEALRVA 1049 (1265)
T ss_pred HhHHHHHHHHH
Confidence 56666666554
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.59 E-value=87 Score=26.18 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHH
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH--SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSL 146 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~ 146 (228)
..+.|..++..|+.+-+.-+. + .|..|+.. ...+.+...++.|+.+.+..+++. |...+ ..-. +
T Consensus 35 g~tpL~~A~~~~~~~~v~~Ll----~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~g~-t 104 (413)
T PHA02875 35 GISPIKLAMKFRDSEAIKLLM----K-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL----GKFADDVFYKDGM-T 104 (413)
T ss_pred CCCHHHHHHHcCCHHHHHHHH----h-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc----CCcccccccCCCC-C
Confidence 455667777888876554443 3 36656543 223445566678888776666643 32221 1222 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKET--LKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+ +.+.+.|..++
T Consensus 105 pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v----~~Ll~~g~~~~ 162 (413)
T PHA02875 105 PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI----ELLIDHKACLD 162 (413)
T ss_pred HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhcCCCCC
Confidence 344445667654 4555566676664321 12345555567776554 44455666544
No 350
>PRK09857 putative transposase; Provisional
Probab=55.47 E-value=1.1e+02 Score=24.63 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
..+..++.-..+.++.++-.++++.+.+. ..+......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33567777667788888888888887665 333444455666666777877888889999999988766
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.39 E-value=2.8e+02 Score=29.36 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=86.9
Q ss_pred HHHhhChhcHHHHHHHHhchhhcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 027083 41 ACSRKGFETLDSVYFQLENLSRAEPPY-KSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL 119 (228)
Q Consensus 41 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 119 (228)
+-.+.+ ..+.++..++......... ....-|-.+...|+..+++|+..-+......+ |+ ...-|......
T Consensus 1392 aSfrc~--~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1392 ASFRCK--AYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHhhH--HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc---HHHHHHHHHhh
Confidence 444444 5666666666532222211 13344555556999999999988877642221 22 23445566778
Q ss_pred CCHHHHHHHHHHHHhCCCCCc-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhhHHH
Q 027083 120 KKTFEASRVFEHLVSLGVKPN-AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV-RRRCVREMDEESNDR 197 (228)
Q Consensus 120 ~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~ 197 (228)
|++.+|...|+.+.+. .|+ ..+++.++.+....|.++...-..+-... ...+....++.+ +.+--+.++.+..+.
T Consensus 1463 g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~-~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII-NRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhh-ccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 9999999999999876 455 77889888888888887776654443332 122333333332 333345555554443
Q ss_pred H
Q 027083 198 V 198 (228)
Q Consensus 198 ~ 198 (228)
.
T Consensus 1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred h
Confidence 3
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.11 E-value=25 Score=17.16 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
|..+=..|.+.|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445555666666666665543
No 353
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=55.08 E-value=35 Score=24.11 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=23.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 186 CVREMDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
+.+.|-+.+.+++.+.|.+.|+..+...|...+.-
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 34445666667777777777777777777766654
No 354
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.88 E-value=1.6e+02 Score=26.53 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-------------KPNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~ 153 (228)
++....+.+...+.|+..+......+++. -.|++..|..++++....|- .++......++++...
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 33444444433324777777777766663 34788888888876544331 1334445566666444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
|+...++++++++...|..|..
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHH
Confidence 7888999999999988876653
No 355
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=54.48 E-value=1.3e+02 Score=25.44 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=94.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|+.+.|...|+.|..- +... ..-...|.-.--+.| +...+...-+.-.+.-+. -...+...|...
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtR-------llGLRgLyleAqr~G--areaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r 198 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETR-------LLGLRGLYLEAQRLG--AREAARHYAERAAEKAPQ--LPWAARATLEAR 198 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHH-------HHhHHHHHHHHHhcc--cHHHHHHHHHHHHhhccC--CchHHHHHHHHH
Confidence 37777888888877543 1110 001122222233334 233333333332222222 346777888888
Q ss_pred HHcCCHHHHHHHHHHHhhc--------------------------------------CCCCCCHHhH-HHHHHHHHhcCC
Q 027083 81 ANIWDLDRAYQTFEAVGSS--------------------------------------FGLTPDIHSY-NALIYAFGKLKK 121 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~--------------------------------------~~~~p~~~~~-~~li~~~~~~~~ 121 (228)
|..||++.|+++.+.-+.. ..+.||..-- -.--+++.+-|+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 8888888888888765442 1233333321 122367889999
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCChhhHHHHH
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN-AGFAPS-KETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
..++-++++.+-+.. |.+..+...+ +.+.|+.. .+-++..+. ..++|+ ..+--++.++-...|++..|..--
T Consensus 279 ~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 279 LRKGSKILETAWKAE--PHPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred hhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999998774 5554444333 45666532 222222221 123443 344444555555566665555443
Q ss_pred HH
Q 027083 200 AL 201 (228)
Q Consensus 200 ~~ 201 (228)
+.
T Consensus 353 ea 354 (531)
T COG3898 353 EA 354 (531)
T ss_pred HH
Confidence 33
No 356
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.05 E-value=84 Score=27.86 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+...-.-++..|.+.|-.+.+.++.+.+..+ - -...-|..-+.-+.++|+.+.+.++-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555666777777777777777777766553 1 123445556666666666655554444443
No 357
>COG0819 TenA Putative transcription activator [Transcription]
Probab=52.89 E-value=1e+02 Score=23.60 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=46.0
Q ss_pred HHhCCCCCcHhhHHHHHHHHHccCCHHHHHH-----------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALS-----------VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 132 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-----------~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
+.+....|....|+..|...+..|++.+... +-..+.+....+....|..-|+.|+...-.+.++++.+
T Consensus 100 ~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~ 179 (218)
T COG0819 100 LLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEA 179 (218)
T ss_pred HHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445666666666666666666544321 22222222333355666666776666544444555555
Q ss_pred HHHHcCCCcchhhHHHHHHHH
Q 027083 201 LAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 201 ~m~~~g~~~~~~~~~~li~~l 221 (228)
.+.+.+-..+......|...+
T Consensus 180 ~ld~~~~~~~~~~~~~l~~iF 200 (218)
T COG0819 180 LLDSLAENSSEEELEKLKQIF 200 (218)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 555554444445555554443
No 358
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=52.21 E-value=1.6e+02 Score=25.77 Aligned_cols=87 Identities=13% Similarity=0.267 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------C----------CCcHhhHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG------V----------KPNAMSYSLLVDA 150 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~----------~p~~~t~~~li~~ 150 (228)
++....++...++.|+..+......++.. -.|++..|..+++++...+ + .++....-.|+++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 34444444444334776666666666553 3478888888888764321 1 1344445556665
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
.. .|+.+.|..+++++...|..|..
T Consensus 268 i~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 268 II-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 44 48899999999999999887764
No 359
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.76 E-value=81 Score=25.66 Aligned_cols=57 Identities=7% Similarity=-0.028 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
.++++.|+..++.|.-.+|.-+.-.+++.-.+..+.++++.+.. |+.-|..++..++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 46777777888888888888888888888888888888888765 3444666665544
No 360
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=51.20 E-value=1.9e+02 Score=26.32 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----------
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK----------- 176 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------- 176 (228)
+.-.+-.-+.+...+.-|-++|..|... -.+++.....++|++|..+-+...+ +.||+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3333334445566677788888877532 2456666777888888877664433 33332
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 177 ETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 177 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.-|.-.-++|-+.|.-.+|.++++.+....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 234445567788888888888877766543
No 361
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.02 E-value=69 Score=21.10 Aligned_cols=63 Identities=6% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCC
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD--QKAALSVIDEMVNAGFAP 174 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 174 (228)
..+|..|...++.++|..-+.++... .--......+|..+...++ -+..-.++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555566666666666554322 1122233333333333322 233445555555555444
No 362
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.77 E-value=87 Score=22.14 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=35.7
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
+.+.+.+.|.+++.. =-.+++.+.+.+..-.|.++++++.+.+...+..|.-..++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344455556554332 3445555665655566677777776666555555555555555555543
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.27 E-value=1e+02 Score=22.89 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
+++|...|+...+ ..|+..+|+.-+.... +|-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 3444444554443 3688888888888764 36667777766654
No 364
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.72 E-value=1.1e+02 Score=22.93 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCCC--cH-----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 122 TFEASRVFEHLVSLGVKP--NA-----MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p--~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
++.|..+++...+.--.| -. ..=...+-.|.+.|.+++|.++++.... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 355666666665543222 11 1223455678999999999999998876 34444444444444444
No 365
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=48.45 E-value=45 Score=23.57 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=28.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
|-..++- +-+.|...+...++++|.++|+..+...|+-++.-
T Consensus 112 tlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3333333 35567777777888888888888887777776653
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.17 E-value=54 Score=24.72 Aligned_cols=24 Identities=4% Similarity=-0.074 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH
Q 027083 177 ETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 177 ~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
...|.....|.+.|.++.|.++++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHh
Confidence 445555555666666666665554
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.15 E-value=73 Score=28.26 Aligned_cols=78 Identities=8% Similarity=-0.052 Sum_probs=32.9
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHH
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNIL 218 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 218 (228)
.+...-.-++..|.+.|..+.+.++.+.+-.+-+ ...-|...+..+.+.|+...+..+...+.+..+..+......+|
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 4555667788888888888888888877665433 24567778888888888888888877777655544443333333
No 368
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=47.00 E-value=79 Score=20.61 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+-+...+++.....+. ....|++.|++++.+.|.-.-|+++-+.+..+|
T Consensus 46 ~~eq~~qmL~~W~~~~---G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 46 TREQLYQMLLTWVNKT---GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CHHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3555556666555542 235668888888888888888888877777665
No 369
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.74 E-value=1.5e+02 Score=23.58 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
|.++|--=+...-..|..-+|.+-..+... .+..|...|.-+-..|...|++++|.-.++++.-.+ +.++..|-.+-
T Consensus 119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rla 195 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLA 195 (289)
T ss_pred hhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 555565555555555555566666666555 366788888999999999999999999999998654 23555555665
Q ss_pred HHHHccCC---HHHHHHHHHHHHHCC
Q 027083 149 DAHLTNRD---QKAALSVIDEMVNAG 171 (228)
Q Consensus 149 ~~~~~~g~---~~~a~~~~~~m~~~g 171 (228)
+.+-..|. .+.+.+.+..-.+..
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55555543 456677777665543
No 370
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=46.06 E-value=1.9e+02 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
++|..+.+..+.||...+.-+...|.+.=-++.|.+|++-.-.
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~r 502 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCR 502 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeee
Confidence 4555666666777777777777777776666666666654443
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.86 E-value=1.4e+02 Score=23.15 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMV----NAGF-APSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
---|-..|.+.|++++|.++|+.+. +.|+ .+...+...+..+..+.|+.+....+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3355566788899999999998874 2344 356677777888888888888877664443
No 372
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.45 E-value=70 Score=19.51 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=29.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
.-.|+.+.+.+++++....|+.|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888777777777666554
No 373
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=45.41 E-value=1.7e+02 Score=24.04 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=48.1
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 027083 110 NALIY--AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 110 ~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 187 (228)
+.|++ ++.|..++-...++.+.+.+. |+..-++|+++. -.|+.+.-..+++++.+.|+.++....+.+.+.++
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~ai-~~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARR----DPEISLQLTDAI-LNGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhcc----ChHHHHHHHHHH-HcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 55665 355555666677777777654 335566666654 34555666777777888888888877777766654
No 374
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.21 E-value=35 Score=16.05 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHhh
Q 027083 85 DLDRAYQTFEAVGS 98 (228)
Q Consensus 85 ~~~~a~~~~~~m~~ 98 (228)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34445555555444
No 375
>COG5210 GTPase-activating protein [General function prediction only]
Probab=44.98 E-value=2.1e+02 Score=24.92 Aligned_cols=62 Identities=16% Similarity=-0.012 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
.-+++..|...|+.+...++..++..+.+....+.+.++++.+.-.|+..-...+..++..+
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~ 422 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 34677778888888888999999999999999999999998888888776666665555443
No 376
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.96 E-value=1.1e+02 Score=21.88 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 027083 64 EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120 (228)
Q Consensus 64 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 120 (228)
.|-.+...++-.+|. ...|++++|.++|++...+ + ....|..-+.++|-.-
T Consensus 40 rP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~-~---~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 40 RPNLKELDMFDGWLL--IARGNYDEAARILRELLSS-A---GAPPYGKALLALCLNA 90 (153)
T ss_pred CCCccccchhHHHHH--HHcCCHHHHHHHHHhhhcc-C---CCchHHHHHHHHHHHh
Confidence 333346667766554 5789999999999999885 2 2224555555555443
No 377
>PLN03025 replication factor C subunit; Provisional
Probab=44.76 E-value=1.7e+02 Score=23.69 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCcHhhHHHHHHHHHcc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL-G-----------VKPNAMSYSLLVDAHLTN 154 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-----------~~p~~~t~~~li~~~~~~ 154 (228)
++....+.++.++.|+..+......++... .|++..|...++..... + -.|....-..++++. ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 455555555544348888888888887654 48888888888754321 1 123334455566654 45
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 027083 155 RDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 186 (228)
++++.|...+.+|...|+.|...... +...+
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~-l~~~~ 268 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITT-LFRVV 268 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHH
Confidence 88999999999999999988754433 34443
No 378
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.61 E-value=2.6e+02 Score=25.79 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred HHHHHHHHH-HHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHh
Q 027083 123 FEASRVFEH-LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG---F----------APSKETLKKVRRRCVR 188 (228)
Q Consensus 123 ~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~~~ 188 (228)
++....+.. +.+.|+..+......++... .|++..+..+++.....| + .++......|++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 444444443 45568888888888887754 699999999998766532 1 1234445556666665
Q ss_pred cCChhhHHHHHHHHHHcCCCcc
Q 027083 189 EMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 189 ~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
++...+..+++.+.+.|+.+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 788999999999999999754
No 379
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.53 E-value=67 Score=19.02 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH-----ccCCHHHHHHH
Q 027083 117 GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL-----TNRDQKAALSV 163 (228)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-----~~g~~~~a~~~ 163 (228)
...|++=+|.++++++-..--.|....+-.||...+ +.|+++.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345566666666666543322234445555555443 23555544443
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=44.30 E-value=32 Score=15.35 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
|..+-..+...++++.|...|++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555566666666666665554
No 381
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.24 E-value=2.7e+02 Score=26.04 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C----------CCcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---V----------KPNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~~~ 153 (228)
++..+.++++....|+..+......+.+. ..|++.+|..++++....+ + .+|......+++.+ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 34444555544323555555555444333 2577788888776644322 1 23444566666654 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 027083 154 NRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.|+..+++++++++...|+.+.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCHH
Confidence 4888888888888888877554
No 382
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.78 E-value=2.5e+02 Score=25.40 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+..-|..|=.+....+++..|.+.|..... |..|+-.+...|+-+....+-+...+.|.. |.-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHH
Confidence 455677777777777888777777776554 466666677777766666666666666542 2233
Q ss_pred HHHHccCCHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVID 165 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~ 165 (228)
-+|...|+++++.+++.
T Consensus 729 ~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34556677777776653
No 383
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=43.70 E-value=27 Score=20.88 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=19.6
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIH 107 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~ 107 (228)
...|++.|...|.+++++..+.|+.+
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 35689999999999998645666543
No 384
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.35 E-value=1e+02 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+|+-+-+|...++|..+.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455666666667777766666665
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.31 E-value=89 Score=20.11 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
++++.+.+.|+. +....+.+-.+-...|+-+.|.++++.+. +| | ..|...++++...|.-+.
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhh
Confidence 344444444432 22333333332234455555555555555 22 2 234455555555544433
No 386
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.15 E-value=79 Score=26.13 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=37.2
Q ss_pred HHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 37 PLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 37 ~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
.+++.+.+.+. .....+...++......+. |-..--.++..|...|-...|...|..+.-+ .++-|+..|.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~--n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK-~IQ~DTL~h~ 256 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPH--NYQLKLLLVRLYSLLGAGSLALEHYESLDIK-NIQLDTLGHL 256 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhcChH-HHHHHHhHHH
Confidence 44444444442 2333333333333333332 4445555666677777777777777776654 5666655443
No 387
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=42.95 E-value=1.4e+02 Score=24.14 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=75.8
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHH---HHHHhcCCHHHHHHHHHHHHhC-CCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 89 AYQTFEAVGSSFGLTPDIHSYNALI---YAFGKLKKTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 89 a~~~~~~m~~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
+..+++-+... .-.|....-..+| .+|.-..++|...++++..+.. ..-....-|+.|+.-...-|++.+..-+|
T Consensus 4 G~~Ll~~~~~~-~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yif 82 (296)
T PF14649_consen 4 GHKLLELADSS-HKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIF 82 (296)
T ss_pred HHHHHHHHhcc-CCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHH
Confidence 45566666652 4446777778888 5666777788888887754332 22345566888888888889998888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCcchhhHHHHHH
Q 027083 165 DEMVNAGFAPSKETLKKVRRRCVREMDEESND-RVEALAKKFDIRMNTENRKNILF 219 (228)
Q Consensus 165 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~li~ 219 (228)
+-+++++ -|..|++-.... ...-+ .+.+.+.+. .+.|.+.|..+-.
T Consensus 83 d~L~~n~------qfE~LL~k~~d~--~~~lk~all~ylk~~-~P~d~e~~~mv~l 129 (296)
T PF14649_consen 83 DILIEND------QFELLLRKGIDK--VNGLKMALLDYLKRC-CPEDKEKFSMVAL 129 (296)
T ss_pred HHHHHcC------hHHHHHhccccc--cchHHHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 8888754 267777664422 12222 234444333 4556666665543
No 388
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.93 E-value=1.6e+02 Score=24.32 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 027083 110 NALIYAFGKLKKTF---EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 110 ~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 178 (228)
+.+++.|.+.++.. +|.-+++...+.. +-|...=-.++..|..-|-.+.|.+.|..+.-+.+.-|.-.
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~ 254 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLG 254 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhH
Confidence 45555555555543 3555566554432 33444555566777777888888877777655444444433
No 389
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=42.25 E-value=12 Score=21.62 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 027083 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118 (228)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 118 (228)
|-.++...+|++|.++ .+.|.+..||-.++=|..
T Consensus 6 gy~~~lI~vFK~~pSr-~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSR-NYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCccc-ccCccceeeeeeHHHHHH
Confidence 4446778899999996 899988888877765544
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.11 E-value=95 Score=19.84 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=13.0
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 027083 150 AHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~ 168 (228)
.....|++++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3445677888877777755
No 391
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=40.66 E-value=1.8e+02 Score=23.36 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP---NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
..+|..+.+.+.+.|.++.|...+.++...+..+ ++...-.-....-..|+..+|...+++.....+..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
No 392
>PLN03025 replication factor C subunit; Provisional
Probab=40.58 E-value=2e+02 Score=23.29 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=57.9
Q ss_pred HHHHHHHHH-HHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhc
Q 027083 123 FEASRVFEH-LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA-G-----------FAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 123 ~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~p~~~t~~~li~~~~~~ 189 (228)
++....+.+ ..+.|+..+......++.. ..|++..+...++..... + -.|.......+++.+. .
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-K 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-c
Confidence 444444444 4566888888888888875 458999998888754321 1 1233344445555554 4
Q ss_pred CChhhHHHHHHHHHHcCCCcch
Q 027083 190 MDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
++++.|...+..+...|+.|..
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTD 259 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 7899999999999999998763
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.43 E-value=2.6e+02 Score=24.72 Aligned_cols=125 Identities=12% Similarity=-0.017 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS---YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
....++.-|.+.+++++|..++..|.= +.. .... .+.+.+.+.+...-++.+..++.....=..|....-....
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW--~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~ 486 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW--NTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV 486 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc--ccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH
Confidence 345678899999999999999998862 222 3333 4556667777766666666776665543334444333444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
..|.. -=.+.|.+.|..|.+.+ .|...+..-.+.|+.+.-..++....+.|
T Consensus 487 ~ey~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 487 LEYRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 44443 11255666777666543 34444444445566666556655555544
No 394
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.81 E-value=1.9e+02 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
.|+--...|..+|.++-|-..++..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4555556666666666555555543
No 395
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=39.81 E-value=2.7e+02 Score=24.59 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH--------------
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH-------------- 151 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-------------- 151 (228)
.+.....++.+..+.|+.-+...+..+. ....|.+.+|..+++++...|- +.+|...+-...
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~ 255 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEA 255 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455555666554447777766665553 3455778888888888877642 223332222221
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
.-.|+...++..++++.+.|..|......
T Consensus 256 i~~~d~~~~~~~~~~l~~~G~~~~~~l~d 284 (515)
T COG2812 256 ILKGDAKEALRLINELIEEGKDPEAFLED 284 (515)
T ss_pred HHccCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34588899999999999999887664433
No 396
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.45 E-value=1.2e+02 Score=20.60 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
++|+-..++.-.++|+++++.|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666777888899999999999887
No 397
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.92 E-value=1.1e+02 Score=23.52 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCCC-------CcHhhHHHHHHHHHccC---------CHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 027083 122 TFEASRVFEHLVSLGVK-------PNAMSYSLLVDAHLTNR---------DQKAALSVIDEMVNAGFAP-SKETLKKVRR 184 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~-------p~~~t~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~t~~~li~ 184 (228)
.+.|..++.+|.-+.++ -...=|-.+-.+|++.| +.+.-.++++-..+.|++- =...|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56777788777554332 24555778888888876 3455677777777888653 3567788887
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 027083 185 RCVREMDEESNDRVEALAK 203 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~ 203 (228)
.-.-.-+.++..+++..+.
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7666677888888877664
No 398
>COG5210 GTPase-activating protein [General function prediction only]
Probab=38.73 E-value=1.2e+02 Score=26.49 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 027083 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 178 (228)
-++++.+.+.|+.+...++..++..+.+...++.+.++++.+--.|.......
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~ 414 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQL 414 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHH
Confidence 44666777777777777777777777777777777777777666554433333
No 399
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.16 E-value=70 Score=20.30 Aligned_cols=41 Identities=20% Similarity=0.000 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 129 (228)
.+.+.+++...+.+.| ...|...|+.++.++|.-+-|+++|
T Consensus 46 ~eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 3455556665555423 3456777777777777766666554
No 400
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.00 E-value=3e+02 Score=24.61 Aligned_cols=180 Identities=16% Similarity=0.038 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
.|..|+..+......+....+....... .....++.++++....|-...+.-+.+.+.++ .+.+... ..++
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~------~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~-~~~~~ea--~~~l 418 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS------KKEQARKIFLDALPQAGTNPAVKFIKDLIKSK-KLTDDEA--AQLL 418 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS---------HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT--S-HHHH--HHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCHHHH--HHHH
Confidence 4888888888888666665554443322 25679999999999999988888777777763 4433322 2333
Q ss_pred HHHHhcC-CH-HHHHHHHHHHHhC-CCCCc-------HhhHHHHHHHHHccC---------C---HHHHHHHHHH-HHHC
Q 027083 114 YAFGKLK-KT-FEASRVFEHLVSL-GVKPN-------AMSYSLLVDAHLTNR---------D---QKAALSVIDE-MVNA 170 (228)
Q Consensus 114 ~~~~~~~-~~-~~a~~~~~~m~~~-g~~p~-------~~t~~~li~~~~~~g---------~---~~~a~~~~~~-m~~~ 170 (228)
..+...- .+ .+..+.+.+|.+. ....+ ..++..|+.-+|... . .++..+.+.. +...
T Consensus 419 ~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 498 (618)
T PF01347_consen 419 ASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEA 498 (618)
T ss_dssp HHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHH
Confidence 3322222 22 2233333333322 12222 336777777777763 1 1122222221 2211
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 171 GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 171 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
--.-|...-...|.++.+.|....+..+...+... ...+.......|.+|..
T Consensus 499 ~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~-~~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGK-EEVPHFIRVAAIQALRR 550 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTS-S-S-HHHHHHHHHTTTT
T ss_pred hhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhc-cccchHHHHHHHHHHHH
Confidence 11234455556778888888765444444333333 24455555566666553
No 401
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.77 E-value=85 Score=27.65 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHH---HHHHHHhcCChhhHHHH
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-----APSKETLKK---VRRRCVREMDEESNDRV 198 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~t~~~---li~~~~~~~~~~~a~~~ 198 (228)
-+++++...|++||..||++ ..+++.+++...|.+.|- .|....=.- =+.+-+|...+++-.++
T Consensus 254 ~IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~i 325 (712)
T KOG1147|consen 254 VILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRI 325 (712)
T ss_pred HHHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHH
Confidence 36777788899999999864 334555555555555441 222211111 14456778889999999
Q ss_pred HHHHHH
Q 027083 199 EALAKK 204 (228)
Q Consensus 199 ~~~m~~ 204 (228)
+++|.+
T Consensus 326 w~EM~k 331 (712)
T KOG1147|consen 326 WEEMKK 331 (712)
T ss_pred HHHHhc
Confidence 999987
No 402
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.30 E-value=2.6e+02 Score=23.67 Aligned_cols=34 Identities=12% Similarity=-0.084 Sum_probs=25.0
Q ss_pred cCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 189 EMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 189 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
..+.+.+...+..|.+.|..|.......++.+.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4678888888888888888887666666665544
No 403
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=37.29 E-value=1.2e+02 Score=19.95 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGS 98 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~ 98 (228)
.+|..|...+|.++|.+.+.++..
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCC
Confidence 345555556666666666665543
No 404
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.70 E-value=2.4e+02 Score=23.22 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCcHhhHHHHHHHHHccCCHHHHHHHHH
Q 027083 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL--------------GVKPNAMSYSLLVDAHLTNRDQKAALSVID 165 (228)
Q Consensus 100 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 165 (228)
.|+..+......++... .|++..+...++.+... +..++...|. ++++. ..|+..++..+++
T Consensus 183 ~g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~~~~ 258 (367)
T PRK14970 183 EGIKFEDDALHIIAQKA--DGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLLAFN 258 (367)
T ss_pred cCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHHHHH
Confidence 36666666666665532 36677777776665421 1112222233 45543 4477888888888
Q ss_pred HHHHCCCCCCHHHHHHHH
Q 027083 166 EMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 166 ~m~~~g~~p~~~t~~~li 183 (228)
.+...|..| ......++
T Consensus 259 ~l~~~~~~~-~~il~~l~ 275 (367)
T PRK14970 259 EILRKGFDG-HHFIAGLA 275 (367)
T ss_pred HHHHcCCCH-HHHHHHHH
Confidence 888777666 33444443
No 405
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.10 E-value=3.6e+02 Score=25.01 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=16.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKE 177 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 177 (228)
++.++++.|...+.+|.+.|..|...
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I 294 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFI 294 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 34566777777777777777655433
No 406
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.09 E-value=1.2e+02 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+++-+.+|.-.++|..+.+.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555555666655555554
No 407
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.77 E-value=1.7e+02 Score=21.33 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=49.9
Q ss_pred HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH--HHHHHH-HHccCCHHHHHHHHHHHHH-
Q 027083 94 EAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY--SLLVDA-HLTNRDQKAALSVIDEMVN- 169 (228)
Q Consensus 94 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~-~~~~g~~~~a~~~~~~m~~- 169 (228)
+.+..+.|..++......+...+....-++.+..+++.+.+.|++.-..|- ...+.. +.+.| + ...|+.+..
T Consensus 66 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~g-l---~~~fd~i~~s 141 (198)
T TIGR01428 66 RYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAG-L---DDPFDAVLSA 141 (198)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCC-C---hhhhheeEeh
Confidence 333333466666655666777776677778889999999888765332221 111221 12223 1 122332221
Q ss_pred ---CCCCCCHHHHHHHHHHHH
Q 027083 170 ---AGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 170 ---~g~~p~~~t~~~li~~~~ 187 (228)
...+|+...|..+++.+.
T Consensus 142 ~~~~~~KP~~~~~~~~~~~~~ 162 (198)
T TIGR01428 142 DAVRAYKPAPQVYQLALEALG 162 (198)
T ss_pred hhcCCCCCCHHHHHHHHHHhC
Confidence 124888888888776653
No 408
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=35.04 E-value=1.5e+02 Score=24.34 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhhHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLL 147 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~l 147 (228)
--.-.+++.|.++|.+++|..+.....+-. .-|+......+
T Consensus 107 LElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 107 LELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 334678888889999999888877765432 23564444433
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.79 E-value=1.5e+02 Score=20.10 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
..++|..|.+..... +- -...+--+-+..+.+.|++++| +.. ......||...|-+|-. .+.|..+++...+
T Consensus 21 cH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 467788888887764 22 2233333444567777888888 211 22234677777766543 5777777777777
Q ss_pred HHHHHCC
Q 027083 165 DEMVNAG 171 (228)
Q Consensus 165 ~~m~~~g 171 (228)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7676655
No 410
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=34.65 E-value=1e+02 Score=18.40 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 190 (228)
++..+..++.+-....+.+.+...|...+..+...-+++.-+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34444555555555555555555555555555555555555444
No 411
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=34.51 E-value=2.5e+02 Score=22.79 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=48.8
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CcHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VK----------PNAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 100 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
.|+..+......++... .|++..|...++.+...+ +. ........++++.. .|+...|.++++.
T Consensus 192 ~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~-~~~~~~a~~~~~~ 268 (355)
T TIGR02397 192 EGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL-NKDTAEALKILDE 268 (355)
T ss_pred cCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 46666666555555433 367777777776654322 11 11223344566655 4789999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHH
Q 027083 167 MVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 167 m~~~g~~p~~~t~~~li~~~ 186 (228)
+.+.|..| ......+...+
T Consensus 269 l~~~~~~~-~~il~~l~~~~ 287 (355)
T TIGR02397 269 ILESGVDP-EKFLEDLIEIL 287 (355)
T ss_pred HHHcCCCH-HHHHHHHHHHH
Confidence 98888765 33444444443
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.25 E-value=3.6e+02 Score=24.47 Aligned_cols=100 Identities=12% Similarity=-0.082 Sum_probs=64.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
....+.|+++.|.++..+.. +..-|..|=++..+.+++..|.+.|.... -|..|+-.+...|+.
T Consensus 645 elal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNA 708 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCCh
Confidence 44557888888888766543 44568888889999999999988886643 356677777777776
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
+....+-..-++.|. -+. ..-++...|++++..+++
T Consensus 709 ~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 709 EGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELL 744 (794)
T ss_pred hHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHH
Confidence 655555555555552 222 223444556666655443
No 413
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.07 E-value=3.8e+02 Score=24.69 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-------------KPNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~ 153 (228)
++..+.+..+..+.|+..+......++.. ..|++..|..+++++...|- ..+......++++..+
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 44444444444334777777666666554 35888888888877654431 1234445566666444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 027083 154 NRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
++...+.++++++...|..++
T Consensus 258 -~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 258 -NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred -cCHHHHHHHHHHHHHhCCCHH
Confidence 678888888888888887665
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.91 E-value=70 Score=16.23 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhH
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
++.|..||+..... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 34455555554432 2444444
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.88 E-value=2.2e+02 Score=22.02 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVS----LG-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
--+-.-|.+.|++++|.++|+.+.. .| ..+...+-..+..++.+.|+.+....+.-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445679999999999999998742 23 34566777888888888999888877655543
No 416
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.83 E-value=2.4e+02 Score=22.26 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
-...|+..+..+ +.|++++|.+-|+.+.++....| ...+--.++.++-+.++.++|....++..+........-|-.-
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 455676666544 67999999999999998643333 3445666777889999999999999998776433333445555
Q ss_pred HHHHHc-------cCCHHHHHHHHHHHH---H----CCCCCCHHHHH------------HHHHHHHhcCChhhHHHHHHH
Q 027083 148 VDAHLT-------NRDQKAALSVIDEMV---N----AGFAPSKETLK------------KVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 148 i~~~~~-------~g~~~~a~~~~~~m~---~----~g~~p~~~t~~------------~li~~~~~~~~~~~a~~~~~~ 201 (228)
|.+.+. ..+...+.+-+..|. . ....||...=- .+-+-|.+.|....|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555543 244444444444444 2 34455543321 123456677888888888888
Q ss_pred HHHcCCCcchhhHHHHH
Q 027083 202 AKKFDIRMNTENRKNIL 218 (228)
Q Consensus 202 m~~~g~~~~~~~~~~li 218 (228)
|.+. ..-+..+...+.
T Consensus 193 v~e~-y~~t~~~~eaL~ 208 (254)
T COG4105 193 VLEN-YPDTSAVREALA 208 (254)
T ss_pred HHhc-cccccchHHHHH
Confidence 8876 544555554443
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.77 E-value=2.6e+02 Score=22.76 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=57.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCcHhhHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCH-
Q 027083 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVS----LGVKPNAMSYSLLVDA-HLTNRDQKAALSVIDEMVNAGFAPSK- 176 (228)
Q Consensus 103 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~- 176 (228)
.-....+-.+-.-|++.++.+.+.+..++..+ .|.+.|....-+-+.- |+...-+++-++..+.|.+.|--.+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33455667777888998888888877666433 4666666554443332 23333457777888888888765443
Q ss_pred ---HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 177 ---ETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 177 ---~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.+|.-+..... .++.+|-.++....
T Consensus 192 NRyK~Y~Gi~~m~~--RnFkeAa~Ll~d~l 219 (412)
T COG5187 192 NRYKVYKGIFKMMR--RNFKEAAILLSDIL 219 (412)
T ss_pred hhHHHHHHHHHHHH--HhhHHHHHHHHHHh
Confidence 33433333222 34555555554443
No 418
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.62 E-value=2.5e+02 Score=22.45 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
-...|+.+...|++..|.++..+..
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455566666677777777666654
No 419
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=33.53 E-value=53 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
.|+...|.++++.+...|+.|-...|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 477788888888888888887777664
No 420
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=33.34 E-value=30 Score=23.76 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVID-EMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~li 183 (228)
..-.++...+.++=.+.|-+|.-++|++..+.+..-|. ++++ ++.+.+-..|..-|+.++
T Consensus 10 ~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELGL-----rVY~~Q~E~k~s~Fnq~eFnk~l 70 (127)
T PF05261_consen 10 NKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELGL-----RVYEAQMERKESGFNQEEFNKVL 70 (127)
T ss_dssp HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCCC-----CHHHHCCHHCSSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhH-----HHHHHHHhhccCCCCHHHHHHHH
Confidence 33344455555555555555555666665555555552 1221 233344444555555443
No 421
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.12 E-value=58 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhc-cchhhhhhhhCcchhHHHHHHHHHhhCh
Q 027083 4 LQRAFITLNEFETAYG-DSIIDMEEIFSPFTSLYPLVVACSRKGF 47 (228)
Q Consensus 4 ~~~A~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 47 (228)
++.|..++++|-...- +++ | +......-|..+..+|.+.|.
T Consensus 137 vetAiaml~dmG~~SiKffP-M--~Gl~~leE~~avA~aca~~g~ 178 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFP-M--GGLKHLEEYAAVAKACAKHGF 178 (236)
T ss_pred HHHHHHHHHHcCCCeeeEee-c--CCcccHHHHHHHHHHHHHcCC
Confidence 4566666666632210 111 1 233334557888888888884
No 422
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=32.81 E-value=2.7e+02 Score=22.55 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=93.7
Q ss_pred CCHHHHHHHH---HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 68 KSVAAINCVI---LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 68 ~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+....-..+| .+|....++|+...+....+.....-+....|..+++-....|++.+..-+|+-+.+.+ -|
T Consensus 18 ~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n~------qf 91 (296)
T PF14649_consen 18 QLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIEND------QF 91 (296)
T ss_pred CccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHcC------hH
Confidence 4566677777 66777788888888887666533334456679999999999999999999999888653 26
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCC--hhhHHHHHHHHHHcCCC----cchhhH
Q 027083 145 SLLVDAHLTN-RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV---REMD--EESNDRVEALAKKFDIR----MNTENR 214 (228)
Q Consensus 145 ~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~---~~~~--~~~a~~~~~~m~~~g~~----~~~~~~ 214 (228)
..|+.-.... +.++.| +++..++ ..+.|...|+.+...|. ..+. ..+|....+.+...+.. -++...
T Consensus 92 E~LL~k~~d~~~~lk~a--ll~ylk~-~~P~d~e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~l~~~~~~~~l~~~~~~~ 168 (296)
T PF14649_consen 92 ELLLRKGIDKVNGLKMA--LLDYLKR-CCPEDKEKFSMVALHFNMYREIAELWEKRARQILKKLVSQPWEESLRDNPELK 168 (296)
T ss_pred HHHHhccccccchHHHH--HHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCHHHH
Confidence 6666654322 222332 2333333 34557777777655433 2232 34566777777765532 356666
Q ss_pred HHHHHHHHhh
Q 027083 215 KNILFNLEYS 224 (228)
Q Consensus 215 ~~li~~l~~~ 224 (228)
..+..+++..
T Consensus 169 ~~L~~am~~~ 178 (296)
T PF14649_consen 169 SELLEAMENF 178 (296)
T ss_pred HHHHHHHHHH
Confidence 6777666543
No 423
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.52 E-value=2.7e+02 Score=23.35 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH--------hcCCH--------HHHHHHHHHHH-------hCCCC
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG--------KLKKT--------FEASRVFEHLV-------SLGVK 138 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~--------~~~~~--------~~a~~~~~~m~-------~~g~~ 138 (228)
...+++.|+-+++...-. |....=...+++|- -.|.. ..|.+.++-|. ..=.+
T Consensus 195 glk~fe~Al~~~e~~v~~----Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~ 270 (422)
T KOG2582|consen 195 GLKRFERALYLLEICVTT----PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLK 270 (422)
T ss_pred ccccHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhc
Confidence 457899999999888753 55444444444443 33443 33445444332 00001
Q ss_pred CcHhhHHHHHHHH----HccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChhhHHHHHHHHHHcC
Q 027083 139 PNAMSYSLLVDAH----LTNRDQKAALSVIDEMVNAGFAPSKETLKKV----RRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 139 p~~~t~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----i~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-...+--++|... -+.++..-+...+..|.++.++.=..||.+| |...++.+..+++.+..-.|.+.|
T Consensus 271 ~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 271 DSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred CCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 1111134444332 3457777788888888888888788888887 444456677788888887887765
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.37 E-value=2.6e+02 Score=22.33 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
....+..........++.+. ....-...|..+...|++..|.+++.+..
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444444445555554443 33444455566666677777766666554
No 425
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.15 E-value=2.4e+02 Score=21.82 Aligned_cols=20 Identities=20% Similarity=-0.027 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m 132 (228)
|....+.|+++.|+....++
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33445555555555555444
No 426
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=31.69 E-value=1.3e+02 Score=18.80 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHHCC
Q 027083 156 DQKAALSVIDEMVNAG 171 (228)
Q Consensus 156 ~~~~a~~~~~~m~~~g 171 (228)
+++++...+.++...|
T Consensus 19 ~~~~~~~~~~~l~~~G 34 (89)
T PF08542_consen 19 DFKEARKKLYELLVEG 34 (89)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3344444444433333
No 427
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=30.80 E-value=3.9e+02 Score=23.82 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG---VK----------PNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~ 153 (228)
++....+....++.|+..+......++... .|++..|..++++....+ +. .+......++.+. .
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~s--~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al-~ 257 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARAA--EGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAI-V 257 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 334444444333347777777766666643 478899999888765432 11 1112334555543 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 027083 154 NRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.|+...+..+++++...|..|.
T Consensus 258 ~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 258 EGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred ccCHHHHHHHHHHHHHcCCCHH
Confidence 5789999999999998887664
No 428
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.74 E-value=4.4e+02 Score=24.48 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEH 131 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 131 (228)
+......+-.++...|.-++|.+.|-+.... .+.+..|...+.+.+|.++-+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p----------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLP----------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccCc----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555556666666666666655544321 2334455555555555555443
No 429
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.59 E-value=3.8e+02 Score=23.65 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
++++.+-++.=...|...+...+..|.. +..+.+.|...+-+|...|+..+..|...++-.+++ +.+.-.++.++
T Consensus 282 Id~~l~~l~~~~~~~~~~~~~l~~~L~~---~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~Lar--nP~~Q~~L~~E 356 (519)
T KOG0159|consen 282 IDNALEELEKQDSAGSEYTGSLLELLLR---KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELAR--NPEVQQRLREE 356 (519)
T ss_pred HHHHHHHHHhccccccchhHHHHHHHHH---ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 3444444433222233444444444443 346678888888899999987777777666666555 45555667777
Q ss_pred HHHcCCC
Q 027083 202 AKKFDIR 208 (228)
Q Consensus 202 m~~~g~~ 208 (228)
+.+.--.
T Consensus 357 i~~~~p~ 363 (519)
T KOG0159|consen 357 ILAVLPS 363 (519)
T ss_pred HHhhCCC
Confidence 7665444
No 430
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=30.27 E-value=1.5e+02 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=6.3
Q ss_pred HHHHHHHCCCCCCHHH
Q 027083 163 VIDEMVNAGFAPSKET 178 (228)
Q Consensus 163 ~~~~m~~~g~~p~~~t 178 (228)
.+.++...|..+|..+
T Consensus 46 ~i~~l~~~~~~id~~~ 61 (103)
T PF00772_consen 46 AILELYREGEPIDPIT 61 (103)
T ss_dssp HHHHHHHTTS--SHHH
T ss_pred HHHHHHHcCCCCCHHH
Confidence 3334444554455444
No 431
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=29.65 E-value=3.1e+02 Score=22.36 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhhHHHHHH-----------HHHccCCHHH
Q 027083 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--KPNAMSYSLLVD-----------AHLTNRDQKA 159 (228)
Q Consensus 93 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~li~-----------~~~~~g~~~~ 159 (228)
-.+..+ .|++.+....+.++..+. |+...+..-++.+.-... ..+......++. -....|+...
T Consensus 150 ~~~~~~-~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~ 226 (334)
T COG1466 150 KKRAKE-LGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKK 226 (334)
T ss_pred HHHHHH-cCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHH
Confidence 333444 588888888888887777 666666555555433211 222222222221 2245699999
Q ss_pred HHHHHHHHHHCCCCCC
Q 027083 160 ALSVIDEMVNAGFAPS 175 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~ 175 (228)
|..+++++...|..|=
T Consensus 227 a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 227 ALRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999999887663
No 432
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=29.10 E-value=1.9e+02 Score=19.71 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCCCcHhhHHHHHHHHH
Q 027083 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHL 152 (228)
Q Consensus 125 a~~~~~~m~~~g~~p~~~t~~~li~~~~ 152 (228)
...+.++=.+.|-+|.-++|+++.+.+.
T Consensus 9 I~~iVe~RrqEGA~~~Dvs~SSv~sMLL 36 (118)
T PRK13713 9 INAIVEERRQEGAREKDVSFSSVASMLL 36 (118)
T ss_pred HHHHHHHHHHcCCCccCccHHHHHHHHH
Confidence 3344444444454445455555444443
No 433
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=29.09 E-value=1.4e+02 Score=18.07 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
.+.+.+++.....+ .++..|...|+.++.+++..+.|.++
T Consensus 38 ~~~~~~mL~~W~~~---~~~~at~~~L~~aL~~~~~~~~a~~~ 77 (79)
T cd01670 38 REQAYQLLLKWEER---EGDNATVGNLIEALREIGRRDDAAKL 77 (79)
T ss_pred HHHHHHHHHHHHhc---cCcCcHHHHHHHHHHHcCHHHHHHHh
Confidence 34555566665543 23366667777777777665555443
No 434
>PRK12356 glutaminase; Reviewed
Probab=29.05 E-value=3.2e+02 Score=22.36 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 154 NRDQKAALSVIDEMVNAGFAP-S-KETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p-~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
.|+-..|+. ..|+..|.-+ | ..+...-.+.|+-....+..-.+...+...|+.|
T Consensus 167 t~~RNrAlA--~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 222 (319)
T PRK12356 167 TNFHNRAIA--WLLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNP 222 (319)
T ss_pred hhHHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 333344443 3366666543 3 2344444445555555555555556666666665
No 435
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=28.80 E-value=3e+02 Score=21.86 Aligned_cols=134 Identities=12% Similarity=0.157 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CcHhhHHHHHHHHHcc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK------------PNAMSYSLLVDAHLTN 154 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~------------p~~~t~~~li~~~~~~ 154 (228)
++.........++.|+..+......++... .|++..|...++.....+-. +.......++++.. .
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~--~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~-~ 240 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVS--EGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL-N 240 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-c
Confidence 444444444443347766777777776543 47888888887766544311 22234445566655 4
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH-HHHhcCChhhHHHHHH------HHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 155 RDQKAALSVIDEMV-NAGFAPSKETLKKVRR-RCVREMDEESNDRVEA------LAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 155 g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~-~~~~~~~~~~a~~~~~------~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
+++.+|..++.++. ..|..|... ...+.. .+.+.-+.+.-.+++. ...+.|.. .......+|-.++-++
T Consensus 241 ~~~~~a~~~l~~ll~~~g~~~~~i-~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~-~~~~le~~i~~~~~~~ 317 (319)
T PRK00440 241 GDFTEAREKLRDLMIDYGLSGEDI-IKQIHREVWSLDIPEELKVELIDAIGEADFRITEGAN-ERIQLEALLAKLALLG 317 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHhc
Confidence 78999999999987 478777642 222222 2222223333334443 33566743 2223455555554433
No 436
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=28.60 E-value=1.7e+02 Score=19.12 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
+...+++.....+ .....+++.||+++.+++.-.-|+.+-+..
T Consensus 50 Eq~~qmL~~W~~~---~G~~a~~~~Li~aLr~~~l~~~Ad~I~~~l 92 (97)
T cd08316 50 EQKVQLLRAWYQS---HGKTGAYRTLIKTLRKAKLCTKADKIQDII 92 (97)
T ss_pred HHHHHHHHHHHHH---hCCCchHHHHHHHHHHccchhHHHHHHHHH
Confidence 3444444444432 234445677777777777666666665544
No 437
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=28.20 E-value=2.5e+02 Score=20.71 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
.++.+++.+.|+ +..+-...+..+......+.|..++
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~ 124 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVL 124 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHH
Confidence 344444555552 3333344444344433344444333
No 438
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.93 E-value=4.5e+02 Score=23.65 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCcHhhHHHHHHHHHc
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--------------KPNAMSYSLLVDAHLT 153 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~t~~~li~~~~~ 153 (228)
+..+.+.+..++.|+..+......++. ...|++..|..+++++...+- .++......++++ ..
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~a-l~ 257 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDA-LA 257 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH-HH
Confidence 333333433332366666666655543 334788888888888754321 0122223345554 44
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 027083 154 NRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.++...++++++++...|..|.
T Consensus 258 ~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 258 ADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 5788999999999888887665
No 439
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.88 E-value=2.8e+02 Score=24.57 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY---SLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-------KET 178 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~t 178 (228)
..-++.-|.+.+++++|..++..|.=.- .....| +.+.+.+.+...-++.+..++.....=..|. ..-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~--~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~e 488 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT--MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLE 488 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc--cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 4578889999999999999999884321 123344 4455555565444555555555443222221 122
Q ss_pred HHHH--------HHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 179 LKKV--------RRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 179 ~~~l--------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
|..= ...+.|.+.+++|..+.-.+...+...|.
T Consensus 489 y~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdl 529 (545)
T PF11768_consen 489 YRDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDL 529 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHH
Confidence 2222 23334556666666655555444444333
No 440
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.87 E-value=2.9e+02 Score=21.38 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=32.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHh
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAF-GKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~ 134 (228)
+...+-..++.+++...++++... +...+..--|.|-.+| ...|....+++++....+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEM-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHT-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 344455666777777777777763 5666666666665555 233555556666655543
No 441
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.80 E-value=4.4e+02 Score=23.51 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.|..|+..+... +.++...+++++...- .....++.++++....|-.+-..-+.+.+..
T Consensus 348 ~f~~Lv~~lr~l-~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~ 406 (618)
T PF01347_consen 348 KFSRLVRLLRTL-SYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS 406 (618)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 456665555444 4566677777665321 3466777777777777765554444433333
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.75 E-value=1.7e+02 Score=18.58 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
..+.+.|.++++.+... +...|..+.+++-..|....
T Consensus 43 ~tr~~q~~~LLd~L~~R----G~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 43 GSRRDQARQLLIDLETR----GKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCchHH
Confidence 34455555565555543 33455555555555454433
No 443
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.74 E-value=2.1e+02 Score=19.78 Aligned_cols=94 Identities=10% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc-----------cCCHHHHHHHHHHHHHCCCCCCHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-----------NRDQKAALSVIDEMVNAGFAPSKE 177 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-----------~g~~~~a~~~~~~m~~~g~~p~~~ 177 (228)
+...++.+....---.+.++..++....-.|.. ..+..|+-|.+ .+.....-.+++.+.+.++.-...
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~ 99 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVED 99 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHH
Confidence 555666666666666666666666655433332 22333333322 233444555677777777765555
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 178 TLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 178 t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.+.-+=.-|..-.++.+|..+|+.+.
T Consensus 100 l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 100 LFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 55555444555577888888887654
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=27.70 E-value=2.7e+02 Score=23.20 Aligned_cols=123 Identities=8% Similarity=-0.064 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH--HHHHHHH
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY--SLLVDAH 151 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~ 151 (228)
.+.+...+..|+.+.+..+++.-... .-..+.. -.+.+...+..|+.+ +++.+.+.|..|+.... .+.+...
T Consensus 69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 69 ESELHDAVEEGDVKAVEELLDLGKFA-DDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred ccHHHHHHHCCCHHHHHHHHHcCCcc-cccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 45577777889998877766532210 1111111 123444455667754 44455566766654332 2344455
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
+..|+.+-+. .+.+.|..++. .-.+ .+...+..|+.+ +.+.+.+.|..|+.
T Consensus 143 ~~~~~~~~v~----~Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 143 VMMGDIKGIE----LLIDHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred HHcCCHHHHH----HHHhcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCc
Confidence 6778765544 44455654432 2333 344444556644 45566777776654
No 445
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.67 E-value=4.4e+02 Score=23.45 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CcHhh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-----PNAMS 143 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~t 143 (228)
+...|-.++.+|... ..+.-..+++++.+ +.-|.+.+.--+-.+...++-+.+..+|.....+=+. .=...
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve---~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~ev 173 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVE---YDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEV 173 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence 555666677777666 45556666666654 1223333333333333335555555555554332110 01123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMV-NAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
|.-|+.- -..+.+....+..... +.|...-...+.-+-..|....++.++.++...+.+..-
T Consensus 174 WeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 174 WEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 4444432 1344555555555554 345555666677777777888888888888876655443
No 446
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.56 E-value=1.7e+02 Score=18.77 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=45.1
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
|...+|..-+..-... ..+++ ++|+--...|+..|...|..+++.+.-.-..+...+++..|..
T Consensus 8 ~~~~~~k~~~~rk~~L-s~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVL-SAEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred ChHHHHHHHHHHHhcc-CHHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 3445555555432222 23443 6887777889999999999999988888788888888887764
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.48 E-value=3.8e+02 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=14.0
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHh
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHS 108 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 108 (228)
.+.+++..|.++|+++..+ ..+|....
T Consensus 141 ~n~~dy~aA~~~~~~L~~r-~l~~~~~~ 167 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRR-LLSAVNHT 167 (380)
T ss_pred HHhcChHHHHHHHHHHHhc-ccChhhhh
Confidence 3455555666666666553 44444433
No 448
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.31 E-value=4.2e+02 Score=23.12 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CcHhhHHHHHHHHHcc
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-------------PNAMSYSLLVDAHLTN 154 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~t~~~li~~~~~~ 154 (228)
+....+....++.|+..+......+... -.|++..|...++.+...+-. .+......++++ ...
T Consensus 182 el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~a-i~~ 258 (486)
T PRK14953 182 QIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNL-LLE 258 (486)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHH-HHC
Confidence 3333334333334766666666665543 337788888888776443211 122233445554 345
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 027083 155 RDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
|+.+.|..+++++...|..|..
T Consensus 259 ~d~~~al~~l~~L~~~g~~~~~ 280 (486)
T PRK14953 259 SDVDEAIKFLRTLEEKGYNLNK 280 (486)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 8899999999999888876654
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=5.5e+02 Score=24.44 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CC---HHhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCcHhhHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLT-PD---IHSYNALIYAFGKLKKT--FEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-p~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
-|..|+..|...|+.++|++++.+.... .. -| ..-+--+|+-+.+.+.. +-..+.-+...+..-.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~--~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE--DSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc--ccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 5778888899999999999999888763 21 11 11222355555555443 33333333333321111111111
Q ss_pred H------------HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 146 L------------LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 146 ~------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
. -+-.|......+.+...++.+....-.++..-.+.++..|+..
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1 2233566667777788888877666667777777777777643
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.71 E-value=65 Score=30.16 Aligned_cols=74 Identities=9% Similarity=-0.079 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
+|..+.+.|-.+-|+.+.+.=+. -+..+..+|+++.|.+.-..+ -|..+|..|...-.+.|
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 34444555555555544333222 233455667777776655443 25677777777777777
Q ss_pred CHHHHHHHHHHHH
Q 027083 156 DQKAALSVIDEMV 168 (228)
Q Consensus 156 ~~~~a~~~~~~m~ 168 (228)
+.+-|+..++..+
T Consensus 687 n~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTK 699 (1202)
T ss_pred chHHHHHHHHHhh
Confidence 7777777776555
No 451
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=3.6e+02 Score=21.97 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHH-------HHHHHHHccCCHHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYS-------LLVDAHLTNRDQKAALS 162 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-------~li~~~~~~g~~~~a~~ 162 (228)
+-..+.+++++|+..+.+...+|+..|..+-| -+..-|.+.|+....-+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 44567788888888888888888877655443 34444555555444333
No 452
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.06 E-value=3.3e+02 Score=21.47 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHHHHH
Q 027083 3 DLQRAFITLNEFETA 17 (228)
Q Consensus 3 ~~~~A~~~~~~m~~~ 17 (228)
++++|-.++.+.-..
T Consensus 29 k~eeAadl~~~Aan~ 43 (288)
T KOG1586|consen 29 KYEEAAELYERAANM 43 (288)
T ss_pred chHHHHHHHHHHHHH
Confidence 456666666554333
No 453
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.85 E-value=4.6e+02 Score=23.06 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhcCChhhHHH
Q 027083 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG---F----------APSKETLKKVRRRCVREMDEESNDR 197 (228)
Q Consensus 131 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~~~~~~~~~a~~ 197 (228)
.+.+.|+..+......++.. ..|++..|..++++....| + .++....-.+++++.. ++.+.+..
T Consensus 190 il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 34566877777777666654 3689999999998766443 1 2344444455666555 78899999
Q ss_pred HHHHHHHcCCCcc
Q 027083 198 VEALAKKFDIRMN 210 (228)
Q Consensus 198 ~~~~m~~~g~~~~ 210 (228)
+++.+.+.|..|.
T Consensus 267 ~~~~l~~~g~~~~ 279 (509)
T PRK14958 267 CVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999999875
No 454
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=25.60 E-value=1.4e+02 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
|..+.+.+....++++++.+.+.|+..+..|-+..|.
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3344444444455555555555555544444444333
No 455
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.25 E-value=2.5e+02 Score=19.73 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=43.8
Q ss_pred HHHHhCCCCCcHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 130 EHLVSLGVKPNAMSYSLLVDAHLTN-RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 130 ~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
+.+.+.|.+++.. =..++..+... +..-.|.++++.+.+.+...+..|.-..|+.+...|-+..
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3456667764443 34455555543 4567888888888888877788887778888888776654
No 456
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=25.20 E-value=1.8e+02 Score=20.56 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
+|....+.+.+..+.++++.+.+.|+..+..|....+.-
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 566677788888889999999999999888887775554
No 457
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=24.81 E-value=1.8e+02 Score=18.06 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 127 (228)
+.+..++.....+ |+ .|...|+.++.++|+.+-+..
T Consensus 40 ~p~~~lL~~W~~r----~~-ATv~~L~~aL~~i~R~Di~~~ 75 (77)
T cd08311 40 SPVRTLLADWSAQ----EG-ATLDALCTALRRIQREDIAES 75 (77)
T ss_pred hHHHHHHHHHHHC----cC-chHHHHHHHHHHcChHHHHHh
Confidence 4455555555543 33 666677777777776655543
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.72 E-value=2.4e+02 Score=23.46 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=35.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 77 (228)
.|++.+|...++++.+....... ...-..||.+|.... ..++.-..+.+..+...|+.-...|++.+
T Consensus 288 lGrlrEA~K~~RDL~ke~pl~t~--------lniheNLiEalLE~Q--AYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 288 LGRLREAVKIMRDLMKEFPLLTM--------LNIHENLLEALLELQ--AYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred hhhHHHHHHHHHHHhhhccHHHH--------HHHHHHHHHHHHHHH--HHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 47888888888887665321111 112235777777655 23333333333334455554566666544
No 459
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=24.70 E-value=2.4e+02 Score=19.68 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 027083 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173 (228)
Q Consensus 138 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 173 (228)
.+|.+..+.||= +...|+++.|+++.+...++|..
T Consensus 46 ~qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 46 AQDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CcCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCC
Confidence 345444433333 56778888888888888877753
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=4.1e+02 Score=22.05 Aligned_cols=146 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCCCCCHHhHHHHH
Q 027083 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS---FGLTPDIHSYNALI 113 (228)
Q Consensus 37 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li 113 (228)
.+++...+++..+..+.-...+......+-.--...+-..-..||+.||.+.|++.+...-++ .|.+.|...+.+-+
T Consensus 71 ~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRl 150 (393)
T KOG0687|consen 71 DLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRL 150 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Q ss_pred HHHHhcCC-----HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 114 YAFGKLKK-----TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 114 ~~~~~~~~-----~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
.-+.-..+ ++.|..++++=..=..+.-.-+|-.+-..-.| ++.+|-.+|-+....=-.-...+|..++.
T Consensus 151 glfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR--~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 151 GLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVR--NFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH--hHHHHHHHHHHHcccccceecccHHHHHH
No 461
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.57 E-value=1.8e+02 Score=18.04 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc
Q 027083 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN 154 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 154 (228)
+.+-|.+++..+.... +.++..||++-.-+.|+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455666666665443 45677777777665554
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.54 E-value=5.3e+02 Score=23.34 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--C----------CCcHhhHHHHHHHHHccCC
Q 027083 90 YQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL-G--V----------KPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 90 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--~----------~p~~~t~~~li~~~~~~g~ 156 (228)
...+.+..++.|+..+......++... .|++..|...++.+... | + .++...+-.++++. ..|+
T Consensus 186 ~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai-~~~~ 262 (614)
T PRK14971 186 VNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDAL-LAGK 262 (614)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHH-HcCC
Confidence 333333332247776766666665544 47788888877665321 1 1 12333444555554 4478
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 027083 157 QKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~ 176 (228)
..+|+.+++++...|..|..
T Consensus 263 ~~~al~ll~~Ll~~g~~~~~ 282 (614)
T PRK14971 263 VSDSLLLFDEILNKGFDGSH 282 (614)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 99999999999988877753
No 463
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=24.46 E-value=1.1e+02 Score=24.83 Aligned_cols=77 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCcHhhHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 126 SRVFEHLVSLGVKPNAMSYS-----LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
.+.++.+.+.| ||...+| .+.....+...++.-+++++..++.. |+..+-+.+|-++ ....++..+.+.
T Consensus 156 ~e~l~~l~~aG--~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~--pgi~~~TgiIVGl--GETeee~~etl~ 229 (302)
T TIGR00510 156 IAALDILLDAP--PDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYL--PNLPTKSGIMVGL--GETNEEIKQTLK 229 (302)
T ss_pred HHHHHHHHHcC--chhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhC--CCCeecceEEEEC--CCCHHHHHHHHH
Q ss_pred HHHHcCCC
Q 027083 201 LAKKFDIR 208 (228)
Q Consensus 201 ~m~~~g~~ 208 (228)
.+.+.|+.
T Consensus 230 ~Lrelg~d 237 (302)
T TIGR00510 230 DLRDHGVT 237 (302)
T ss_pred HHHhcCCC
No 464
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.40 E-value=1.5e+02 Score=16.90 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 027083 115 AFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~ 134 (228)
++.+.|+++.|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555444
No 465
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=3.2e+02 Score=20.74 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI--YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+..|-.++.... .+.+ +.....+.+... +-.-.-.++.+|- +.+..++++++|+.-++..... |.-..+..+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~-n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQA-NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 446666666654 2233 333344445442 1122222334333 5678888888888888765542 333344433
Q ss_pred H-----HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 148 V-----DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 148 i-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+ ......|.+++|+.+++.....++.+-. ...-=+.+...|+-++|+.-++.....+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~--~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAAIV--AELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHHHH--HHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3 3445678888888888776655543311 1122245777788888888888877775
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=4.2e+02 Score=22.07 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCCCcHhhHH--HHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCH-HHHHHH
Q 027083 114 YAFGKLKKTFEASRVFEHLVSL---GVKPNAMSYS--LLVDAHLTNRDQKAALSVIDEMVN-----AGFAPSK-ETLKKV 182 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~-~t~~~l 182 (228)
...-+.++.++|.++++++.+. --.||.+.|- .+..++...|+.+.+.+++++.++ -|+.|++ ..|..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3334445777777777776543 2246666653 344455567788888887777776 5677754 445555
Q ss_pred HHHHH-hcCChhh
Q 027083 183 RRRCV-REMDEES 194 (228)
Q Consensus 183 i~~~~-~~~~~~~ 194 (228)
=.-|. ..|++..
T Consensus 163 ssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 163 SSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHhHHH
Confidence 43333 3355443
No 467
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=23.97 E-value=1e+02 Score=18.10 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHCCCCC
Q 027083 157 QKAALSVIDEMVNAGFAP 174 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p 174 (228)
.+...++|+.|.++|+.|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 345667777777777755
No 468
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=23.86 E-value=1.9e+02 Score=18.04 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASR 127 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 127 (228)
+.+.+++.....+. ....|...|+.++.+.|+-+-|.+
T Consensus 45 eq~~~mL~~W~~r~---g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 45 QQAQAMLKLWLERE---GKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHhc---CCcchHHHHHHHHHHcChHHHHHH
Confidence 55666666655542 234666777777777777666554
No 469
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=23.50 E-value=5.2e+02 Score=22.86 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=53.5
Q ss_pred cHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-------------
Q 027083 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA------------- 115 (228)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~------------- 115 (228)
+.......+...........+.... -+-+....|.+.++..++++...- +- +..+...+-+.
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL--~~ia~~a~Gs~RDalslLDq~i~~-~~--~~It~~~v~~~lG~~~~~~~~~~~ 253 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDAL--SLIARAAEGSLRDALSLLDQAIAF-GE--GEITLESVRDMLGLTDIEKLLSLL 253 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHH--HHHHHHcCCChhhHHHHHHHHHHc-cC--CcccHHHHHHHhCCCCHHHHHHHH
Confidence 3444444444444444432243333 233444668899999999999873 32 33333222222
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCcHhh
Q 027083 116 -FGKLKKTFEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 116 -~~~~~~~~~a~~~~~~m~~~g~~p~~~t 143 (228)
....++...+...++++...|..|....
T Consensus 254 ~~i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 254 EAILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HHHHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 2345788999999999999998766544
No 470
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=23.34 E-value=3.9e+02 Score=21.40 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC-----------CcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VK-----------PNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~-----------p~~~t~~~li~~~~~ 153 (228)
++...++.++..+.|+..+......++... .|++..+...++.....+ +. +....-..++++. .
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~ 263 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-E 263 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-H
Confidence 344555555443347777777777777655 677877777776554221 11 1122333455543 5
Q ss_pred cCCHHHHHHHHHHHH-HCCCCCC
Q 027083 154 NRDQKAALSVIDEMV-NAGFAPS 175 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~-~~g~~p~ 175 (228)
.|++++|..++.++. +.|..|.
T Consensus 264 ~~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 264 AGDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred cCCHHHHHHHHHHHHHHcCCCHH
Confidence 578899999999886 6787765
No 471
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.30 E-value=4.3e+02 Score=21.85 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCcHhhHHHHHHHHHc
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-------------KPNAMSYSLLVDAHLT 153 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~ 153 (228)
++..+...+..++.|+..+......++.. ..|++..|..+++.....|- .++......++++. .
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai-~ 257 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDAL-L 257 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 34444444433223555555555444443 24778888888876643321 12233333444443 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
.++.+.+..+++++...|..|..
T Consensus 258 ~~~~~~~~~~~~~l~~~g~~~~~ 280 (363)
T PRK14961 258 KKDSKKTMLLLNKISSIGIEWEN 280 (363)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 57889999999998888876654
No 472
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=23.24 E-value=96 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.628 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhCCCCCcHh
Q 027083 124 EASRVFEHLVSLGVKPNAM 142 (228)
Q Consensus 124 ~a~~~~~~m~~~g~~p~~~ 142 (228)
.|-.+++++.++|++||..
T Consensus 243 Naaei~~~l~~r~~~pD~v 261 (561)
T COG2987 243 NAAEILPELLRRGIRPDLV 261 (561)
T ss_pred cHHHHHHHHHHcCCCCcee
Confidence 3444445555555554443
No 473
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=23.15 E-value=2.9e+02 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhC-CCCCcHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 121 KTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
++-..-.++..|... --.|+...-...|.+|.+-.+=..|.+.+..
T Consensus 211 RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 211 RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 334444444444322 1135666666666666665555555555543
No 474
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.09 E-value=3.8e+02 Score=21.19 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=61.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCcHhhHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL-G-----------VKPNAMSYSLL 147 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-----------~~p~~~t~~~l 147 (228)
|.+..+..--.++.+-.+.+ ++.-+..-..++| +-..|++.+|...++.-... | -.|.+.....+
T Consensus 169 ysklsd~qiL~Rl~~v~k~E-kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAE-KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHHh-CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 33444444444444444443 5544444444443 23456777776666554321 1 13777777888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
+..|. .+++++|.+++.++-+.|+.|.... +.+++.+-+.
T Consensus 246 l~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~~ 285 (333)
T KOG0991|consen 246 LQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVKNM 285 (333)
T ss_pred HHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhc
Confidence 88644 5678999999999889998886543 3355554433
No 475
>PRK12928 lipoyl synthase; Provisional
Probab=23.02 E-value=1.4e+02 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=37.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
..+.....+....++..++++..++.| |+..+-+.+|-++ ....++..+.+..+.+.++
T Consensus 175 ~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~ 233 (290)
T PRK12928 175 PRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVGC 233 (290)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcCC
Confidence 555665566667777777777777655 5555555566565 3445666666666666654
No 476
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.85 E-value=5.3e+02 Score=22.72 Aligned_cols=86 Identities=8% Similarity=0.106 Sum_probs=57.2
Q ss_pred HHHHHHHHH-HHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC------C----------CCCHHHHHHHHHH
Q 027083 123 FEASRVFEH-LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG------F----------APSKETLKKVRRR 185 (228)
Q Consensus 123 ~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~----------~p~~~t~~~li~~ 185 (228)
++....++. +.+.|+..+......+... ..|++..|...++.....+ + .++....-.++++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 333444433 4556777777777666663 4689999998888874321 1 2334444445666
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 186 CVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
..+ ++...|..++..+...|..|..
T Consensus 268 i~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 268 IIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 555 8899999999999999998653
No 477
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=22.73 E-value=5.7e+02 Score=23.07 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCcHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 027083 101 GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV-------------KPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 101 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 167 (228)
|+..+......++... .|++..+...+++....+- ..+....-.++++ ...|+.+.|..++..+
T Consensus 208 gi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~a-i~~gd~~~Al~~l~~l 284 (598)
T PRK09111 208 GVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEA-LMRGDVAAALAEFRAQ 284 (598)
T ss_pred CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 5655655555555433 3667777777766543320 1122222245553 3446788888888888
Q ss_pred HHCCCCCC
Q 027083 168 VNAGFAPS 175 (228)
Q Consensus 168 ~~~g~~p~ 175 (228)
...|..|-
T Consensus 285 ~~~G~~p~ 292 (598)
T PRK09111 285 YDAGADPV 292 (598)
T ss_pred HHcCCCHH
Confidence 77777665
No 478
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=22.56 E-value=4.4e+02 Score=21.69 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH------------HHHccCCHH
Q 027083 91 QTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD------------AHLTNRDQK 158 (228)
Q Consensus 91 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~------------~~~~~g~~~ 158 (228)
.-++.+..+.|+.-|...+..+++. .-|++..|+-.++++-..|-..+...-+.++. -.+..++..
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~ 272 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTP 272 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChH
Confidence 3344444334787887777777653 35788888888888766554444333333333 124567777
Q ss_pred HHHHHHHHHHHCCCCCC
Q 027083 159 AALSVIDEMVNAGFAPS 175 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~ 175 (228)
......+++.+.|..|-
T Consensus 273 ~~v~~~Rei~~sg~~~~ 289 (346)
T KOG0989|consen 273 NTVKRVREIMRSGYSPL 289 (346)
T ss_pred HHHHHHHHHHHhccCHH
Confidence 77777777777776654
No 479
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.52 E-value=1.6e+02 Score=16.57 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 027083 155 RDQKAALSVIDEMVNAGFAP 174 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p 174 (228)
|--.++.++.-++.+.|+.|
T Consensus 18 gLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 18 GLDRETLSICIELCENGVNP 37 (48)
T ss_pred CCCHHHHHHHHHHHHCCCCH
Confidence 44444444444445555444
No 480
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=4.3e+02 Score=21.55 Aligned_cols=138 Identities=14% Similarity=0.026 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHHhccchhhhhhhhC-cchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 3 DLQRAFITLNEFETAYGDSIIDMEEIFS-PFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 3 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
++++|...+..+...+-.... .... ...+...|.+.|...|+ .+..+......+..........+....++|..+
T Consensus 18 ~~~~ai~~yk~iL~kg~s~de---k~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf 94 (421)
T COG5159 18 DIEKAIGEYKRILGKGVSKDE---KTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKF 94 (421)
T ss_pred hHHHHHHHHHHHhcCCCChhh---hhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhc
Confidence 456666666666554211111 1111 13355667888888885 444444444433332222111455566666666
Q ss_pred HHc-CCHHHHHHHHHHHhh----cCCCCCCHHhHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCcHhh
Q 027083 81 ANI-WDLDRAYQTFEAVGS----SFGLTPDIHSYNALIYAFGKLKKTFEASRV----FEHLVSLGVKPNAMS 143 (228)
Q Consensus 81 ~~~-~~~~~a~~~~~~m~~----~~~~~p~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t 143 (228)
-.. ..++....+.....+ +...-.-...=.-+|..+.+.|.+.+|..+ +.++++..-+|+..+
T Consensus 95 ~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 95 PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 533 334444444443332 101111122236678888899998888765 445555555565544
No 481
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=22.36 E-value=2.3e+02 Score=18.34 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.7
Q ss_pred hHHHHHHHHHccC
Q 027083 143 SYSLLVDAHLTNR 155 (228)
Q Consensus 143 t~~~li~~~~~~g 155 (228)
.|..++.++-+.|
T Consensus 80 ~~~~~~~~l~r~g 92 (106)
T PF14518_consen 80 IYRRLIKGLRRLG 92 (106)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3444444444444
No 482
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=22.14 E-value=2.1e+02 Score=17.73 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
.+.+..++.....+ .+...|...|+.++.+.|..+-|..+
T Consensus 46 ~~~~~~lL~~W~~~---~g~~at~~~L~~aL~~~~~~d~a~~i 85 (88)
T smart00005 46 AEQSVQLLRLWEQR---EGKNATLGTLLEALRKMGRDDAVELL 85 (88)
T ss_pred HHHHHHHHHHHHHc---cchhhHHHHHHHHHHHcChHHHHHHH
Confidence 34555566655543 12335677777777777766665544
No 483
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.99 E-value=6e+02 Score=23.07 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=57.8
Q ss_pred HHHHHHH-HHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhc
Q 027083 124 EASRVFE-HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-------------APSKETLKKVRRRCVRE 189 (228)
Q Consensus 124 ~a~~~~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~~ 189 (228)
+..+.+. .+.+.|+..+......++. ...|++..+..++++....|- .++......+++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 3333343 3456788878777777776 456899999998876554331 2344555556666666
Q ss_pred CChhhHHHHHHHHHHcCCCcc
Q 027083 190 MDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~~g~~~~ 210 (228)
++...+..++..+.+.|..|.
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 788999999999999998754
No 484
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.97 E-value=4.7e+02 Score=21.81 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=42.0
Q ss_pred CHHHH-HHHHHHHH-HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 69 SVAAI-NCVILGCA-NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 69 ~~~~~-~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
|+.+| -.-+..|+ +.|+..+|.+.|..+.++..+..-......||.++...-.+.+...++-+-.
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44454 23355565 5799999999999988752221122234678888888877777766665543
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.75 E-value=3.7e+02 Score=20.46 Aligned_cols=53 Identities=13% Similarity=-0.049 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 158 KAALSVIDEMVNAGFA----PSKETLKKVRRR-CVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~----p~~~t~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
..|.+.|.+.....-. -+..+..-|+.- ..+.|+.++|.+.+..+...+-.+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4455555554433222 233444444443 4556888888888888777665544
No 486
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=21.68 E-value=4.3e+02 Score=21.27 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHhhcC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027083 70 VAAINCVILGCANIWD------LDRAYQTFEAVGSSF-----GLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~-----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 138 (228)
..+...||..+...+. .++|.++-.+.+.+. +..+++..|-.++-+|+-...++ ...+++-....
T Consensus 83 r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd-~del~~Lv~~v--- 158 (290)
T PF07899_consen 83 RRACILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFD-EDELLKLVVSV--- 158 (290)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccC-HHHHHHHHHHh---
Confidence 3455566666665432 245777766665543 34566777888888888777664 33343333221
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
..+-....-|..-|-.++.-.+.+.|+.+|-..+.
T Consensus 159 ---a~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieA 193 (290)
T PF07899_consen 159 ---ARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEA 193 (290)
T ss_pred ---cchHhhHHHHHHcCchhhhHHHHHHHHHCCCccch
Confidence 11222333444445555555555555555544433
No 487
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=21.65 E-value=16 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=9.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCC
Q 027083 101 GLTPDIHSYNALIYAFGKLKK 121 (228)
Q Consensus 101 ~~~p~~~~~~~li~~~~~~~~ 121 (228)
.+..+..+|.++|++|+|.|.
T Consensus 19 eLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 19 ELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp TTTTTTTB------TTSS--E
T ss_pred HhhcccceeeeeecccccceE
Confidence 455577788888888888875
No 488
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=21.56 E-value=1.7e+02 Score=17.78 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 027083 88 RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129 (228)
Q Consensus 88 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 129 (228)
.+.+++.....+ .+...|...|+.++.+.|+.+-|..+-
T Consensus 42 ~~~~~L~~W~~~---~~~~at~~~L~~aL~~~~~~d~~~~i~ 80 (83)
T PF00531_consen 42 QTYEMLQRWRQR---EGPNATVDQLIQALRDIGRNDLAEKIE 80 (83)
T ss_dssp HHHHHHHHHHHH---HGSTSSHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 344444444442 234556666777777776666655554
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.39 E-value=4.9e+02 Score=21.80 Aligned_cols=52 Identities=21% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIH--SYNALIYAF--GKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~--~~~~~~~~a~~~~~~m~~ 134 (228)
-+.+++..|.++|+++..+ ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3677888888888888773 555444 444555554 344566777777777654
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.16 E-value=7.5e+02 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHHC
Q 027083 142 MSYSLLVDAHLTNR--DQKAALSVIDEMVNA 170 (228)
Q Consensus 142 ~t~~~li~~~~~~g--~~~~a~~~~~~m~~~ 170 (228)
.-...+|.+|++.+ ++++|+.++.++++.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44556677777776 667777777666644
No 491
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.13 E-value=3.2e+02 Score=19.47 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=34.4
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
...|+.+...+++++.++ .-+- .-...--|--++.|.++++.+.++.+.+.+.
T Consensus 47 ~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345677788888888762 2222 2222333445788888999999988887764
No 492
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.04 E-value=4.8e+02 Score=21.51 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH----------HHHHH--HHHhcCChh
Q 027083 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL----------KKVRR--RCVREMDEE 193 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~----------~~li~--~~~~~~~~~ 193 (228)
.++-.-..+.|+..|...+..++. ...|+..+|+-.++..-..|-.-+...- ..|.. -.+..++.+
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~ 272 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTP 272 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChH
Confidence 334444466789999999998887 4679999999999887764433331111 12222 235678889
Q ss_pred hHHHHHHHHHHcCCCcch
Q 027083 194 SNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 194 ~a~~~~~~m~~~g~~~~~ 211 (228)
+.....+.+.+.|+.|-.
T Consensus 273 ~~v~~~Rei~~sg~~~~~ 290 (346)
T KOG0989|consen 273 NTVKRVREIMRSGYSPLQ 290 (346)
T ss_pred HHHHHHHHHHHhccCHHH
Confidence 999999999999988754
No 493
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.01 E-value=5.7e+02 Score=22.41 Aligned_cols=85 Identities=8% Similarity=0.004 Sum_probs=55.6
Q ss_pred HHHHHHHH-HhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhcC
Q 027083 125 ASRVFEHL-VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG---F----------APSKETLKKVRRRCVREM 190 (228)
Q Consensus 125 a~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~~~~~ 190 (228)
..+.+++. ...|+..+......+.. ...|++..|+.++++....+ + .++...+..++.+....+
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d 262 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD 262 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 33444443 44677777777666654 45699999999998765321 1 124444555666665555
Q ss_pred ChhhHHHHHHHHHHcCCCcch
Q 027083 191 DEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 191 ~~~~a~~~~~~m~~~g~~~~~ 211 (228)
....+..++..+.+.|..|..
T Consensus 263 ~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 263 NHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred cHHHHHHHHHHHHHcCCCHHH
Confidence 567899999999999987653
No 494
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.83 E-value=6e+02 Score=22.57 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHHHHhh-------cCCCCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGS-------SFGLTPDIHSYNALIYAFGKLK-----KTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~-------~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
++...|.+.|...|+...+ + + +....+-+=.+|.+-. +.+.|..++....+.|. |+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHH
Confidence 4456788888888888765 3 3 2334445555555532 56778888888777774 677666666
Q ss_pred HHHHHc-cCCHHHHHHHHHHHHHCC
Q 027083 148 VDAHLT-NRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 148 i~~~~~-~g~~~~a~~~~~~m~~~g 171 (228)
+.-... ..+...|.++|....+.|
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcC
Confidence 555555 355677888777776665
No 495
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=20.80 E-value=6.7e+02 Score=23.12 Aligned_cols=82 Identities=10% Similarity=-0.044 Sum_probs=51.7
Q ss_pred CCCCCcHhhHHHHHHHHHcc---CC-HHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 135 LGVKPNAMSYSLLVDAHLTN---RD-QKAALSVIDEMVN----AGFAPS---KETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 135 ~g~~p~~~t~~~li~~~~~~---g~-~~~a~~~~~~m~~----~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.|...|...|..|+.++-.. |. ++++.++++-++. .||.+. ...-+.+++-|+..|+.+........+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46778999999999987653 22 4777777776664 477653 3344557788888897665554444444
Q ss_pred H---cCC-CcchhhHHH
Q 027083 204 K---FDI-RMNTENRKN 216 (228)
Q Consensus 204 ~---~g~-~~~~~~~~~ 216 (228)
+ ..- .+....|..
T Consensus 291 ev~~d~~~~~~~~~y~~ 307 (677)
T PF05664_consen 291 EVAKDAKRATKDPLYLK 307 (677)
T ss_pred HHHHhccccccchhhhh
Confidence 3 222 344555554
No 496
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=20.79 E-value=2.8e+02 Score=18.77 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
+-+..+.+.|+.++|+. . -. ....||...|-+| +-.|.|.-++++.-+.++..+|
T Consensus 45 Ir~~sLmNrG~Yq~ALl--~-~~--~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 45 IRLSSLMNRGDYQEALL--L-PQ--CHCYPDLEPWAAL--CAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHTT-HHHHHH--H-HT--TS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHhhHHHHHHHH--h-cc--cCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 33444445555555511 1 11 1234555544433 3345555555555555554444
No 497
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=20.56 E-value=2.7e+02 Score=23.08 Aligned_cols=48 Identities=6% Similarity=-0.001 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
++.|+++.+.+++.|+.||..||--..+.+... +-.|....+++...|
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LItq--IGNA~gyVRmirsgg 329 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQ--IGNAMGYVRMIRSGG 329 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHH--HhHHHHHHHHHHHHh
Confidence 467777777788888888877776666554332 223555555544433
No 498
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.51 E-value=2.5e+02 Score=18.12 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=26.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVF 129 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 129 (228)
-|-+.|-.+.+.+.+...+...|-. .|...|+.++-.++.-.-|+.++
T Consensus 41 ~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 41 EYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 3444455566666666655432322 56666666666666655555544
No 499
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=20.50 E-value=5.5e+02 Score=22.01 Aligned_cols=44 Identities=11% Similarity=-0.135 Sum_probs=31.0
Q ss_pred HHHHHHHH---hcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 180 KKVRRRCV---REMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 180 ~~li~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
--+|+++- |..+.+.|.-.+.+|.+.|-.|-..-...++.+.|=
T Consensus 250 YdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsED 296 (436)
T COG2256 250 YDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASED 296 (436)
T ss_pred HHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 33566654 457788888888888888887777777766666553
No 500
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=20.46 E-value=82 Score=24.34 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCCCcHhh
Q 027083 123 FEASRVFEHLVSLGVKPNAMS 143 (228)
Q Consensus 123 ~~a~~~~~~m~~~g~~p~~~t 143 (228)
..|.++|+.+.+.|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 458899999999999998654
Done!