Query 027083
Match_columns 228
No_of_seqs 168 out of 2124
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 07:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7E-37 2.4E-41 258.6 23.7 188 32-223 26-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.3E-34 2.2E-38 240.5 22.8 178 1-189 39-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 7.9E-26 2.7E-30 198.8 10.1 137 69-210 126-265 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 7.6E-24 2.6E-28 186.4 12.4 121 102-222 123-247 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 1.5E-17 5.3E-22 142.5 25.3 188 32-227 373-566 (597)
6 2xpi_A Anaphase-promoting comp 99.8 4.4E-17 1.5E-21 139.7 25.9 209 1-227 318-532 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.5 2.6E-11 8.9E-16 98.5 24.9 133 69-205 236-368 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.5 6.2E-11 2.1E-15 96.3 25.6 207 1-227 148-355 (388)
9 2y4t_A DNAJ homolog subfamily 99.4 9E-11 3.1E-15 96.9 23.0 120 80-204 153-285 (450)
10 2vq2_A PILW, putative fimbrial 99.4 3.6E-10 1.2E-14 84.1 24.3 198 1-216 21-220 (225)
11 2y4t_A DNAJ homolog subfamily 99.4 1.2E-10 4.1E-15 96.2 23.4 187 1-206 39-241 (450)
12 2ho1_A Type 4 fimbrial biogene 99.4 5.5E-10 1.9E-14 85.1 24.1 188 2-206 51-239 (252)
13 4eqf_A PEX5-related protein; a 99.4 1.3E-10 4.4E-15 93.6 20.6 207 2-227 79-297 (365)
14 1fch_A Peroxisomal targeting s 99.4 1.3E-09 4.6E-14 87.4 25.2 211 1-227 77-346 (368)
15 3hym_B Cell division cycle pro 99.3 2E-09 6.9E-14 84.8 24.7 208 1-226 35-251 (330)
16 3cv0_A Peroxisome targeting si 99.3 4E-09 1.4E-13 82.9 25.8 210 1-226 34-301 (327)
17 1b89_A Protein (clathrin heavy 99.3 7E-13 2.4E-17 108.9 3.8 158 2-202 17-174 (449)
18 4eqf_A PEX5-related protein; a 99.3 1.9E-10 6.3E-15 92.6 17.9 212 1-226 112-342 (365)
19 2vq2_A PILW, putative fimbrial 99.3 3.6E-09 1.2E-13 78.6 23.2 182 32-220 8-191 (225)
20 2q7f_A YRRB protein; TPR, prot 99.3 7.8E-10 2.7E-14 83.5 19.6 187 2-206 37-223 (243)
21 3hym_B Cell division cycle pro 99.3 3.2E-09 1.1E-13 83.6 23.9 206 2-225 70-284 (330)
22 3uq3_A Heat shock protein STI1 99.3 1.2E-09 4.2E-14 82.9 20.1 190 1-206 18-237 (258)
23 3mkr_A Coatomer subunit epsilo 99.3 1.4E-09 4.9E-14 85.5 20.5 142 72-224 103-247 (291)
24 2ho1_A Type 4 fimbrial biogene 99.3 3.5E-09 1.2E-13 80.5 21.4 185 33-225 38-223 (252)
25 2pl2_A Hypothetical conserved 99.2 4.6E-09 1.6E-13 78.8 21.1 186 31-226 4-200 (217)
26 3mkr_A Coatomer subunit epsilo 99.2 4.1E-09 1.4E-13 82.8 21.6 190 2-214 79-274 (291)
27 2pl2_A Hypothetical conserved 99.2 2.2E-09 7.4E-14 80.6 18.8 184 1-204 18-213 (217)
28 3as5_A MAMA; tetratricopeptide 99.2 9.4E-09 3.2E-13 73.8 21.0 166 33-206 9-174 (186)
29 1b89_A Protein (clathrin heavy 99.2 5.3E-11 1.8E-15 97.8 8.7 102 71-195 95-196 (449)
30 3ieg_A DNAJ homolog subfamily 99.2 2.1E-08 7.3E-13 79.6 23.7 188 1-207 16-219 (359)
31 2gw1_A Mitochondrial precursor 99.2 5.6E-09 1.9E-13 87.3 21.2 206 1-226 19-319 (514)
32 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.3E-08 4.3E-13 78.2 20.4 191 2-206 19-245 (275)
33 2q7f_A YRRB protein; TPR, prot 99.1 7.5E-09 2.6E-13 78.0 18.4 186 33-227 24-209 (243)
34 3ieg_A DNAJ homolog subfamily 99.1 1.2E-07 4E-12 75.2 26.0 199 1-220 133-349 (359)
35 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.6E-13 69.0 17.5 131 72-206 3-133 (136)
36 1fch_A Peroxisomal targeting s 99.1 7.2E-08 2.4E-12 77.2 24.4 187 32-226 64-300 (368)
37 3vtx_A MAMA; tetratricopeptide 99.1 5.1E-08 1.8E-12 70.6 21.4 166 32-205 5-170 (184)
38 3cv0_A Peroxisome targeting si 99.1 7.7E-09 2.6E-13 81.3 17.8 154 42-202 148-312 (327)
39 2gw1_A Mitochondrial precursor 99.1 4.7E-09 1.6E-13 87.8 17.3 132 71-205 339-478 (514)
40 2ond_A Cleavage stimulation fa 99.1 5.5E-08 1.9E-12 76.7 21.3 185 5-206 81-271 (308)
41 3nf1_A KLC 1, kinesin light ch 99.1 9.3E-09 3.2E-13 80.2 16.2 200 1-204 40-306 (311)
42 3edt_B KLC 2, kinesin light ch 99.0 6E-09 2.1E-13 80.0 14.0 199 2-204 15-280 (283)
43 3uq3_A Heat shock protein STI1 99.0 8.5E-08 2.9E-12 72.6 19.7 187 33-226 6-222 (258)
44 3fp2_A TPR repeat-containing p 99.0 1.1E-07 3.7E-12 80.0 21.8 149 2-168 257-405 (537)
45 2ond_A Cleavage stimulation fa 99.0 7.6E-07 2.6E-11 70.1 24.5 201 5-221 33-251 (308)
46 2fo7_A Synthetic consensus TPR 99.0 1E-07 3.5E-12 64.4 17.0 130 34-170 3-132 (136)
47 3as5_A MAMA; tetratricopeptide 99.0 1.6E-07 5.3E-12 67.3 18.3 152 70-226 8-159 (186)
48 4abn_A Tetratricopeptide repea 98.9 1.8E-07 6.2E-12 78.4 20.6 184 32-226 102-307 (474)
49 3fp2_A TPR repeat-containing p 98.9 7.8E-08 2.7E-12 80.9 18.4 193 2-206 216-408 (537)
50 3vtx_A MAMA; tetratricopeptide 98.9 4.5E-07 1.5E-11 65.5 20.0 156 2-176 19-174 (184)
51 3u4t_A TPR repeat-containing p 98.9 1.1E-06 3.8E-11 67.2 21.9 188 1-205 16-208 (272)
52 3nf1_A KLC 1, kinesin light ch 98.9 1.9E-07 6.6E-12 72.7 17.0 172 32-205 27-224 (311)
53 1ouv_A Conserved hypothetical 98.9 1.1E-05 3.7E-10 62.0 26.7 178 2-207 20-217 (273)
54 4gyw_A UDP-N-acetylglucosamine 98.8 8.9E-07 3.1E-11 77.9 21.1 163 32-204 9-173 (723)
55 1ouv_A Conserved hypothetical 98.8 7.9E-06 2.7E-10 62.8 24.2 179 2-208 56-254 (273)
56 3u4t_A TPR repeat-containing p 98.8 8.3E-07 2.8E-11 67.9 17.6 192 1-206 50-251 (272)
57 2ooe_A Cleavage stimulation fa 98.7 2E-06 6.8E-11 72.8 20.2 167 32-205 321-492 (530)
58 2h6f_A Protein farnesyltransfe 98.7 2.9E-06 9.8E-11 69.2 20.3 201 2-222 111-320 (382)
59 1xnf_A Lipoprotein NLPI; TPR, 98.7 2.4E-06 8.1E-11 65.3 18.1 132 69-205 42-173 (275)
60 4abn_A Tetratricopeptide repea 98.7 7.9E-07 2.7E-11 74.5 16.4 182 1-200 115-316 (474)
61 4gyw_A UDP-N-acetylglucosamine 98.7 2E-06 6.9E-11 75.7 19.5 152 69-227 8-161 (723)
62 1na0_A Designed protein CTPR3; 98.7 2.6E-06 8.8E-11 56.6 15.0 98 70-170 9-106 (125)
63 3edt_B KLC 2, kinesin light ch 98.7 8.5E-07 2.9E-11 67.8 14.1 137 69-205 42-198 (283)
64 4i17_A Hypothetical protein; T 98.6 2E-05 6.8E-10 58.8 20.6 165 33-206 8-210 (228)
65 2ooe_A Cleavage stimulation fa 98.6 5.1E-05 1.7E-09 64.2 24.7 169 32-206 272-455 (530)
66 2h6f_A Protein farnesyltransfe 98.6 9.4E-06 3.2E-10 66.1 18.9 200 1-221 144-363 (382)
67 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.7E-05 9.4E-10 57.2 19.6 84 79-168 15-98 (213)
68 4i17_A Hypothetical protein; T 98.6 3.3E-05 1.1E-09 57.5 20.0 133 69-205 6-146 (228)
69 1qqe_A Vesicular transport pro 98.5 6.2E-06 2.1E-10 64.4 15.8 193 2-202 51-266 (292)
70 3sf4_A G-protein-signaling mod 98.5 3.4E-06 1.2E-10 68.0 14.8 200 2-205 101-336 (406)
71 2r5s_A Uncharacterized protein 98.5 1.4E-05 4.7E-10 57.4 16.2 164 33-204 7-172 (176)
72 3ulq_A Response regulator aspa 98.5 1.9E-05 6.4E-10 63.8 18.2 203 1-209 116-336 (383)
73 3ro2_A PINS homolog, G-protein 98.5 4.1E-06 1.4E-10 65.4 13.8 136 70-205 183-332 (338)
74 2vyi_A SGTA protein; chaperone 98.5 1.6E-05 5.5E-10 53.1 14.8 120 69-192 11-130 (131)
75 2vsy_A XCC0866; transferase, g 98.5 1.9E-05 6.6E-10 67.4 18.4 134 69-206 22-158 (568)
76 2vsy_A XCC0866; transferase, g 98.4 1.5E-05 5E-10 68.1 17.0 154 1-171 2-158 (568)
77 1a17_A Serine/threonine protei 98.4 3E-05 1E-09 54.3 16.0 130 70-203 13-144 (166)
78 3mv2_B Coatomer subunit epsilo 98.4 4.6E-05 1.6E-09 60.0 18.0 94 69-167 135-237 (310)
79 4a1s_A PINS, partner of inscut 98.4 3.5E-06 1.2E-10 68.4 12.2 196 1-204 61-291 (411)
80 3ulq_A Response regulator aspa 98.4 1.9E-05 6.5E-10 63.8 16.5 199 1-205 156-368 (383)
81 3ro2_A PINS homolog, G-protein 98.4 7.5E-06 2.6E-10 63.9 13.7 198 2-205 57-292 (338)
82 4a1s_A PINS, partner of inscut 98.4 7.6E-06 2.6E-10 66.4 14.2 202 2-207 140-374 (411)
83 1na0_A Designed protein CTPR3; 98.4 3E-05 1E-09 51.3 14.9 99 106-206 9-107 (125)
84 3qky_A Outer membrane assembly 98.4 0.00013 4.5E-09 55.5 20.0 170 33-206 16-225 (261)
85 3sf4_A G-protein-signaling mod 98.4 8E-06 2.7E-10 65.8 13.7 198 2-205 61-296 (406)
86 3q15_A PSP28, response regulat 98.4 8.3E-05 2.8E-09 60.0 19.6 202 1-209 114-333 (378)
87 2lni_A Stress-induced-phosphop 98.4 2.6E-05 8.9E-10 52.4 14.0 98 69-169 15-112 (133)
88 3qou_A Protein YBBN; thioredox 98.4 6.5E-05 2.2E-09 58.5 17.8 163 33-203 118-282 (287)
89 1xi4_A Clathrin heavy chain; a 98.3 6.6E-05 2.2E-09 69.6 19.6 143 32-202 1105-1247(1630)
90 1hz4_A MALT regulatory protein 98.3 9.7E-05 3.3E-09 59.2 19.0 199 1-204 106-321 (373)
91 2ifu_A Gamma-SNAP; membrane fu 98.3 4.4E-05 1.5E-09 60.0 16.7 200 2-203 5-222 (307)
92 3u3w_A Transcriptional activat 98.3 0.00037 1.3E-08 54.1 21.8 165 38-204 81-265 (293)
93 3mv2_B Coatomer subunit epsilo 98.3 4.6E-05 1.6E-09 60.0 16.1 132 69-205 99-240 (310)
94 1qqe_A Vesicular transport pro 98.3 3.8E-05 1.3E-09 59.9 15.7 172 33-204 38-227 (292)
95 2yhc_A BAMD, UPF0169 lipoprote 98.3 0.00025 8.6E-09 52.9 19.4 169 35-209 7-217 (225)
96 3q15_A PSP28, response regulat 98.3 6.7E-05 2.3E-09 60.5 17.2 198 1-204 154-364 (378)
97 3qky_A Outer membrane assembly 98.3 7.5E-05 2.6E-09 56.9 16.3 158 1-170 28-224 (261)
98 2vyi_A SGTA protein; chaperone 98.3 0.00011 3.8E-09 48.9 15.1 120 105-227 11-130 (131)
99 1elr_A TPR2A-domain of HOP; HO 98.3 2.5E-05 8.7E-10 52.2 11.9 110 71-184 5-120 (131)
100 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00031 1E-08 51.4 18.5 128 35-171 9-151 (213)
101 4ga2_A E3 SUMO-protein ligase 98.2 3E-05 1E-09 54.3 12.2 118 82-205 9-129 (150)
102 1elw_A TPR1-domain of HOP; HOP 98.2 0.00016 5.4E-09 47.2 15.1 98 70-170 4-101 (118)
103 2pzi_A Probable serine/threoni 98.2 0.00011 3.8E-09 64.3 17.9 178 1-191 404-583 (681)
104 1a17_A Serine/threonine protei 98.2 0.00012 4.2E-09 51.1 15.2 129 33-168 14-144 (166)
105 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00033 1.1E-08 52.2 18.0 156 2-171 18-214 (225)
106 3urz_A Uncharacterized protein 98.2 0.00019 6.5E-09 52.9 16.5 134 73-215 57-194 (208)
107 2lni_A Stress-induced-phosphop 98.2 0.00016 5.5E-09 48.4 14.8 102 103-206 13-114 (133)
108 2e2e_A Formate-dependent nitri 98.2 3.7E-05 1.3E-09 54.9 11.9 98 69-169 43-143 (177)
109 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00033 1.1E-08 54.4 18.1 184 34-219 77-284 (293)
110 4gco_A Protein STI-1; structur 98.2 0.00017 5.7E-09 48.9 14.4 95 72-169 15-109 (126)
111 2r5s_A Uncharacterized protein 98.2 0.0001 3.5E-09 52.7 13.9 150 1-168 19-171 (176)
112 3u3w_A Transcriptional activat 98.2 0.00012 4.1E-09 56.9 15.3 131 74-204 79-224 (293)
113 3urz_A Uncharacterized protein 98.1 0.00019 6.4E-09 52.9 15.6 130 38-180 60-194 (208)
114 1p5q_A FKBP52, FK506-binding p 98.1 0.00012 4.3E-09 58.3 15.5 129 69-203 146-292 (336)
115 2kck_A TPR repeat; tetratricop 98.1 8.6E-05 3E-09 48.0 12.2 95 109-204 9-105 (112)
116 1elr_A TPR2A-domain of HOP; HO 98.1 0.00015 5E-09 48.3 13.4 115 106-223 4-124 (131)
117 3qou_A Protein YBBN; thioredox 98.1 0.00014 4.6E-09 56.7 14.9 154 69-227 116-271 (287)
118 4gco_A Protein STI-1; structur 98.1 0.00019 6.4E-09 48.6 13.9 103 102-206 8-111 (126)
119 3q49_B STIP1 homology and U bo 98.1 0.00016 5.4E-09 49.0 13.6 98 69-169 8-105 (137)
120 2ifu_A Gamma-SNAP; membrane fu 98.1 0.00027 9.1E-09 55.4 16.5 188 2-198 50-254 (307)
121 1hz4_A MALT regulatory protein 98.1 0.0012 4.2E-08 52.7 20.3 199 2-204 67-281 (373)
122 2kck_A TPR repeat; tetratricop 98.1 6.5E-05 2.2E-09 48.7 10.6 100 69-171 5-107 (112)
123 3gw4_A Uncharacterized protein 98.1 8.3E-05 2.8E-09 53.9 12.1 137 69-205 25-176 (203)
124 1xi4_A Clathrin heavy chain; a 98.1 0.00089 3E-08 62.4 20.8 134 69-227 1104-1237(1630)
125 2vgx_A Chaperone SYCD; alterna 98.1 9.9E-05 3.4E-09 51.5 11.8 95 71-168 22-116 (148)
126 3rjv_A Putative SEL1 repeat pr 98.0 0.0014 4.6E-08 48.5 18.6 171 32-215 18-207 (212)
127 3upv_A Heat shock protein STI1 98.0 0.00035 1.2E-08 46.8 14.0 96 71-169 5-100 (126)
128 1elw_A TPR1-domain of HOP; HOP 98.0 0.00051 1.8E-08 44.6 14.6 100 105-206 3-102 (118)
129 3gyz_A Chaperone protein IPGC; 98.0 0.00014 4.7E-09 51.1 12.2 99 69-170 35-133 (151)
130 4g1t_A Interferon-induced prot 98.0 0.0003 1E-08 58.1 16.2 169 32-206 247-460 (472)
131 2dba_A Smooth muscle cell asso 98.0 0.00078 2.7E-08 45.9 15.9 98 69-170 27-128 (148)
132 3q49_B STIP1 homology and U bo 98.0 0.00031 1.1E-08 47.5 13.6 100 104-205 7-106 (137)
133 2dba_A Smooth muscle cell asso 98.0 0.00069 2.3E-08 46.2 15.3 100 104-206 26-129 (148)
134 2xm6_A Protein corresponding t 98.0 0.0048 1.7E-07 51.4 24.9 125 71-205 112-252 (490)
135 2vgx_A Chaperone SYCD; alterna 98.0 0.00021 7.2E-09 49.8 12.4 99 106-206 21-119 (148)
136 3gyz_A Chaperone protein IPGC; 98.0 0.00039 1.3E-08 48.8 13.7 128 7-142 11-138 (151)
137 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00024 8.3E-09 50.0 12.8 99 69-170 10-108 (164)
138 4ga2_A E3 SUMO-protein ligase 98.0 0.00011 3.8E-09 51.3 10.8 117 70-191 31-149 (150)
139 4f3v_A ESX-1 secretion system 98.0 0.0015 5.2E-08 50.7 17.9 132 72-207 104-239 (282)
140 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00038 1.3E-08 50.6 14.1 134 70-206 38-187 (198)
141 2xcb_A PCRH, regulatory protei 98.0 0.00027 9.2E-09 48.6 12.5 96 71-169 19-114 (142)
142 3upv_A Heat shock protein STI1 98.0 0.0005 1.7E-08 46.0 13.5 99 106-206 4-102 (126)
143 2pzi_A Probable serine/threoni 97.9 0.00017 5.8E-09 63.1 13.6 133 69-206 432-564 (681)
144 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00047 1.6E-08 48.5 13.7 101 104-206 9-109 (164)
145 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0022 7.4E-08 49.7 18.4 136 70-205 75-225 (293)
146 2xev_A YBGF; tetratricopeptide 97.9 0.00086 3E-08 44.7 13.9 89 77-170 9-105 (129)
147 2xcb_A PCRH, regulatory protei 97.9 0.00036 1.2E-08 48.0 12.2 98 107-206 19-116 (142)
148 2e2e_A Formate-dependent nitri 97.9 0.00014 4.9E-09 51.8 10.4 135 81-221 21-158 (177)
149 2xm6_A Protein corresponding t 97.9 0.0077 2.6E-07 50.2 24.5 126 70-205 147-288 (490)
150 4gcn_A Protein STI-1; structur 97.9 0.0004 1.4E-08 47.0 11.9 95 72-168 10-110 (127)
151 4g1t_A Interferon-induced prot 97.9 0.0029 9.8E-08 52.1 19.2 133 69-205 246-401 (472)
152 3gw4_A Uncharacterized protein 97.8 0.00022 7.6E-09 51.6 11.0 156 1-168 5-174 (203)
153 3ro3_A PINS homolog, G-protein 97.8 0.00024 8.3E-09 48.9 10.7 136 70-205 9-158 (164)
154 2xev_A YBGF; tetratricopeptide 97.8 0.001 3.5E-08 44.3 13.3 92 111-206 7-106 (129)
155 4gcn_A Protein STI-1; structur 97.8 0.00078 2.7E-08 45.5 12.6 107 107-216 9-121 (127)
156 1p5q_A FKBP52, FK506-binding p 97.8 0.0014 4.9E-08 52.1 15.2 131 33-168 148-292 (336)
157 4e6h_A MRNA 3'-END-processing 97.7 0.0044 1.5E-07 54.2 18.2 137 69-207 377-535 (679)
158 3k9i_A BH0479 protein; putativ 97.7 0.00015 5.2E-09 48.1 6.9 102 83-186 3-107 (117)
159 1hxi_A PEX5, peroxisome target 97.7 0.0008 2.8E-08 45.0 10.6 90 77-169 24-113 (121)
160 3k9i_A BH0479 protein; putativ 97.6 0.00023 8E-09 47.2 7.6 102 118-220 2-106 (117)
161 4e6h_A MRNA 3'-END-processing 97.6 0.0032 1.1E-07 55.0 16.4 135 70-207 434-572 (679)
162 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0077 2.6E-07 43.5 15.7 143 77-223 11-168 (198)
163 1hxi_A PEX5, peroxisome target 97.6 0.0013 4.6E-08 43.9 10.7 95 108-205 19-114 (121)
164 1wao_1 Serine/threonine protei 97.6 0.00087 3E-08 56.1 11.5 116 80-200 16-134 (477)
165 4b4t_Q 26S proteasome regulato 97.5 0.0051 1.7E-07 50.0 15.7 201 2-204 18-244 (434)
166 2c2l_A CHIP, carboxy terminus 97.5 0.0034 1.1E-07 48.5 13.7 96 33-134 5-100 (281)
167 3rjv_A Putative SEL1 repeat pr 97.5 0.015 5.1E-07 42.7 18.1 129 69-205 17-158 (212)
168 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0035 1.2E-07 52.1 13.9 130 69-204 267-414 (457)
169 2c2l_A CHIP, carboxy terminus 97.4 0.0049 1.7E-07 47.6 13.7 98 69-169 3-100 (281)
170 3rkv_A Putative peptidylprolyl 97.4 0.0041 1.4E-07 43.4 11.9 104 70-176 11-130 (162)
171 3ro3_A PINS homolog, G-protein 97.4 0.003 1E-07 43.2 10.7 137 33-169 10-157 (164)
172 1ihg_A Cyclophilin 40; ppiase 97.4 0.0054 1.8E-07 49.5 13.6 123 71-196 224-361 (370)
173 3rkv_A Putative peptidylprolyl 97.3 0.0084 2.9E-07 41.8 12.8 100 106-206 11-127 (162)
174 2l6j_A TPR repeat-containing p 97.3 0.0024 8.3E-08 41.1 9.2 63 106-169 4-66 (111)
175 3n71_A Histone lysine methyltr 97.2 0.0042 1.4E-07 52.2 12.0 125 80-204 319-463 (490)
176 3dra_A Protein farnesyltransfe 97.2 0.048 1.6E-06 42.8 18.1 187 3-204 84-286 (306)
177 1klx_A Cysteine rich protein B 97.2 0.022 7.7E-07 38.8 13.6 113 84-208 9-129 (138)
178 3e4b_A ALGK; tetratricopeptide 97.2 0.074 2.5E-06 43.9 22.5 160 33-207 177-353 (452)
179 3e4b_A ALGK; tetratricopeptide 97.2 0.021 7.2E-07 47.2 15.4 122 72-203 178-314 (452)
180 2hr2_A Hypothetical protein; a 97.2 0.031 1.1E-06 39.4 14.0 109 72-183 13-149 (159)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.012 4.2E-07 48.8 14.0 117 106-224 268-398 (457)
182 1wao_1 Serine/threonine protei 97.1 0.0022 7.7E-08 53.6 9.3 120 39-165 13-134 (477)
183 4b4t_Q 26S proteasome regulato 97.1 0.023 7.8E-07 46.1 15.0 133 72-204 57-203 (434)
184 4f3v_A ESX-1 secretion system 97.1 0.046 1.6E-06 42.3 15.6 137 37-182 107-247 (282)
185 1na3_A Designed protein CTPR2; 97.1 0.011 3.6E-07 36.4 10.0 61 72-134 11-71 (91)
186 2kat_A Uncharacterized protein 97.1 0.012 4.1E-07 38.3 10.7 78 89-169 4-81 (115)
187 1ihg_A Cyclophilin 40; ppiase 97.0 0.021 7.2E-07 46.0 13.9 113 108-223 225-353 (370)
188 2kat_A Uncharacterized protein 97.0 0.0081 2.8E-07 39.2 9.7 99 124-224 3-102 (115)
189 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0031 1.1E-07 50.2 8.8 129 71-205 180-328 (338)
190 2l6j_A TPR repeat-containing p 97.0 0.0036 1.2E-07 40.2 7.5 68 69-140 3-70 (111)
191 1na3_A Designed protein CTPR2; 97.0 0.018 6.1E-07 35.3 10.5 79 106-186 9-87 (91)
192 3ma5_A Tetratricopeptide repea 96.8 0.026 8.9E-07 35.9 10.6 62 106-168 7-68 (100)
193 3n71_A Histone lysine methyltr 96.6 0.017 5.8E-07 48.5 10.4 101 69-169 350-463 (490)
194 2hr2_A Hypothetical protein; a 96.5 0.12 4.2E-06 36.3 14.2 111 108-218 13-149 (159)
195 3qwp_A SET and MYND domain-con 96.4 0.031 1.1E-06 46.1 10.9 93 112-204 293-399 (429)
196 2if4_A ATFKBP42; FKBP-like, al 96.3 0.022 7.6E-07 45.2 9.0 96 107-205 180-293 (338)
197 3qww_A SET and MYND domain-con 96.3 0.029 9.8E-07 46.3 9.7 87 118-204 310-410 (433)
198 3ma5_A Tetratricopeptide repea 96.2 0.046 1.6E-06 34.7 8.6 64 69-134 6-69 (100)
199 3qwp_A SET and MYND domain-con 96.1 0.045 1.5E-06 45.1 10.1 93 76-168 293-398 (429)
200 2uy1_A Cleavage stimulation fa 96.1 0.23 8E-06 41.5 14.6 124 71-204 287-412 (493)
201 3qww_A SET and MYND domain-con 95.9 0.077 2.6E-06 43.8 10.7 86 83-168 311-409 (433)
202 1zu2_A Mitochondrial import re 95.8 0.084 2.9E-06 37.1 9.0 113 82-205 14-147 (158)
203 2kc7_A BFR218_protein; tetratr 95.4 0.13 4.5E-06 32.0 8.3 55 79-135 9-64 (99)
204 2kc7_A BFR218_protein; tetratr 95.1 0.27 9.2E-06 30.5 9.1 58 113-171 7-65 (99)
205 3dra_A Protein farnesyltransfe 95.1 0.89 3.1E-05 35.5 19.7 168 32-205 67-250 (306)
206 1v54_E Cytochrome C oxidase po 94.7 0.48 1.6E-05 30.4 10.5 65 156-221 25-89 (109)
207 3mkq_A Coatomer beta'-subunit; 94.6 1.2 4.1E-05 39.0 14.8 47 80-133 662-708 (814)
208 1dce_A Protein (RAB geranylger 94.3 2.3 7.7E-05 36.3 16.8 135 50-191 89-241 (567)
209 1pc2_A Mitochondria fission pr 94.2 0.66 2.2E-05 32.2 9.6 80 87-169 15-99 (152)
210 3ly7_A Transcriptional activat 94.1 1.8 6.2E-05 34.7 14.8 65 139-205 275-339 (372)
211 1pc2_A Mitochondria fission pr 94.1 0.64 2.2E-05 32.3 9.5 84 121-206 13-101 (152)
212 1wy6_A Hypothetical protein ST 94.1 0.91 3.1E-05 31.1 13.6 137 49-209 22-158 (172)
213 3mkq_A Coatomer beta'-subunit; 93.9 0.96 3.3E-05 39.7 12.7 29 69-97 680-708 (814)
214 3ly7_A Transcriptional activat 93.8 2.1 7.2E-05 34.4 15.0 62 105-168 276-337 (372)
215 1zu2_A Mitochondrial import re 93.8 0.68 2.3E-05 32.4 9.2 96 3-113 17-131 (158)
216 2y69_E Cytochrome C oxidase su 93.3 1.2 4.2E-05 30.2 10.5 63 158-221 70-132 (152)
217 1dce_A Protein (RAB geranylger 93.3 3.4 0.00012 35.1 17.9 150 51-206 46-222 (567)
218 2ff4_A Probable regulatory pro 93.2 0.68 2.3E-05 37.5 9.6 116 68-184 110-253 (388)
219 4h7y_A Dual specificity protei 93.1 1.5 5.1E-05 30.5 10.1 100 69-171 12-124 (161)
220 3u64_A Protein TP_0956; tetrat 93.1 1.4 4.8E-05 34.2 10.7 113 69-184 153-285 (301)
221 2uy1_A Cleavage stimulation fa 92.8 3.5 0.00012 34.4 13.7 97 84-187 334-447 (493)
222 3dss_A Geranylgeranyl transfer 92.8 2.9 0.0001 33.0 18.9 166 32-205 108-304 (331)
223 1klx_A Cysteine rich protein B 92.7 1.5 5.1E-05 29.4 14.0 110 50-172 11-128 (138)
224 4h7y_A Dual specificity protei 92.6 1.8 6.1E-05 30.1 9.9 115 105-222 12-139 (161)
225 2ff4_A Probable regulatory pro 91.7 1.2 4.2E-05 35.9 9.4 70 75-146 176-250 (388)
226 1v54_E Cytochrome C oxidase po 91.6 1.7 5.9E-05 27.8 9.2 63 85-149 25-87 (109)
227 3dss_A Geranylgeranyl transfer 91.3 4.5 0.00015 31.9 18.9 151 50-206 90-268 (331)
228 2v5f_A Prolyl 4-hydroxylase su 91.2 1.9 6.4E-05 27.3 8.9 61 109-169 8-74 (104)
229 2v5f_A Prolyl 4-hydroxylase su 90.5 2.2 7.5E-05 27.0 8.4 68 139-206 3-76 (104)
230 2y69_E Cytochrome C oxidase su 90.5 2.4 8.1E-05 28.8 8.1 62 122-184 69-130 (152)
231 3u64_A Protein TP_0956; tetrat 90.4 4.3 0.00015 31.5 10.7 105 105-213 153-279 (301)
232 3bee_A Putative YFRE protein; 90.1 2.3 7.8E-05 26.5 8.7 45 123-168 26-70 (93)
233 1nzn_A CGI-135 protein, fissio 89.3 2.9 9.9E-05 27.9 8.0 81 122-204 17-102 (126)
234 3q7a_A Farnesyltransferase alp 86.9 10 0.00035 30.1 23.5 131 33-169 89-236 (349)
235 3q7a_A Farnesyltransferase alp 86.5 11 0.00037 30.0 19.9 150 51-206 71-238 (349)
236 1nzn_A CGI-135 protein, fissio 86.1 5.7 0.0002 26.5 8.6 82 85-169 16-102 (126)
237 1wy6_A Hypothetical protein ST 86.1 6.3 0.00022 27.0 14.7 85 82-173 73-157 (172)
238 3mkq_B Coatomer subunit alpha; 86.1 7.3 0.00025 27.7 11.2 109 69-202 33-141 (177)
239 3mkq_B Coatomer subunit alpha; 85.6 7.8 0.00027 27.5 13.1 101 77-199 12-112 (177)
240 3bee_A Putative YFRE protein; 84.0 5.7 0.00019 24.6 9.5 79 139-221 4-86 (93)
241 2ion_A PDCD4, programmed cell 80.3 10 0.00035 26.1 7.6 64 72-137 11-76 (152)
242 4b4t_P 26S proteasome regulato 78.6 26 0.00089 28.7 15.9 194 2-204 30-246 (445)
243 2nsz_A Programmed cell death p 78.0 13 0.00043 24.8 8.9 62 73-136 10-73 (129)
244 4gns_B Protein CSD3, chitin bi 77.9 37 0.0013 30.1 13.4 127 71-202 249-397 (754)
245 4gns_B Protein CSD3, chitin bi 75.5 37 0.0013 30.0 11.3 52 78-132 345-397 (754)
246 2ion_A PDCD4, programmed cell 75.2 16 0.00056 25.1 7.4 79 108-187 11-94 (152)
247 2uwj_G Type III export protein 74.7 14 0.00048 23.6 7.1 86 85-180 21-106 (115)
248 2fu4_A Ferric uptake regulatio 73.8 11 0.00039 22.4 5.8 60 132-192 8-68 (83)
249 2p58_C Putative type III secre 73.7 15 0.00051 23.5 7.9 86 85-180 22-107 (116)
250 3twr_A Tankyrase-2; ankyrin re 71.2 10 0.00034 25.7 5.7 14 77-90 46-59 (165)
251 2keb_A DNA polymerase subunit 70.5 17 0.00059 22.9 7.2 59 159-217 27-88 (101)
252 2uwj_G Type III export protein 69.5 19 0.00066 23.0 6.5 80 120-207 20-99 (115)
253 2p58_C Putative type III secre 68.5 20 0.0007 22.9 7.3 80 120-207 21-100 (116)
254 1zbp_A Hypothetical protein VP 67.3 22 0.00074 27.2 7.0 117 77-205 4-129 (273)
255 4b4t_R RPN7, 26S proteasome re 66.9 50 0.0017 26.8 10.6 96 72-169 133-236 (429)
256 4b4t_R RPN7, 26S proteasome re 66.4 51 0.0018 26.7 12.4 98 108-205 133-237 (429)
257 4fhn_B Nucleoporin NUP120; pro 66.3 84 0.0029 29.2 15.7 113 78-194 850-989 (1139)
258 2xig_A Ferric uptake regulatio 65.3 22 0.00074 24.2 6.3 59 132-191 18-76 (150)
259 4ets_A Ferric uptake regulatio 63.8 16 0.00055 25.3 5.4 70 87-157 14-85 (162)
260 2fe3_A Peroxide operon regulat 62.1 22 0.00076 24.0 5.8 59 132-191 13-71 (145)
261 4fhn_B Nucleoporin NUP120; pro 61.3 1E+02 0.0036 28.6 14.1 137 75-222 817-982 (1139)
262 4fke_A Aminopeptidase N; zinc 61.3 95 0.0032 28.1 14.8 157 37-201 691-857 (909)
263 1k1a_A B-cell lymphoma 3-encod 60.8 13 0.00046 26.7 4.9 159 38-211 12-178 (241)
264 3t8k_A Uncharacterized protein 58.3 33 0.0011 24.0 6.5 133 75-208 40-183 (186)
265 1mzb_A Ferric uptake regulatio 57.9 25 0.00085 23.4 5.5 35 121-155 33-67 (136)
266 4ets_A Ferric uptake regulatio 57.9 20 0.0007 24.8 5.1 63 131-194 23-87 (162)
267 2nsz_A Programmed cell death p 57.6 38 0.0013 22.4 10.9 101 108-209 9-119 (129)
268 3eiq_C Programmed cell death p 56.2 75 0.0025 25.3 8.7 24 110-133 221-244 (358)
269 3aji_A 26S proteasome non-ATPa 55.6 24 0.00083 25.1 5.5 153 36-211 7-167 (231)
270 2keb_A DNA polymerase subunit 55.1 37 0.0013 21.4 6.2 57 124-182 27-88 (101)
271 2w57_A Ferric uptake regulatio 54.2 29 0.00099 23.6 5.4 34 157-190 33-66 (150)
272 3t8k_A Uncharacterized protein 52.9 46 0.0016 23.2 6.5 130 78-211 11-149 (186)
273 3eu9_A Huntingtin-interacting 52.8 36 0.0012 24.2 6.1 122 75-211 44-171 (240)
274 2d2s_A Exocyst complex compone 52.5 68 0.0023 23.7 8.4 89 77-168 25-118 (235)
275 3eiq_C Programmed cell death p 52.3 42 0.0014 26.7 6.6 79 143-222 219-299 (358)
276 2o03_A Probable zinc uptake re 51.5 25 0.00084 23.2 4.6 45 112-156 16-60 (131)
277 3mwm_A ZUR, putative metal upt 50.7 20 0.00069 24.0 4.1 46 111-156 18-63 (139)
278 3eyy_A Putative iron uptake re 50.5 26 0.00089 23.7 4.6 33 123-155 34-66 (145)
279 2d2s_A Exocyst complex compone 50.3 74 0.0025 23.5 11.1 89 111-202 23-117 (235)
280 1wgl_A TOLL-interacting protei 50.2 33 0.0011 19.3 4.3 23 153-175 35-57 (59)
281 3eyy_A Putative iron uptake re 50.2 51 0.0018 22.2 6.1 63 130-194 8-70 (145)
282 3mwm_A ZUR, putative metal upt 49.6 18 0.00062 24.3 3.7 51 144-194 16-66 (139)
283 3hra_A Ankyrin repeat family p 49.6 28 0.00097 24.1 5.0 127 76-212 42-174 (201)
284 2b7e_A PRE-mRNA processing pro 49.1 24 0.00081 20.0 3.4 34 4-46 2-36 (59)
285 1ug3_A EIF4GI, eukaryotic prot 47.7 81 0.0028 24.7 7.7 25 74-98 15-39 (339)
286 2o03_A Probable zinc uptake re 47.5 21 0.00073 23.6 3.7 48 146-193 15-62 (131)
287 2zu6_B Programmed cell death p 46.7 93 0.0032 24.1 7.7 24 74-97 170-193 (307)
288 3f3f_C Nucleoporin NUP85; stru 46.5 1.1E+02 0.0036 26.2 8.4 86 72-160 481-568 (570)
289 1ug3_A EIF4GI, eukaryotic prot 46.5 47 0.0016 26.1 6.1 95 109-204 14-113 (339)
290 3bu8_A Telomeric repeat-bindin 45.9 87 0.003 23.0 7.1 50 86-135 88-143 (235)
291 2qq8_A TBC1 domain family memb 45.8 1E+02 0.0036 23.9 8.1 44 128-171 215-258 (334)
292 2rfa_A Transient receptor pote 45.8 74 0.0025 22.5 6.9 55 113-172 125-182 (232)
293 3l6a_A Eukaryotic translation 45.2 1.1E+02 0.0039 24.2 8.8 24 74-97 16-39 (364)
294 3ffl_A Anaphase-promoting comp 44.9 77 0.0026 22.1 9.4 59 74-132 24-89 (167)
295 1wdy_A 2-5A-dependent ribonucl 43.6 57 0.002 23.8 6.1 87 75-175 41-132 (285)
296 2fu4_A Ferric uptake regulatio 43.4 49 0.0017 19.4 7.8 58 165-223 6-64 (83)
297 2zu6_B Programmed cell death p 43.0 93 0.0032 24.1 7.2 69 144-213 169-239 (307)
298 3txn_A 26S proteasome regulato 42.8 1.3E+02 0.0045 24.2 17.1 22 112-133 105-126 (394)
299 2etb_A Transient receptor pote 42.0 22 0.00075 26.0 3.5 95 76-176 5-118 (256)
300 3pvs_A Replication-associated 41.9 1.4E+02 0.0048 24.3 9.1 37 188-224 267-303 (447)
301 1k1a_A B-cell lymphoma 3-encod 41.3 34 0.0012 24.4 4.4 126 75-211 11-144 (241)
302 3ibx_A TENA, HP1287, putative 40.8 94 0.0032 22.5 6.7 86 137-222 109-205 (221)
303 3c1d_A Protein ORAA, regulator 40.0 88 0.003 21.4 10.8 52 85-139 45-96 (159)
304 2rg8_A Programmed cell death p 39.9 53 0.0018 22.8 4.9 64 109-175 13-78 (165)
305 4g8k_A 2-5A-dependent ribonucl 39.9 57 0.002 24.9 5.7 18 77-94 172-189 (337)
306 2rg8_A Programmed cell death p 39.3 38 0.0013 23.5 4.1 96 72-183 12-109 (165)
307 3jxi_A Vanilloid receptor-rela 38.8 22 0.00076 26.0 3.0 94 77-176 9-121 (260)
308 1oai_A Nuclear RNA export fact 38.7 28 0.00095 19.6 2.7 26 82-107 32-57 (59)
309 3ffl_A Anaphase-promoting comp 38.2 1E+02 0.0034 21.5 8.2 102 101-202 13-148 (167)
310 3f6q_A Integrin-linked protein 37.9 80 0.0027 21.3 5.7 118 76-212 42-167 (179)
311 2xig_A Ferric uptake regulatio 37.7 92 0.0032 21.0 7.8 59 163-222 14-72 (150)
312 3o48_A Mitochondria fission 1 37.4 92 0.0031 20.9 8.8 45 158-204 60-106 (134)
313 3qye_A TBC1 domain family memb 36.9 1.1E+02 0.0038 23.6 6.9 47 127-173 209-255 (331)
314 2f6m_A Suppressor protein STP2 36.6 54 0.0018 18.9 3.7 44 144-188 5-48 (65)
315 2w57_A Ferric uptake regulatio 36.6 97 0.0033 20.9 7.5 58 164-222 5-63 (150)
316 3f3f_C Nucleoporin NUP85; stru 36.5 1.9E+02 0.0065 24.6 8.4 73 121-196 496-569 (570)
317 4e2i_2 DNA polymerase alpha su 36.2 70 0.0024 19.2 5.2 57 160-216 5-64 (78)
318 1awc_B Protein (GA binding pro 35.8 90 0.0031 20.3 7.0 13 81-93 10-22 (153)
319 3l6a_A Eukaryotic translation 35.5 1.7E+02 0.0057 23.3 8.8 64 108-176 14-83 (364)
320 3esl_A Checkpoint serine/threo 34.6 1.3E+02 0.0044 21.7 10.5 74 102-175 73-149 (202)
321 4b4t_S RPN3, 26S proteasome re 34.6 2.1E+02 0.0071 24.1 9.1 28 106-133 231-258 (523)
322 3hra_A Ankyrin repeat family p 33.6 47 0.0016 22.9 4.0 119 76-196 75-195 (201)
323 1mzb_A Ferric uptake regulatio 33.4 1E+02 0.0035 20.2 7.8 63 131-194 8-71 (136)
324 3esl_A Checkpoint serine/threo 31.8 1.5E+02 0.005 21.5 11.3 71 69-140 76-149 (202)
325 3ygs_P Procaspase 9; apoptosis 31.5 94 0.0032 19.2 4.8 36 121-160 52-87 (97)
326 1qsa_A Protein (soluble lytic 31.5 2.5E+02 0.0085 24.1 11.5 115 85-204 229-347 (618)
327 3ljn_A Hypothetical protein; a 31.3 1.2E+02 0.004 23.4 6.3 60 76-140 56-115 (364)
328 3no6_A Transcriptional activat 30.6 1.6E+02 0.0056 21.7 7.5 21 104-124 127-148 (248)
329 1wdy_A 2-5A-dependent ribonucl 30.1 49 0.0017 24.1 3.7 79 113-195 152-235 (285)
330 2dod_A Transcription elongatio 29.3 91 0.0031 18.8 4.1 32 4-44 16-47 (82)
331 3ltm_A Alpha-REP4; protein eng 29.1 1.5E+02 0.005 20.6 13.9 140 69-225 63-202 (211)
332 2f8y_A Notch homolog 1, transl 29.0 1E+02 0.0035 21.5 5.2 121 75-211 60-186 (223)
333 2fe3_A Peroxide operon regulat 29.0 1.3E+02 0.0044 20.0 8.6 58 164-222 10-67 (145)
334 3hzj_A Rabgap1L, RAB GTPase-ac 28.4 2E+02 0.0067 21.9 7.6 46 127-172 175-220 (310)
335 2ko4_A Mediator of RNA polymer 28.3 63 0.0021 19.4 3.1 30 137-166 32-61 (81)
336 3qil_A Clathrin heavy chain 1; 28.1 81 0.0028 20.8 3.9 44 148-194 39-82 (125)
337 3ltm_A Alpha-REP4; protein eng 27.9 1.5E+02 0.0052 20.5 14.3 82 104-193 62-143 (211)
338 3kea_A K1L; tropism, ANK repea 26.8 68 0.0023 23.9 4.0 81 77-166 99-183 (285)
339 3bu8_A Telomeric repeat-bindin 26.7 1.9E+02 0.0065 21.2 7.3 49 122-170 88-143 (235)
340 2rfa_A Transient receptor pote 26.7 1.7E+02 0.0057 20.5 6.8 124 76-209 40-184 (232)
341 2yru_A Steroid receptor RNA ac 26.2 1.4E+02 0.0047 19.4 8.4 42 92-134 48-89 (118)
342 1y8m_A FIS1; mitochondria, unk 25.9 1.6E+02 0.0054 20.0 10.9 46 124-169 60-105 (144)
343 3r88_A Anthranilate phosphorib 25.8 2.2E+02 0.0077 22.7 6.9 63 108-171 25-89 (377)
344 1lsh_A Lipovitellin (LV-1N, LV 25.6 4E+02 0.014 24.6 15.6 155 33-201 311-479 (1056)
345 4fn6_A Thiaminase-2, thiaminas 25.4 1.9E+02 0.0066 20.9 9.0 24 102-125 106-130 (229)
346 3pvs_A Replication-associated 25.3 2.8E+02 0.0094 22.6 12.8 36 152-187 266-301 (447)
347 1jog_A Hypothetical protein HI 25.2 1.2E+02 0.004 20.5 4.6 46 86-132 54-102 (146)
348 3ezq_B Protein FADD; apoptosis 24.9 1.1E+02 0.0039 19.9 4.3 44 87-133 47-90 (122)
349 2pnn_A Transient receptor pote 23.9 72 0.0025 23.4 3.6 94 76-175 16-128 (273)
350 3kyj_A CHEA3, putative histidi 23.7 1.7E+02 0.0058 19.6 8.6 26 160-185 73-98 (144)
351 1uzc_A Hypothetical protein FL 23.4 1.2E+02 0.0041 17.7 3.9 33 4-45 14-46 (71)
352 2ijq_A Hypothetical protein; s 23.3 1.9E+02 0.0064 20.0 8.1 52 118-169 44-103 (161)
353 3ljn_A Hypothetical protein; a 22.7 2.6E+02 0.0088 21.3 7.7 97 69-175 17-115 (364)
354 1wty_A Hypothetical protein TT 22.7 1.6E+02 0.0054 18.9 5.7 64 86-156 4-68 (119)
355 1b79_A DNAB helicase; hexamer, 22.6 1.6E+02 0.0055 18.9 6.3 54 163-219 61-117 (119)
356 1otr_A Protein CUE2; protein-p 22.6 1E+02 0.0034 16.6 5.3 40 123-167 5-44 (49)
357 2ilr_A Protein FACE, fanconi a 22.5 2.5E+02 0.0087 21.2 12.2 94 128-223 147-246 (264)
358 4f52_E Glomulin; cullin-ring E 22.2 2.6E+02 0.009 23.9 7.1 35 61-95 19-53 (596)
359 3kea_A K1L; tropism, ANK repea 21.7 48 0.0016 24.8 2.3 114 74-201 63-183 (285)
360 2dzn_A Probable 26S proteasome 21.7 73 0.0025 22.4 3.2 115 75-206 38-163 (228)
361 2qcx_A Transcriptional activat 21.0 2.6E+02 0.009 20.8 8.1 19 106-124 136-154 (263)
362 3utm_A Tankyrase-1; tankyrase, 20.7 91 0.0031 23.5 3.7 19 75-93 60-78 (351)
363 2qfz_A TBC1 domain family memb 20.6 1.8E+02 0.0063 22.5 5.5 49 127-175 230-278 (345)
364 1lsh_A Lipovitellin (LV-1N, LV 20.3 5.1E+02 0.017 23.9 11.9 40 120-164 323-362 (1056)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7e-37 Score=258.57 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=172.9
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHhhcCCC
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD---------LDRAYQTFEAVGSSFGL 102 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~ 102 (228)
...++.+|++|+|.|+ ..+++..+.+|... ...||..|||+||++|+..+. ++.|.++|++|..+ |+
T Consensus 26 e~~l~~~id~c~k~G~--~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~ 101 (501)
T 4g26_A 26 EALLKQKLDMCSKKGD--VLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KV 101 (501)
T ss_dssp HHHHHHHHHHTTTSCC--HHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CC
Confidence 4568999999999994 55665566555543 345699999999999987654 78999999999995 99
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 027083 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182 (228)
Q Consensus 103 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 182 (228)
.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 183 RRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
|.+|++.|++++|.++++.|.+.|..|+..+|..++..++.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.3e-34 Score=240.51 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=162.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh-------hcHHHHHHHHhchhhcCCCCCCHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF-------ETLDSVYFQLENLSRAEPPYKSVAAI 73 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (228)
.|++++|+.+|++|.+. ++.|+..|||+||.+|++.+. .....++..+.+|... ...||..||
T Consensus 39 ~G~~~~A~~lf~~M~~~---------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~~ty 108 (501)
T 4g26_A 39 KGDVLEALRLYDEARRN---------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNEATF 108 (501)
T ss_dssp SCCHHHHHHHHHHHHHH---------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHc---------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCHHHH
Confidence 48999999999999998 888889999999999998763 1245555555555543 345699999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
|++|++|++.|++++|.++|++|.+. |+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
.|++++|.++|++|++.|+.|+..||+.|+..|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=7.9e-26 Score=198.83 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSS--FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
-..|||++|++||+.|++++|.++|++|.+. .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999887631 28999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 027083 147 LVDAHLTNRD-QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN 210 (228)
Q Consensus 147 li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 210 (228)
||+++|+.|+ .++|.++|++|.+.|+.||..||+.++.+..+.+- .+..+.+ +-+++|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCC
Confidence 9999999998 58899999999999999999999999987766543 3333333 4455554
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=7.6e-24 Score=186.40 Aligned_cols=121 Identities=10% Similarity=0.003 Sum_probs=110.7
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 027083 102 LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS---LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 102 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 178 (228)
..--..|||+||++||++|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567999999999999999999999988764 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 179 LKKVRRRCVREMDE-ESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 179 ~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
||+||.++++.|+. +.|.++++.|.+.|+.||..+|+.++.+.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 99999999999985 789999999999999999999996554443
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.5e-17 Score=142.49 Aligned_cols=188 Identities=9% Similarity=-0.040 Sum_probs=142.1
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
..+|+.+...|.+.|+ ..++...+.++....+. +..+|+.+..+|.+.|++++|.++|+++... ...+..+|+.
T Consensus 373 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 446 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNK--ISEARRYFSKSSTMDPQ--FGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLF 446 (597)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHH
T ss_pred HHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 5567778888888884 44444444444443332 6778888888888888888888888888762 3457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS--KETLKKVRRR 185 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~ 185 (228)
+..+|.+.|++++|.++|+++.+.. ..+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 8888888888888888888887654 346788888888888888888888888888765 66777 7788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 186 CVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
|.+.|++++|..+++.+.+.+ +.+...|..+...+...++|
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 888888888888888888765 33677777777777766655
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=4.4e-17 Score=139.69 Aligned_cols=209 Identities=9% Similarity=-0.011 Sum_probs=172.8
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|+ ..++...+.++....+. +..+|+.+...|
T Consensus 318 ~g~~~~A~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 383 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID----------PYNLDVYPLHLASLHESGE--KNKLYLISNDLVDRHPE--KAVTWLAVGIYY 383 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC----------TTCCTTHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTT--SHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC----------cccHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCcc--cHHHHHHHHHHH
Confidence 367788888888876552 2245678899999999884 45555555555544443 788999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
.+.|++++|.++|+++.+. ...+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.+..+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999863 23467799999999999999999999999998765 35889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCcc--hhhHHHHHHHHHhhhhc
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF----DIRMN--TENRKNILFNLEYSASY 227 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~l~~~~~~ 227 (228)
.++|+++.+.. ..+..+|+.+...|.+.|++++|..+++.+.+. +..|+ ...|..+...+...++|
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 99999998753 347899999999999999999999999999887 77887 78888888888766654
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=2.6e-11 Score=98.53 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+..++..+...+...|++++|...|+++.+. -+.+..+|+.+...|.+.|++++|...|+++.+.. +.+..+|+.+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 5667777777777788888888888777762 12245577777778888888888888888776653 44677777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+.+.|++++|.+.++++.+.. ..+..++..+...+.+.|++++|...++.+.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888887776532 234677777777888888888888888777763
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=6.2e-11 Score=96.31 Aligned_cols=207 Identities=13% Similarity=0.016 Sum_probs=169.1
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...++++.+... ....+|+.+...+.+.|+ ...+...+.+.....+. +...|..+-..+
T Consensus 148 ~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~lg~~~ 213 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQP----------NFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLDPN--FLDAYINLGNVL 213 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Confidence 4899999999999988731 123578889999999994 55555555555554443 678899999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
...|++++|...|++.... .| +..+++.+...|.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 214 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998763 34 57889999999999999999999999998864 2357889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
|.+.++++.+.. .++..++..+...+...|++++|...++.+.+.. +.+...+..+...+...++|
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 999999988753 4578999999999999999999999999998753 23566777777777666554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=9e-11 Score=96.90 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
+...|++++|...|+++... .+.+...+..+..+|.+.|++++|...|+++.+.. ..+..+|..+...|...|++++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555555442 22344455555556666666666666666554432 2345556666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHH------------HHHHHhcCChhhHHHHHHHHHH
Q 027083 160 ALSVIDEMVNAGFAPS-KETLKKV------------RRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~-~~t~~~l------------i~~~~~~~~~~~a~~~~~~m~~ 204 (228)
|.+.|+++... .|+ ...+..+ ...+...|++++|...+..+.+
T Consensus 230 A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 230 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666655532 232 2222222 4555555666666666555555
No 10
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=3.6e-10 Score=84.12 Aligned_cols=198 Identities=8% Similarity=-0.118 Sum_probs=151.6
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+... .....|..+...|.+.|+ ...+...+.+.....+. +..++..+...+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~ 86 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDP----------KNELAWLVRAEIYQYLKV--NDKAQESFRQALSIKPD--SAEINNNYGWFL 86 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCc----------cchHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 3788899999888776521 123467788888998884 45555555554444443 677888899999
Q ss_pred HHc-CCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 81 ANI-WDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 81 ~~~-~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
... |++++|...+++... .+..|+ ...+..+...+.+.|++++|...|++..+.. ..+...+..+...+.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 999 999999999999987 244454 5678888899999999999999999987764 235788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHH
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKN 216 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 216 (228)
+|.+.+++.....-..+...+..+...+...|+.+.+..++..+.+.. |+......
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 999999988765422467778888888889999999999998887643 44444443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=1.2e-10 Score=96.17 Aligned_cols=187 Identities=15% Similarity=0.054 Sum_probs=150.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...|+++.+.. +....+|..+..+|.+.|+ ...+...+.+.....+. +..++..+...|
T Consensus 39 ~g~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 104 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGD----------PDNYIAYYRRATVFLAMGK--SKAALPDLTKVIQLKMD--FTAARLQRGHLL 104 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Confidence 478899999999887652 1224578889999999994 55555555555554443 678999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHH------------HHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIY------------AFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~------------~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
...|++++|...|+++... .|+. ..+..+.. .+.+.|++++|...|+++.+.. ..+...+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999999863 3543 55665544 4899999999999999998764 3478889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
..+..+|.+.|++++|.++|+++.... ..+..++..+...+...|+.++|...+..+.+..
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987642 3468899999999999999999999999998653
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=5.5e-10 Score=85.05 Aligned_cols=188 Identities=15% Similarity=0.057 Sum_probs=149.0
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...+++..+.. +.....+..+...|.+.|+ ...+...+.+.....+. +...+..+...+.
T Consensus 51 ~~~~~A~~~~~~al~~~----------~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~ 116 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEID----------PSSADAHAALAVVFQTEME--PKLADEEYRKALASDSR--NARVLNNYGGFLY 116 (252)
T ss_dssp TCTGGGHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcC--cHHHHHHHHHHHH
Confidence 67778888888876652 1123567788889999884 55555555554444443 6788999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
..|+.++|...|++... .+..| +...+..+...|.+.|++++|...|++..+.. ..+...+..+...+.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999987 24556 45678888899999999999999999987764 33688899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.+.+++..+.. ..+...+..+...+...|+.++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999887643 3567788888899999999999999999988764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=1.3e-10 Score=93.56 Aligned_cols=207 Identities=8% Similarity=-0.013 Sum_probs=141.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...++++.+.. +....+|..+...|.+.|+ ...+...+.+.....+. +..+|..+...|.
T Consensus 79 g~~~~A~~~~~~al~~~----------p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQD----------PGDAEAWQFLGITQAENEN--EQAAIVALQRCLELQPN--NLKALMALAVSYT 144 (365)
T ss_dssp TCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----------cCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Confidence 78899999999987763 1224578889999999994 55555555555544443 6889999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCC-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhhHHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPD-----------IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PNAMSYSLLVD 149 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~ 149 (228)
..|+.++|...|+++.+. .|+ ..+++.+...|.+.|++++|...|+++.+.... ++..+|..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999998763 232 223334567778888888888888887765321 15777888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
.+.+.|++++|.+.+++..+.. ..+..+|..+...+...|++++|...++...+..-. +...+..+-..+...++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 8888888888888888776542 235677888888888888888888888887775322 355566665555555443
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.35 E-value=1.3e-09 Score=87.37 Aligned_cols=211 Identities=11% Similarity=0.013 Sum_probs=150.1
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...++++.+.. +....+|..+..++.+.|+ ...+...+.+.....+. +..++..+...+
T Consensus 77 ~g~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~--~~~~~~~l~~~~ 142 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQD----------PKHMEAWQYLGTTQAENEQ--ELLAISALRRCLELKPD--NQTALMALAVSF 142 (368)
T ss_dssp TTCHHHHHHHHHHHHHSC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHCcC--HHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 367788888888876552 1123467777788888774 44444444444443433 667788888888
Q ss_pred HHcCCHHHHHHHHHHHhhcCC----------------------------------------------CCC---CHHhHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFG----------------------------------------------LTP---DIHSYNA 111 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~----------------------------------------------~~p---~~~~~~~ 111 (228)
...|+.++|...++++..... ..| +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 888888888877777654200 112 4677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+...|.+.|++++|...|++..+.. ..+..+|..+...+.+.|++++|.+.+++..... ..+..++..+...+.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 8888999999999999999887653 3357788889999999999999999998877642 2356788888888999999
Q ss_pred hhhHHHHHHHHHHcCCCc----------chhhHHHHHHHHHhhhhc
Q 027083 192 EESNDRVEALAKKFDIRM----------NTENRKNILFNLEYSASY 227 (228)
Q Consensus 192 ~~~a~~~~~~m~~~g~~~----------~~~~~~~li~~l~~~~~~ 227 (228)
+++|...+....+..-.. ....+..+..++..++++
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999888887643221 156777777777766654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=2e-09 Score=84.75 Aligned_cols=208 Identities=7% Similarity=-0.103 Sum_probs=160.2
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...++++.+.. +.....+..+..++.+.|+ ...+...+.+.....+. +...|..+-..+
T Consensus 35 ~g~~~~A~~~~~~~l~~~----------p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 100 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKD----------PFHASCLPVHIGTLVELNK--ANELFYLSHKLVDLYPS--NPVSWFAVGCYY 100 (330)
T ss_dssp TTCHHHHHHHHHHHHHHC----------TTCTTTHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTT--STHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC----------CCChhhHHHHHHHHHHhhh--HHHHHHHHHHHHHhCcC--CHHHHHHHHHHH
Confidence 378999999999987662 1224456677888888884 55555555555554443 667888899999
Q ss_pred HHcC-CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 81 ANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 81 ~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
...| +.++|...|++.... .+.+...|..+...|...|++++|...|++..+... .+...+..+-..+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHH
Confidence 9999 999999999999863 233567899999999999999999999999887642 346777889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--------CcchhhHHHHHHHHHhhhh
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI--------RMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~li~~l~~~~~ 226 (228)
|.+.+++..+.. ..+..++..+...+...|++++|...+....+..- ......+..+...+...++
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999888653 34578899999999999999999999998887421 2234566666665555444
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=4e-09 Score=82.94 Aligned_cols=210 Identities=10% Similarity=0.018 Sum_probs=145.6
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...++++.+... .....|..+..++.+.|+ ...+...+.+.....+. +..++..+-..+
T Consensus 34 ~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~--~~~~~~~la~~~ 99 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAP----------EREEAWRSLGLTQAENEK--DGLAIIALNHARMLDPK--DIAVHAALAVSH 99 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcC--CHHHHHHHHHHH
Confidence 3778888888888776521 123456677777888774 44444444444443333 566777777778
Q ss_pred HHcCCHHHHHHHHHHHhhcC-----------------------------------------------CCCCCHHhHHHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSF-----------------------------------------------GLTPDIHSYNALI 113 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~-----------------------------------------------~~~p~~~~~~~li 113 (228)
...|+.++|...+++..... ..+.+...+..+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 88888888877777665410 0112456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
..|.+.|++++|...+++..+.. ..+..+|..+...+...|++++|.+.+++..+.. ..+..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 88888899999999888887653 3357788888888888999999998888877643 235678888888888889999
Q ss_pred hHHHHHHHHHHcCCCc-----------chhhHHHHHHHHHhhhh
Q 027083 194 SNDRVEALAKKFDIRM-----------NTENRKNILFNLEYSAS 226 (228)
Q Consensus 194 ~a~~~~~~m~~~g~~~-----------~~~~~~~li~~l~~~~~ 226 (228)
+|...+....+..-.. +...+..+..++...++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 9998888887654332 35566666666655554
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.31 E-value=7e-13 Score=108.92 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...++++... .+|..|..++.+.|+ ..++...+.+ . +|..+|..++.++.
T Consensus 17 ~~ld~A~~fae~~~~~---------------~vWs~La~A~l~~g~--~~eAIdsfik-----a--~D~~~y~~V~~~ae 72 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP---------------AVWSQLAKAQLQKGM--VKEAIDSYIK-----A--DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh---------------HHHHHHHHHHHHcCC--HHHHHHHHHc-----C--CCHHHHHHHHHHHH
Confidence 5566666666666332 357777777777774 2222222211 1 24556677777777
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|...++...+. .+++.+.+.++.+|.+.|++++++++++ .|+..+|+.+-..|...|++++|.
T Consensus 73 ~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred hCCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777755444431 3445666666666666666666665553 245555555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
..|..+ ..|..+..++.+.|+++.|.+.+..+
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 555533 24444445555555555544444444
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.31 E-value=1.9e-10 Score=92.63 Aligned_cols=212 Identities=11% Similarity=0.045 Sum_probs=151.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC--------CHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK--------SVAA 72 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (228)
.|++++|...+++..+.. +....+|..+...|.+.|+ ...+...+.+.....+..+ ....
T Consensus 112 ~g~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 179 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQ----------PNNLKALMALAVSYTNTSH--QQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCHHHHCC----------
T ss_pred CCCHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence 478899999999887762 1124578899999999995 4444444444333222100 1223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 152 (228)
+..+-..+...|++++|...|+++.....-.++..++..+...|.+.|++++|...|++..+.. +.+..+|+.+..+|.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLA 258 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455778889999999999999998742222268899999999999999999999999988764 346889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----------cchhhHHHHHHHH
Q 027083 153 TNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR-----------MNTENRKNILFNL 221 (228)
Q Consensus 153 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------~~~~~~~~li~~l 221 (228)
+.|++++|.+.|++..+.. ..+..++..+...|.+.|++++|...+....+..-. .+...+..+-.++
T Consensus 259 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999999988742 224788999999999999999999999998874321 1355666666666
Q ss_pred Hhhhh
Q 027083 222 EYSAS 226 (228)
Q Consensus 222 ~~~~~ 226 (228)
..+++
T Consensus 338 ~~~g~ 342 (365)
T 4eqf_A 338 SLMDQ 342 (365)
T ss_dssp HHHTC
T ss_pred HHcCc
Confidence 65554
No 19
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=3.6e-09 Score=78.64 Aligned_cols=182 Identities=10% Similarity=-0.062 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
...|..+...+.+.|+ ...+...+.+.....+. +...+..+...+...|+.++|...+++.... .+.+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 81 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQD--YRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHH
Confidence 3467788889999884 55555555554444443 6789999999999999999999999999873 3346778999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 027083 112 LIYAFGKL-KKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE 189 (228)
Q Consensus 112 li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 189 (228)
+...|... |++++|...++++.+.+..| +...+..+..++...|++++|.+.+++..+.. ..+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 99999999999998743334 36788999999999999999999999988643 23478888999999999
Q ss_pred CChhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 190 MDEESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
|+.++|...+....+..-..+...+..+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999998876442344445444333
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.30 E-value=7.8e-10 Score=83.48 Aligned_cols=187 Identities=11% Similarity=-0.027 Sum_probs=144.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...+++..+.. +.....+..+...+.+.|+ ...+...+.+.....+. +..++..+...+.
T Consensus 37 ~~~~~A~~~~~~~l~~~----------~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~ 102 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEEN----------KEDAIPYINFANLLSSVNE--LERALAFYDKALELDSS--AATAYYGAGNVYV 102 (243)
T ss_dssp -----CCTTHHHHHTTC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC----------cccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCc--chHHHHHHHHHHH
Confidence 56666666666665431 1124567788888999884 55555555554444443 7788999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|+.++|...+++..+. ...+...+..+...|.+.|++++|...+++..+.. ..+...+..+...+.+.|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999873 34567788999999999999999999999987764 347888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+.+++..... ..+..++..+...+...|+.++|...+....+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999887653 3457888999999999999999999999988754
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.2e-09 Score=83.61 Aligned_cols=206 Identities=12% Similarity=0.017 Sum_probs=121.1
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhC-hhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKG-FETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
|++++|...++++.+... .....|..+...+.+.| .. ..+...+.+.....+. +...|..+-..+
T Consensus 70 ~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~~~--~~~~~~~l~~~~ 135 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYP----------SNPVSWFAVGCYYLMVGHKN--EHARRYLSKATTLEKT--YGPAWIAYGHSF 135 (330)
T ss_dssp TCHHHHHHHHHHHHHHCT----------TSTHHHHHHHHHHHHSCSCH--HHHHHHHHHHHTTCTT--CTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCc----------CCHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHhCCc--cHHHHHHHHHHH
Confidence 567777777777765421 12345666666666666 32 2222223332222222 445666777777
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
...|+.++|...|++.... .+.+...+..+...|...|++++|...+++..+.. +.+...+..+...+.+.|++++|
T Consensus 136 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 7777777777777777652 12234455556667777777777777777766553 23556677777777777777777
Q ss_pred HHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 161 LSVIDEMVNAG--------FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 161 ~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
.+.+++..+.. ...+..++..+...+...|++++|...+....+..-. +...+..+-..+...+
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMG 284 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhc
Confidence 77776665421 1223456666667777777777777777766665422 3444444444444433
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.2e-09 Score=82.94 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=146.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCC-CCC----HHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPP-YKS----VAAINC 75 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~ 75 (228)
.|++++|...+++..+. . .....|..+..++.+.|+ ...+...+.+.....+. .++ ..+|..
T Consensus 18 ~~~~~~A~~~~~~a~~~---------~--~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWEL---------H--KDITYLNNRAAAEYEKGE--YETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp TTCHHHHHHHHHHHHHH---------S--CCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh---------h--ccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 47899999999998887 3 345678889999999995 33333333332221111 002 578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCC------------------------CCC-CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFG------------------------LTP-DIHSYNALIYAFGKLKKTFEASRVFE 130 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 130 (228)
+-..+...|++++|...|++.... . ..| +...+..+-..+.+.|++++|...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999998862 2 233 34467788888999999999999999
Q ss_pred HHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 131 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+..+.. +.+..+|..+-.++.+.|++++|.+.+++..+.. ..+..+|..+-..+...|+.++|...+....+..
T Consensus 164 ~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 164 EMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 988764 3468889999999999999999999999987653 3357888889999999999999999998887754
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.27 E-value=1.4e-09 Score=85.47 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH---HHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY---SLLV 148 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~---~~li 148 (228)
.+..+-..+...|+.++|.+.+++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+.... ...+
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWV 173 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHH
Confidence 333333445555555555555543 2344455555555555555555555555555432 332211 1122
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhh
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~ 224 (228)
..+...|++++|..+|+++.+. ...+...++.+-.++.+.|++++|...++...+..-. ++..+..++..+...
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~ 247 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHL 247 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 2223335555555555555543 2334555555555555555555555555555543321 344444444443333
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=3.5e-09 Score=80.54 Aligned_cols=185 Identities=10% Similarity=-0.013 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..|..+...+.+.|+. ..+...+.+.....+. +..++..+-..+...|++++|...+++.... ...+...+..+
T Consensus 38 ~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 111 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNT--EQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHTTCT--GGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHH
Confidence 4577788888888853 3333333333333333 6788999999999999999999999999873 23467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
...|.+.|++++|.+.|++..+.+..| +...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 999999999999999999998743345 66788899999999999999999999988653 2357888899999999999
Q ss_pred hhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 192 EESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 192 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
.++|...+....+..- .+...+..+...+...+
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcc
Confidence 9999999999887543 34555555555544433
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=4.6e-09 Score=78.80 Aligned_cols=186 Identities=11% Similarity=-0.035 Sum_probs=138.6
Q ss_pred cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 31 PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 31 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
+...+..+-..+.+.|+ ..++...+.+.....|. +...+..+-..+...|+.++|...|++..+. -+.+...+.
T Consensus 4 ~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~ 77 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGR--YDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYM 77 (217)
T ss_dssp CCHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 34567778888888884 55555555555444443 7778888888888999999999999988763 223456778
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 027083 111 ALIYAFGKL-----------KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179 (228)
Q Consensus 111 ~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 179 (228)
.+-..|.+. |++++|...|++..+... -+...|..+-..+...|++++|.+.|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 888888888 999999999998877532 256778888888899999999999999988776 778888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
..+-..+...|++++|...++...+..-. +...+..+-..+...++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccC
Confidence 88888999999999999999888875432 44555555555544443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.24 E-value=4.1e-09 Score=82.85 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=141.5
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCc-chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSP-FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
|+.++|+..++++... +..|. ...+..+-..+.+.| +..+++..+.+ + .+...+..+...+
T Consensus 79 ~~~~~A~~~l~~ll~~---------~~~P~~~~~~~~la~~~~~~g--~~~~Al~~l~~-----~--~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR---------SVDVTNTTFLLMAASIYFYDQ--NPDAALRTLHQ-----G--DSLECMAMTVQIL 140 (291)
T ss_dssp TTHHHHHHHHHHHHHS---------CCCCSCHHHHHHHHHHHHHTT--CHHHHHHHHTT-----C--CSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhc---------ccCCCCHHHHHHHHHHHHHCC--CHHHHHHHHhC-----C--CCHHHHHHHHHHH
Confidence 4567777777777554 22232 334556778888988 46666666554 2 2788999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSY---NALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 157 (228)
.+.|+.++|...|+++.+. .|+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+-.++.+.|++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999874 3654322 234455556699999999999998873 56889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHHcC-CCcchhhH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES-NDRVEALAKKFD-IRMNTENR 214 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~~g-~~~~~~~~ 214 (228)
++|.+.|++..... .-+..++..+...+...|+.++ +.++++.+.+.. -.|....+
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999977643 2367888889999999999865 678888777644 33344433
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=2.2e-09 Score=80.60 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=135.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+.. +.....+..+-..+.+.|+ ..++...+.+.....|. +...+..+-..+
T Consensus 18 ~g~~~~A~~~~~~al~~~----------p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~--~~~a~~~lg~~~ 83 (217)
T 2pl2_A 18 LGRYDAALTLFERALKEN----------PQDPEALYWLARTQLKLGL--VNPALENGKTLVARTPR--YLGGYMVLSEAY 83 (217)
T ss_dssp TTCHHHHHHHHHHHHTTS----------SSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Confidence 378888988888776552 1224567888899999984 55565556655554554 778898899999
Q ss_pred HHc-----------CCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 81 ANI-----------WDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 81 ~~~-----------~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
... |+.++|...|++..+. .| +...+..+-..|...|++++|...|++..+.. .+...+..+-
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 999 9999999999999873 34 46678888889999999999999999998877 6899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.++...|++++|...|++..+.. .-+...+..+...+.+.|+.++|...++....
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999987642 23567888888999999999999988876543
No 28
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=9.4e-09 Score=73.84 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..|..+...+.+.| +...+...+.+.....+. +..++..+...+...|+.++|...+++..+. .+.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 82 (186)
T 3as5_A 9 VYYRDKGISHAKAG--RYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 35667788888888 466666666665544433 7788999999999999999999999999873 34467788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
...|...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.+++..... ..+..++..+...+...|+.
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH
Confidence 999999999999999999987764 3578889999999999999999999999988653 34578889999999999999
Q ss_pred hhHHHHHHHHHHcC
Q 027083 193 ESNDRVEALAKKFD 206 (228)
Q Consensus 193 ~~a~~~~~~m~~~g 206 (228)
++|...+....+..
T Consensus 161 ~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 161 EEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.19 E-value=5.3e-11 Score=97.82 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
.+.+.++.+|.+.|+++++.++++ .|+..+|+.+-+.|...|.+++|..+|+.+ ..|..+.++
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~ 157 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 157 (449)
T ss_dssp --------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHH
Confidence 344455555555555555444432 134445555555555555555555555433 245555555
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 195 (228)
+.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 55555555555554444 1444555555555555554444
No 30
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.19 E-value=2.1e-08 Score=79.58 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=150.5
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+... .....+..+..++.+.|+ ...+...+.+.....+. +...|..+-..+
T Consensus 16 ~g~~~~A~~~~~~~l~~~p----------~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 81 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDP----------DNYIAYYRRATVFLAMGK--SKAALPDLTKVIALKMD--FTAARLQRGHLL 81 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc----------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCC--cchHHHHHHHHH
Confidence 4889999999999877621 123567888899999884 55555555555544443 678999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTP----DIHSYNAL------------IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
...|+.++|...|++..+. .| +...+..+ ...+...|++++|...+++..+.. +.+...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999863 45 34444444 478999999999999999988764 3478889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
..+...+...|++++|.+.+++..... ..+..++..+...+...|++++|...+....+..-
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 999999999999999999999988653 34678899999999999999999999999887543
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.6e-09 Score=87.28 Aligned_cols=206 Identities=11% Similarity=-0.094 Sum_probs=146.6
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...|+++.+.. |+...|..+..+|.+.|+ ...+...+.+.....|. +..+|..+..++
T Consensus 19 ~g~~~~A~~~~~~al~~~-----------p~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 83 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK-----------EDPVFYSNLSACYVSVGD--LKKVVEMSTKALELKPD--YSKVLLRRASAN 83 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSC--CHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC-----------ccHHHHHhHHHHHHHHhh--HHHHHHHHHHHhccChH--HHHHHHHHHHHH
Confidence 488999999999998873 234578889999999994 55555555555554443 778999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCC-------------------------------------------------------
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPD------------------------------------------------------- 105 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~------------------------------------------------------- 105 (228)
...|+.++|...|+++... +. ++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLN-GD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHS-SS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhc-CC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998763 21 11
Q ss_pred ------------------------HHhHHHHHHHHH---hcCCHHHHHHHHHHHHh-----CCC--------CCcHhhHH
Q 027083 106 ------------------------IHSYNALIYAFG---KLKKTFEASRVFEHLVS-----LGV--------KPNAMSYS 145 (228)
Q Consensus 106 ------------------------~~~~~~li~~~~---~~~~~~~a~~~~~~m~~-----~g~--------~p~~~t~~ 145 (228)
...+......+. +.|++++|..+|+++.+ ..- ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 112222222233 37889999999988876 311 22456788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
.+...+...|++++|.+.+++..... |+..++..+...+...|++++|...+..+.+..-. +...+..+...+...+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88888888999999999998887654 34777778888888888888888888887765432 4445555555554444
Q ss_pred h
Q 027083 226 S 226 (228)
Q Consensus 226 ~ 226 (228)
+
T Consensus 319 ~ 319 (514)
T 2gw1_A 319 N 319 (514)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.16 E-value=1.3e-08 Score=78.17 Aligned_cols=191 Identities=14% Similarity=-0.013 Sum_probs=139.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...++++.+.....+ +....+|..+...+.+.|+ ...+...+.+.....+. +..+|..+-..+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~--~~~~~~~la~~~~ 88 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTD------DERAQLLYERGVLYDSLGL--RALARNDFSQALAIRPD--MPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCH------HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccC------chhHHHHHHHHHHHHHccc--HHHHHHHHHHHHHcCCC--cHHHHHHHHHHHH
Confidence 678899999998876521111 1123567888889999884 55555555555544443 6789999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|...|++.... .+.+...+..+...|.+.|++++|...|++..+. .|+.......+..+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999873 2335778899999999999999999999998775 455555555555666778888888
Q ss_pred HHHHHHHHCC-------------------------------CCC-----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 162 SVIDEMVNAG-------------------------------FAP-----SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 162 ~~~~~m~~~g-------------------------------~~p-----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+++..... ..| +..++..+...+...|+.++|...+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8776544321 111 1467777888888999999999999988876
Q ss_pred C
Q 027083 206 D 206 (228)
Q Consensus 206 g 206 (228)
.
T Consensus 245 ~ 245 (275)
T 1xnf_A 245 N 245 (275)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.15 E-value=7.5e-09 Score=78.00 Aligned_cols=186 Identities=12% Similarity=0.007 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
.+|..+...+.+.|+ ...+...+.+.....+. +...+..+-..+...|+.++|...|++.... ...+...+..+
T Consensus 24 ~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 97 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGD--YEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--HHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence 456677777888774 44444444444333333 6788999999999999999999999999873 33467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
...|.+.|++++|.+.+++..+.. ..+...+..+...+.+.|++++|.+.+++..+.. ..+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999988764 3478889999999999999999999999987643 33678888899999999999
Q ss_pred hhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 193 ESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 193 ~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
++|...+....+..- .+...+..+...+...+++
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENR 209 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCH
Confidence 999999999887653 2456666666666555443
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.14 E-value=1.2e-07 Score=75.25 Aligned_cols=199 Identities=11% Similarity=0.023 Sum_probs=147.8
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+... .....+..+...+.+.|+ ...+...+.+.....+. +..++..+-..+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~la~~~ 198 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCV----------WDAELRELRAECFIKEGE--PRKAISDLKAASKLKSD--NTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCSC--CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC----------CchHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 3778888888888766521 123567888999999994 55555555555544443 778999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-H----hh
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYN------------ALIYAFGKLKKTFEASRVFEHLVSLGVKPN-A----MS 143 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~t 143 (228)
...|+.++|...|++..+. .+.+...+. .+...+.+.|++++|...+++..+.. |+ . ..
T Consensus 199 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 274 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRS 274 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHH
Confidence 9999999999999999873 222333332 22566899999999999999988754 33 2 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc-hhhHHHHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMN-TENRKNILFN 220 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~ 220 (228)
+..+-.++.+.|++++|.+.+++..+.. ..+..++..+-..+...|++++|...+....+.. |+ ......+..+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 5557788999999999999999988752 3367899999999999999999999999998764 43 3444444433
No 35
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.3e-08 Score=68.95 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
.|..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.+.+ ..+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 5666777888888999999999888763 23456778888888888899999999998887654 34667788888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
...|++++|.++++++.... ..+..++..+...+...|+.++|...+..+.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88999999999888877643 2356777888888888899999988888877643
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.13 E-value=7.2e-08 Score=77.19 Aligned_cols=187 Identities=10% Similarity=-0.003 Sum_probs=140.0
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
...+..+...+.+.| +...+...+.+.....+. +..+|..+-.++...|+.++|...|++.... .+.+..++..
T Consensus 64 ~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRRLQEG--DLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHHHHTT--CHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 345778888999988 456666666665554443 7889999999999999999999999999873 2447788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------------------------------------C---cH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVK-----------------------------------------------P---NA 141 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~-----------------------------------------------p---~~ 141 (228)
+...|.+.|++++|...|+++.+.... | +.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 999999999999999999887664311 2 46
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
.++..+...+.+.|++++|.+.+++..... ..+..++..+...+...|++++|...+....+..- .+...+..+...+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777888888888888888888888877542 23467788888888888888888888888777542 2455555555555
Q ss_pred Hhhhh
Q 027083 222 EYSAS 226 (228)
Q Consensus 222 ~~~~~ 226 (228)
...++
T Consensus 296 ~~~g~ 300 (368)
T 1fch_A 296 INLGA 300 (368)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 54444
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.12 E-value=5.1e-08 Score=70.58 Aligned_cols=166 Identities=12% Similarity=0.017 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
...|..|-..|.+.| +...+...+.+.....|- +..++..+-..+...|+.++|...+...... ..-+...+..
T Consensus 5 ~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 356888999999999 466666666665554544 7889999999999999999999999998873 3345667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+-..+...++++.|...+++..+.. +-+...+..+-..+.+.|++++|.+.|++..+.. ..+..+|..+-.++.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 7888999999999999999987764 3467889999999999999999999999988643 2357888899999999999
Q ss_pred hhhHHHHHHHHHHc
Q 027083 192 EESNDRVEALAKKF 205 (228)
Q Consensus 192 ~~~a~~~~~~m~~~ 205 (228)
.++|...++...+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.11 E-value=7.7e-09 Score=81.28 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=123.5
Q ss_pred HHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 027083 42 CSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK 121 (228)
Q Consensus 42 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 121 (228)
+.+.| +...+...+.+.....+. +..++..+-..+...|+.++|...+++.... .+.+..++..+...|.+.|+
T Consensus 148 ~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 148 FAAPN--EYRECRTLLHAALEMNPN--DAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp TTSHH--HHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCC
Confidence 45555 345555555555444443 7789999999999999999999999999873 33457789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcC
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-----------SKETLKKVRRRCVREM 190 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~~ 190 (228)
+++|...|++..+.. +.+..+|..+...+.+.|++++|.+.+++.....-.+ +..+|..+..++...|
T Consensus 222 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 222 PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 999999999987764 3468889999999999999999999999887643221 4788889999999999
Q ss_pred ChhhHHHHHHHH
Q 027083 191 DEESNDRVEALA 202 (228)
Q Consensus 191 ~~~~a~~~~~~m 202 (228)
+.+.|..++...
T Consensus 301 ~~~~A~~~~~~~ 312 (327)
T 3cv0_A 301 RPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHHHH
Confidence 999999887643
No 39
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.11 E-value=4.7e-09 Score=87.78 Aligned_cols=132 Identities=7% Similarity=-0.041 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----HhhHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PN----AMSYS 145 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~t~~ 145 (228)
.++..+...+...|+.++|...+++..+. .+.+...+..+...|.+.|++++|...++++.+.... |+ ...|.
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 34444444555555555555555554432 1123344445555555555555555555554332100 11 22455
Q ss_pred HHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 146 LLVDAHLT---NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 146 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.+...+.+ .|++++|.+.++...... ..+..++..+...+.+.|+.++|...+....+.
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55555555 555555555555544321 123444445555555555555555555555543
No 40
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=5.5e-08 Score=76.73 Aligned_cols=185 Identities=11% Similarity=-0.032 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhC-cchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHH-HHHHHHHHHHH
Q 027083 5 QRAFITLNEFETAYGDSIIDMEEIFS-PFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVA-AINCVILGCAN 82 (228)
Q Consensus 5 ~~A~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~ 82 (228)
++|...+++..+. +.| ....|..+...+.+.|. ...+...+.+.....+. +.. +|..+...+.+
T Consensus 81 ~~A~~~~~rAl~~----------~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 81 DEAANIYERAIST----------LLKKNMLLYFAYADYEESRMK--YEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHTT----------TTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSSSS--CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcccc--CccHHHHHHHHHHHH
Confidence 6676666665542 112 23468888899988884 55555555555543332 333 89999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 83 IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFG-KLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
.|++++|..+|++..+. . .++...|........ ..|+.++|..+|++..+.. .-+...|..++..+.+.|++++|.
T Consensus 147 ~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 147 AEGIKSGRMIFKKARED-A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHCHHHHHHHHHHHHTS-T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999873 2 234444544433322 3699999999999987653 236788999999999999999999
Q ss_pred HHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 162 SVIDEMVNAG-FAP--SKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 162 ~~~~~m~~~g-~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.+|++..... +.| ....|..++....+.|+.+.+..++..+.+..
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999873 566 46788889999999999999999999988754
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=9.3e-09 Score=80.22 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=141.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhc------CCCCCCHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA------EPPYKSVAAIN 74 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 74 (228)
.|++++|...+++..+........ .......++..+...|...|+ ...+...+.+.... ........++.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGH--DHPDVATMLNILALVYRDQNK--YKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCS--SSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 478999999999987753211100 001113467788889999885 33333333322221 11122567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC-----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-cH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSF-----GLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL------GVKP-NA 141 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~ 141 (228)
.+-..+...|+.++|...|++..... +-.| ....+..+-..|.+.|++++|...|++..+. +-.| ..
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 88899999999999999999987621 2223 4557888889999999999999999998664 2123 45
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCC-----------------------------------------------CCC
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAG-----------------------------------------------FAP 174 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------------------------------------------~~p 174 (228)
.++..+...|...|++++|.+.+++..... ..|
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 678899999999999999999999887520 122
Q ss_pred -CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 175 -SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 175 -~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+..++..+...|.+.|+.++|...++...+
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346778888899999999999999988765
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=6e-09 Score=80.00 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=139.0
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhc------CCCCCCHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA------EPPYKSVAAINC 75 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 75 (228)
|++++|+..+++..+........ ..+....++..+...|...|+ ...+...+.+.... ........++..
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGH--DHPDVATMLNILALVYRDQNK--YKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCS--SSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 67778888888776653211100 001124568889999999985 33333222222211 111125678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-cHh
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSF-----G-LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL------GVKP-NAM 142 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~-----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~ 142 (228)
+-..|...|++++|...|++..... . -.....++..+-..|...|++++|...|++..+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999887520 1 1234567888899999999999999999998664 1123 467
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC------C-----------------------------------------CCC-
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNA------G-----------------------------------------FAP- 174 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~------g-----------------------------------------~~p- 174 (228)
++..+-..|.+.|++++|.+.+++..+. + ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7889999999999999999999887752 0 112
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 175 SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 175 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
...++..+...|...|++++|...++...+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245677788889999999999999888765
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=8.5e-08 Score=72.61 Aligned_cols=187 Identities=11% Similarity=-0.029 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCC----HH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF-GLTPD----IH 107 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p~----~~ 107 (228)
..|..+-..+.+.|+ ...+...+.+..... . +..+|..+-.++...|+.++|...+++..... ...|+ ..
T Consensus 6 ~~~~~~g~~~~~~~~--~~~A~~~~~~a~~~~-~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQ--FDEAIEHYNKAWELH-K--DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHS-C--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhh-c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 457788888999884 455544444444333 2 67799999999999999999999999987620 11122 57
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------------------C-CCcHhhHHHHHHHHHccCCHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLG------------------------V-KPNAMSYSLLVDAHLTNRDQKAALS 162 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g------------------------~-~p~~~t~~~li~~~~~~g~~~~a~~ 162 (228)
+|..+-..|.+.|++++|...|++..+.. . ..+...|..+-..+...|++++|.+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999999999999999999988732 1 2245678888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 163 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
.+++..... ..+..++..+...+...|++++|...+....+..-. +...+..+-..+...++
T Consensus 161 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 161 AYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhh
Confidence 999988653 336788999999999999999999999999886532 45666666665555444
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.01 E-value=1.1e-07 Score=80.05 Aligned_cols=149 Identities=14% Similarity=0.026 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...+++..+... ...+|..+...+.+.|+ ...+...+.+.....+. +..+|..+-..+.
T Consensus 257 ~~~~~A~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHP-----------TPNSYIFLALTLADKEN--SQEFFKFFQKAVDLNPE--YPPTYYHRGQMYF 321 (537)
T ss_dssp TCHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHTCCSSC--CHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCC-----------CchHHHHHHHHHHHhcC--HHHHHHHHHHHhccCCC--CHHHHHHHHHHHH
Confidence 455666666666554421 12334445555555553 22222222222222222 4445555555555
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|+.++|...|++..+. . +.+...+..+...|.+.|++++|...+++..+.. ..+...+..+-..+...|++++|.
T Consensus 322 ~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSL-N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH-C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 556666666655555542 1 1223455555555555555655555555554432 223445555555555555555555
Q ss_pred HHHHHHH
Q 027083 162 SVIDEMV 168 (228)
Q Consensus 162 ~~~~~m~ 168 (228)
+.+++..
T Consensus 399 ~~~~~a~ 405 (537)
T 3fp2_A 399 KQYDIAK 405 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.99 E-value=7.6e-07 Score=70.13 Aligned_cols=201 Identities=7% Similarity=-0.069 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHh-------hChh-----cHHHHHHHHhchhhcCCCCCCHHH
Q 027083 5 QRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSR-------KGFE-----TLDSVYFQLENLSRAEPPYKSVAA 72 (228)
Q Consensus 5 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 72 (228)
++|...|++..+.. +.....|..+...+.+ .|+. ....+...+.+......|. +...
T Consensus 33 ~~a~~~~~~al~~~----------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHH
T ss_pred HHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHH
Confidence 45666666665552 1223456666666653 3532 0245555555554422232 7779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-H-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-H-SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
|..+...+...|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+... ++...|......
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~ 177 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 99999999999999999999999986 34543 3 799999999999999999999999987642 344445443333
Q ss_pred H-HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCcc--hhhHHHHHHHH
Q 027083 151 H-LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD-IRMN--TENRKNILFNL 221 (228)
Q Consensus 151 ~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~l 221 (228)
. ...|+.++|.++|+...+.. .-+...|..++..+.+.|+.++|..+++...+.. +.|+ ...+...+..+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2 23699999999999887642 2357888999999999999999999999999974 4553 34555544443
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1e-07 Score=64.42 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=105.1
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
.|..+...+.+.|+ ...+...+.+.....+. +...+..+...+...|+.++|...++++... ...+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCc--HHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHH
Confidence 46778888888884 45555555544443333 6778888999999999999999999999873 244677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 114 YAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
..+.+.|++++|.+.++++.+.. ..+...+..+...+.+.|++++|.+.++++...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999999988764 346788999999999999999999999988753
No 47
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.97 E-value=1.6e-07 Score=67.30 Aligned_cols=152 Identities=11% Similarity=-0.030 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
...|..+-..+...|+.++|...+++.... .+.+...+..+...+.+.|++++|...+++..+.. ..+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456777778888999999999999998763 34567889999999999999999999999987764 347788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
.+...|++++|.+.+++..... ..+...+..+...+...|++++|...+....+..- .+...+..+...+...++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCC
Confidence 9999999999999999987653 34678888889999999999999999999888753 245666666665554444
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.95 E-value=1.8e-07 Score=78.43 Aligned_cols=184 Identities=16% Similarity=0.029 Sum_probs=146.7
Q ss_pred chhHHHHHHHHHhhChhcH-HHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 32 FTSLYPLVVACSRKGFETL-DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
...+..+-..+...|+ . .++...+.+.....+. +...|..+-..|...|++++|...|++..+ ..|+...+.
T Consensus 102 a~~~~~lg~~~~~~g~--~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~ 174 (474)
T 4abn_A 102 AQALMLKGKALNVTPD--YSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQ 174 (474)
T ss_dssp HHHHHHHHHHHTSSSS--CCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHH
T ss_pred HHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHH
Confidence 3467777788888884 4 4444445544444443 678999999999999999999999999986 358888899
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCC
Q 027083 111 ALIYAFGKL---------KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN--------RDQKAALSVIDEMVNAGFA 173 (228)
Q Consensus 111 ~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~ 173 (228)
.+-..|... |++++|...|++..+.. .-+...|..+-.+|... |++++|.+.|++..+. .
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~ 251 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--D 251 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--C
Confidence 999999999 99999999999988764 23688899999999988 9999999999998874 3
Q ss_pred C----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 174 P----SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 174 p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
| +...|..+-.++...|++++|...++...+..-. +...+..+-..+..+++
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSR 307 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 5 7889999999999999999999999998886533 44455555555555544
No 49
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.95 E-value=7.8e-08 Score=80.91 Aligned_cols=193 Identities=12% Similarity=-0.019 Sum_probs=143.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...++++.+......... .....++..+-..+...| +...+...+.+.....+ +..+|..+-..+.
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLR---ENAALALCYTGIFHFLKN--NLLDAQVLLQESINLHP---TPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHH---HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCC---CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhh---HHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCC---CchHHHHHHHHHH
Confidence 356677777776655432211100 000124556666777777 45555555555544443 4678888888899
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++++|...|++.... .+.+..+|..+...|.+.|++++|...|++..+.. ..+...|..+...+...|++++|.
T Consensus 288 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999873 23467789999999999999999999999998764 235788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 162 SVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
+.+++..+.. ..+...+..+...+...|++++|...+..+.+..
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999988753 3346788889999999999999999999987654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.94 E-value=4.5e-07 Score=65.52 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=123.8
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|++++|...|++..+.. +....+|..+..+|.+.|+ ...+...........+. +...+..+-..+.
T Consensus 19 g~~~~A~~~~~~al~~~----------p~~~~~~~~la~~~~~~~~--~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKAD----------PNNVETLLKLGKTYMDIGL--PNDAIESLKKFVVLDTT--SAEAYYILGSANF 84 (184)
T ss_dssp TCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCch--hHHHHHHHHHHHH
Confidence 88999999999987662 1124568889999999994 55555555555544443 6778888888889
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..++.+.+...+.+.... .+-+...+..+-..|.+.|++++|...|++..+.. +.+..+|..+-.+|.+.|++++|.
T Consensus 85 ~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998873 33456788888899999999999999999988764 346788999999999999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 027083 162 SVIDEMVNAGFAPSK 176 (228)
Q Consensus 162 ~~~~~m~~~g~~p~~ 176 (228)
+.|++..+. .|+.
T Consensus 162 ~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHT--THHH
T ss_pred HHHHHHHhC--CccC
Confidence 999988763 4543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.90 E-value=1.1e-06 Score=67.18 Aligned_cols=188 Identities=12% Similarity=-0.024 Sum_probs=138.9
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhc-CCCCCCHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRA-EPPYKSVAAINCVILG 79 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~ 79 (228)
.|++++|...+++..+.. +.....+..+..+|.+.|+ ...+...+.+.... ..+.....+|..+-..
T Consensus 16 ~~~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK----------YNSPYIYNRRAVCYYELAK--YDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT----------CCCSTTHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC----------CCcHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 478999999999987652 1224468888889999995 44444444443331 1222234568888899
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
+...|+.++|...|++..+. .+.+...+..+-..|.+.|++++|...|++..+.. ..+...|..+-..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999873 23356789999999999999999999999987763 3356666666624445569999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---hhhHHHHHHHHHHc
Q 027083 160 ALSVIDEMVNAGFAPS-KETLKKVRRRCVREMD---EESNDRVEALAKKF 205 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~ 205 (228)
|.+.|++..+. .|+ ...+..+...+...|+ .+.|...+....+.
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 99999998864 344 6777777788888887 88888888877764
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.87 E-value=1.9e-07 Score=72.65 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=128.0
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhc------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRA------EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSF----- 100 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----- 100 (228)
..++..+...+...|+ ...+...+.+.... ........++..+-..+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGR--YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3568888999999885 33333333332221 0111256778888899999999999999999887520
Q ss_pred C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 027083 101 G-LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL------GV-KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA-- 170 (228)
Q Consensus 101 ~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-- 170 (228)
+ ......++..+...|...|++++|...|++..+. +- ......+..+-..+...|++++|.+++++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 2234567888999999999999999999988654 22 234567888999999999999999999998754
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 171 ----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 171 ----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+..|+ ..++..+...+...|++++|...+..+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22343 467888888999999999999999888863
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=1.1e-05 Score=61.96 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=125.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHh----hChhcHHHHHHHHhchhhcCCCCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSR----KGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 77 (228)
|++++|...|++..+. .+..++..+-..|.+ .++ ...+...+.+..... +...+..+-
T Consensus 20 ~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~~~~g~~~~~~--~~~A~~~~~~a~~~~----~~~a~~~lg 81 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDL------------KENSGCFNLGVLYYQGQGVEKN--LKKAASFYAKACDLN----YSNGCHLLG 81 (273)
T ss_dssp TCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCcCCC--HHHHHHHHHHHHHCC----CHHHHHHHH
Confidence 6777888888776552 122356667777776 663 444444444433322 556777777
Q ss_pred HHHHH----cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 78 LGCAN----IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK----LKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 78 ~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
..|.. .++.++|...|++.... + +...+..+-..|.+ .+++++|...|++..+.+ +...+..+-.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777 88888888888888773 3 66777777778888 888888888888887765 4566666767
Q ss_pred HHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCC
Q 027083 150 AHLT----NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR----EMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 150 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 207 (228)
.|.. .+++++|.+.|++..+.+ +...+..+-..+.. .++.++|...+....+.+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 7776 788888888888877664 45666777777777 8888888888888777654
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.82 E-value=8.9e-07 Score=77.93 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=136.4
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~ 110 (228)
..+|+.|-..|.+.|+ ..++...+.+.....+- +..+|+.+=..|.+.|+.++|...|++..+- .|+ ...|+
T Consensus 9 a~al~nLG~~~~~~G~--~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGN--IEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 4678999999999994 55555555555554443 7889999999999999999999999998863 454 66899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVRE 189 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~ 189 (228)
.+-.+|.+.|++++|.+.|++..+..- -+...|+.+-..|.+.|++++|++.|++..+. .|+ ...+..+...+...
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 999999999999999999999887642 36788999999999999999999999988763 464 68899999999999
Q ss_pred CChhhHHHHHHHHHH
Q 027083 190 MDEESNDRVEALAKK 204 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~ 204 (228)
|++++|.+.++...+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988877654
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=7.9e-06 Score=62.76 Aligned_cols=179 Identities=9% Similarity=-0.047 Sum_probs=141.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHh----hChhcHHHHHHHHhchhhcCCCCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSR----KGFETLDSVYFQLENLSRAEPPYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 77 (228)
|+.++|...+++..+. + ...++..+-..|.+ .+ +...+...+.+..... +...+..+=
T Consensus 56 ~~~~~A~~~~~~a~~~---------~---~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~----~~~a~~~lg 117 (273)
T 1ouv_A 56 KNLKKAASFYAKACDL---------N---YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK----YAEGCASLG 117 (273)
T ss_dssp CCHHHHHHHHHHHHHT---------T---CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC---------C---CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC----CccHHHHHH
Confidence 6788888888887655 1 33457777788887 67 4455554444443332 567888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 78 LGCAN----IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK----LKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 78 ~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
..|.. .++.++|...|++..+. + +...+..+-..|.+ .+++++|...|++..+.+ +...+..+-.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 190 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGN 190 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 88888 99999999999999884 4 56677778788887 899999999999988764 5677888888
Q ss_pred HHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCC
Q 027083 150 AHLT----NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR----EMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 150 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~ 208 (228)
.|.. .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|...+....+.|..
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888 999999999999988765 36677778888888 89999999999999988753
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.78 E-value=8.3e-07 Score=67.92 Aligned_cols=192 Identities=13% Similarity=0.004 Sum_probs=139.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+. . .. ......+|..+...+.+.|. ...+...+.+.....+. +..+|..+-..+
T Consensus 50 ~~~~~~A~~~~~~a~~~-~--~~----~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~ 118 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFSK-V--NA----TKAKSADFEYYGKILMKKGQ--DSLAIQQYQAAVDRDTT--RLDMYGQIGSYF 118 (272)
T ss_dssp TTCHHHHHHHHHHHHTT-S--CT----TTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTT--CTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc-c--Cc----hhHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcCcc--cHHHHHHHHHHH
Confidence 47889999999888763 1 10 00012347888899999884 55555555555554444 567899999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC---H
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD---Q 157 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---~ 157 (228)
...|++++|...|++.... .+.+...|..+-..+...+++++|...|++..+.. +.+...+..+-..+...|+ .
T Consensus 119 ~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhh
Confidence 9999999999999999863 23345566666624444569999999999988764 2346777778888888887 7
Q ss_pred HHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 158 KAALSVIDEMVNA-GFAPS------KETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 158 ~~a~~~~~~m~~~-g~~p~------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
++|...+++..+. .-.|+ ..+|..+-..+...|+.++|...++...+..
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7788888876643 12233 2577778888999999999999999998865
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.74 E-value=2e-06 Score=72.84 Aligned_cols=167 Identities=11% Similarity=-0.018 Sum_probs=124.2
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS-VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
...|..+...+.+.|. ...+...+.+.....+. + ...|......+.+.|+.+.|..+|++..+.. ..+...|-
T Consensus 321 ~~l~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~ 394 (530)
T 2ooe_A 321 MLLYFAYADYEESRMK--YEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYV 394 (530)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHH
T ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHhCcccc--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHH
Confidence 4568888888888884 55555555555543332 3 3589999999999999999999999998741 11222222
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHH
Q 027083 111 ALIY-AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG-FAPS--KETLKKVRRRC 186 (228)
Q Consensus 111 ~li~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~ 186 (228)
.... .+...|+.++|..+|+...+.. .-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+...
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2221 2346899999999999887653 2367889999999999999999999999988764 3443 56888888888
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 027083 187 VREMDEESNDRVEALAKKF 205 (228)
Q Consensus 187 ~~~~~~~~a~~~~~~m~~~ 205 (228)
...|+.+.+..+...+.+.
T Consensus 474 ~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8899999999998887764
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.74 E-value=2.9e-06 Score=69.20 Aligned_cols=201 Identities=9% Similarity=-0.025 Sum_probs=148.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCA 81 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 81 (228)
|+.++|+..+++..+.. +.....|+.+-.++.+.|+ +..+++..+.+.....+- +...|+.+-..+.
T Consensus 111 g~~~~Al~~~~~al~l~----------P~~~~a~~~~g~~l~~~g~-d~~eAl~~~~~al~l~P~--~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELN----------AANYTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQPK--NYQVWHHRRVLVE 177 (382)
T ss_dssp CCCHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhC----------ccCHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
Confidence 67788888888876652 1224568888888888883 155666666665555554 7889999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc-cCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT-NRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a 160 (228)
..|++++|+..|++.... -.-+...|..+-.++.+.|++++|...|+++.+... -+...|+.+-.++.+ .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999873 233667899999999999999999999999988753 378889999999988 6665776
Q ss_pred -----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 161 -----LSVIDEMVNAGFAP-SKETLKKVRRRCVREM--DEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 161 -----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
++.+++... +.| +...|+.+-..+...| +.+++...+..+ + ....+...+..+...+.
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHH
Confidence 477777665 345 4678888888888877 578888877776 2 22224455555554443
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.71 E-value=2.4e-06 Score=65.31 Aligned_cols=132 Identities=11% Similarity=-0.076 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+..+|..+-..+...|++++|...|++.... .+.+...|..+-..|.+.|++++|...|++..+.. +.+...|..+-
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 5678888899999999999999999999873 23467899999999999999999999999998764 23678899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+.+.|++++|.+.++++.+. .|+.......+..+...|+.++|...+......
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999999999998874 465555555566667779999999998766654
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.70 E-value=7.9e-07 Score=74.53 Aligned_cols=182 Identities=12% Similarity=-0.039 Sum_probs=140.5
Q ss_pred CccH-HHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHH
Q 027083 1 MGDL-QRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79 (228)
Q Consensus 1 ~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 79 (228)
.|++ ++|+..+++..+... .....|..+-.+|.+.|+ ..++...+.+..... | +...+..+-..
T Consensus 115 ~g~~~~~A~~~~~~al~~~p----------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~-p--~~~~~~~lg~~ 179 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEP----------ELVEAWNQLGEVYWKKGD--VTSAHTCFSGALTHC-K--NKVSLQNLSMV 179 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTC-C--CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC-C--CHHHHHHHHHH
Confidence 3677 889988888776621 124578899999999994 555555555544433 2 56788888888
Q ss_pred HHHc---------CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--Cc
Q 027083 80 CANI---------WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL--------KKTFEASRVFEHLVSLGVK--PN 140 (228)
Q Consensus 80 ~~~~---------~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~--p~ 140 (228)
+... |++++|...|++..+. -.-+...|..+-.+|... |++++|...|++..+.... -+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 8888 9999999999999873 233577889999999998 9999999999998875310 37
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEA 200 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 200 (228)
...|..+-.+|...|++++|.+.|++..+.. .-+...+..+-..+...|++++|...+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999987643 2245677888888888888888776443
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.70 E-value=2e-06 Score=75.67 Aligned_cols=152 Identities=12% Similarity=0.069 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
+..+|+.+=..+.+.|++++|...|++..+- .|+ ...|+.+-.+|.+.|++++|...|++..+..- -+...|+.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 5778999999999999999999999998873 454 67899999999999999999999999887642 257889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhh
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSAS 226 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~ 226 (228)
-.+|.+.|++++|++.|++..+. .| +...|+.+-..+.+.|++++|...++...+..-. +...+..+...+...++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 99999999999999999988764 45 4788999999999999999999999999886533 56778888888887777
Q ss_pred c
Q 027083 227 Y 227 (228)
Q Consensus 227 ~ 227 (228)
|
T Consensus 161 ~ 161 (723)
T 4gyw_A 161 W 161 (723)
T ss_dssp C
T ss_pred H
Confidence 6
No 62
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=2.6e-06 Score=56.64 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
...|..+-..+...|++++|...|++..+. ...+...+..+...+.+.|++++|...|+++.+.. ..+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 566777777788888888888888887763 23456677777888888888888888888876653 336677777888
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 027083 150 AHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.+...|++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 888888888888888777654
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.65 E-value=8.5e-07 Score=67.80 Aligned_cols=137 Identities=10% Similarity=-0.005 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSF-----GL-TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL------G 136 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 136 (228)
...++..+-..+...|++++|...+++..... +- .....+++.+-..|...|++++|...|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 56788888899999999999999999987521 12 234568899999999999999999999987654 1
Q ss_pred -CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 137 -VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA------GFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 137 -~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
......++..+-..|...|++++|.+.+++..+. +-.| ...++..+-..+...|++++|...+....+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1234677899999999999999999999988764 2233 3467888889999999999999999888764
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.62 E-value=2e-05 Score=58.77 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNA 111 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 111 (228)
..+...-..+.+.| +...+...+.+.....++ ++...+..+-.++...|+.++|...|++..+. .| +...|..
T Consensus 8 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 8 NQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 45667777888888 455555555555544431 26667777888888999999999999999863 34 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNA-------MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS---KETLKK 181 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ 181 (228)
+-..|.+.|++++|...|++..+... .+. ..|..+=..+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 88999999999999999999877532 234 45777777888899999999999988764 565 466677
Q ss_pred HHHHHHhcCCh---------------------------hhHHHHHHHHHHcC
Q 027083 182 VRRRCVREMDE---------------------------ESNDRVEALAKKFD 206 (228)
Q Consensus 182 li~~~~~~~~~---------------------------~~a~~~~~~m~~~g 206 (228)
+-..+...|+. ++|...++...+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77777777766 77777777777653
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.60 E-value=5.1e-05 Score=64.17 Aligned_cols=169 Identities=7% Similarity=-0.077 Sum_probs=123.3
Q ss_pred chhHHHHHHHHHh-------hChhc-----HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 027083 32 FTSLYPLVVACSR-------KGFET-----LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS 99 (228)
Q Consensus 32 ~~~~~~ll~~~~~-------~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 99 (228)
...|......+.+ .|+.+ ...+...+.+......|. +...|..+...+.+.|++++|..+|++..+.
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 4567666676665 46432 114444555444322232 7889999999999999999999999999873
Q ss_pred CCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH-HHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 100 FGLTPD--IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV-DAHLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 100 ~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
.|+ ...|......+.+.|++++|..+|++..+... .+...|.... -.+...|++++|..+|+...+.. .-+.
T Consensus 351 ---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~ 425 (530)
T 2ooe_A 351 ---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 425 (530)
T ss_dssp ---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred ---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH
Confidence 454 25899999999999999999999999887531 1222222211 12346899999999999877642 2257
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 177 ETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 177 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
..|..++..+.+.|+.+.|..+++.....+
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 889999999999999999999999999874
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.58 E-value=9.4e-06 Score=66.13 Aligned_cols=200 Identities=8% Similarity=-0.056 Sum_probs=143.7
Q ss_pred Ccc-HHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHH
Q 027083 1 MGD-LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG 79 (228)
Q Consensus 1 ~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 79 (228)
.|+ +++|+..+++..+.. +.....|+.+-.++.+.|+ ...++..+.+.....+- +...|..+-.+
T Consensus 144 ~g~d~~eAl~~~~~al~l~----------P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~--~~~a~~~lg~~ 209 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQ----------PKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAK--NYHAWQHRQWV 209 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcc--CHHHHHHHHHH
Confidence 365 889999998887762 1224578888888999885 33344444444444443 88899999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK-LKKTFEA-----SRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~~~~~a-----~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
+...|++++|+..|++..+. -.-+...|+.+-.++.+ .|..++| ...|++..+... -+...|+.+-..+..
T Consensus 210 ~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHc
Confidence 99999999999999999873 22367789999999999 6665777 477888776532 367789988888988
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChhhHHHHHHHH-HHcCCCcch-hhHHHHHHH
Q 027083 154 NR--DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM---------DEESNDRVEALA-KKFDIRMNT-ENRKNILFN 220 (228)
Q Consensus 154 ~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m-~~~g~~~~~-~~~~~li~~ 220 (228)
.| +.++|.+.+.++ ..-..+...+..+...|.+.| ..++|..+++.+ .+ +.|.. ..|..+...
T Consensus 287 ~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp TCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 88 689999999887 223345688888888888864 258888888887 44 33433 344444444
Q ss_pred H
Q 027083 221 L 221 (228)
Q Consensus 221 l 221 (228)
|
T Consensus 363 l 363 (382)
T 2h6f_A 363 L 363 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2.7e-05 Score=57.19 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK 158 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 158 (228)
.+...|++++|...|++.. .|+...|..+-..|.+.|++++|...|++..+.. ..+...|..+-.++...|+++
T Consensus 15 ~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3334444444444444331 2344444444444444444444444444443332 123344444444444444444
Q ss_pred HHHHHHHHHH
Q 027083 159 AALSVIDEMV 168 (228)
Q Consensus 159 ~a~~~~~~m~ 168 (228)
+|.+.|++..
T Consensus 89 ~A~~~~~~al 98 (213)
T 1hh8_A 89 LAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.55 E-value=3.3e-05 Score=57.53 Aligned_cols=133 Identities=13% Similarity=0.033 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+...=..+...|+.++|...|++.... ...++...+..+-.++.+.|++++|...|++..+... -+...|..+-
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 5567777888888999999999999999874 4437777777788999999999999999999987642 3677899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPS-K-------ETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+...|++++|.+.+++..+. .|+ . ..|..+-..+...|++++|...+....+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999998764 343 3 45666677788899999999999998875
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.52 E-value=6.2e-06 Score=64.42 Aligned_cols=193 Identities=12% Similarity=-0.052 Sum_probs=118.3
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhc---hhhcCC-CCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN---LSRAEP-PYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~ll 77 (228)
|++++|...+.+..+......+. .....+|+.+-.+|.+.|+ ...+...+.+ +..... +..-..+++.+-
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN--SVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677777776665543211110 0113468888899999885 3333222222 221111 100145777888
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhcC---CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh------hHHH
Q 027083 78 LGCANI-WDLDRAYQTFEAVGSSF---GLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM------SYSL 146 (228)
Q Consensus 78 ~~~~~~-~~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------t~~~ 146 (228)
..|... |+.++|...|++...-. +-.+. ..+++.+-..|.+.|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 99999999999876520 10011 3568888899999999999999999988764332221 5677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCChhhHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPSK------ETLKKVRRRCV--REMDEESNDRVEALA 202 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~--~~~~~~~a~~~~~~m 202 (228)
+..++...|++++|...+++..+ +.|+. ..+..+..++. ..+++++|...++.+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 77888899999999999987664 23331 23444556554 335566666655443
No 70
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.52 E-value=3.4e-06 Score=68.02 Aligned_cols=200 Identities=13% Similarity=-0.022 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChh------------------cHHHHHHHHhch---
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFE------------------TLDSVYFQLENL--- 60 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~------------------~~~~~~~~~~~~--- 60 (228)
|++++|...+++..+........ .....++..+-..|...|+. ....+...+.+.
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDK----VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67777777777765553211110 00123567777778777740 023332222221
Q ss_pred hhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 61 SRAE-PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 61 ~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
.... .+.....++..+-..+...|+.++|...+++......-.++ ..++..+-..|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 11113457778888889999999999999987642111122 337888889999999999999999987543
Q ss_pred ----CCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 136 ----GVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 136 ----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+-.+ ...++..+-..|...|++++|.+.+++.... +-.+. ..++..+-..+...|++++|...+....+.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1111 1567889999999999999999999887642 21221 567777888899999999999998876653
No 71
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.50 E-value=1.4e-05 Score=57.42 Aligned_cols=164 Identities=9% Similarity=-0.059 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..+..+...+.+.| +...+...+.+.....|. +...+..+-..+...|++++|...+++.... .|+...+..+
T Consensus 7 ~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 79 (176)
T 2r5s_A 7 EQLLKQVSELLQQG--EHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLI 79 (176)
T ss_dssp TTHHHHHHHHHHTT--CHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHH
Confidence 34556677788888 456666666655544443 7788999999999999999999999998763 2344333322
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 027083 113 IYA-FGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREM 190 (228)
Q Consensus 113 i~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~ 190 (228)
... +.+.+....|...+++..+.. +-+...+..+-..+...|++++|.+.|++..+..-.+ +...+..+...+...|
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 111 222223345788888877653 2257889999999999999999999999988765333 3568888999999999
Q ss_pred ChhhHHHHHHHHHH
Q 027083 191 DEESNDRVEALAKK 204 (228)
Q Consensus 191 ~~~~a~~~~~~m~~ 204 (228)
+.++|...++....
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988876543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.48 E-value=1.9e-05 Score=63.82 Aligned_cols=203 Identities=7% Similarity=-0.050 Sum_probs=127.1
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhh---cCC--CCCCHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR---AEP--PYKSVAAINC 75 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 75 (228)
.|++++|...+++..+.....++. .....+|..+-..|...|. ...+...+.+... ... ......+++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDR----IEKAEFFFKMSESYYYMKQ--TYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 378888998888876653221111 0012467788888888885 3333322222221 111 1112456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHhhHHH
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GV-KPNAMSYSL 146 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ 146 (228)
+=..|...|+.++|...|++...- .+-.+ ...+++.+-..|...|++++|...|++..+. +. .....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 778888999999999999887642 11111 1247888888999999999999999987662 22 335677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNA----GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
+-..+.+.|++++|.+.+++.... +-......+..+-..+...|+.+...+......+.+..|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH
Confidence 999999999999999998886642 212222335556666777777433333444444444443
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.48 E-value=4.1e-06 Score=65.38 Aligned_cols=136 Identities=12% Similarity=-0.049 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-c
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSF---GLT-PDIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKP-N 140 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 140 (228)
..++..+-..+...|+.++|...+++..... +.. ....++..+...|.+.|++++|...+++..+. +-.+ .
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4467777788888899999999888875420 111 11337788888889999999999988876542 1111 1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..++..+-..+...|++++|.+.+++.... +-.+ ...++..+-..+...|++++|...+....+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 567788888888999999999888876542 2111 1456777788888899999999988887764
No 74
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=1.6e-05 Score=53.13 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+-..+...|+++.|...|++.... ...+...+..+-..+...|++++|...+++..+.. ..+...+..+-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 4556666777777888888888888887763 23356677777888888888888888888876653 23566777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
..+.+.|++++|.+.+++..... ..+...+..+...+.+.|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888776542 22456666666666665553
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.45 E-value=1.9e-05 Score=67.37 Aligned_cols=134 Identities=8% Similarity=-0.144 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|..+-..+...|+.++|...|++..+. -.-+...+..+-..|.+.|++++|.+.|++..+.. ..+...+..+-
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 98 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLG 98 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4455555555566666666666666665542 12234455555566666666666666666655442 12345555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHHcC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE---MDEESNDRVEALAKKFD 206 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---~~~~~a~~~~~~m~~~g 206 (228)
.++.+.|++++|.+.+++..+.. ..+...+..+...+... |+.++|...++...+.+
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666666666666666555432 12345555555555555 66666666655555543
No 76
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=1.5e-05 Score=68.14 Aligned_cols=154 Identities=12% Similarity=-0.036 Sum_probs=108.1
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|++++|...+++..+... .....|..+-..+.+.|+ ..++...+.+.....+. +...+..+-..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~--~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP----------QDFVAWLMLADAELGMGD--TTAGEMAVQRGLALHPG--HPEAVARLGRVR 67 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTSTT--CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 3788899999888765521 123567888889999884 55555555555444443 678899999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc---CCH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN---RDQ 157 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~ 157 (228)
...|+.++|...+++..+. -..+...+..+-..|.+.|++++|.+.|++..+.. ..+...+..+...+... |+.
T Consensus 68 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH
Confidence 9999999999999999873 23356788999999999999999999999987764 23678889999999999 999
Q ss_pred HHHHHHHHHHHHCC
Q 027083 158 KAALSVIDEMVNAG 171 (228)
Q Consensus 158 ~~a~~~~~~m~~~g 171 (228)
++|.+.+++..+.+
T Consensus 145 ~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 145 DVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987654
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=3e-05 Score=54.32 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
...+..+-..+...|++++|...|++.... .+.+...+..+-..+.+.|++++|...+++..+.. ..+...|..+-.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345666667777889999999999888763 23357778888888889999999999998877654 336778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhhHHHHHHHHH
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLK--KVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
++...|++++|.+.+++.....- .+...+. .....+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999988776431 2334443 33334667788888888776654
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.41 E-value=4.6e-05 Score=59.96 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-----CHHhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCC
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-----DIHSYNALIYA--FGKLK--KTFEASRVFEHLVSLGVKP 139 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~g~~p 139 (228)
+...+-.++..+.+.|+.+.|.+.+++|.+. .| +..+...+..+ ....| ..++|..+|+++... .|
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p 209 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FP 209 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CC
Confidence 4444445555555555555555555555432 23 23333333333 11112 455555555555433 23
Q ss_pred cHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 027083 140 NAMSYSLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 140 ~~~t~~~li~~~~~~g~~~~a~~~~~~m 167 (228)
+..+-..++.++.+.|++++|+++++.+
T Consensus 210 ~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 210 TWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3223333333455555555555555443
No 79
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.41 E-value=3.5e-06 Score=68.41 Aligned_cols=196 Identities=11% Similarity=-0.050 Sum_probs=123.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhh---c-CCCCCCHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR---A-EPPYKSVAAINCV 76 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l 76 (228)
.|++++|...+++..+........ ....|..+...|...|+ ...+...+.+... . ........++..+
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRT------LSAIYSQLGNAYFYLGD--YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHH------HHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccChhH------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 378889999999887763211110 01357778888888885 3333222222111 1 1111245677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKK-----------------TFEASRVFEHLVSL 135 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~ 135 (228)
-..|...|++++|...+++.... .+-.| ...++..+-..|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 78888899999999888876542 01112 24467777788888888 88888887775432
Q ss_pred ----CC-CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 136 ----GV-KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF-APS----KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 136 ----g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+- .....++..+-..+...|++++|.+.+++..+..- .++ ..++..+...+...|++++|...++...+
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 11 11234677777888888888888888877654210 112 23667777788888888888888777665
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.41 E-value=1.9e-05 Score=63.80 Aligned_cols=199 Identities=9% Similarity=-0.020 Sum_probs=132.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHH-HHHHhchhhcCC-CCCCHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSV-YFQLENLSRAEP-PYKSVAAINCVIL 78 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ll~ 78 (228)
.|+.++|...+++..+.....++. ......+++.+-..|...|+.+.+.. +........... +.....+++.+=.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAY---NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTT---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 377888888888877664332220 11113467888899999885332222 222222222111 1112347788888
Q ss_pred HHHHcCCHHHHHHHHHHHhh---cCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHhhHHHHHHH
Q 027083 79 GCANIWDLDRAYQTFEAVGS---SFGL-TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKPNAMSYSLLVDA 150 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~---~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~ 150 (228)
.|...|+.++|...|++... +.+. .....++..+-..|.+.|++++|...+++..+. +-......++.+-..
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999998765 1123 233567888889999999999999999986543 112223346778888
Q ss_pred HHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 151 HLTNRD---QKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 151 ~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+...|+ .++|..++++. +..|+ ...+..+-..|...|+.++|...+....+.
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888898 66666666544 44444 356667788899999999999999887763
No 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.41 E-value=7.5e-06 Score=63.88 Aligned_cols=198 Identities=13% Similarity=-0.044 Sum_probs=119.9
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhc---hhhcCC-CCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLEN---LSRAEP-PYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~ll 77 (228)
|++++|...+++..+....... ......++..+...+...|+ ...+...+.+ ...... +.....++..+-
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 57 HDYAKALEYHHHDLTLARTIGD----QLGEAKASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 5566666666665444211110 00113456667777777774 2233222222 211111 111244677777
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 78 LGCANIWD--------------------LDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 78 ~~~~~~~~--------------------~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
..+...|+ ++.|...+++.... .+-.| ...++..+-..|...|++++|...+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77888888 88888888775431 11112 23467777788888999999998888765
Q ss_pred hC----CC-CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 134 SL----GV-KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 134 ~~----g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
+. +. .....++..+...+...|++++|.+.+++.... +-.+. ..++..+-..+...|++++|...+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 42 10 111337788888888899999999888876532 21111 4567777788888899999998887776
Q ss_pred Hc
Q 027083 204 KF 205 (228)
Q Consensus 204 ~~ 205 (228)
+.
T Consensus 291 ~~ 292 (338)
T 3ro2_A 291 AI 292 (338)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 82
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.41 E-value=7.6e-06 Score=66.41 Aligned_cols=202 Identities=13% Similarity=-0.045 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh----------hc-----HHHHHHHHhchh----h
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF----------ET-----LDSVYFQLENLS----R 62 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~-----~~~~~~~~~~~~----~ 62 (228)
|++++|...+++..+......+ ......++..+-..|...|+ .. ...+...+.+.. .
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGD----RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776555321111 01113456777777777774 00 223322222211 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 027083 63 AEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK 138 (228)
Q Consensus 63 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 138 (228)
...+.....++..+-..+...|+.++|...+++......-.++ ..++..+-..|...|++++|...+++..+....
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1111113457777778888999999999999887652100112 237788888999999999999999886543110
Q ss_pred -----CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 139 -----PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 139 -----p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
....++..+-..+...|++++|.+.+++.... +..+ ...++..+-..+...|+.++|...+....+..-
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 12567888888999999999999998887642 2111 235777788888999999999999888877543
No 83
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=3e-05 Score=51.30 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=86.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
...+..+...+.+.|++++|.+.|+++.+.. ..+..++..+...+.+.|++++|..+++++.... ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999988764 3467889999999999999999999999988653 3467888899999
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 027083 186 CVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g 206 (228)
+...|++++|...+..+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999988764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.38 E-value=0.00013 Score=55.50 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-HHhHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS-VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-IHSYN 110 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~ 110 (228)
..+-.+-..+.+.| +...+...+.+.....|..|. ...+..+-.++...|++++|...|++..+...-.|. ...+.
T Consensus 16 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34556677777878 455555555555554443111 567777888899999999999999999874111222 34566
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCcH-hhH-----------------HHHHHHHHccCCHHHHHHHH
Q 027083 111 ALIYAFGK--------LKKTFEASRVFEHLVSLGVKPNA-MSY-----------------SLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 111 ~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~g~~~~a~~~~ 164 (228)
.+-.++.+ .|++++|...|++..+.. |+. ... ..+-..|.+.|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 67778888 999999999999988753 432 333 44567788999999999999
Q ss_pred HHHHHCCCC-C-CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHHcC
Q 027083 165 DEMVNAGFA-P-SKETLKKVRRRCVRE----------MDEESNDRVEALAKKFD 206 (228)
Q Consensus 165 ~~m~~~g~~-p-~~~t~~~li~~~~~~----------~~~~~a~~~~~~m~~~g 206 (228)
++..+..-. | ....+..+..++... |++++|...+..+.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 998864321 1 245677777778766 88899999999888754
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.38 E-value=8e-06 Score=65.83 Aligned_cols=198 Identities=12% Similarity=-0.079 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhh---c-CCCCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR---A-EPPYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~ll 77 (228)
|++++|...+++.........+ ......++..+...|...|+ ...+...+.+... . ..+.....++..+-
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGD----QLGEAKASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 5666666666665444211110 00112356667777777774 2333222222111 1 11111244677777
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHhhc---CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 78 LGCANIWD--------------------LDRAYQTFEAVGSS---FGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 78 ~~~~~~~~--------------------~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
..+...|+ ++.|...+++...- .+-.|. ..++..+-..|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 78888888 88888888775431 111122 3467777888889999999998888865
Q ss_pred hCCC-CCc----HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 134 SLGV-KPN----AMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 134 ~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
+... .++ ..++..+-..+...|++++|.+.+++.... +-.+. ..++..+-..+...|++++|...+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4310 112 337888888888999999999888876632 21111 4577777888888999999998887776
Q ss_pred Hc
Q 027083 204 KF 205 (228)
Q Consensus 204 ~~ 205 (228)
+.
T Consensus 295 ~~ 296 (406)
T 3sf4_A 295 AI 296 (406)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.38 E-value=8.3e-05 Score=59.97 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=128.0
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchh---hcCCC-C-CCHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS---RAEPP-Y-KSVAAINC 75 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~~~ 75 (228)
.|++++|...+++..+.....++. .....+++.+-..|...|. ...+.....+.. ..... . ....+++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDD----IEKAEFHFKVAEAYYHMKQ--THVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 378888999888876653222111 1112467788888888885 333332222221 11111 1 13557777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhhHHH
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVS-----LGVKPNAMSYSL 146 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 146 (228)
+=..|...|+.++|...|++...- .+-.+ ...+++.+-..|...|++++|...|++..+ .. .....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888999999999999887641 11111 234678888899999999999999998766 33 234778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNA----GFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
+-..+.+.|++++|.+.+++.... +-......+..+-..+...++.+...+......+.+..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChh
Confidence 999999999999999999987753 222223455555556666677333333344444444433
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=2.6e-05 Score=52.41 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|..+-..+...|++++|...|++..+. ...+...+..+-..|...|++++|...+++..+.. ..+...+..+-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 5666777777777788888888888877652 22356677777777777888888888877776643 23566777777
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.++.+.|++++|.+.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777664
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.35 E-value=6.5e-05 Score=58.51 Aligned_cols=163 Identities=6% Similarity=-0.085 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..+..+-..+.+.| +...+...+.+.....|- +...+..+-..+...|+.++|...+++.... .|+.......
T Consensus 118 ~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 118 ELXAQQAMQLMQES--NYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred hhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 34455666666666 344444444544444443 5667777777778888888888888877653 3454433333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 027083 113 IY-AFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA-PSKETLKKVRRRCVREM 190 (228)
Q Consensus 113 i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~ 190 (228)
.. .+.+.+..+.|...+++..+.. ..+...+..+-..+...|++++|.+.|.+..+..-. .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22 3556666777777777766553 235677777777888888888888888877764321 12566777777787778
Q ss_pred ChhhHHHHHHHHH
Q 027083 191 DEESNDRVEALAK 203 (228)
Q Consensus 191 ~~~~a~~~~~~m~ 203 (228)
+.+.+...++...
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777776665543
No 89
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.34 E-value=6.6e-05 Score=69.64 Aligned_cols=143 Identities=12% Similarity=0.074 Sum_probs=93.5
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNA 111 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 111 (228)
..+|..+-.++-+.|+ ..++...+.+. . |...|.-+..+|.+.|++++|.+.+...++. .++....+.
T Consensus 1105 p~vWsqLAKAql~~G~--~kEAIdsYiKA----d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~ 1172 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGM--VKEAIDSYIKA----D---DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETE 1172 (1630)
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHhc----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHH
Confidence 4578888888888884 44554444331 1 6678888999999999999999988876652 244444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+..+|++.+++++.+.+. + .|+...|..+=..|-..|++++|..+|... ..|..+..++.+.|+
T Consensus 1173 LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 777888887777544432 1 345555556666666667777777666652 366666666666666
Q ss_pred hhhHHHHHHHH
Q 027083 192 EESNDRVEALA 202 (228)
Q Consensus 192 ~~~a~~~~~~m 202 (228)
++.|.+.++..
T Consensus 1237 ~q~AIEaarKA 1247 (1630)
T 1xi4_A 1237 YQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHh
Confidence 66666655443
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.34 E-value=9.7e-05 Score=59.22 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=123.9
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhh---cCCCCCCHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSR---AEPPYKSVAAINCVI 77 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll 77 (228)
.|++++|...+++..+........ ..+.....+..+-..+...|+ ...+...+.+... ...+.....++..+-
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLE--QLPMHEFLVRIRAQLLWAWAR--LDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCT--TSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 367778888877766553211100 000012345667778888885 3333333322221 111111345677788
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHhhHHHHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPD--IHSYN----ALIYAFGKLKKTFEASRVFEHLVSLGVKP---NAMSYSLLV 148 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~li 148 (228)
..+...|+.++|...+++.... .-.++ ..... .....+...|++++|...+++.......+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENL-LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8888999999999999987642 11111 11111 23345789999999999999876543221 123567778
Q ss_pred HHHHccCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVN----AGFAPSK-ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
..+...|++++|.+.+++... .|..++. ..+..+-.++...|+.++|...+.....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999988753 2332333 3566667778889999999988877654
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.34 E-value=4.4e-05 Score=59.96 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHHHHHhcc--chhhhhhhhCcchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCC-CCCCHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGD--SIIDMEEIFSPFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEP-PYKSVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll 77 (228)
|++++|..++++.++.... +. ...........|+.....|...|+ ......+........... +..-..+|+.+-
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMK-WKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSS-CSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6889999999988876441 11 000111113457777777877775 222222222222222111 111245788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHhhHHHHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKP-NAMSYSLLV 148 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~li 148 (228)
..|...|++++|...|++...- .|-.+ -..+++.+-..|.+ |++++|...|++.... |-.+ -..+++.+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999876531 12111 14577888888988 9999999999986543 1111 146788899
Q ss_pred HHHHccCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVN----AGFAPSK-ETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
..|.+.|++++|.+.|++... .+..+.. ..+..+..++...|+.+.|...++...
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999998774 2322222 356666677778899999999999887
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=0.00037 Score=54.14 Aligned_cols=165 Identities=10% Similarity=-0.026 Sum_probs=103.4
Q ss_pred HHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----HHhH
Q 027083 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVA----AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----IHSY 109 (228)
Q Consensus 38 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~ 109 (228)
.+..+.+.|. ...+...+.+.....+..|+.. .+..+-..+...++.++|...|++......-.++ ..+|
T Consensus 81 ~i~~~~~~~~--y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKR--YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhh--HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3555666663 4444444444333333222321 2333445555667888888888888762111223 2368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCc-HhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLVS----L-GVKPN-AMSYSLLVDAHLTNRDQKAALSVIDEMVN----AGFAPS-KET 178 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t 178 (228)
+.+-..|...|++++|...|++..+ . +..|. ..+|+.+-..|.+.|++++|.+.+++..+ .+..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8888888888999998888888763 1 12222 33778888888888999998888877653 333344 567
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHH
Q 027083 179 LKKVRRRCVREMD-EESNDRVEALAKK 204 (228)
Q Consensus 179 ~~~li~~~~~~~~-~~~a~~~~~~m~~ 204 (228)
|..+-.++.+.|+ .++|...+.....
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777888884 5888877766554
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.32 E-value=4.6e-05 Score=59.98 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----cHh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGL-TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP-----NAM 142 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~ 142 (228)
+..++..+-..+...|+.++|++++.+.... +- .-+...+-.++..+.+.|+.+.|.+.++.|.+. .| +-.
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 5556667778888999999999999988552 32 235667888899999999999999999999875 56 356
Q ss_pred hHHHHHHH--HHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 143 SYSLLVDA--HLTNR--DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 143 t~~~li~~--~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
+..-|..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666 33334 899999999998754 366445555666888999999999999876653
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.32 E-value=3.8e-05 Score=59.90 Aligned_cols=172 Identities=6% Similarity=-0.075 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCCCC-CH
Q 027083 33 TSLYPLVVACSRKGF-ETLDSVYFQLENLSRAE-PPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS---FGLTP-DI 106 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~ 106 (228)
..|+.....|...|+ ......+.......... .+.....+|+.+-..|...|+.++|...|++...- .|-.+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356667777777775 22222332222222111 11112568899999999999999999999987642 11111 14
Q ss_pred HhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC----CCCc-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----
Q 027083 107 HSYNALIYAFGKL-KKTFEASRVFEHLVSLG----VKPN-AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK---- 176 (228)
Q Consensus 107 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g----~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---- 176 (228)
.+++.+-..|... |++++|...|++..+.. -.+. ..+++.+-..+.+.|++++|.+.|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788888999996 99999999999876531 1111 457889999999999999999999998875432221
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 177 --ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 177 --~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
..|..+..++...|+.+.|...++...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2567777788899999999999988765
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.30 E-value=0.00025 Score=52.86 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhHHHH
Q 027083 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSYNAL 112 (228)
Q Consensus 35 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 112 (228)
+..+...+.+.| +...+...+.+.....|..| ....+..+-.++.+.|++++|...|++..+...-.|.. ..+-.+
T Consensus 7 ~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 445566777777 45555555555554433222 23567778889999999999999999998742112221 123223
Q ss_pred HHHHH------------------hcCCHHHHHHHHHHHHhCCCCCcHh-hH-----------------HHHHHHHHccCC
Q 027083 113 IYAFG------------------KLKKTFEASRVFEHLVSLGVKPNAM-SY-----------------SLLVDAHLTNRD 156 (228)
Q Consensus 113 i~~~~------------------~~~~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~g~ 156 (228)
-.++. ..|+.++|...|++..+. .|+.. .+ -.+-..|.+.|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 33333 357899999999999876 35433 22 234456788999
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 157 QKAALSVIDEMVNAGFAPS----KETLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
+++|...|+++.+.- |+ ...+..+..++.+.|+.++|...+..+...+...
T Consensus 163 ~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999988642 33 2567788899999999999999999888876543
No 96
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.29 E-value=6.7e-05 Score=60.54 Aligned_cols=198 Identities=10% Similarity=-0.053 Sum_probs=130.7
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHH-HHHHhchhhcC-CCCCCHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSV-YFQLENLSRAE-PPYKSVAAINCVIL 78 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ll~ 78 (228)
.|+.++|...+++..+........ ......+++.+-..|...|+.+.+.. +.......... .+.....+++.+=.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLY---SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 377888888888876664322210 00113467888899999885333322 22222222211 11113456777888
Q ss_pred HHHHcCCHHHHHHHHHHHhhc---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCcHhhHHHHHHHH
Q 027083 79 GCANIWDLDRAYQTFEAVGSS---FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG----VKPNAMSYSLLVDAH 151 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~ 151 (228)
.|...|+.++|...|++...- .+......++..+-..|.+.|++++|...+++..+.. -......++.+-..+
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly 310 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY 310 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999987750 0122236678888899999999999999999976542 222344566777777
Q ss_pred HccCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 152 LTNRD---QKAALSVIDEMVNAGFAPSK-ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 152 ~~~g~---~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
...|+ .++|...+++ .+..|+. ..+..+-..|...|+.++|...+....+
T Consensus 311 ~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 311 KETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888 6666666654 4444443 5566677889999999999999888765
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.28 E-value=7.5e-05 Score=56.88 Aligned_cols=158 Identities=10% Similarity=-0.026 Sum_probs=110.2
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCC-CHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYK-SVAAINCVILG 79 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~ 79 (228)
.|++++|...|++..+.....+. ....+..+-.+|.+.|+ ...+...+.+.....|..| ....+..+-.+
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~-------~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEW-------AADAQFYLARAYYQNKE--YLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTT-------HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCcc-------hHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 47899999999998776321110 02456778888999884 5555555555554433222 24556666677
Q ss_pred HHH--------cCCHHHHHHHHHHHhhcCCCCCC-HHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 80 CAN--------IWDLDRAYQTFEAVGSSFGLTPD-IHSY-----------------NALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 80 ~~~--------~~~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+.. .|+.++|...|++..+. .|+ .... -.+-..|.+.|++++|...|++..
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777 89999999999999874 233 2233 344678899999999999999988
Q ss_pred hCCCCC--cHhhHHHHHHHHHcc----------CCHHHHHHHHHHHHHC
Q 027083 134 SLGVKP--NAMSYSLLVDAHLTN----------RDQKAALSVIDEMVNA 170 (228)
Q Consensus 134 ~~g~~p--~~~t~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 170 (228)
+..... ....+..+-.+|... |++++|...+++..+.
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 753211 245677777778765 8899999999998864
No 98
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=0.00011 Score=48.86 Aligned_cols=120 Identities=9% Similarity=-0.022 Sum_probs=96.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
+...+..+-..+...|++++|...|++..+.. ..+...|..+-..+...|++++|.+.+++..... ..+...+..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888889999999999999999987753 3478889999999999999999999999887643 235778888889
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 185 RCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
.+...|+++.|...+....+..-. +...+..+...+...+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 999999999999999998886532 455566666666555543
No 99
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=2.5e-05 Score=52.17 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HhhH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGV--KPN----AMSY 144 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~t~ 144 (228)
..|..+-..+...|+++.|...|++.... .+.+...+..+-..|.+.|++++|...+++..+... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666667777778888888888877663 234566677777777788888888887777655421 111 5667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
..+-.++.+.|++++|.+.|++..+. .|+......+-.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 77777777777788877777776653 345544444433
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.24 E-value=0.00031 Score=51.43 Aligned_cols=128 Identities=8% Similarity=-0.117 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 027083 35 LYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIY 114 (228)
Q Consensus 35 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 114 (228)
+..+-..+.+.| +...+...+.+.. .|+...|..+-..+...|+.++|...|++.... .+.+...|..+-.
T Consensus 9 ~~~~g~~~~~~~--~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 9 LWNEGVLAADKK--DWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 445666777777 4555555555442 237789999999999999999999999998873 2446778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--------------C-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVK--------------P-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
.|.+.|++++|...|++..+.... | +...+..+-.++.+.|++++|.+.|+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998875321 1 23678888899999999999999999888654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.23 E-value=3e-05 Score=54.30 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=73.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
..|+++.|...+..... ..|+ ...+-.+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34566677766666543 2333 2344455567777777777777777766553 22566777777777777777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHH-HHHHHHc
Q 027083 161 LSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRV-EALAKKF 205 (228)
Q Consensus 161 ~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~-~~~m~~~ 205 (228)
...|++..+. .| +...|..+-..+.+.|+.+++... ++...+.
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 7777776653 34 356666677777777776655443 4555543
No 102
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=0.00016 Score=47.18 Aligned_cols=98 Identities=15% Similarity=-0.014 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
...+..+-..+...|++++|...|++.... .+.+...+..+-..+.+.|++++|...+++..+.. ..+...+..+-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 445666666777777888888777777652 22355666777777777777777777777766553 224666777777
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 027083 150 AHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~ 170 (228)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777766643
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.21 E-value=0.00011 Score=64.26 Aligned_cols=178 Identities=13% Similarity=-0.001 Sum_probs=127.5
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
.|+.++|+..+++..+..- .......+.....+..+..++.+.|+ ..++...+.+.....+. +...|..+=.++
T Consensus 404 ~~~~~~A~~~~~~al~~~~--~~~~~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~--~~~a~~~lg~~~ 477 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGAL--DADGVDFSESVELPLMEVRALLDLGD--VAKATRKLDDLAERVGW--RWRLVWYRAVAE 477 (681)
T ss_dssp TCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhcc--cccccccccchhHHHHHHHHHHhcCC--HHHHHHHHHHHhccCcc--hHHHHHHHHHHH
Confidence 3678888888888761100 00000112235568888889999994 55555555555444443 778888888999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
...|++++|...|++..+. .| +...|..+-.+|.+.|++++ ...|++..+... -+...|..+-.++.+.|+.++
T Consensus 478 ~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998873 34 56678888899999999999 999999887642 367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 027083 160 ALSVIDEMVNAGFAPS-KETLKKVRRRCVREMD 191 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~ 191 (228)
|.+.|++..+ +.|+ ...+..+..++...+.
T Consensus 553 A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999986654 4566 4566666666655554
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=0.00012 Score=51.10 Aligned_cols=129 Identities=10% Similarity=-0.058 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..+..+-..+.+.| +...+...+.+.....+. +..++..+-..+...|++++|...+++..+. .+.+...|..+
T Consensus 14 ~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAK--DYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 45677788888888 455555555554444443 6788888999999999999999999998873 23467788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH--HHHHHHHHccCCHHHHHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY--SLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
-..+.+.|++++|...|++..+... .+...+ -.+...+.+.|++++|.+.+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999877542 244444 334444778899999999887654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.20 E-value=0.00033 Score=52.19 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=106.6
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCH-HHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV-AAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~ 80 (228)
|++++|...|+++.+....... ....+..+..+|.+.|+ ...+...+.+.....|..+.. ..+-.+-.++
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~-------~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPY-------SQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTT-------HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 7899999999998876321110 11356778889999884 555555555555444432232 1232222333
Q ss_pred HH------------------cCCHHHHHHHHHHHhhcCCCCCCHH-hH-----------------HHHHHHHHhcCCHHH
Q 027083 81 AN------------------IWDLDRAYQTFEAVGSSFGLTPDIH-SY-----------------NALIYAFGKLKKTFE 124 (228)
Q Consensus 81 ~~------------------~~~~~~a~~~~~~m~~~~~~~p~~~-~~-----------------~~li~~~~~~~~~~~ 124 (228)
.. .|+.++|...|++..+. .|+.. .+ -.+-..|.+.|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 32 57899999999999874 34432 22 234456889999999
Q ss_pred HHHHHHHHHhCCCCCcH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 125 ASRVFEHLVSLGVKPNA----MSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 125 a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
|...|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 166 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 166 VVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999998875 3442 568889999999999999999999887654
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.19 E-value=0.00019 Score=52.93 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHH
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHL 152 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 152 (228)
.+.+-..+...|+.++|...|++..+. -+-+...+..+-..|...|++++|...|++..+.. +-+...|..+-..|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344556677788888888888887763 12345677777778888888888888888877653 225666777766665
Q ss_pred ccCCH--HHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHH
Q 027083 153 TNRDQ--KAALSVIDEMVNAGFAPSKET--LKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRK 215 (228)
Q Consensus 153 ~~g~~--~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 215 (228)
..|.. +.+...++.. ..|+... +...-.++...|+.++|...++...+. .|+.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKL----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHhHHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 55432 3334444333 2344332 222333445567788888888777654 45544443
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=0.00016 Score=48.38 Aligned_cols=102 Identities=11% Similarity=-0.072 Sum_probs=87.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 027083 103 TPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182 (228)
Q Consensus 103 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 182 (228)
..+...+..+-..+.+.|++++|...|++..+.. ..+...+..+-.++...|++++|.+.+++..+.. ..+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4456678888899999999999999999988764 2378889999999999999999999999988643 2357888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 027083 183 RRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-..+.+.|++++|...+....+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 899999999999999999988754
No 108
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=3.7e-05 Score=54.92 Aligned_cols=98 Identities=8% Similarity=0.075 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHhcCCH--HHHHHHHHHHHhCCCCCcHhhHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYA-FGKLKKT--FEASRVFEHLVSLGVKPNAMSYS 145 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~g~~p~~~t~~ 145 (228)
+...|..+-..|...|+.++|...|++..+. ...+...+..+-.. |.+.|++ ++|...|++..+.. ..+...+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4445555555555555555555555555442 11233344444444 4455555 55555555554432 12344455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.+-..+...|++++|...+++..+
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555444
No 109
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.16 E-value=0.00033 Score=54.38 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCCCC--
Q 027083 34 SLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSV----AAINCVILGCANIWDLDRAYQTFEAVGSSF--GLTPD-- 105 (228)
Q Consensus 34 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~-- 105 (228)
.+...+..+...|+ ...+...+.+.....+..++. ..+..+-..+...|+.++|...+++..... ...+.
T Consensus 77 ~l~~~~~~~~~~~~--y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKR--YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhh--HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455666666663 444444333333222221111 223334455667789999999999876421 11122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--cHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVS---L-GVKP--NAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS 175 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~ 175 (228)
..+|+.+-..|...|++++|...|++..+ . +-.+ ...+|+.+-..|.+.|++++|.+.+++..+. +..+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44888888999999999999999998752 2 1111 2258888999999999999999999886532 22222
Q ss_pred -HHHHHHHHHHHHhcCChhhH-HHHHHHHH----HcCCCcchhhHHHHHH
Q 027083 176 -KETLKKVRRRCVREMDEESN-DRVEALAK----KFDIRMNTENRKNILF 219 (228)
Q Consensus 176 -~~t~~~li~~~~~~~~~~~a-~~~~~~m~----~~g~~~~~~~~~~li~ 219 (228)
..+|..+-..+.+.|+.++| ...+.... ..+-..-...+..+|.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 284 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKIS 284 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHH
Confidence 57778888889999999999 66555443 3444444444444443
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.16 E-value=0.00017 Score=48.90 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
.+...=..|.+.|++++|...|++..+. -+.+...|..+-.+|.+.|++++|...|++..+.. ..+...|..+-.++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3444444455555555555555554431 12234445555555555555555555555544432 12344455555555
Q ss_pred HccCCHHHHHHHHHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~ 169 (228)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555554443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.15 E-value=0.0001 Score=52.74 Aligned_cols=150 Identities=8% Similarity=0.008 Sum_probs=103.9
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHH-
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILG- 79 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~- 79 (228)
.|++++|...+++..+.. +.....+..+-..+.+.| +..++...+.+.....+ +...+..+-..
T Consensus 19 ~g~~~~A~~~~~~al~~~----------P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~ 83 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL----------QSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQ---DNSYKSLIAKLE 83 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH----------HTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGC---CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC----------CCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccC---ChHHHHHHHHHH
Confidence 377888888887765542 223456788889999999 46666666666554443 33333222111
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~ 157 (228)
+...++...+...+++..+. .| +...+..+-..+.+.|++++|...|++..+....+ +...+..+...+...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 12222333467888887763 35 47788889999999999999999999998764332 356899999999999999
Q ss_pred HHHHHHHHHHH
Q 027083 158 KAALSVIDEMV 168 (228)
Q Consensus 158 ~~a~~~~~~m~ 168 (228)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99999887654
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.15 E-value=0.00012 Score=56.95 Aligned_cols=131 Identities=6% Similarity=-0.080 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----HhhH
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH----SYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PN----AMSY 144 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~t~ 144 (228)
...+..+...|+.++|..++++........|+.. .+..+...+...+++++|...|++....... ++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999887433445532 3445667778888999999999998874322 23 3369
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVN----A-GFAPSK-ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+.+-..|...|++++|.+.+++..+ . +..|.. .++..+-..|...|++++|...+....+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999998773 2 223332 4778888899999999999998887765
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.15 E-value=0.00019 Score=52.95 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHH
Q 027083 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAF 116 (228)
Q Consensus 38 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 116 (228)
+-.+|.+.| +...+...+.+.....|. +...+..+-..+...|+.++|...|++..+. .| +...|..+-..|
T Consensus 60 lg~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNR--NYDKAYLFYKELLQKAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 555566655 344444444444443333 5566666666666666666666666666552 23 344555555555
Q ss_pred HhcCC--HHHHHHHHHHHHhCCCCCcHh--hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 117 GKLKK--TFEASRVFEHLVSLGVKPNAM--SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 117 ~~~~~--~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
...|. .+.+...++... .|+.. .+..+-.++...|+.++|...|++..+ +.|+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 44432 233344444332 23322 222233334445666666666665554 345544333
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=0.00012 Score=58.29 Aligned_cols=129 Identities=15% Similarity=0.027 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----------------IHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
+...+..+=..+.+.|++++|...|++.... .|+ ...|..+-.+|.+.|++++|...|++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4557777888889999999999999998873 233 478999999999999999999999998
Q ss_pred HhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHH-HHHHHHH
Q 027083 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESND-RVEALAK 203 (228)
Q Consensus 133 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~-~~~~~m~ 203 (228)
.+.. ..+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-.++.+.|+.+++. .++..|.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 347888999999999999999999999988764 34 5678888888888889988884 4555554
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=8.6e-05 Score=48.05 Aligned_cols=95 Identities=15% Similarity=0.008 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA-PSKETLKKVRRRCV 187 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~ 187 (228)
+..+-..+.+.|++++|...|++..+.. ..+...|..+-..+...|++++|.+.+++..+..-. .+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344444444555555555554444332 123444444444455555555555555544432100 02444444444555
Q ss_pred hc-CChhhHHHHHHHHHH
Q 027083 188 RE-MDEESNDRVEALAKK 204 (228)
Q Consensus 188 ~~-~~~~~a~~~~~~m~~ 204 (228)
.. |+.++|.+.+....+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 55 555555555554444
No 116
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=0.00015 Score=48.32 Aligned_cols=115 Identities=9% Similarity=-0.016 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG--FAPS----KETL 179 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~ 179 (228)
...|..+-..+...|++++|...|++..+.. ..+...+..+-..+...|++++|...+++..... ..++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788889999999999999999987764 3477889999999999999999999999887542 1233 6788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 180 KKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
..+-..+...|+++.|...+....+.. |+......+-.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 888899999999999999999998865 455555555444443
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.12 E-value=0.00014 Score=56.67 Aligned_cols=154 Identities=8% Similarity=-0.029 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+-..+...|+.++|...|++.... -+-+...+..+-..|.+.|++++|...+++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 4556666667788999999999999999873 2235667888889999999999999999988665 45554333333
Q ss_pred H-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-cchhhHHHHHHHHHhhhh
Q 027083 149 D-AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR-MNTENRKNILFNLEYSAS 226 (228)
Q Consensus 149 ~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~l~~~~~ 226 (228)
. .+.+.++.+.|.+.+++..... ..+...+..+-..+...|+.++|...+..+.+..-. .+...+..+...+..+++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2 3566777788888888877643 235788888999999999999999999999987543 236678888888777665
Q ss_pred c
Q 027083 227 Y 227 (228)
Q Consensus 227 ~ 227 (228)
+
T Consensus 271 ~ 271 (287)
T 3qou_A 271 G 271 (287)
T ss_dssp T
T ss_pred C
Confidence 4
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.12 E-value=0.00019 Score=48.62 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=83.1
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 027083 102 LTPDI-HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLK 180 (228)
Q Consensus 102 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 180 (228)
+.|+. ..+...=..|.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.+++..+.. ..+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 44543 356677778999999999999999987664 3478888999999999999999999999877643 23567888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 181 KVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 181 ~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.+-.++...|++++|...++...+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 88889999999999999999888854
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=0.00016 Score=49.02 Aligned_cols=98 Identities=9% Similarity=-0.026 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|..+-..+...|++++|...|++.... .+.+...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 6677777788888888888888888887763 23346677888888888888888888888877654 23567788888
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.++...|++++|.+.|++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888877664
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.10 E-value=0.00027 Score=55.44 Aligned_cols=188 Identities=15% Similarity=0.031 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcC-CCCCCHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAE-PPYKSVAAINCVILG 79 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~ 79 (228)
|++++|...+.+..+......+. .....+|+.+...|.+.|+ ......+.....+.... .+..-..+++.+-..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSL----FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666666666655543211110 0113467888888888885 23333333222222111 111124567777777
Q ss_pred HHHcCCHHHHHHHHHHHhhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-HhhHHHHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSS---FGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKPN-AMSYSLLVDA 150 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~ 150 (228)
|.. |++++|...|++...- .+-.+ ...+++.+-..|.+.|++++|...|++..+. +..++ ..++..+..+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 877 9999999999987642 01111 1467888899999999999999999987653 22222 2367777788
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhhHHHH
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPS------KETLKKVRRRCVREMDEESNDRV 198 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~li~~~~~~~~~~~a~~~ 198 (228)
+...|++++|...|++.. . .|+ ......++.++ ..|+.+....+
T Consensus 205 ~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 888899999999999877 3 332 12344555555 56776666554
No 121
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.08 E-value=0.0012 Score=52.69 Aligned_cols=199 Identities=14% Similarity=0.010 Sum_probs=121.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHH-HHHHhchhhc-CCC-CC-CHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSV-YFQLENLSRA-EPP-YK-SVAAINCVI 77 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~-~~~-~~-~~~~~~~ll 77 (228)
|++++|...+++..+.....+.. .....+++.+-..+...|+.+.+.. +......... ..+ .| ....+..+-
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVW----HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 66777777777765542211110 0012235567777888885322222 2222221111 111 01 344566677
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcC-CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-hhHH-----HHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSF-GLTP--DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA-MSYS-----LLV 148 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~-~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~-----~li 148 (228)
..+...|++++|...+++..... ...| ...++..+-..+...|++++|...+++..+....++. ..+. ...
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 78889999999999999876521 1111 2356778888899999999999999987653212211 1222 233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAP---SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
..+...|++++|...+++.......+ ....+..+...+...|+.++|...++....
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44778999999999998876533211 133566777888899999999988887754
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=6.5e-05 Score=48.66 Aligned_cols=100 Identities=10% Similarity=-0.078 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP--NAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ 146 (228)
+...+..+-..+...|+.++|...|++..+. ...+...+..+-..+.+.|++++|...|++..+.. .. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 3345666777788889999999999988763 23456778888888999999999999999887753 22 5778888
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHCC
Q 027083 147 LVDAHLTN-RDQKAALSVIDEMVNAG 171 (228)
Q Consensus 147 li~~~~~~-g~~~~a~~~~~~m~~~g 171 (228)
+-.++.+. |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88899999 99999999998887653
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=8.3e-05 Score=53.92 Aligned_cols=137 Identities=12% Similarity=-0.016 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---cCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGS---SFGLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKP- 139 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p- 139 (228)
...++..+-..+...|++++|...+++... +.+..| ...+++.+-..|...|++++|...+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 677888888889999999999999998765 112222 3456778888999999999999999886543 2122
Q ss_pred -cHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 140 -NAMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 140 -~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
....+..+-..+...|++++|.+.+++.... +..+ -..++..+-..+...|+.++|...+....+.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2456788888899999999999999887632 2111 1234567777888999999999888777654
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.06 E-value=0.00089 Score=62.38 Aligned_cols=134 Identities=14% Similarity=0.077 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+..+|..+=.++.+.|++++|.+.|.+- -|...|.-++.+|.+.|++++|.+.|....+.. +++...+.+.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 4569999999999999999999999543 377788889999999999999999998766543 4544455699
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhhc
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSASY 227 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~~~ 227 (228)
.+|++.+++++..++. + .|+...|..+-..|...|++++|..++... ..|..+..++..+++|
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH
Confidence 9999999988655443 1 457777888889999999999999999985 4788888888776543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.06 E-value=9.9e-05 Score=51.52 Aligned_cols=95 Identities=9% Similarity=-0.091 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
..+..+-..+...|++++|...|++.... -+.+...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34444444555555666666655555442 12244445555555555566666665555554432 1234455555555
Q ss_pred HHccCCHHHHHHHHHHHH
Q 027083 151 HLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~ 168 (228)
|...|++++|.+.|+...
T Consensus 99 ~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555544
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.04 E-value=0.0014 Score=48.46 Aligned_cols=171 Identities=9% Similarity=-0.059 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhhcCCCCCCHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW----DLDRAYQTFEAVGSSFGLTPDIH 107 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~p~~~ 107 (228)
..++..|-..|...+ +...++..+.+..... +...+..+=..|.. + +.++|...|++.... | +..
T Consensus 18 ~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~ 86 (212)
T 3rjv_A 18 RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKS 86 (212)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHH
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHH
Confidence 345667777787777 4555555555544432 45566666666666 6 899999999999773 4 566
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CcHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 027083 108 SYNALIYAFGK----LKKTFEASRVFEHLVSLGVK-PNAMSYSLLVDAHLT----NRDQKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 108 ~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t 178 (228)
.+..|=..|.. .+++++|...|++..+.|.. .++..+..|=..|.. .++.++|.+.|++..+. .++...
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a 164 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYA 164 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHH
Confidence 77777777877 88999999999998877532 126777778777877 78999999999998876 224445
Q ss_pred HHHHHHHHHhc-C-----ChhhHHHHHHHHHHcCCCcchhhHH
Q 027083 179 LKKVRRRCVRE-M-----DEESNDRVEALAKKFDIRMNTENRK 215 (228)
Q Consensus 179 ~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g~~~~~~~~~ 215 (228)
+..|-..|... | +.++|...+....+.|.......+.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666543 3 8999999999999998765554443
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00035 Score=46.76 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
..|..+=..+...|++++|...|++..+. -+.+...|..+-.+|.+.|++++|...|++..+.. ..+...|..+-.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34555556666777777777777777652 22345667777777777777777777777766553 2246667777777
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 027083 151 HLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~ 169 (228)
+...|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777776654
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00051 Score=44.62 Aligned_cols=100 Identities=12% Similarity=-0.020 Sum_probs=84.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
+...+..+...+...|++++|...|++..+.. +.+...+..+-..+...|++++|.+.+++..... ..+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45567888889999999999999999987754 2377888999999999999999999999887653 235788888889
Q ss_pred HHHhcCChhhHHHHHHHHHHcC
Q 027083 185 RCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~g 206 (228)
++...|+.++|...+....+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999887654
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=0.00014 Score=51.14 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+=..+.+.|++++|...|++.... -+-+...|..+-.+|.+.|++++|...|++..+... -++..|..+-
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 4445555556666777777777777777652 123455667777777777777777777777766532 2456677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.+|.+.|++++|.+.|+...+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776653
No 130
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.03 E-value=0.0003 Score=58.07 Aligned_cols=169 Identities=12% Similarity=-0.061 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI-------------------WDLDRAYQT 92 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------------------~~~~~a~~~ 92 (228)
..+++.+...|.+.|. ...+...+.+.....|. +..++..+-.+|... +..+.|...
T Consensus 247 ~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~--~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDE--PDKAIELLKKALEYIPN--NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456677777777774 44444444444443433 555555554444221 224566666
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh--hHHHHHH-HHHccCCHHHHHHHHHHHHH
Q 027083 93 FEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM--SYSLLVD-AHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 93 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~m~~ 169 (228)
|++.... -+.+...+..+-..|.+.|++++|...|++..+....|... .+..+-. .....|+.++|++.+++..+
T Consensus 323 ~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 323 LKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666542 22344567777788888888999988888877654333221 1222211 23466888888887776554
Q ss_pred CC-----------------------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 170 AG-----------------------FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 170 ~g-----------------------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.. -..+..+|..+-..+...|+.++|...++...+.|
T Consensus 401 i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 12245667777777778888888888888877754
No 131
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00078 Score=45.86 Aligned_cols=98 Identities=11% Similarity=-0.078 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+...+..+-..+...|++++|...|++..+ ..|+ ...|..+-..|.+.|++++|...+++..+.. ..+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 667777777888888888888888888875 2455 5677777788888888888888888876653 2356777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
..+-.++...|++++|.+.|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 78888888888888888888877653
No 132
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.01 E-value=0.00031 Score=47.47 Aligned_cols=100 Identities=11% Similarity=-0.026 Sum_probs=86.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
.+...|..+-..+.+.|++++|...|++..+.. ..+...|..+-.++...|++++|...++...... ..+...+..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999987764 3367889999999999999999999999988743 23578888899
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 027083 184 RRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.++...|+++.|...+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=0.00069 Score=46.16 Aligned_cols=100 Identities=9% Similarity=-0.024 Sum_probs=85.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETL 179 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 179 (228)
.+...+..+-..+.+.|++++|...|++..+. .|+ ...|..+-.+|...|++++|.+.+++..... ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35677888889999999999999999998875 466 6888999999999999999999999877642 2257788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 180 KKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
..+-.++...|+.++|...+....+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888889999999999999999988754
No 134
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.99 E-value=0.0048 Score=51.40 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHh
Q 027083 71 AAINCVILGCAN----IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK----LKKTFEASRVFEHLVSLGVKPNAM 142 (228)
Q Consensus 71 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ 142 (228)
..+..+=..|.. .++.++|...|++.... | +...+..+-..|.. .++.++|.+.|++..+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 344444444444 45556666666555542 2 33344444444444 455555555555554432 344
Q ss_pred hHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 027083 143 SYSLLVDAHLT----NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR----EMDEESNDRVEALAKKF 205 (228)
Q Consensus 143 t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~ 205 (228)
.+..|-..|.. .++.++|.+.|++..+.| +...+..+-..|.. .++.++|...+....+.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44444444444 455555555555544433 33334444444433 44455555555444443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.99 E-value=0.00021 Score=49.80 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=74.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
...+..+-..+.+.|++++|...|+...... ..+...|..+-.+|...|++++|.+.|++..... .-+...+..+-.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3456666777888888888888888877654 2367778888888888888888888888877643 2245677777788
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 027083 186 CVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g 206 (228)
+...|++++|...+....+..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888777643
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.98 E-value=0.00039 Score=48.82 Aligned_cols=128 Identities=11% Similarity=-0.033 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 027083 7 AFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDL 86 (228)
Q Consensus 7 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 86 (228)
....+.+.....+.+.....--+.....+..+-..+.+.|+ ..++...+.+.....|. +...|..+=.+|...|+.
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--IEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccH
Confidence 33445555556555555332222235567788888899884 56666666665555554 788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM 142 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 142 (228)
++|...|++..+- . +-+...|..+-.+|.+.|++++|...|+...+. .||..
T Consensus 87 ~~Ai~~~~~al~l-~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFAL-G-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHH-S-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHHhh-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999873 2 234667888889999999999999999998875 46654
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=0.00024 Score=50.04 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+-..+...|++++|...|++.... ..-+...|..+-.+|.+.|++++|...|++..+.. .-+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5667777778888999999999999998763 23367788888889999999999999999887764 23578888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.+|.+.|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999887753
No 138
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.97 E-value=0.00011 Score=51.31 Aligned_cols=117 Identities=11% Similarity=-0.046 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
...+-.+=..|.+.|+.++|.+.|++..+. -+-+...|..+-.+|.+.|++++|...|++..+... -+...|..+-.
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 107 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAE 107 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 334555667888999999999999998873 223567888899999999999999999999887642 25778999999
Q ss_pred HHHccCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 027083 150 AHLTNRDQKAALSV-IDEMVNAGFAP-SKETLKKVRRRCVREMD 191 (228)
Q Consensus 150 ~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~t~~~li~~~~~~~~ 191 (228)
.|.+.|+.++|.+. ++...+ +.| +..+|...-..+.+.|+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 99999998776554 566554 345 45667666666665554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.97 E-value=0.0015 Score=50.67 Aligned_cols=132 Identities=7% Similarity=-0.133 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN--AMSYSLLVD 149 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~ 149 (228)
.+-..-..+...|+.++|.++|+.+... .|+....-.+-..+.+.+++++|+..|+...+.. .|. ...+..+=.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 3444566778999999999999998763 3655444445558899999999999998554321 111 236777778
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPS--KETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
++.+.|++++|++.|++.......|. .......-.++.+.|+.++|..+++.+....-
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 89999999999999998875444365 23455566678889999999999999988653
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.97 E-value=0.00038 Score=50.62 Aligned_cols=134 Identities=12% Similarity=-0.028 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD--------------IHSYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
...+..+-..+...|++++|...|++......-.|+ ...|..+-.+|.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345556667778899999999999998863111221 267888888999999999999999998776
Q ss_pred CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHH-HHHHHHHHcC
Q 027083 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESND-RVEALAKKFD 206 (228)
Q Consensus 136 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~-~~~~~m~~~g 206 (228)
. ..+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-.++...++.+++. ..+..+...|
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 346788889999999999999999999987764 34 4667777777777777666666 4455554443
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.00027 Score=48.63 Aligned_cols=96 Identities=14% Similarity=-0.044 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA 150 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 150 (228)
..+..+-..+...|++++|...|++.... -+.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 34444445566677777777777776652 12345556666667777777777777777766553 2245556666667
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 027083 151 HLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~ 169 (228)
+...|++++|.+.|+....
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766554
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0005 Score=45.97 Aligned_cols=99 Identities=9% Similarity=-0.026 Sum_probs=83.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
...|..+-..+.+.|++++|...|++..+.. ..+...|..+-.++.+.|++++|.+.+++..+.. .-+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788999999999999999988764 3478899999999999999999999999988643 2247788888899
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 027083 186 CVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~g 206 (228)
+...|++++|...+....+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999888754
No 143
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.94 E-value=0.00017 Score=63.12 Aligned_cols=133 Identities=9% Similarity=-0.080 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+-..+...|+.++|...|++..+. -.-+...|..+-.+|.+.|++++|...|++..+... -+...|..+-
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg 508 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALA 508 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 5678888888899999999999999998873 233567888888899999999999999999887642 2677888899
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.++.+.|++++ .+.|++..+.. .-+...|..+-.++.+.|+.++|...++...+..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred HHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 99999999999 99998877643 2256788888899999999999999998776543
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=0.00047 Score=48.52 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=86.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
.+...+..+-..+.+.|++++|...|++..+.. .-+...|..+-.+|.+.|++++|.+.|++..+.. .-+...|..+-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345678888889999999999999999988764 2378889999999999999999999999988653 22478888899
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 027083 184 RRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.++...|++++|...+....+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999888754
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.92 E-value=0.0022 Score=49.70 Aligned_cols=136 Identities=6% Similarity=-0.089 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCc--
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIYAFGKLKKTFEASRVFEHLVSLGV---KPN-- 140 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-- 140 (228)
...+...+..+...|+.++|.+.+++........++. ..+..+...+...|++++|...+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455567788889999999999999887631211211 2234455667888999999999998765321 122
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVN----AGFAP--SKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..+|+.+-..|...|++++|.+.+++..+ .+-.+ ...++..+-..|...|++++|...+....+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45889999999999999999999998762 12112 1258888888999999999999999887654
No 146
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.00086 Score=44.69 Aligned_cols=89 Identities=17% Similarity=0.065 Sum_probs=58.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHHHH
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDI----HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSLLV 148 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li 148 (228)
-..+...|++++|...|++..+. .|+. ..+..+-.+|.+.|++++|...|++..+.. |+ ...+..+-
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 34555677777777777777663 2322 355566667777777777777777766543 32 45566666
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 027083 149 DAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
.++.+.|++++|.+.|++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776653
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.89 E-value=0.00036 Score=47.97 Aligned_cols=98 Identities=13% Similarity=-0.026 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRC 186 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 186 (228)
..+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...|+...... .-+...+..+-.++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345566678899999999999999988764 2477888999999999999999999999988753 23457777888899
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 027083 187 VREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 187 ~~~~~~~~a~~~~~~m~~~g 206 (228)
...|++++|...++...+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.89 E-value=0.00014 Score=51.78 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=100.4
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH-HHccCCH--
Q 027083 81 ANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA-HLTNRDQ-- 157 (228)
Q Consensus 81 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~-- 157 (228)
...|+.++|...+++.... .+.+...|..+-..|...|++++|...|++..+.. ..+...+..+-.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3567888899899887763 23466788889999999999999999999987754 2366777788888 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
++|...+++..... .-+...+..+-..+...|+.++|...+....+..- +......++..+
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~i 158 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS--PRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCccHHHHHHHH
Confidence 99999999888653 22467788888899999999999999999887643 233333444443
No 149
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.89 E-value=0.0077 Score=50.17 Aligned_cols=126 Identities=10% Similarity=0.066 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcH
Q 027083 70 VAAINCVILGCAN----IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK----LKKTFEASRVFEHLVSLGVKPNA 141 (228)
Q Consensus 70 ~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 141 (228)
...+..+-..|.. .++.++|...|++.... + +...+..+-..|.. .++.++|.+.|++..+.| +.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 219 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE 219 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH
Confidence 3344444444444 45666666666665552 2 44455555555554 555666666655555433 33
Q ss_pred hhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 027083 142 MSYSLLVDAHLT----NRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR----EMDEESNDRVEALAKKF 205 (228)
Q Consensus 142 ~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~ 205 (228)
..+..+-..|.. .++.++|.++|+...+.| +...+..+-..+.. .++.++|...+....+.
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 344444444443 455555555555544432 23333333333333 44555555555444443
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.87 E-value=0.0004 Score=46.96 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCc----HhhHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPN----AMSYS 145 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~t~~ 145 (228)
.+..+=..+.+.|++++|...|++..+- -+-+...|+.+-.+|.+.|++++|...|++..+.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3344444555555555555555555441 11233445555555555555555555555543321 0000 12333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
.+=.++...|++++|.+.|++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555554433
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.86 E-value=0.0029 Score=52.09 Aligned_cols=133 Identities=9% Similarity=-0.032 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHh-------------------cCCHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTP-DIHSYNALIYAFGK-------------------LKKTFEASRV 128 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-------------------~~~~~~a~~~ 128 (228)
+..++..+-..|...|+.++|...+++..+. .| +..++..+-..|.. .+..+.|...
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 6677888888888889999999988888763 34 34455555444432 1235667777
Q ss_pred HHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChhhHHHHHHHHHHc
Q 027083 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE--TLKKVRR-RCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 129 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~-~~~~~~~~~~a~~~~~~m~~~ 205 (228)
|+...... ..+..++..+-..+...|++++|.+.|++.......|... .+..+-. .....|+.++|...+....+.
T Consensus 323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77766543 3456678888889999999999999999888765443321 1222221 234678899998888877664
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.85 E-value=0.00022 Score=51.59 Aligned_cols=156 Identities=11% Similarity=-0.032 Sum_probs=101.4
Q ss_pred CccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhcHHHHHHHHhchh---hcC-CCCCCHHHHHHH
Q 027083 1 MGDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFETLDSVYFQLENLS---RAE-PPYKSVAAINCV 76 (228)
Q Consensus 1 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l 76 (228)
.|++++|...++.+.+. +. ....+++.+-..+...|+ ...+...+.+.. ... .+.....+++.+
T Consensus 5 ~g~~~~A~~~~~~~~~~---~~-------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH---PA-------TASGARFMLGYVYAFMDR--FDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp --CHHHHHHHHHHHHTS---TT-------THHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCC---hH-------HHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 37888898855554221 11 113467788888888885 333322222222 111 222245677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc---CCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CcHhhHHH
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSS---FGLTP--DIHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVK-PNAMSYSL 146 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~---~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~t~~~ 146 (228)
-..+...|++++|...+++.... .+-.| ....++.+-..+...|++++|...+++..+. +-. .-..++..
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 78888999999999999986642 12122 2346788888999999999999999886532 211 11334678
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~ 168 (228)
+-..+...|++++|.+.+++..
T Consensus 153 la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 8888899999999999888765
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=0.00024 Score=48.92 Aligned_cols=136 Identities=12% Similarity=-0.077 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-c
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----IHSYNALIYAFGKLKKTFEASRVFEHLVSL----GVKP-N 140 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 140 (228)
..++..+-..+...|++++|...+++......-.++ ..++..+-..|...|++++|...+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346667777788889999999999887652100111 146778888899999999999999886542 1111 1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 141 AMSYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 141 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
...+..+-..+...|++++|.+.+++..+. +..+. ..++..+-..+...|+.++|...+....+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888888999999999988876632 22222 356677778888899999999988876653
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.82 E-value=0.001 Score=44.31 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNA----MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS----KETLKKV 182 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~l 182 (228)
.+-..+.+.|++++|...|++..+.. |+. ..+..+-.++.+.|++++|...|++..+.. |+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 34456778888999998888887653 333 367777788888899999988888877643 33 5666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 027083 183 RRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
-.++...|+.++|...++.+.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778888899999988888887754
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00078 Score=45.48 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCC----HHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA--GFAPS----KETLK 180 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~----~~t~~ 180 (228)
..+..+=..+.+.|++++|...|++..+.. +-+...|+.+-.+|.+.|++++|++.+++..+. ...++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356667778888999999999998887654 235777888888899999999999888887642 12222 24566
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHH
Q 027083 181 KVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKN 216 (228)
Q Consensus 181 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 216 (228)
.+=.++...|++++|...+...... .|++.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6667788889999999888887764 455555444
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.76 E-value=0.0014 Score=52.08 Aligned_cols=131 Identities=12% Similarity=-0.007 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKS-------------VAAINCVILGCANIWDLDRAYQTFEAVGSS 99 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 99 (228)
..|..+-..|.+.|+ ...+...+.+.....+..++ ..+|..+-.++.+.|++++|...|++..+.
T Consensus 148 ~~~~~~g~~~~~~g~--~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGK--YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457778888888884 55555555554444433110 578999999999999999999999999873
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 027083 100 FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA-LSVIDEMV 168 (228)
Q Consensus 100 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a-~~~~~~m~ 168 (228)
-+.+...|..+-.+|.+.|++++|...|++..+.. .-+...+..+-.++.+.|+.+++ ...++.|.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23467788999999999999999999999988764 23677888899999999999888 44566554
No 157
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.69 E-value=0.0044 Score=54.18 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------CCCCC------------HHhHHHHHHHHHhcCCHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSF--------GLTPD------------IHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~~p~------------~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
+...|-..+...-..|+++.|.++|+...... .-.|+ ...|-..++...+.|..+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666667777777888888888888876520 00132 33677777777778888888888
Q ss_pred HHHHHhC-C-CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 129 FEHLVSL-G-VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 129 ~~~m~~~-g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
|+...+. + ..+......+.+.-. ..++++.|..+|+...+. +.-+...|...++.....|+.+.|+.+|+......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8887665 2 223333333333321 234578888888876654 33345556677777777788888888888877654
Q ss_pred C
Q 027083 207 I 207 (228)
Q Consensus 207 ~ 207 (228)
.
T Consensus 535 ~ 535 (679)
T 4e6h_A 535 S 535 (679)
T ss_dssp S
T ss_pred C
Confidence 4
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.66 E-value=0.00015 Score=48.13 Aligned_cols=102 Identities=13% Similarity=0.016 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 83 IWDLDRAYQTFEAVGSSFGL-TP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
.|+.++|...|++..+. +. .| +...+..+-..|.+.|++++|...|++..+... -+...+..+-.++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 46677777777777652 21 13 344666777777788888888888887766542 2466777777777788888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 027083 161 LSVIDEMVNA-GFAPSKETLKKVRRRC 186 (228)
Q Consensus 161 ~~~~~~m~~~-g~~p~~~t~~~li~~~ 186 (228)
.+.+++.... .-.|+...|...+..+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 8877776543 2223333444444443
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.66 E-value=0.0008 Score=45.02 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=56.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
-..+.+.|++++|...|++..+. -+-+...|..+-.++.+.|++++|...|++..+... -+...+..+-.++.+.|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 34555667777777777776652 122455555666666777777777777776655432 245566666666777777
Q ss_pred HHHHHHHHHHHHH
Q 027083 157 QKAALSVIDEMVN 169 (228)
Q Consensus 157 ~~~a~~~~~~m~~ 169 (228)
+++|.+.+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766553
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.63 E-value=0.00023 Score=47.17 Aligned_cols=102 Identities=14% Similarity=-0.056 Sum_probs=75.2
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 027083 118 KLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESN 195 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 195 (228)
..|++++|...|++..+.+ -+-+...|..+-.+|.+.|++++|.+.|++..+.. .-+...+..+-.++...|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4588899999999998764 12356778889999999999999999999988653 22467888888999999999999
Q ss_pred HHHHHHHHHc-CCCcchhhHHHHHHH
Q 027083 196 DRVEALAKKF-DIRMNTENRKNILFN 220 (228)
Q Consensus 196 ~~~~~~m~~~-g~~~~~~~~~~li~~ 220 (228)
...+....+. .-.|+...|...|..
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999887764 334445555544443
No 161
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.62 E-value=0.0032 Score=55.01 Aligned_cols=135 Identities=16% Similarity=0.022 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHhhHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKL-KKTFEASRVFEHLVSLGVKPNAMSYSLL 147 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~l 147 (228)
..+|...+....+.|+++.|+.+|....+. ....+......+.+. .+. ++.+.|.++|+...+. +.-+...|...
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y 510 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKY 510 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHH
Confidence 346888888888889999999999999873 122333333333333 333 5599999999998776 33466677888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAP--SKETLKKVRRRCVREMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 207 (228)
++.....|+.+.|..+|+......-.| ....|...++-=.+.|+.+.+..+...+.+.--
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888888999999999999887654322 346788888888889999999999999987653
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.57 E-value=0.0077 Score=43.53 Aligned_cols=143 Identities=11% Similarity=0.017 Sum_probs=95.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc--------------H
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVK-PN--------------A 141 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~ 141 (228)
.......|+++.+.+.|+.-... .......+..+-..+.+.|++++|...|++..+.... |+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 34445556666666666533221 1113445677778899999999999999998764211 11 2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
..|..+-.+|.+.|++++|...++...... ..+...+..+-.++...|+++.|...+....+..-. +...+..+-.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 788889999999999999999999887652 335788888889999999999999999998876432 344444444444
Q ss_pred Hh
Q 027083 222 EY 223 (228)
Q Consensus 222 ~~ 223 (228)
..
T Consensus 167 ~~ 168 (198)
T 2fbn_A 167 NK 168 (198)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.56 E-value=0.0013 Score=43.89 Aligned_cols=95 Identities=12% Similarity=-0.017 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRC 186 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~ 186 (228)
.+-.+-..+.+.|++++|...|++..+.. .-+...|..+-.++.+.|++++|...|++..+. .| +...+..+-.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34555677889999999999999988764 237888888999999999999999999988764 34 567888888899
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 027083 187 VREMDEESNDRVEALAKKF 205 (228)
Q Consensus 187 ~~~~~~~~a~~~~~~m~~~ 205 (228)
.+.|+.++|...++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888753
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.55 E-value=0.00087 Score=56.11 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=71.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 159 (228)
+.+.|+.++|...|++..+. -.-+...|..+-.+|.+.|++++|...+++..+.. .-+...|..+-.+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34567777777777777652 22246677777777777778888877777776653 2356677777777777778888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCChhhHHHHHH
Q 027083 160 ALSVIDEMVNAGFAPS-KETLKKVRRR--CVREMDEESNDRVEA 200 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~-~~t~~~li~~--~~~~~~~~~a~~~~~ 200 (228)
|.+.+++..+.. |+ ...+..+-.+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 877777766532 21 2233333333 666677777777665
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0051 Score=49.97 Aligned_cols=201 Identities=10% Similarity=-0.135 Sum_probs=125.4
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhh-------hCcchhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHH--
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEI-------FSPFTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAA-- 72 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (228)
|++++|+..+....+............ .....++..|...|.+.|+ ..++...+..........++..+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHccchHHHH
Confidence 778899999988877644333211100 0012347789999999995 33333333322221111112221
Q ss_pred -HHHHHH-HHHHcCCHHHHHHHHHHHhhc---CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CcH
Q 027083 73 -INCVIL-GCANIWDLDRAYQTFEAVGSS---FGLTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVSLGV----K-PNA 141 (228)
Q Consensus 73 -~~~ll~-~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~ 141 (228)
....+. .+...|+.+.+..++.+.... .+..+. ..++..+...|...|++++|..++++....-. + -..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 222222 233568899999888876431 233333 45778889999999999999999998754311 1 235
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 142 MSYSLLVDAHLTNRDQKAALSVIDEMVNA--GFA-P-S--KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 142 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-p-~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+|..++..|...|++++|..+++..... .+. | . ...+..+...+...++++.|...+....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57899999999999999999999876532 222 2 1 24455555667778999999877666554
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.51 E-value=0.0034 Score=48.53 Aligned_cols=96 Identities=8% Similarity=-0.138 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..+..+-..+.+.| +...+...+.+.....+. +...|..+-.++...|++++|...+++..+. -.-+...+..+
T Consensus 5 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 5 QELKEQGNRLFVGR--KYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34555566666666 344444444444443333 5566666666666777777777777766542 22244566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 027083 113 IYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~ 134 (228)
-.+|.+.|++++|...|++..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777766554
No 167
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.50 E-value=0.015 Score=42.74 Aligned_cols=129 Identities=11% Similarity=0.028 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK----KTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
+...+..+=..|...++.++|...|++.... | +...+..|=..|.. + ++++|.+.|++..+.| ++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 5667777778888899999999999999874 4 56667777777777 6 8999999999998765 56677
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 027083 145 SLLVDAHLT----NRDQKAALSVIDEMVNAGFA-PSKETLKKVRRRCVR----EMDEESNDRVEALAKKF 205 (228)
Q Consensus 145 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~ 205 (228)
..|-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .++.++|...+....+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 777777776 88999999999988876532 126777777778877 78999999999999887
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.45 E-value=0.0035 Score=52.06 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD----------------IHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
....|..+=..+.+.|++++|...|++.... .|+ ...|..+-.+|.+.|++++|...|++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456777778888999999999999998763 233 578889999999999999999999998
Q ss_pred HhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHH-HHHHHHHH
Q 027083 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESND-RVEALAKK 204 (228)
Q Consensus 133 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~-~~~~~m~~ 204 (228)
.+.. ..+...|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.++.+++. .++..|..
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8764 236788999999999999999999999988763 45 3466777777787888777666 34554443
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.43 E-value=0.0049 Score=47.60 Aligned_cols=98 Identities=9% Similarity=-0.026 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...+..+-..+...|++++|...|++.... -.-+...|..+-.+|.+.|++++|...+++..+.. .-+...+..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5667778888899999999999999999873 22367788889999999999999999999988764 23677889999
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.++...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.0041 Score=43.41 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC------CC---------CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 70 VAAINCVILGCANIWDLDRAYQTFEAVGSSF------GL---------TP-DIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 70 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~---------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
...+...=..+.+.|++++|...|.+..... .- .| +...|..+-.+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455555667778888888888888776510 00 11 23567777788888888888888888877
Q ss_pred hCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 134 SLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 134 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
+.. ..+...|..+-.+|...|++++|.+.|+..... .|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 654 335777888888888888888888888876653 4553
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.36 E-value=0.003 Score=43.21 Aligned_cols=137 Identities=9% Similarity=-0.052 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhChhcHHHH-HHHHhchhhc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCCCC-CH
Q 027083 33 TSLYPLVVACSRKGFETLDSV-YFQLENLSRA-EPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSS---FGLTP-DI 106 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~ 106 (228)
.++..+-..+...|+.+.+.. +......... ..+.....++..+-..+...|+.++|...+++.... .+-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 356777788888885222222 2222222111 111112247777888888999999999999987642 11111 14
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSL----GVK-PNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
..+..+-..+...|++++|...+++..+. +.. ....++..+-..+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778888999999999999999886543 211 1245678888889999999999999987653
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.0054 Score=49.52 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-------------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSF-------------GLTP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSLG 136 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 136 (228)
..+..+=..+.+.|++++|...|++..+.. ...| +...|+.+-.+|.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346666677888999999999999877510 0122 34678888888999999999999999988754
Q ss_pred CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHH
Q 027083 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 137 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~ 196 (228)
.-+...|..+-.+|.+.|++++|.+.|++..+. .| +...+..+-..+...++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 236778888888999999999999999887764 34 4556666666666656555544
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.33 E-value=0.0084 Score=41.79 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSL--------G---------VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g---------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
...+...=..+.+.|++++|...|++..+. . -..+...|..+-.+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666677889999999999999987654 0 01234678889999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 169 NAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 169 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
... ..+...|..+-.++...|++++|...+....+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 653 3357888889999999999999999999988864
No 174
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0024 Score=41.09 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=34.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
...+..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|.+.+++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344455555555566666666555554432 12445555555555666666666666655543
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.0042 Score=52.18 Aligned_cols=125 Identities=8% Similarity=-0.106 Sum_probs=92.4
Q ss_pred HHHcCCHHHHHHHHHHHhhc--CCC---CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-cHhhHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSS--FGL---TP-DIHSYNALIYAFGKLKKTFEASRVFEHLVSL-----GV-KP-NAMSYSL 146 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~--~~~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~t~~~ 146 (228)
+-..|++++|..++++.... .-+ .| ...+++.|...|...|++++|+.++++...- |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44679999999999876542 012 23 2458999999999999999999999886432 21 13 3567999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVN-----AGF-APSK-ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
|-..|...|++++|+.++++... .|- .|+. .+.+.+-+++...+.+++|+.++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653 232 3443 4445555667777889999999988876
No 176
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.23 E-value=0.048 Score=42.78 Aligned_cols=187 Identities=9% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHH----HhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHH
Q 027083 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC----SRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVI 77 (228)
Q Consensus 3 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 77 (228)
++++++..++.+.... +....+|+.--..+ .+.+. .+..+.+....++....+- |-.+|+---
T Consensus 84 ~~~eeL~~~~~~L~~n----------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk--ny~aW~~R~ 151 (306)
T 3dra_A 84 NLYDELDWCEEIALDN----------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK--NHHVWSYRK 151 (306)
T ss_dssp CHHHHHHHHHHHHHHC----------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHC----------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 6777777777776552 12234455422222 33310 2345555555555554443 888998888
Q ss_pred HHHHHcCCHH--HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 78 LGCANIWDLD--RAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK------TFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 78 ~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
-.....|..+ ++++.++++... . .-|-..|+..-..+.+.+. ++++.+.+++...... -|...|+-+-.
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ 228 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLG 228 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHH
T ss_pred HHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHH
Confidence 8888888887 999999999874 2 3466678777777777776 8899999999887764 48888998888
Q ss_pred HHHccCCH-HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 150 AHLTNRDQ-KAALSVIDEMVNAG--FAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 150 ~~~~~g~~-~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+.+.|+. +.+.++..+..+.+ -..+...+..+...+...|+.++|..+++.+.+
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888874 43555666655432 234778888999999999999999999999865
No 177
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.20 E-value=0.022 Score=38.79 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc----cCCHHH
Q 027083 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT----NRDQKA 159 (228)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~ 159 (228)
++.++|.+.|++..+. | .|+.. |=..|...+.+++|.+.|++..+.| ++..+..|=..|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4677888888888774 5 34433 4455666677888888888887764 55666666666666 788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCC
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVR----EMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~ 208 (228)
|.+.|+...+.| +...+..|-..|.. .++.++|...+....+.|..
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999988888765 56666677777777 78889999998888888764
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.18 E-value=0.074 Score=43.92 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCCCCHH
Q 027083 33 TSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI----WDLDRAYQTFEAVGSSFGLTPDIH 107 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~p~~~ 107 (228)
..+..|-..|.+.|. .+...++..+.+.....++ +...+..+-..|... ++.++|...|++.. . | +..
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g---~~~ 249 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-G---YPA 249 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-G---STH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-C---CHH
Confidence 356666667776662 2345555555554444443 444444444555433 57777777777765 2 2 333
Q ss_pred hHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC-----CHHHHHHHHHHHHHCCCCCCHHHH
Q 027083 108 SYNALIYA-F--GKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR-----DQKAALSVIDEMVNAGFAPSKETL 179 (228)
Q Consensus 108 ~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~ 179 (228)
.+..+=.. | ...+++++|.+.|++..+.| +...+..|=..|. .| ++++|.+.|++.. . -+....
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHH
Confidence 34444333 2 45677788888877777665 4445555555554 34 7777777776554 2 244455
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHHcCC
Q 027083 180 KKVRRRCVR----EMDEESNDRVEALAKKFDI 207 (228)
Q Consensus 180 ~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 207 (228)
..|-..|.. ..+.++|...+....+.|.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 545444444 2367777777777666665
No 179
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.16 E-value=0.021 Score=47.23 Aligned_cols=122 Identities=14% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcHhhH
Q 027083 72 AINCVILGCANIW---DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL----KKTFEASRVFEHLVSLGVKPNAMSY 144 (228)
Q Consensus 72 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~t~ 144 (228)
.+..+-..|...| +.++|...|++.... | .++...+..+-..|... +++++|.+.|+... .| ++..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHH
Confidence 4555555555566 666666666666552 3 33344334444444433 56666666666655 22 22333
Q ss_pred HHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhhHHHHHHHHH
Q 027083 145 SLLVDA-H--LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM-----DEESNDRVEALAK 203 (228)
Q Consensus 145 ~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-----~~~~a~~~~~~m~ 203 (228)
..|-.. + ...++.++|.+.|++..+.| +...+..|-..|. .| +.++|...+....
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333333 2 34666667766666666555 4444444444444 33 6666666666555
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.16 E-value=0.031 Score=39.36 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD-------------IHSYNALIYAFGKLKKTFEASRVFEHLVSL--- 135 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 135 (228)
.+...=..+.+.|++++|...|++..+- .|+ ...|+.+-.++.+.|++++|...+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3444445666788888888888887652 233 227777777888888888888888776653
Q ss_pred --CCCC-cHhhH----HHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 027083 136 --GVKP-NAMSY----SLLVDAHLTNRDQKAALSVIDEMVN-----AGFAPSKETLKKVR 183 (228)
Q Consensus 136 --g~~p-~~~t~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li 183 (228)
.+.| +...| ...=.++...|++++|+..|++..+ .|+.+........+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 1134 34456 6666777777778888777776652 45666555444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.16 E-value=0.012 Score=48.77 Aligned_cols=117 Identities=14% Similarity=0.019 Sum_probs=88.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN--------------AMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
...|..+-..|.+.|++++|...|++..+..-... ...|..+-.+|.+.|++++|...+++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677778889999999999999999876421111 5889999999999999999999999988643
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhh
Q 027083 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224 (228)
Q Consensus 172 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~ 224 (228)
..+...|..+-.+|...|++++|...+....+..-. +...+..+-..+..+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKA 398 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 235788888899999999999999999998875422 334444444444433
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.13 E-value=0.0022 Score=53.60 Aligned_cols=120 Identities=10% Similarity=-0.049 Sum_probs=85.2
Q ss_pred HHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 027083 39 VVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK 118 (228)
Q Consensus 39 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 118 (228)
-..+.+.| +..++...+.+.....+. +..+|..+-.++.+.|+.++|...+++..+. -.-+...|..+-.+|.+
T Consensus 13 g~~~~~~g--~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 13 ANDYFKAK--DYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSTTTTT--CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33445556 455555555554444443 6889999999999999999999999999873 23456788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHH--HHccCCHHHHHHHHH
Q 027083 119 LKKTFEASRVFEHLVSLGVKPNAMSYSLLVDA--HLTNRDQKAALSVID 165 (228)
Q Consensus 119 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~~~~ 165 (228)
.|++++|.+.|++..+... -+...+..+-.+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999877532 234455555555 788899999999887
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.023 Score=46.06 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH---HhHHHHHH-HHHhcCCHHHHHHHHHHHHh----CCCCCc-Hh
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI---HSYNALIY-AFGKLKKTFEASRVFEHLVS----LGVKPN-AM 142 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~-~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ 142 (228)
.+..+...|...|++++|.+.+.+.....+-.++. ......+. .+...|+.+.|..+++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778899999999999999999876521222222 22233333 34556889999999887643 233333 56
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNA----GFAPS-KETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
++..+...+...|++++|..++++.... +-+|. ..++..+.+.|...|++++|..++.....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 7888999999999999999999887632 22232 46788888999999999999999887765
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.09 E-value=0.046 Score=42.33 Aligned_cols=137 Identities=12% Similarity=-0.009 Sum_probs=94.1
Q ss_pred HHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCC--HHhHHHHHH
Q 027083 37 PLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPD--IHSYNALIY 114 (228)
Q Consensus 37 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~ 114 (228)
.....+...| +..++...+.......+ +....-.+-..+.+.+++++|+..|+...+. . .|. ...+..+=.
T Consensus 107 ayA~~L~~~g--~y~eA~~~l~~~~~~~p---~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 107 GFAACEAAQG--NYADAMEALEAAPVAGS---EHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHT--CHHHHHHHHTSSCCTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHH
Confidence 4566777777 46666666665544333 3324444445777899999999999866542 1 221 235666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 027083 115 AFGKLKKTFEASRVFEHLVSLGVKPN--AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKV 182 (228)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 182 (228)
++.+.|++++|.+.|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 89999999999999999875433253 335666677788999999999999999874 4554444444
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.06 E-value=0.011 Score=36.40 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
.+..+-..+...|++++|...|++.... .+.+...+..+-..|.+.|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444444555555555555554431 112333444444455555555555555554443
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.05 E-value=0.012 Score=38.33 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 89 AYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 89 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
+...|++..+. -+.+...+..+-..|.+.|++++|...|++..+.. ..+...|..+-.++...|++++|...|++..
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555441 22345566666666777777777777777665543 2245566666666777777777777666654
Q ss_pred H
Q 027083 169 N 169 (228)
Q Consensus 169 ~ 169 (228)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.04 E-value=0.021 Score=46.03 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSL---------------GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
.+..+-..+.+.|++++|...|++..+. --.-+...|+.+-.+|.+.|++++|.+.+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 3666777899999999999999987751 11235678889999999999999999999988864
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 173 AP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 173 ~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
.| +...|..+-.++...|++++|...++...+..-. +...+..+-..+..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQK 353 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34 5788888889999999999999999998876432 34444444444433
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.04 E-value=0.0081 Score=39.19 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 027083 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAK 203 (228)
Q Consensus 124 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 203 (228)
.|...|++..+.. ..+...+..+-..|...|++++|...|++..... ..+...|..+-.++...|+.++|...+....
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788777654 3467889999999999999999999999988643 2346788888899999999999999999887
Q ss_pred HcCC-CcchhhHHHHHHHHHhh
Q 027083 204 KFDI-RMNTENRKNILFNLEYS 224 (228)
Q Consensus 204 ~~g~-~~~~~~~~~li~~l~~~ 224 (228)
+..- ..+......+...+..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHh
Confidence 6432 23444445554444443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.02 E-value=0.0031 Score=50.16 Aligned_cols=129 Identities=13% Similarity=-0.038 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH------------------SYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
..+..+=..+.+.|++++|...|++.... .|+.. .|+.+-.+|.+.|++++|...+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555556666789999999999987652 35443 7888889999999999999999998
Q ss_pred HhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHhcCChhhHHHHHHHHHHc
Q 027083 133 VSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK-ETLKKVRRR-CVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 133 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~-~~~~~~~~~a~~~~~~m~~~ 205 (228)
.+.. ..+...|..+-.+|...|++++|.+.|++..+ +.|+. ..+..+-.. ....+..+.+..++..|.+.
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7754 23678899999999999999999999987664 34543 334433333 22345667777777777643
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0036 Score=40.22 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 140 (228)
+...+..+-..+...|++++|...|++..+. .+.+...+..+-.+|.+.|++++|...|++..+. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 4567777888888999999999999998873 2346778888889999999999999999998865 454
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.97 E-value=0.018 Score=35.32 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
...+..+-..+.+.|++++|...|++..+.. ..+...+..+-.++.+.|++++|.+.+++..... .-+...+..+-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4566677778888888888888888876653 2356777788888888888888888888776532 1234444444444
Q ss_pred H
Q 027083 186 C 186 (228)
Q Consensus 186 ~ 186 (228)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.84 E-value=0.026 Score=35.91 Aligned_cols=62 Identities=18% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
...+..+-..|.+.|++++|...|++..+... -+...|..+-.+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444555555555555555555555544421 134455555555556666666655555443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.60 E-value=0.017 Score=48.48 Aligned_cols=101 Identities=5% Similarity=-0.097 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSS----FG-LTPD-IHSYNALIYAFGKLKKTFEASRVFEHLVS-----LGV 137 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~ 137 (228)
...+++.|-..|...|++++|..++++...- .| -.|+ ..+++.|-..|...|++++|+.++++... .|-
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999998886531 12 2344 44799999999999999999999987643 232
Q ss_pred C-Cc-HhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 138 K-PN-AMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 138 ~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
. |+ ..+.+.+-.++...|..++|+.+++.+++
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22 34456667777788999999999999875
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.49 E-value=0.12 Score=36.27 Aligned_cols=111 Identities=9% Similarity=-0.132 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------c-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----C
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKP------N-----AMSYSLLVDAHLTNRDQKAALSVIDEMVNA-----G 171 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 171 (228)
.+...=..+.+.|++++|...|++..+..... + ...|+.+-.++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34555567888999999999999987653220 2 238999999999999999999999987763 2
Q ss_pred CCCCH-HHH----HHHHHHHHhcCChhhHHHHHHHHHH-----cCCCcchhhHHHHH
Q 027083 172 FAPSK-ETL----KKVRRRCVREMDEESNDRVEALAKK-----FDIRMNTENRKNIL 218 (228)
Q Consensus 172 ~~p~~-~t~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~li 218 (228)
+.||. ..| ...=.++...|++++|...++...+ .|+.+........|
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 37764 566 6777889999999999999998876 46666666655554
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.031 Score=46.05 Aligned_cols=93 Identities=13% Similarity=-0.046 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---CCC----cHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CC-CCCC-HH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLG---VKP----NAMSYSLLVDAHLTNRDQKAALSVIDEMVN-----AG-FAPS-KE 177 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g---~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~-~~ 177 (228)
.+..+.+.|++++|+.++++..+.. ..| ...+++.|...|...|++++|+.++++... .| -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667889999999999886531 112 356789999999999999999999887663 22 3454 37
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 178 TLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 178 t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+++.|-..|...|+.++|+.++....+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788888899999999999988776664
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.30 E-value=0.022 Score=45.16 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=78.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh------------------hHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 107 HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM------------------SYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 107 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
..+..+-..+.+.|++++|...|++..+. .|+.. .|+.+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677888999999999999997664 35543 78889999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 169 NAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 169 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
... .-+...|..+-.++...|++++|...+....+.
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 643 236788888999999999999999999887654
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.26 E-value=0.029 Score=46.32 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=67.3
Q ss_pred hcCCHHHHHHHHHHHHhC---CCC---C-cHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHH
Q 027083 118 KLKKTFEASRVFEHLVSL---GVK---P-NAMSYSLLVDAHLTNRDQKAALSVIDEMVN-----AG-FAPSK-ETLKKVR 183 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~---g~~---p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~~-~t~~~li 183 (228)
..|++++|+.++++..+. -+- | ...+++.|...|...|++++|+.++++... .| -.|+. .+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999886442 111 2 257799999999999999999999988663 23 34554 7788899
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 027083 184 RRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~ 204 (228)
..|...|+.++|+.+++...+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999998887765
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.20 E-value=0.046 Score=34.69 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
+...+..+-..+...|+.++|...|++..+. . +-+...|..+-.+|.+.|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-D-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888999999999999999998874 2 23456788888999999999999999998754
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.10 E-value=0.045 Score=45.09 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-cHh
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSF--GLTP----DIHSYNALIYAFGKLKKTFEASRVFEHLVSL-----G-VKP-NAM 142 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~ 142 (228)
.+..+...|+.++|..++++..... -+.| ...+++.+...|...|++++|+.++++...- | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556667899999999999886421 1222 2458999999999999999999999976432 2 123 356
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
+++.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 69999999999999999999988765
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.09 E-value=0.23 Score=41.54 Aligned_cols=124 Identities=9% Similarity=-0.039 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 71 AAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYN--ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
..|-..+....+.++++.|..+|+.. ...+ ++...|- +.+...+ .++.+.|..+|+...+.- .-++..|...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45666666666778899999999999 4222 2333443 3333332 236999999999987652 12345567777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
+-..+.|+.+.|..+|+... .....|...++-=...|+.+.+..+++...+
T Consensus 362 d~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788899999999999863 2577888888777778999999988777764
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.93 E-value=0.077 Score=43.77 Aligned_cols=86 Identities=7% Similarity=-0.066 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHhhc--CCCC---CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCC-cHhhHHHHHH
Q 027083 83 IWDLDRAYQTFEAVGSS--FGLT---PD-IHSYNALIYAFGKLKKTFEASRVFEHLVS-----LG-VKP-NAMSYSLLVD 149 (228)
Q Consensus 83 ~~~~~~a~~~~~~m~~~--~~~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p-~~~t~~~li~ 149 (228)
.|++++|..++++.... .-+- |+ ..+++.|..+|...|++++|+.++++... .| -.| ...+++.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46789999998876541 0222 23 46899999999999999999999998643 23 123 3566999999
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 027083 150 AHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~ 168 (228)
.|...|+.++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998765
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.81 E-value=0.084 Score=37.08 Aligned_cols=113 Identities=16% Similarity=0.048 Sum_probs=71.7
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK----------TFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
+.+.+++|...++..... -+-+...|+.+=.++.+.++ +++|...|++..+... -+...|+.+=.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 445667777777777653 12245566656566666554 4588888888776542 2556777777777
Q ss_pred Hcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 152 LTN-----------RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 152 ~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
... |++++|.+.|++..+ +.|+...|...+... +++-+++-.+.+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 765 478888888887776 467777776666653 3345555554443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.39 E-value=0.13 Score=31.97 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 79 GCANIWDLDRAYQTFEAVGSSFGLTPDIH-SYNALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 79 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
.+...|++++|...|++..+. ...+.. .+..+-.+|.+.|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666666666666542 112333 5555555666666666666666665544
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.12 E-value=0.27 Score=30.47 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAM-SYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
-..+.+.|++++|...|++..+.. ..+.. .|..+-.++...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999987763 22556 78888888999999999999999887643
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.11 E-value=0.89 Score=35.50 Aligned_cols=168 Identities=11% Similarity=0.012 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHhhcCCCCC
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGC----ANI---WDLDRAYQTFEAVGSSFGLTP 104 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~p 104 (228)
...||.--..+...|.....+.+..........|- +..+|+.--..+ ... +++++++.+++.+... -+-
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pk 142 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPK 142 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCC
Confidence 34566655555554412456666666655554544 666777665555 555 7899999999999874 344
Q ss_pred CHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC------HHHHHHHHHHHHHCCCCCCH
Q 027083 105 DIHSYNALIYAFGKLKKTF--EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~ 176 (228)
|-..|+.---.+.+.|.++ ++...++.+.+.... |-..|+---....+.|. ++++++.++++.... .-|.
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~ 220 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNP 220 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCH
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCc
Confidence 6778888888888888888 999999999887654 78888877777777666 888888888877643 3478
Q ss_pred HHHHHHHHHHHhcCC-hhhHHHHHHHHHHc
Q 027083 177 ETLKKVRRRCVREMD-EESNDRVEALAKKF 205 (228)
Q Consensus 177 ~t~~~li~~~~~~~~-~~~a~~~~~~m~~~ 205 (228)
..|+-+-..+.+.|. .+.+..+...+.+.
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 888888777777766 34455555555543
No 206
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.70 E-value=0.48 Score=30.39 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 156 DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 156 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
+.-+..+-++.+....+.|+.....+.+++|.|.+++..|.++++-++.+- .....+|..++.-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 334444455555555556666666666666666666666666655544321 11234455555443
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.59 E-value=1.2 Score=39.03 Aligned_cols=47 Identities=15% Similarity=-0.060 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 80 CANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 80 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
....|+++.|.++.+.+ .+...|..+-+.+.+.++++.|++.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34556666666653322 244566666666666666666666666543
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.26 E-value=2.3 Score=36.28 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=94.6
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW--DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK-KTFEAS 126 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~ 126 (228)
..+++..+.+.....+- +..+|+.---.+.+.+ ++++++..++++.+. -.-|...|+..--.+.+.| ..+++.
T Consensus 89 ~~~eL~~~~~~l~~~pK--~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHH
Confidence 45555555555544443 7788888777777888 779999999998874 2336667888777788888 788888
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHcc--------------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTN--------------RDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMD 191 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~ 191 (228)
+.++++.+.... |...|+-.-..+.+. +.++++.+.+++.... .| |...|.-.-..+.+.+.
T Consensus 165 ~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 888888877643 777787776666552 4567788888776653 34 56777766666666555
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.16 E-value=0.66 Score=32.24 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--cHhhHHHHHHHHHccCCHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK---KTFEASRVFEHLVSLGVKP--NAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..+.+-|.+.... +. ++..+--.+--++++.+ +++++..+|++..+.. .| ....+-.|--+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444432 22 44444444444555555 4445666666655543 23 2233333333446666666666
Q ss_pred HHHHHHHH
Q 027083 162 SVIDEMVN 169 (228)
Q Consensus 162 ~~~~~m~~ 169 (228)
+.++...+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.13 E-value=1.8 Score=34.73 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=31.6
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
.++.+|.++-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++|...+......
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344445444444444455555555555555443 44444433334444455555555555444443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.11 E-value=0.64 Score=32.28 Aligned_cols=84 Identities=8% Similarity=0.075 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhH
Q 027083 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR---DQKAALSVIDEMVNAGFAP--SKETLKKVRRRCVREMDEESN 195 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a 195 (228)
.+..+++-|.+-...|. ++..+.-.+--++++++ +++++..+|++..+.. .| ....+-.|--++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777766665 67777777777889988 6679999999988765 45 233333455567999999999
Q ss_pred HHHHHHHHHcC
Q 027083 196 DRVEALAKKFD 206 (228)
Q Consensus 196 ~~~~~~m~~~g 206 (228)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998743
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.08 E-value=0.91 Score=31.06 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=90.7
Q ss_pred cHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 027083 49 TLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRV 128 (228)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 128 (228)
...+......+.-.+. +..-||-.|--....-+-+-..++++.+.+-..+. .++++......
T Consensus 22 ~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi~C 83 (172)
T 1wy6_A 22 YIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVVEC 83 (172)
T ss_dssp CHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHHHH
T ss_pred hHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHHHH
Confidence 3444444444433323 45566667766666667676666666665532111 22333333322
Q ss_pred HHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 129 FEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 129 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
+-.+ ..+...++.-++....+|.-++-.++..++.. +.+|++...-.+-.+|.+.|+..++..++...-+.|++
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 2221 23667788888889999999998888888543 45788888889999999999999999999999999986
Q ss_pred c
Q 027083 209 M 209 (228)
Q Consensus 209 ~ 209 (228)
-
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.93 E-value=0.96 Score=39.68 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVG 97 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 97 (228)
+...|..+=..+.+.++++.|.+.|..+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34445555555555555555555555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.82 E-value=2.1 Score=34.36 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=29.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 105 DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
+..+|.++--.+...|++++|...+++....+ |+...|..+=..+.-.|++++|.+.+++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444455555555555554443 444444444444445555555555554433
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.76 E-value=0.68 Score=32.38 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhChhc--------HHHHHHHHhchhhcCCCCCCHHHHH
Q 027083 3 DLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGFET--------LDSVYFQLENLSRAEPPYKSVAAIN 74 (228)
Q Consensus 3 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
.+++|...++...+.. +.....|+.+-.++.+.+..+ ..++...+++.....|. +..+|.
T Consensus 17 ~feeA~~~~~~Ai~l~----------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~ 84 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN----------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHH
Confidence 4556666665554442 122445666666776665322 23444444444443433 455666
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 027083 75 CVILGCANIW-----------DLDRAYQTFEAVGSSFGLTPDIHSYNALI 113 (228)
Q Consensus 75 ~ll~~~~~~~-----------~~~~a~~~~~~m~~~~~~~p~~~~~~~li 113 (228)
.+=.+|...| ++++|...|++... +.|+...|..-+
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 6666665543 55666666665554 345544443333
No 216
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.33 E-value=1.2 Score=30.16 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 027083 158 KAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNL 221 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l 221 (228)
-+..+-++.+....+.|+.....+.+++|.|.+++..|.++++-++.+- .+...+|.-++.-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 3344455555556666666666666666666666666666666554322 22244565555544
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.29 E-value=3.4 Score=35.15 Aligned_cols=150 Identities=9% Similarity=-0.014 Sum_probs=110.3
Q ss_pred HHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 027083 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD----------LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLK 120 (228)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 120 (228)
.+++....+.....|- +..+|+.-=..+...++ +++++..++.+.+. -+-+...|+.---.+.+.+
T Consensus 46 eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 3445555555554544 77788877666666666 89999999999874 3345667888888888889
Q ss_pred --CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 027083 121 --KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR-DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE-------- 189 (228)
Q Consensus 121 --~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-------- 189 (228)
+++++...++.+.+...+ |-..|+----.+.+.| ..+++.+.++++.+.. .-|...|+..-..+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999887644 8888998888888888 8899999998887654 33678888777766653
Q ss_pred ------CChhhHHHHHHHHHHcC
Q 027083 190 ------MDEESNDRVEALAKKFD 206 (228)
Q Consensus 190 ------~~~~~a~~~~~~m~~~g 206 (228)
+.++++...+....+..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHhhC
Confidence 34566667766666543
No 218
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.18 E-value=0.68 Score=37.46 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcC-C-CCCCH------------------HhHHHHHHHHHhcCCHHH
Q 027083 68 KSVAAINCVILGCA---NIWDLDRAYQTFEAVGSSF-G-LTPDI------------------HSYNALIYAFGKLKKTFE 124 (228)
Q Consensus 68 ~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~-~-~~p~~------------------~~~~~li~~~~~~~~~~~ 124 (228)
.|...|..++.... ..|+.+.+...+.+...-+ | +-|+. .....++..+...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 36666666665443 3478888888887765421 1 11221 112455677788999999
Q ss_pred HHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 027083 125 ASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN-----AGFAPSKETLKKVRR 184 (228)
Q Consensus 125 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li~ 184 (228)
|...++.+.... ..+...|-.+|.++.+.|+..+|.+.|+...+ .|+.|+..+-...-.
T Consensus 190 a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 190 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 998888877653 34777999999999999999999999988764 599998876554333
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.10 E-value=1.5 Score=30.45 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhcCCCCCCHHh-HHHHHHH------HHhcCCHHHHHHHHHHHHhC
Q 027083 69 SVAAINCVILGCANIWDL------DRAYQTFEAVGSSFGLTPDIHS-YNALIYA------FGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~~~-~~~li~~------~~~~~~~~~a~~~~~~m~~~ 135 (228)
|..+|=..+...-+.|+. +..+++|++... .++|+... |-.-|.. +...+++++|..+|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666777777777777777 777777877776 46665321 1111111 12223444444555444333
Q ss_pred CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 136 GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 136 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
++--+..|-..-.-=.+.|+++.|.+++..-...+
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 12123333333333344455555555554444433
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.09 E-value=1.4 Score=34.18 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=81.2
Q ss_pred CHHHHHHHHH-HHHHc--CC------HHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHh-----cCCHHHHHHHHHH
Q 027083 69 SVAAINCVIL-GCANI--WD------LDRAYQTFEAVGSSFGLTPD---IHSYNALIYAFGK-----LKKTFEASRVFEH 131 (228)
Q Consensus 69 ~~~~~~~ll~-~~~~~--~~------~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~~ 131 (228)
....|..++. .++.. |+ +..|...+++..+ +.|+ -..|..+-..|.+ -|+.++|.+.|++
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 4556655554 33332 33 4566666666654 4566 5578888888998 4999999999999
Q ss_pred HHhCCCCCcHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 027083 132 LVSLGVKPNAMSYSLLVDAHLTN-RDQKAALSVIDEMVNAGFA--PSKETLKKVRR 184 (228)
Q Consensus 132 m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~ 184 (228)
..+.+-.-+..++...-..+++. |+.+.+.+.+++....... |+....+.+-+
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 88764222478888888888885 9999999999999988776 77666655543
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.81 E-value=3.5 Score=34.38 Aligned_cols=97 Identities=7% Similarity=0.073 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHH
Q 027083 84 WDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSV 163 (228)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 163 (228)
++.+.|..+|+...+.. .-+...+...++...+.|+.+.|..+|+... .....|...+.-=...|+.+.+.++
T Consensus 334 ~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47999999999998752 2234456777888889999999999999973 2567888888877788999999998
Q ss_pred HHHHHH----CC-CCC------------CHHHHHHHHHHHH
Q 027083 164 IDEMVN----AG-FAP------------SKETLKKVRRRCV 187 (228)
Q Consensus 164 ~~~m~~----~g-~~p------------~~~t~~~li~~~~ 187 (228)
+++... .+ ..| ...++..+++.|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 407 VDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhh
Confidence 888763 11 111 1267777788874
No 222
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.80 E-value=2.9 Score=33.00 Aligned_cols=166 Identities=7% Similarity=-0.072 Sum_probs=105.8
Q ss_pred chhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 32 FTSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWD-LDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 32 ~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
..+|+----.+.+.+.......+....++....+- |-.+|+----.....|. .+++++.++++... -.-|...|+
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr--Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~ 183 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH 183 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 45566544445555543355566666665554544 88899888877788887 68999999998874 234666777
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHcc-----------CCHHHHHHHHH
Q 027083 111 ALIYAFGKL--------------KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTN-----------RDQKAALSVID 165 (228)
Q Consensus 111 ~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----------g~~~~a~~~~~ 165 (228)
..-..+.+. +.++++...++...... +-|...|+-+--.+.+. +.++++.+.++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 766666554 45788888888877654 33777777554444444 45788888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-----HHHhcCChhhHHHHHHHHHHc
Q 027083 166 EMVNAGFAPSKETLKKVRR-----RCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 166 ~m~~~g~~p~~~t~~~li~-----~~~~~~~~~~a~~~~~~m~~~ 205 (228)
++.+ +.||- .|+.+-. .....+..+++...+..+.+.
T Consensus 263 elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 263 ELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 8876 34653 3432211 222345666666777777653
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.68 E-value=1.5 Score=29.38 Aligned_cols=110 Identities=10% Similarity=0.056 Sum_probs=79.5
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGK----LKKTFEA 125 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a 125 (228)
...++..+.+......+ +.. +=..|...+.++.|.+.|++.... | +...+..|=..|.. .+++++|
T Consensus 11 ~~~A~~~~~~aa~~g~~--~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 11 LKKAIQYYVKACELNEM--FGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHTTCT--THH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCH--hhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 44444444444443332 332 444455667788899999998874 3 66777777777877 8899999
Q ss_pred HHHHHHHHhCCCCCcHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCC
Q 027083 126 SRVFEHLVSLGVKPNAMSYSLLVDAHLT----NRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 126 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 172 (228)
.+.|+...+.| ++..+..|=..|.. .++.++|.+.|+.-.+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998875 55667777777777 7899999999998888774
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.60 E-value=1.8 Score=30.07 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=69.5
Q ss_pred CHHhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCcHh----hHHHHHHHH---HccCCHHHHHHHHHHHHHCC
Q 027083 105 DIHSYNALIYAFGKLKKT------FEASRVFEHLVSLGVKPNAM----SYSLLVDAH---LTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 105 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----t~~~li~~~---~~~g~~~~a~~~~~~m~~~g 171 (228)
|..+|=..++-.-+.|+. +...++|++... .++|+.. .|--|.--| -..+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444444445555555555 566666666554 2344321 111111111 22378888888888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 172 FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 172 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
-+. ...|..--+-=.+.|++..|+++++.....+.+ +.+.....|.+|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNLN 139 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhhh
Confidence 344 666666666666789999999999888887766 4566777777664
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.74 E-value=1.2 Score=35.93 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhhHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-----LGVKPNAMSYSL 146 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 146 (228)
.++..+...|+.+++.......... -..+...|-.+|.++.+.|+..+|.+.|++..+ .|+.|+..+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456667889999999888888763 345888999999999999999999999998754 499998876443
No 226
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.65 E-value=1.7 Score=27.84 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
|.=+..+-++.+.. ..+.|+.....+.+++|-+.+++.-|.++|+-.+.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34445555555555 366666666666666666666666666666655433 2233344555554
No 227
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=91.28 E-value=4.5 Score=31.90 Aligned_cols=151 Identities=9% Similarity=-0.020 Sum_probs=106.4
Q ss_pred HHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC-HHHHH
Q 027083 50 LDSVYFQLENLSRAEPPYKSVAAINCVILGCANIW--DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK-TFEAS 126 (228)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~ 126 (228)
..+.+..+.......|- +..+|+.---.+...+ ++++++.+++.+... -.-|-..|+.---.+.+.|. ++++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 34445555554444443 8889988887777877 489999999999874 24467788888888888888 68999
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHcc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTN--------------RDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE--- 189 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--- 189 (228)
..++.+.+..+. |...|+-.-..+.+. +.++++++.++...... .-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999887654 788888776665554 44778888888776532 23677777665555554
Q ss_pred --------CChhhHHHHHHHHHHcC
Q 027083 190 --------MDEESNDRVEALAKKFD 206 (228)
Q Consensus 190 --------~~~~~a~~~~~~m~~~g 206 (228)
+.++++.+.+..+.+..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC
Confidence 34667777777776644
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.16 E-value=1.9 Score=27.29 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSL------GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
+-.|=..+.+.++++.|...|+...+. .-.+....+..+-.++.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444455555555555555543321 0123444555555566666666666666555543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.49 E-value=2.2 Score=26.95 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=54.2
Q ss_pred CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC---C---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 139 PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA---G---FAPSKETLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g---~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.++.-+-.|=..+.+.|+++.|...|+...+. . -.+....+..+-.++.+.|+++.|...++...+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45556667778888999999999999886642 1 13456788899999999999999999999988743
No 230
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.48 E-value=2.4 Score=28.81 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
.-+..+-++.+....+-|++....+.+.+|-|-+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3344445555555555566666666666666666666666666444422 2233444555543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.42 E-value=4.3 Score=31.48 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=77.8
Q ss_pred CHHhHHHHHH-HHHhc--CC------HHHHHHHHHHHHhCCCCCc---HhhHHHHHHHHHc-----cCCHHHHHHHHHHH
Q 027083 105 DIHSYNALIY-AFGKL--KK------TFEASRVFEHLVSLGVKPN---AMSYSLLVDAHLT-----NRDQKAALSVIDEM 167 (228)
Q Consensus 105 ~~~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~-----~g~~~~a~~~~~~m 167 (228)
....|..++. ++... |. ...|...+++..+. .|+ ...|..+-..|.+ .|+.++|.+.|++-
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3456776665 44442 32 45666677776654 455 6789999999988 59999999999998
Q ss_pred HHCCCCC--CHHHHHHHHHHHHhc-CChhhHHHHHHHHHHcCCC--cchhh
Q 027083 168 VNAGFAP--SKETLKKVRRRCVRE-MDEESNDRVEALAKKFDIR--MNTEN 213 (228)
Q Consensus 168 ~~~g~~p--~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--~~~~~ 213 (228)
.+- .| +..++...-+.+++. |+.+.+.+.++.......+ |+...
T Consensus 231 L~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 231 TRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 874 45 366777778888885 9999999999999998887 66543
No 232
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.06 E-value=2.3 Score=26.50 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 027083 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMV 168 (228)
Q Consensus 123 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 168 (228)
++|..++++..+... -+......+=..+.+.|++++|.+.++.+.
T Consensus 26 ~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444433321 123333333334444444444444444444
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.34 E-value=2.9 Score=27.95 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCChhhHH
Q 027083 122 TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKA---ALSVIDEMVNAGFAP-SK-ETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p-~~-~t~~~li~~~~~~~~~~~a~ 196 (228)
+..+.+-|.+-...|. |+..+--.+--+++++....+ ++.++.+....+ .| .. .-.-.|--++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444433332 444444444445555555444 555555554432 12 11 11222333555666666666
Q ss_pred HHHHHHHH
Q 027083 197 RVEALAKK 204 (228)
Q Consensus 197 ~~~~~m~~ 204 (228)
+..+.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 234
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=86.93 E-value=10 Score=30.13 Aligned_cols=131 Identities=8% Similarity=0.009 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhhcCCCCCCHHhHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANI-W-DLDRAYQTFEAVGSSFGLTPDIHSYN 110 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~p~~~~~~ 110 (228)
.+||.--..+...|. ...+.+..........+- +..+|+.---.+... + +.++++.+++.+... -.-|-..|+
T Consensus 89 taWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~ 163 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWA 163 (349)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHH
Confidence 345554444444442 244455555544443333 677777776666665 5 777777777777753 223455665
Q ss_pred HHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC-------HHHHHHHHHHHHH
Q 027083 111 ALIYAFGKLKKTF--------EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD-------QKAALSVIDEMVN 169 (228)
Q Consensus 111 ~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~ 169 (228)
..--.+.+.+.++ ++...++++.+.... |...|+-.-..+.+.+. ++++++.+++...
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 5554554444444 677777777665543 66667666666666554 4566666655543
No 235
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=86.46 E-value=11 Score=29.97 Aligned_cols=150 Identities=7% Similarity=-0.027 Sum_probs=108.5
Q ss_pred HHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc-C-CHHHHHH
Q 027083 51 DSVYFQLENLSRAEPPYKSVAAINCVILGCANIW-DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKL-K-KTFEASR 127 (228)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-~-~~~~a~~ 127 (228)
.+++....+.....+- +..+|+.-=..+...+ ++++++.+++.+... ..-+...|+.---.+.+. + +++++..
T Consensus 71 e~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3456666666555554 7788988888888888 599999999999873 344666888887777776 7 8899999
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------h
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQK--------AALSVIDEMVNAGFAPSKETLKKVRRRCVREMD-------E 192 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-------~ 192 (228)
+++.+.+... -|-..|+----.+.+.|..+ ++++.++++.+.. .-|-..|+---..+.+.+. +
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999987653 37777876555555544444 8888898888754 3477888888777777765 4
Q ss_pred hhHHHHHHHHHHcC
Q 027083 193 ESNDRVEALAKKFD 206 (228)
Q Consensus 193 ~~a~~~~~~m~~~g 206 (228)
+++...........
T Consensus 225 ~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 225 QDELIYILKSIHLI 238 (349)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 56666666555543
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.15 E-value=5.7 Score=26.49 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--cHhhHHHHHHHHHccCCHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFE---ASRVFEHLVSLGVKP--NAMSYSLLVDAHLTNRDQKA 159 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~ 159 (228)
.+..+.+-|.+-... |. |+..+--.+--++.++....+ +..++++..+.+ .| .....-.|--++.+.|+.++
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344444444444332 22 343333333345555554444 566666655543 12 22223333345566666666
Q ss_pred HHHHHHHHHH
Q 027083 160 ALSVIDEMVN 169 (228)
Q Consensus 160 a~~~~~~m~~ 169 (228)
|.+.++.+.+
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.13 E-value=6.3 Score=26.99 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=67.6
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAAL 161 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 161 (228)
..|++..+...+..+-. +...++..++.+...|.-++..+++.++.. +..|++...-.+-++|.+-|+..++.
T Consensus 73 ~C~NlKrVi~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GCSCTHHHHHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 34566677766665543 566778889999999999999999999643 34688888899999999999999999
Q ss_pred HHHHHHHHCCCC
Q 027083 162 SVIDEMVNAGFA 173 (228)
Q Consensus 162 ~~~~~m~~~g~~ 173 (228)
+++.+.=+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 999998888864
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.09 E-value=7.3 Score=27.66 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...|..|=......|+++-|.+.|..... |..+.--|.-.|+.+...++-+.-...| -+|.-.
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af 96 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSML 96 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHH
Confidence 566888888888888888888888887765 5666667777777777766665554443 256666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
.++.-.|+++++.++|.+ .|-.|....+ ....|-.+.|.++.+.+
T Consensus 97 ~~~l~lGdv~~~i~lL~~---~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAE---GGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTCHHHHHHHHHH---TTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHH---CCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 667777888888888743 3333322211 11245566666665543
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.63 E-value=7.8 Score=27.53 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
.....+.|+++.|.++.+++ -+...|..|=+...+.|+++-|++.|..... |..+.--|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 45566889999999998766 2678999999999999999999999988642 4445555566777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
.+...++-+.-...| -++.....+.-.|+++++.+++
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 766655544444443 2445555566667777666665
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=83.98 E-value=5.7 Score=24.61 Aligned_cols=79 Identities=8% Similarity=0.034 Sum_probs=56.6
Q ss_pred CcHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhH
Q 027083 139 PNAMSYSLLVDAHLTNRD---QKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENR 214 (228)
Q Consensus 139 p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 214 (228)
.|+..+..+-.++...++ .++|..++++.... .| +......+-..+.+.|++++|...++.+.+..-. ....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccH
Confidence 466677777777754444 69999999987763 45 4566666777889999999999999999886543 3334
Q ss_pred HHHHHHH
Q 027083 215 KNILFNL 221 (228)
Q Consensus 215 ~~li~~l 221 (228)
..+....
T Consensus 80 ~~i~~~I 86 (93)
T 3bee_A 80 VTIIESI 86 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 241
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.27 E-value=10 Score=26.13 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK--TFEASRVFEHLVSLGV 137 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~ 137 (228)
..+.+|.-|...||.++|.+.++++.. ..-....+..++..++-+.+. .+.+.+++..+...|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456677777777777777777777753 111233444455555555322 3456666766665544
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.62 E-value=26 Score=28.71 Aligned_cols=194 Identities=12% Similarity=-0.004 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhhCh-hcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHH
Q 027083 2 GDLQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRKGF-ETLDSVYFQLENLSRAEPPYKSVAAINCVILGC 80 (228)
Q Consensus 2 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 80 (228)
|++++|++.+-.+++......+. .........++..|.+.|. ....+.+..+.... +.. ......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~----~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~ql----k~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDL----ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQL----KLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCST----TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTS----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccch----hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhh----HHHHHHHHHHH
Confidence 45677777777776653222222 1123346678888888884 22222222222221 111 22333344333
Q ss_pred ----HHcCCHHH--HHHHHHHHhh--cCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCc---HhhH
Q 027083 81 ----ANIWDLDR--AYQTFEAVGS--SFGLTP---DIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVKPN---AMSY 144 (228)
Q Consensus 81 ----~~~~~~~~--a~~~~~~m~~--~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~t~ 144 (228)
......+. -..+.+.... ...+-. .......|.+.|...|++.+|.+++.++... |.... ...|
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 23333222 2222221111 001111 1223356677888889999999998887543 22111 3467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 145 SLLVDAHLTNRDQKAALSVIDEMVN----AGFAPSK--ETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 145 ~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
-..+..|...+++..|..++..... ....|+. .-+...+..+...+++.+|-+.|..+.+
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7778888888999999888887642 2222321 3444455556666777777766555543
No 243
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.02 E-value=13 Score=24.79 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 027083 73 INCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK--TFEASRVFEHLVSLG 136 (228)
Q Consensus 73 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g 136 (228)
.+.+|.-|...||.++|.+.++++.. ..-....+..++..++-+.+. .+.+.+++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 34555555555666666666655543 111122333334444444321 234455555555443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.94 E-value=37 Score=30.07 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-
Q 027083 71 AAINCVILGCANIWD-LDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKK-TFEASRVFEHLVSL------GVKP- 139 (228)
Q Consensus 71 ~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~p- 139 (228)
+.-..++..+...+. .+.|..+|+++..+ .|...+ ...+|..+.+.++ --+|.++..+..+. ...+
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 344555666665555 68899999999875 343332 3344444444332 23344444443221 1111
Q ss_pred cHhh---H---HHHHHH----HHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 140 NAMS---Y---SLLVDA----HLTNRDQKAALSVIDEMVNAGFAPS-KETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 140 ~~~t---~---~~li~~----~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
+... . ..|+.. |...|+++.|.++-++... ..|+ -.+|..|..+|...|+++.|.-.+.-+
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1110 1 124433 4457999999999887665 4676 689999999999999999999776554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=75.55 E-value=37 Score=30.05 Aligned_cols=52 Identities=17% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDI-HSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
..|...|+.+.|+.+-++... +.|+. .+|-.|.++|.+.|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445678999999999999875 46764 59999999999999999999999876
No 246
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.20 E-value=16 Score=25.07 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHH---HHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD--QKAALSVIDEMVNAGFAPSKET---LKKV 182 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t---~~~l 182 (228)
..+.+|+-|...|+.++|.+.++++..-. ........++..++=+.+. .+.+..++..+...|+-+.... |..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 35678888888888888888888885321 2234555666666665433 3556777888877776554433 4444
Q ss_pred HHHHH
Q 027083 183 RRRCV 187 (228)
Q Consensus 183 i~~~~ 187 (228)
+..+-
T Consensus 90 l~~ld 94 (152)
T 2ion_A 90 YNEIP 94 (152)
T ss_dssp HHHHH
T ss_pred HHhCh
Confidence 44443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.71 E-value=14 Score=23.62 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
..++|..|-+..... +. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356666666666553 22 2222222334566777788877766544 3677777776644 5677777777777
Q ss_pred HHHHHCCCCCCHHHHH
Q 027083 165 DEMVNAGFAPSKETLK 180 (228)
Q Consensus 165 ~~m~~~g~~p~~~t~~ 180 (228)
.++..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 6666665 34444443
No 248
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.76 E-value=11 Score=22.41 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=31.7
Q ss_pred HHhCCCCCcHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 027083 132 LVSLGVKPNAMSYSLLVDAHLTNR-DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDE 192 (228)
Q Consensus 132 m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 192 (228)
+.+.|++++..- -.++..+...+ ..-.+.++.+.+.+.+...+..|....++.+...|-+
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 445555554433 34445454443 3444555666666555555556655566666555543
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.73 E-value=15 Score=23.52 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
..++|..|-+..... +. ...+--+-+..+...|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 456666666666653 22 22222233345667788888877765543 678887777644 5677777777777
Q ss_pred HHHHHCCCCCCHHHHH
Q 027083 165 DEMVNAGFAPSKETLK 180 (228)
Q Consensus 165 ~~m~~~g~~p~~~t~~ 180 (228)
.++..+| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 6666655 34444443
No 250
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=71.22 E-value=10 Score=25.66 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=6.0
Q ss_pred HHHHHHcCCHHHHH
Q 027083 77 ILGCANIWDLDRAY 90 (228)
Q Consensus 77 l~~~~~~~~~~~a~ 90 (228)
+...+..|+.+-+.
T Consensus 46 L~~A~~~~~~~~v~ 59 (165)
T 3twr_A 46 LHFAAGYNRVSVVE 59 (165)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcChHHHHH
Confidence 33444445544333
No 251
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=70.51 E-value=17 Score=22.91 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHH-HHHcCCCcchhhHHHH
Q 027083 159 AALSVIDEMVNAGFAPSKETLKKVRRRCVREMD--EESNDRVEAL-AKKFDIRMNTENRKNI 217 (228)
Q Consensus 159 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~-m~~~g~~~~~~~~~~l 217 (228)
.+.++.+++...|+.|+..+...++..|...+- .+-+.+.+.. ....|..|+.++...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355666667777777777777777776665543 1112222222 3355777777666543
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.48 E-value=19 Score=22.99 Aligned_cols=80 Identities=16% Similarity=-0.029 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 120 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
..-++|..|-+.+...+. ....--+-+.++...|++++|..+.+.+ ..||...|-+|-.. +.|-.+.+..-.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 357888889888887654 3333334455678899999998766433 38999999887654 778888888777
Q ss_pred HHHHHcCC
Q 027083 200 ALAKKFDI 207 (228)
Q Consensus 200 ~~m~~~g~ 207 (228)
..+..+|-
T Consensus 92 ~~la~sg~ 99 (115)
T 2uwj_G 92 AGLGGSSD 99 (115)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 77776664
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.52 E-value=20 Score=22.92 Aligned_cols=80 Identities=14% Similarity=-0.004 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 027083 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVE 199 (228)
Q Consensus 120 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 199 (228)
..-++|..|-+.+...+. ....--+-+.++...|++++|..+.+.+ ..||...|-+|-.. +.|-.+.+..-.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 357889999888887654 3333334455678899999999876543 38999999887655 777777777777
Q ss_pred HHHHHcCC
Q 027083 200 ALAKKFDI 207 (228)
Q Consensus 200 ~~m~~~g~ 207 (228)
..+..+|-
T Consensus 93 ~~la~sg~ 100 (116)
T 2p58_C 93 NRLARSQD 100 (116)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 66666654
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.27 E-value=22 Score=27.15 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=75.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHhhHHHHHHHHHcc
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTN 154 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~ 154 (228)
+....+.|++++++.-...-.+. -+-|...=..+++-+|-.|+++.|.+=++...+.. ..|...+|-.+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 34556789999998887777663 34566677888899999999999999888776542 12333344444443
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHh--cCChhhHHHHHHHHHHc
Q 027083 155 RDQKAALSVIDEMVNAGFAP-----SKETLKKVRRRCVR--EMDEESNDRVEALAKKF 205 (228)
Q Consensus 155 g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~--~~~~~~a~~~~~~m~~~ 205 (228)
+..=.++-..+-.| ...-...++++... .|+.+.|..+-....+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22223334444333 34455566676654 49999999887777553
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.93 E-value=50 Score=26.80 Aligned_cols=96 Identities=18% Similarity=0.015 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCcHh----h
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSS-FGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS---LGVKPNAM----S 143 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~----t 143 (228)
+..-+-..|.+.|+.+.|.+++.++... .+...-...+-.+|+.+...+++..+....+.... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4555678888999999999999998863 12223345677888889999999999988887643 23233332 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
|..++ +...+++..|-..|-+...
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhc
Confidence 33332 2346888888888777654
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.38 E-value=51 Score=26.73 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLG--VKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN---AGFAPSKETLKKV 182 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~l 182 (228)
+...+-+-|.+.|++++|.++|.++.... ...-...+-.+|..+...+++..+...+..... .+-.|+...--..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 66788899999999999999999997653 333456788899999999999999999888763 3323333221111
Q ss_pred HHH--HHhcCChhhHHHHHHHHHHc
Q 027083 183 RRR--CVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 183 i~~--~~~~~~~~~a~~~~~~m~~~ 205 (228)
-.+ +...+++..|-+.|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111 23457888888777665543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.33 E-value=84 Score=29.20 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCC-----------------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPD-----------------------IHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
.+|...|+.++|.+.|.+... |+.++ ..=|..++..|-+.+.++.+.++-....+
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344578999999999987543 22111 12367788888888888888877665443
Q ss_pred CC-CC-Cc--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 135 LG-VK-PN--AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 135 ~g-~~-p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
.. -. ++ ...|..+++++..-|++++|...+-.+.+...+ ..-...||..+|..+.++.
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 32 11 22 225889999999999999999999888766544 4556667666665555433
No 258
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=65.30 E-value=22 Score=24.23 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=26.6
Q ss_pred HHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 132 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+.+.|.+++. .=-.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4444544322 2223344444444444555555555555444455554445555554444
No 259
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.78 E-value=16 Score=25.35 Aligned_cols=70 Identities=7% Similarity=0.057 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhhHHHHHHHHHccCCH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSL--GVKPNAMSYSLLVDAHLTNRDQ 157 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~ 157 (228)
+.+.+-+.+..++.|++++.. =-.+++.+...+..-.|.++++.+.+. +...+..|--.-|+.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444433347766443 345566666666677788888887766 6566677766666667766643
No 260
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=62.07 E-value=22 Score=23.99 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=26.9
Q ss_pred HHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 027083 132 LVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD 191 (228)
Q Consensus 132 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 191 (228)
+.+.|.+++.. =-.++..+...+..-.|.++++.+.+.+...+..|....|+.+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34445443322 223333333334444455555555555444455554445555554444
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.34 E-value=1e+02 Score=28.58 Aligned_cols=137 Identities=10% Similarity=0.006 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCC-------------
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALI--YAFGKLKKTFEASRVFEHLVSLGVKP------------- 139 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p------------- 139 (228)
.++..+...+..+.+.++...... |... ..| .+|..+|++++|...|++.. .|+.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS------DPIA--VYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC------CHHH--HHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC------CcHH--HHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccc
Confidence 455666667777666665433322 3322 233 46889999999999997632 12211
Q ss_pred ----------cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC-C--HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 140 ----------NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG-FAP-S--KETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 140 ----------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
-..-|.-++..+-+.|..+.+.++-+...+.. -.+ + ...|..+++++...|++++|-...-.+-+.
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 12346778888888898888887665544322 111 1 125788899999999999998888766655
Q ss_pred CCCcchhhHHHHHHHHH
Q 027083 206 DIRMNTENRKNILFNLE 222 (228)
Q Consensus 206 g~~~~~~~~~~li~~l~ 222 (228)
..+ ......+|..|+
T Consensus 968 ~~r--~~cLr~LV~~lc 982 (1139)
T 4fhn_B 968 PLK--KSCLLDFVNQLT 982 (1139)
T ss_dssp SSC--HHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHH
Confidence 554 455666666554
No 262
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=61.30 E-value=95 Score=28.09 Aligned_cols=157 Identities=8% Similarity=0.062 Sum_probs=80.3
Q ss_pred HHHHHHHhhChhcH-HHHHHHHhchh---hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 37 PLVVACSRKGFETL-DSVYFQLENLS---RAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 37 ~ll~~~~~~g~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
.++...|+.|..+. ..+...+.... ...+..||. -..+...-.+.|+-++-..+++..+.. .+..--..+
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~----~~~~ek~~l 764 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA----QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC----CSHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc----CCHHHHHHH
Confidence 46666777775322 12222222222 122233342 233333344667777777777777763 344555778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhhHHHHHHHHHccCC-HHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLG-VKPNAMSYSLLVDAHLTNRD-QKAALSVIDEMV---NAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~---~~g~~p~~~t~~~li~~~~ 187 (228)
+.+++...+.+...++++...... +++ ... ..++.+...... .+.|.+.+.+=- ...+..+..++..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRK-QDA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCch-hhH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 899999999998899988776533 333 222 233444443322 244444443211 1122334445677777765
Q ss_pred hc-CChhhHHHHHHH
Q 027083 188 RE-MDEESNDRVEAL 201 (228)
Q Consensus 188 ~~-~~~~~a~~~~~~ 201 (228)
.. ...++..++-..
T Consensus 843 ~~~~t~~~~~~~~~f 857 (909)
T 4fke_A 843 RRFSSEFELQQLEQF 857 (909)
T ss_dssp TTCCSHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHH
Confidence 54 333333333333
No 263
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.83 E-value=13 Score=26.70 Aligned_cols=159 Identities=8% Similarity=-0.089 Sum_probs=78.7
Q ss_pred HHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHH
Q 027083 38 LVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYA 115 (228)
Q Consensus 38 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~ 115 (228)
.+...++.|..+....+.......+......+..- .+.+...+..|+.+-+..+.+ .|..|+... -.+.+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVRLLVT-----AGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS-CCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC-CCHHHHHHHcCCHHHHHHHHH-----cCCCccccCCCCCCHHHH
Confidence 44455555643433333332222233333334333 345566667788765554443 255554332 2344555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 027083 116 FGKLKKTFEASRVFEHLVSLGVKP---NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE---TLKKVRRRCVRE 189 (228)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~ 189 (228)
.++.|..+-+..+++.....++.+ |...++.+.. .++.|..+ +++.+.+.|..++.. .-.+.+...+..
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 567788776666665543222222 3333444444 45566644 444555666655432 223455555666
Q ss_pred CChhhHHHHHHHHHHcCCCcch
Q 027083 190 MDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 190 ~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
|+.+. .+.+.+.|..++.
T Consensus 161 ~~~~~----v~~Ll~~g~~~~~ 178 (241)
T 1k1a_A 161 NSLSM----VQLLLQHGANVNA 178 (241)
T ss_dssp TCHHH----HHHHHHTTCCTTC
T ss_pred CCHHH----HHHHHHcCCCCCC
Confidence 76554 4455566766543
No 264
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.26 E-value=33 Score=23.99 Aligned_cols=133 Identities=8% Similarity=0.045 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh---HHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHhh---HHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS---YNALIYAFGK-LKKTFEASRVFEHLVSLGVKPNAMS---YSLL 147 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t---~~~l 147 (228)
+.|...+..|+.+.-.++.+.+.+. |..||... .+.|.-++.. ..+.....++.+.+.+.|..++... .++.
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttp 118 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCT
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchH
Confidence 4455555566665555556666653 66665432 3344433322 2234444556666666776665433 2133
Q ss_pred HHHHHccCCH-HHHHHHHHHHHH-CCCCCCHHHHH--HHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 027083 148 VDAHLTNRDQ-KAALSVIDEMVN-AGFAPSKETLK--KVRRRCVREMDEESNDRVEALAKKFDIR 208 (228)
Q Consensus 148 i~~~~~~g~~-~~a~~~~~~m~~-~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~ 208 (228)
+...+..|.. ..-.++++.+.+ .|..++..... +.+....+.|..+..+-+...+.+.+.+
T Consensus 119 Lh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp TGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 3333333332 334455655666 66666655542 2344455556665555555555555554
No 265
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.95 E-value=25 Score=23.40 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
..-.|.++++.+.+.+...+..|-..-|+.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444444
No 266
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.87 E-value=20 Score=24.79 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=45.7
Q ss_pred HHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhh
Q 027083 131 HLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNA--GFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 131 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
.+.+.|.+++. .=-.++..+...+..-.|.++++.+.+. +...+..|.-.-|+.+...|-+..
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 35666777644 4456677777777778888888888877 666777777777888887776554
No 267
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.55 E-value=38 Score=22.37 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHH---HHHH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD--QKAALSVIDEMVNAGFAPSKET---LKKV 182 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t---~~~l 182 (228)
..+.+|+-|...|+.++|.+.++++..-. ........++..++=+.+. .+.+..++..+...|+-+.... |..+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 35778899999999999999999986322 2244556667777666543 4667788888888886665443 4444
Q ss_pred HHHHHhcC-ChhhHHHH----HHHHHHcCCCc
Q 027083 183 RRRCVREM-DEESNDRV----EALAKKFDIRM 209 (228)
Q Consensus 183 i~~~~~~~-~~~~a~~~----~~~m~~~g~~~ 209 (228)
+..+-... ++..|..+ .......|+-|
T Consensus 88 ~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 88 YNEIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HhhChHhhcCccchHHHHHHHHHHHHHCCCCC
Confidence 44444331 34444444 44445555543
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.21 E-value=75 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 110 NALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+.+|+=|...++.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555555555555555544
No 269
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=55.57 E-value=24 Score=25.13 Aligned_cols=153 Identities=8% Similarity=-0.004 Sum_probs=73.9
Q ss_pred HHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH---HhHHHH
Q 027083 36 YPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI---HSYNAL 112 (228)
Q Consensus 36 ~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~l 112 (228)
+..+...++.|..+....+.......... ++...+ +.|...+..|+.+-+..+++. |..++. .-++.+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~---~~~~g~-t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~L 77 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATR---TDQDSR-TALHWACSAGHTEIVEFLLQL-----GVPVNDKDDAGWSPL 77 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGC---CCTTSC-CHHHHHHHHTCHHHHHHHHHT-----TCCSCCCCTTSCCHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhc---CCCCCC-CHHHHHHHcCcHHHHHHHHHh-----CCCCCCcCCCCCCHH
Confidence 34566666777433333322221111111 133233 345566677887766655542 444433 223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNA---MSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKET--LKKVRRRCV 187 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~ 187 (228)
...++.|..+- ++.+.+.|..++. ...+.|.. .++.|+.+- ++.+.+.|..|+... -.+.+...+
T Consensus 78 -~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~ 147 (231)
T 3aji_A 78 -HIAASAGXDEI----VKALLVKGAHVNAVNQNGCTPLHY-AASKNRHEI----AVMLLEGGANPDAKDHYDATAMHRAA 147 (231)
T ss_dssp -HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred -HHHHHcCHHHH----HHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 44455676654 4444555655543 33344444 456677654 444455666554321 123444445
Q ss_pred hcCChhhHHHHHHHHHHcCCCcch
Q 027083 188 REMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 188 ~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
..|+.+. .+.+.+.|..++.
T Consensus 148 ~~~~~~~----v~~Ll~~g~~~~~ 167 (231)
T 3aji_A 148 AKGNLKM----VHILLFYKASTNI 167 (231)
T ss_dssp HHTCHHH----HHHHHHTTCCSCC
T ss_pred HcCCHHH----HHHHHhcCCCccc
Confidence 5566554 4455567766653
No 270
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.09 E-value=37 Score=21.42 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHH-----HHHCCCCCCHHHHHHH
Q 027083 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDE-----MVNAGFAPSKETLKKV 182 (228)
Q Consensus 124 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t~~~l 182 (228)
.|.++.+++..-|+.|+..+..-++.-|...+. .+.++..+ ....|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355566666666666666666666666655553 12222222 1244666666655543
No 271
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.17 E-value=29 Score=23.59 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 027083 157 QKAALSVIDEMVNAGFAPSKETLKKVRRRCVREM 190 (228)
Q Consensus 157 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 190 (228)
.-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443344444444444444433
No 272
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=52.90 E-value=46 Score=23.20 Aligned_cols=130 Identities=8% Similarity=0.020 Sum_probs=69.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---HHHHHHHHHc-
Q 027083 78 LGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---YSLLVDAHLT- 153 (228)
Q Consensus 78 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~- 153 (228)
...++.|+++....++..-.. ..+...-.+.+...+..|..+.-.++.+.+.+.|..+|... ++.|.-++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 344567888776666543111 11112223445555666777666677777778887766543 3444443332
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCh-hhHHHHHHHHHH-cCCCcch
Q 027083 154 NRDQKAALSVIDEMVNAGFAPSKE---TLKKVRRRCVREMDE-ESNDRVEALAKK-FDIRMNT 211 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~-~~a~~~~~~m~~-~g~~~~~ 211 (228)
..+.....++.+.+.+.|..++.. -.++.+...+..+.. .....+++.+.+ .|..++.
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 234555567777777877766542 221333333333332 334556777777 7766654
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.80 E-value=36 Score=24.16 Aligned_cols=122 Identities=9% Similarity=0.040 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh---hHHHHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM---SYSLLVDAH 151 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~ 151 (228)
+.+...+..|+.+-+..+++.-.. .....+..-. +.+...++.|..+-+. .+.+.|..|+.. .++.+ ...
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l-~~A 116 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNS-TPLHWATRQGHLSMVV----QLMKYGADPSLIDGEGCSCI-HLA 116 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTTB-CHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCc-chhhcCCcCC-ChhHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHH-HHH
Confidence 466777788888766666553222 1111111122 3444555667755444 444555555432 33344 444
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPS---KETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
++.|+.+ +++.+.+.|..++ ..-.+.+..++.+.+..+ +...+.+.|..++.
T Consensus 117 ~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~----~~~~L~~~~~~~~~ 171 (240)
T 3eu9_A 117 AQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD----PTRLLLTFNVSVNL 171 (240)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST----THHHHHHTTCCTTC
T ss_pred HHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH----HHHHHHhcCCCcch
Confidence 5667755 4444455665543 233344555544444333 33445666666554
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.49 E-value=68 Score=23.72 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=47.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcC-CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHH
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSF-GLTP----DIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAH 151 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 151 (228)
|+.+....++++|..+.++..+.. ++++ +...-...|+.-.....-.-+..+.+++.. .++...--..+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 566667777777777777655321 1221 112223333333333333445555555533 34555556666777
Q ss_pred HccCCHHHHHHHHHHHH
Q 027083 152 LTNRDQKAALSVIDEMV 168 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~ 168 (228)
.+-|+.++|.++|-+.+
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777665544
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.33 E-value=42 Score=26.73 Aligned_cols=79 Identities=9% Similarity=-0.059 Sum_probs=47.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHcCCCcchhhHHHHHHH
Q 027083 143 SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD--EESNDRVEALAKKFDIRMNTENRKNILFN 220 (228)
Q Consensus 143 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 220 (228)
..+.+|.-|...|+.++|.+.++++..-.+.+ ..+..++..++-+.++ .+...+++..+.+.|+-+.........+-
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35677777888888888888887776432222 3445555555555432 34455667777777766555555544444
Q ss_pred HH
Q 027083 221 LE 222 (228)
Q Consensus 221 l~ 222 (228)
++
T Consensus 298 l~ 299 (358)
T 3eiq_C 298 YN 299 (358)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 276
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=51.49 E-value=25 Score=23.24 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 112 LIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
+++.+...+..-.|.++++.+.+.+...+..|-...|+.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455555666666666666555566665555566655553
No 277
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.74 E-value=20 Score=24.03 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCC
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 156 (228)
.+++.+...+..-.|.++++.+.+.+...+..|-..-|+.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4445555555555666777776666655666666666666666554
No 278
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.53 E-value=26 Score=23.67 Aligned_cols=33 Identities=3% Similarity=-0.115 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 123 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
-.|.++++.+.+.+...+..|-..-|+.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444443334444333333333333
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.29 E-value=74 Score=23.51 Aligned_cols=89 Identities=9% Similarity=-0.043 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 027083 111 ALIYAFGKLKKTFEASRVFEHLVSL--GVKP----NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRR 184 (228)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 184 (228)
--++.+....++++|..+.++..+. +.++ +...-...+..-.....-..+..+.+++ .. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 4577888899999999998876442 2222 1122233344334444445555566666 33 567777778889
Q ss_pred HHHhcCChhhHHHHHHHH
Q 027083 185 RCVREMDEESNDRVEALA 202 (228)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m 202 (228)
.+.+.|+-++|.++|-..
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 999999999999887443
No 280
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.20 E-value=33 Score=19.34 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=14.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC
Q 027083 153 TNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 153 ~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
..|+++.|+..+-+|...+.+|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34566666666666665555554
No 281
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.18 E-value=51 Score=22.15 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=39.2
Q ss_pred HHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 130 EHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 130 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
+.+.+.|.+++..= -.++..+...+ .-.|.++++.+.+.+...+..|.-..|+.+...|-+..
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34556676655442 33444444445 55677888888777766777777677777777665443
No 282
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=49.58 E-value=18 Score=24.25 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
=-.++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-+..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345666666666667788888888877777777777777777777765543
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.55 E-value=28 Score=24.09 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=62.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHc
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLT 153 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 153 (228)
.|...+..|+.+-+..+++. |..|+... -.+.+...+..|..+-+..+++.-...--.+|..-.+.|. ..++
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~ 115 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDR-----GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-PAAE 115 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHH-HHHH
Confidence 45556677887666555542 54444322 1233444556777776666664421110112222233333 3466
Q ss_pred cCCHHHHHHHHHHHHHCC-CC---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchh
Q 027083 154 NRDQKAALSVIDEMVNAG-FA---PSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTE 212 (228)
Q Consensus 154 ~g~~~~a~~~~~~m~~~g-~~---p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 212 (228)
.|+.+-+..+++ .| .. +|..-.+.|..++........-..+.+.+.+.|..++..
T Consensus 116 ~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 116 KGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp TTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred cCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence 677665554443 33 22 233333444444433332333467778888888777643
No 284
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=49.11 E-value=24 Score=19.99 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHH-HhhC
Q 027083 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVAC-SRKG 46 (228)
Q Consensus 4 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g 46 (228)
.++|...|.+|.+. .-+.+..||...|... ++-.
T Consensus 2 ~eEae~aF~~lL~~---------~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKE---------NQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHH---------TTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHH---------cCCCCCCcHHHHHHHhccCCC
Confidence 36899999999998 6666777899999988 5533
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.74 E-value=81 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGS 98 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~ 98 (228)
..+|.-|...||+++|.+.++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 4456666666666666666666643
No 286
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.46 E-value=21 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=31.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEE 193 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 193 (228)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 445555555556677778877777766667777666777777666543
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.68 E-value=93 Score=24.07 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVG 97 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~ 97 (228)
+.+|.-|...||.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 344555555555555555555554
No 288
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=46.48 E-value=1.1e+02 Score=26.17 Aligned_cols=86 Identities=5% Similarity=-0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 72 AINCVILGCAN--IWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 72 ~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
.|..-|..+.. ..+.+..+....+...+..+. +..--.-++..|.+.|..+.|.++++.+...-+. +...| .-|.
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~ 557 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIA 557 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHH
Confidence 56566665554 345666777777777643332 2335677788888888888888888888765443 55566 4455
Q ss_pred HHHccCCHHHH
Q 027083 150 AHLTNRDQKAA 160 (228)
Q Consensus 150 ~~~~~g~~~~a 160 (228)
.|+|+|+++.+
T Consensus 558 ~f~rA~~~~~V 568 (570)
T 3f3f_C 558 NFSRAGKYELV 568 (570)
T ss_dssp -----------
T ss_pred HHHHcCChhhc
Confidence 57888887764
No 289
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.48 E-value=47 Score=26.06 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR-DQKAALSVIDEMVNAGFAPSKE---TLKKVRR 184 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~---t~~~li~ 184 (228)
.+.+|+-|...|+.++|.+.++++..-.. ........+..++=+.. .-+.+..++..+.+.|+-+... .|..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 57789999999999999999998853221 12233344444333322 2355567788888777654433 3555555
Q ss_pred HHHhc-CChhhHHHHHHHHHH
Q 027083 185 RCVRE-MDEESNDRVEALAKK 204 (228)
Q Consensus 185 ~~~~~-~~~~~a~~~~~~m~~ 204 (228)
.+-.. =++..+...+..+..
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHG
T ss_pred hChHhhcCccchHHHHHHHHH
Confidence 55544 366677766666554
No 290
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.87 E-value=87 Score=23.02 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCH-HhHH-----HHHHHHHhcCCHHHHHHHHHHHHhC
Q 027083 86 LDRAYQTFEAVGSSFGLTPDI-HSYN-----ALIYAFGKLKKTFEASRVFEHLVSL 135 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~-~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~ 135 (228)
++.|+.+|+.+.+...+..+. .... ..+-.|.+.|.+++|.+++++.-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 688999999999863221121 1222 3345688999999999999987654
No 291
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=45.83 E-value=1e+02 Score=23.91 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 128 VFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 128 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
+++.+.+.|+.|...++.-++..|++.=.++.+.++++-+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 56667778888888888888888888888888888888877665
No 292
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.76 E-value=74 Score=22.49 Aligned_cols=55 Identities=5% Similarity=-0.001 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHh---hHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPNAM---SYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
+...++.|..+-+..+ .+.|..++.. -.+ -+...+..|+.+.+..+++.+.+.|-
T Consensus 125 L~~A~~~~~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLL----IEHGADIRAQDSLGNT-VLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCC-HHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334445554433333 3445444322 222 33444566777766666666666654
No 293
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=45.15 E-value=1.1e+02 Score=24.20 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVG 97 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~ 97 (228)
..+|.-|...||+++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 444555555555555555555553
No 294
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.87 E-value=77 Score=22.14 Aligned_cols=59 Identities=7% Similarity=-0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDI-------HSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
-.-+..+...+..+.|.-+.+.+..-.+..|+. .++..+-+++...+++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334566667777777777666644321233332 24555667788888888888888874
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.60 E-value=57 Score=23.76 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---hhHHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNA---MSYSLLVD 149 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~li~ 149 (228)
+.|...+..|+.+-+..+.+ .|..|+... -.+.+...++.|..+- ++.+.+.|..++. ..++.+..
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 111 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLR-----HGADPVLRKKNGATPFLLAAIAGSVKL----LKLFLSKGADVNECDFYGFTAFME 111 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHH-----cCCCCcccCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCCCccCcccCCHHHH
Confidence 44556666677655544443 244443221 1223333445555443 3334445554432 22333333
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.++.|+.+ +++.+.+.|..++
T Consensus 112 -A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 112 -AAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp -HHHTTCHH----HHHHHHHTTCCTT
T ss_pred -HHHhCCHH----HHHHHHHhCCCcc
Confidence 34555543 3444445554443
No 296
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.45 E-value=49 Score=19.44 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHh
Q 027083 165 DEMVNAGFAPSKETLKKVRRRCVREM-DEESNDRVEALAKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 165 ~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~ 223 (228)
+.|++.|++++..-. .++..+...+ ..-.+.++++.+.+.+...+..+-...+..|+-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 456788988887653 5667776664 566788999999888776677777777766654
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.99 E-value=93 Score=24.08 Aligned_cols=69 Identities=10% Similarity=-0.050 Sum_probs=32.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHcCCCcchhh
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMD--EESNDRVEALAKKFDIRMNTEN 213 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~ 213 (228)
.+.+|.-|...|+.++|.+.++++..-.+. ...+..++..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 345566666666666666666665522111 12333334444443322 2334455555555555444433
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.84 E-value=1.3e+02 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 027083 112 LIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+.+.|...|++.+|.+++.++.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555544444443
No 299
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=41.96 E-value=22 Score=25.97 Aligned_cols=95 Identities=11% Similarity=-0.089 Sum_probs=52.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCH-------HhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCC--------
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDI-------HSYNALIYAFGK--LKKTFEASRVFEHLVSLGVK-------- 138 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~-------- 138 (228)
.|...+..|+.+.+..+++.+... |..++. .-.+.|..+... .|..+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 456667788888777777776663 665543 334455444432 27777777777654433211
Q ss_pred --CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 139 --PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 139 --p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
.|..-++.|..+ +..|+.+-+. .+.+.|..++.
T Consensus 84 ~~~d~~g~t~L~~A-~~~g~~~~v~----~Ll~~ga~~~~ 118 (256)
T 2etb_A 84 TDEFYQGHSALHIA-IEKRSLQCVK----LLVENGADVHL 118 (256)
T ss_dssp CSTTTTTCCHHHHH-HHTTCHHHHH----HHHHTTCCTTC
T ss_pred ccccccCCCHHHHH-HHcCCHHHHH----HHHHcCCCCCc
Confidence 123344445444 5667765444 44455655543
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.95 E-value=1.4e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=-0.172 Sum_probs=29.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhh
Q 027083 188 REMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYS 224 (228)
Q Consensus 188 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~ 224 (228)
+..+.+.|...+..|.+.|..|.......++.+.|=.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edi 303 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDV 303 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4578899999999999999988887777777776643
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.34 E-value=34 Score=24.43 Aligned_cols=126 Identities=11% Similarity=0.037 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---HHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---YSLLVD 149 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~ 149 (228)
+.|...+..|+.+.+..+++..... +..++... -.+.+...+..|+.+- ++.+.+.|..|+... ++. +.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-l~ 84 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTA-AH 84 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCH-HH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCH-HH
Confidence 3566777889999999998877763 66665442 2344555666777654 444455666655432 334 44
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAP---SKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
..+..|+.+-+..+++.....++.+ |..-.+. +...++.|+. .+.+.+.+.|..++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~ 144 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADIDA 144 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCccc
Confidence 4567788766655554333222233 3334444 4444455654 455566667776654
No 302
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=40.82 E-value=94 Score=22.46 Aligned_cols=86 Identities=7% Similarity=-0.053 Sum_probs=39.8
Q ss_pred CCCcHhhHHHHHHHHHccCCHHHHHH-----------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 027083 137 VKPNAMSYSLLVDAHLTNRDQKAALS-----------VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKF 205 (228)
Q Consensus 137 ~~p~~~t~~~li~~~~~~g~~~~a~~-----------~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (228)
..|....|...+...+..|.+.++.. +-+.+...+-.++...|..-|+.|+..+-.+.+.++.+.+-+.
T Consensus 109 ~~p~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~ 188 (221)
T 3ibx_A 109 PTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSL 188 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555556666655555555554422 1112222211122345666666666543333344444444455
Q ss_pred CCCcchhhHHHHHHHHH
Q 027083 206 DIRMNTENRKNILFNLE 222 (228)
Q Consensus 206 g~~~~~~~~~~li~~l~ 222 (228)
+-..+......+...+.
T Consensus 189 ~~~~~~~~~~~~~~~F~ 205 (221)
T 3ibx_A 189 TLASSKQEIEKLKEIFI 205 (221)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHH
Confidence 54445555555554443
No 303
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.98 E-value=88 Score=21.38 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKP 139 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 139 (228)
..+....+.+.+... |+.-|..--...+....+.| ....+|-.++.+.|+.+
T Consensus 45 ~~~~i~~vl~~l~~~-g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 45 TAEDYERVIAWCHEH-GYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHc-CCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 556667777777773 77666655566666665544 23456677777777653
No 304
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=39.94 E-value=53 Score=22.79 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCH--HHHHHHHHHHHHCCCCCC
Q 027083 109 YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQ--KAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 109 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~ 175 (228)
...+|+-|...++.++|...++++..... ....-..+|+.-...++. +.+-.++..+.. ++-+.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~ 78 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMST 78 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCH
Confidence 57889999999999999999999863321 122223333333333332 344566776644 44433
No 305
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.91 E-value=57 Score=24.87 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=8.9
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 027083 77 ILGCANIWDLDRAYQTFE 94 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~ 94 (228)
|...+..|+.+-+..+++
T Consensus 172 L~~A~~~g~~~~v~~LL~ 189 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLD 189 (337)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh
Confidence 334445566555544443
No 306
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=39.35 E-value=38 Score=23.53 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCcHhhHHHHHH
Q 027083 72 AINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVD 149 (228)
Q Consensus 72 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~li~ 149 (228)
....+|.-|...+|.++|...++++... .+ .......+|..-...++ -+.+-+++..+.. + ..+-..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p-~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~----~ls~~~i~~ 83 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-T----VMSTTDVEK 83 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCS-GG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-T----TBCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc-cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-C----CCCHHHHHH
Confidence 4567889999999999999999998752 22 22223344443333333 3346677777743 3 344444444
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 150 AHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 150 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
++.. ..+.++++.- -.|+...|-+-+
T Consensus 84 Gf~~------lle~ldDl~i--DiP~a~~~la~f 109 (165)
T 2rg8_A 84 SFDK------LLKDLPELAL--DTPRAPQLVGQF 109 (165)
T ss_dssp HHHH------HHHHHHHHHH--HCTTHHHHHHHH
T ss_pred HHHH------HHHhChhhcc--cccchHHHHHHH
Confidence 4332 2333333331 157765554443
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.81 E-value=22 Score=25.98 Aligned_cols=94 Identities=9% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh-------HHHHHHHHH--hcCCHHHHHHHHHHHHhCC---------C-
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS-------YNALIYAFG--KLKKTFEASRVFEHLVSLG---------V- 137 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~m~~~g---------~- 137 (228)
|...++.|+.+....+++.+.+. +..++... .+.|..+.. +.|..+-+..+++.-...+ +
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 45566778888888888877664 66666443 355555543 5688777777777643311 1
Q ss_pred CCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 027083 138 KPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 138 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 176 (228)
..|..-++.|.. .+..|+.+- ++.+.+.|..++.
T Consensus 88 ~~d~~g~t~L~~-A~~~g~~~~----v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 88 DVYYRGQTALHI-AIERRCKHY----VELLVEKGADVHA 121 (260)
T ss_dssp CSSEESBCHHHH-HHHTTCHHH----HHHHHHTTCCTTC
T ss_pred ccccCCCCHHHH-HHHcCCHHH----HHHHHhCCCCcCc
Confidence 111133344444 456677654 4444556665554
No 308
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.71 E-value=28 Score=19.62 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCCHH
Q 027083 82 NIWDLDRAYQTFEAVGSSFGLTPDIH 107 (228)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~~p~~~ 107 (228)
...|++.|...|.+++.+..++|+.+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 35689999999999887545666543
No 309
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.15 E-value=1e+02 Score=21.55 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcH-------hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 101 GLTPDIHSY--NALIYAFGKLKKTFEASRVFEHLVSL-GVKPNA-------MSYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 101 ~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
|+.|.-..| -.-++.+...+.++.|+-+.+-+... +..|+. .+...+-+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 566655543 34467788999999999988875443 123442 35667778888999999999999885321
Q ss_pred -C-----------------------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 027083 171 -G-----------------------FAPSKETLKKVRRRCVREMDEESNDRVEALA 202 (228)
Q Consensus 171 -g-----------------------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 202 (228)
. ..++...--.+-.+|...++.++|..+++-+
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1111122233667888889999998887654
No 310
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=37.88 E-value=80 Score=21.31 Aligned_cols=118 Identities=11% Similarity=-0.012 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---HHHHHHH
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---YSLLVDA 150 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~ 150 (228)
.|...+..|+.+-+..+++ .|..++... -.+.+...+..|..+-+ +.+.+.|..++... .+.| ..
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~d~~g~t~L-~~ 111 (179)
T 3f6q_A 42 PLHWACREGRSAVVEMLIM-----RGARINVMNRGDDTPLHLAASHGHRDIV----QKLLQYKADINAVNEHGNVPL-HY 111 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHH-HH
T ss_pred HHHHHHHcCcHHHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCCHH-HH
Confidence 4455556677655444443 244444321 12233344455665433 33344455544332 2333 33
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchh
Q 027083 151 HLTNRDQKAALSVIDEMVNAGFAPSKET---LKKVRRRCVREMDEESNDRVEALAKKFDIRMNTE 212 (228)
Q Consensus 151 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 212 (228)
.+..|+.+ +++.+.+.|..++... .+.+--+ . ...-..+.+.+.+.|..++..
T Consensus 112 A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A-~----~~~~~~~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 112 ACFWGQDQ----VAEDLVANGALVSICNKYGEMPVDKA-K----APLRELLRERAEKMGQNLNRI 167 (179)
T ss_dssp HHHTTCHH----HHHHHHHTTCCSSBCCTTSCCGGGGS-C----HHHHHHHHHHHHHTTCCCSCB
T ss_pred HHHcCCHH----HHHHHHHCCCCcchhccCCCCcHHHH-H----HHHHHHHHHHHHHhhcCcccC
Confidence 35556543 3334445565543211 1111111 1 122345666667777666543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.71 E-value=92 Score=20.98 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 163 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
+-+.+++.|++++..=. .+++.+...+..-.|.++++.+.+.+...+..+-...+..|.
T Consensus 14 ~~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 33456788888775433 356666666677889999999998877777766666665554
No 312
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=37.40 E-value=92 Score=20.87 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 158 KAALSVIDEMVNAGFAP--SKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 158 ~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
.+++.++.+..+.+ | ...-.-.|--++.+.|+.+.|++..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555554433 3 122233334455556666666665555544
No 313
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=36.90 E-value=1.1e+02 Score=23.60 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFA 173 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 173 (228)
++++.+.+.|+.|...++.-++..|++.=.++.+.++++-+...|.+
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 56777888899999999999999999888899999999988877754
No 314
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=36.62 E-value=54 Score=18.92 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 027083 144 YSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVR 188 (228)
Q Consensus 144 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 188 (228)
++-+++.+++..-+++++..+++..+.| ..+..+|-.-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444455555444555555555555444 3344444444444444
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.56 E-value=97 Score=20.87 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 164 IDEMVNAGFAPSKETLKKVRRRCVREM-DEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 164 ~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
.+.|++.|++++..=. .+++.+...+ ..-.|.++++.+.+.+...+..|-...+..|.
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 63 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFD 63 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3457788988886543 3566666665 67789999999999887777776666665554
No 316
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=36.50 E-value=1.9e+02 Score=24.63 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhC-CCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 027083 121 KTFEASRVFEHLVSL-GVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESND 196 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 196 (228)
+.+......+++..+ .+. +..--.-++..|.+.|.++.|.++++.+-.+-+. +...| ..+..|+|+|+++.++
T Consensus 496 ~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred chhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344445555555443 333 4556778899999999999999999888765433 33455 6778899999988764
No 317
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=36.22 E-value=70 Score=19.18 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHH-cCCCcchhhHHH
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRRCVREMD--EESNDRVEALAKK-FDIRMNTENRKN 216 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~-~g~~~~~~~~~~ 216 (228)
+.++-+++...|+.|+..+...++..|...+. -+-+.+++..+.. .|..|+..+...
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L~~ 64 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNS 64 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTTTG
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45566777788888888888888777766543 2333344444443 567777766543
No 318
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=35.79 E-value=90 Score=20.32 Aligned_cols=13 Identities=15% Similarity=-0.084 Sum_probs=5.1
Q ss_pred HHcCCHHHHHHHH
Q 027083 81 ANIWDLDRAYQTF 93 (228)
Q Consensus 81 ~~~~~~~~a~~~~ 93 (228)
+..|+.+.+..++
T Consensus 10 ~~~g~~~~v~~Ll 22 (153)
T 1awc_B 10 ARAGQDDEVRILM 22 (153)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3334444433333
No 319
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=35.48 E-value=1.7e+02 Score=23.26 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HhhHHHHHHHHHccCCH--HHHHHHHHHHHHCCCCCCH
Q 027083 108 SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN----AMSYSLLVDAHLTNRDQ--KAALSVIDEMVNAGFAPSK 176 (228)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~ 176 (228)
....+|.-|...|++++|.+.++++. .|+ ...+..+..++ ..++. +.+-.++..+...|+-+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 45789999999999999999999986 353 33444444444 33332 4455677777776664433
No 320
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.60 E-value=1.3e+02 Score=21.74 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=41.5
Q ss_pred CCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 102 LTPDIHSYNALIYAFGK--LKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 102 ~~p~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
++-|.--....|.---. ++...++..+|..|.+.|+-. -+..|..--..+-..|++++|.++|+.=++.+-+|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34444444444433222 444566677777776665432 344455555555566777777777776666666663
No 321
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.59 E-value=2.1e+02 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 106 IHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+..+|.+++.|...+.++.|.++.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 4567888888888899999998888764
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.58 E-value=47 Score=22.89 Aligned_cols=119 Identities=8% Similarity=-0.065 Sum_probs=58.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccC
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNR 155 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 155 (228)
.+...+..|+.+-+..+++.-... --.+|..-. +.+...++.|..+-+..+++.-...--.+|..-++.|..+.....
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKHATPD-LNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCC-TTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred HHHHHHHcCCHHHHHHHHhccCcc-cccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence 355566778888777776543321 111222222 234445567777666666544211101234444556665544333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHH
Q 027083 156 DQKAALSVIDEMVNAGFAPSKETL--KKVRRRCVREMDEESND 196 (228)
Q Consensus 156 ~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~ 196 (228)
....-.++++.+.+.|..|+.... .+.+...++.|+.+.++
T Consensus 153 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp CSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 233345667777777876653211 12344444555554433
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.36 E-value=1e+02 Score=20.24 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=40.7
Q ss_pred HHHhCCCCCcHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 131 HLVSLGVKPNAMSYSLLVDAHLTNR-DQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 131 ~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
.+.+.|.+++..= -.++..+...+ ..-.|.++++.+.+.+...+..|....|+.+...|-+..
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4566777655443 34555555555 566778888888777766777777777777777766543
No 324
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.76 E-value=1.5e+02 Score=21.47 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 027083 69 SVAAINCVILGCAN--IWDLDRAYQTFEAVGSSFGLTPDI-HSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140 (228)
Q Consensus 69 ~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 140 (228)
|.--....|..--. .++..++.++|..|.++ |+--.. ..|-..-..+-..|++.+|..+|+.=.+.+-+|-
T Consensus 76 D~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 76 DPRFLKIWIWYINLFLSNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHhhcccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 55444444443333 44578999999999986 776654 4678888889999999999999999888877773
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.49 E-value=94 Score=19.22 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 121 KTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
..+.|.++++.+.+.| ...|..+++++...|+...|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4455555555555432 24555555555544554444
No 326
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.49 E-value=2.5e+02 Score=24.12 Aligned_cols=115 Identities=8% Similarity=-0.010 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHH
Q 027083 85 DLDRAYQTFEAVGSSFGLTPDIHSYN----ALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAA 160 (228)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 160 (228)
+.+.|...+....+...+ +..... .+...+...+...++...+....... ++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 778899999888754233 333332 23333344452445555555544433 3333333444445678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 027083 161 LSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKK 204 (228)
Q Consensus 161 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (228)
...|..|......-+.-.|. +-+++...|+.+++..++..+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998887643322333444 44577788999999999888865
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.33 E-value=1.2e+02 Score=23.35 Aligned_cols=60 Identities=15% Similarity=-0.029 Sum_probs=30.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPN 140 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 140 (228)
.|...+..|+.+-+..+++. |..++...-.+.+...+..|..+-+..+++.-...|..|+
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASV-----GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHH-----CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHC-----CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 34555566776655555443 3333332222334444556676666666665444444433
No 328
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=30.65 E-value=1.6e+02 Score=21.74 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=11.4
Q ss_pred CCHHhHHHHHHHHHhc-CCHHH
Q 027083 104 PDIHSYNALIYAFGKL-KKTFE 124 (228)
Q Consensus 104 p~~~~~~~li~~~~~~-~~~~~ 124 (228)
|....|+..+...+.. |++.+
T Consensus 127 p~~~aYt~~ll~~a~~~g~~~~ 148 (248)
T 3no6_A 127 PSGDHYIKHMYFNAFARENAAF 148 (248)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHH
Confidence 4444566666555555 55544
No 329
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.15 E-value=49 Score=24.13 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLGVKPN---AMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE--TLKKVRRRCV 187 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~ 187 (228)
+...++.|..+-+..+++.. |..++ ....+.+..+ +..|......++++.+.+.|..++.. .-.+.+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 33444555555444444321 33322 2233344443 33444333445555566666554321 1112333444
Q ss_pred hcCChhhH
Q 027083 188 REMDEESN 195 (228)
Q Consensus 188 ~~~~~~~a 195 (228)
+.|+.+.+
T Consensus 228 ~~~~~~~v 235 (285)
T 1wdy_A 228 EKKHLGLV 235 (285)
T ss_dssp HTTCHHHH
T ss_pred HcCCHHHH
Confidence 45554443
No 330
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.26 E-value=91 Score=18.83 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHh
Q 027083 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSR 44 (228)
Q Consensus 4 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 44 (228)
.++|...|.+|... ..+.+..+|...|...+.
T Consensus 16 ~eea~~~Fk~LL~e---------~~V~p~~tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLE---------RGVSAFSTWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHH---------TTCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---------cCcCCCCCHHHHHHHHcc
Confidence 57899999999999 556666778777755544
No 331
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.07 E-value=1.5e+02 Score=20.63 Aligned_cols=140 Identities=10% Similarity=-0.048 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLV 148 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 148 (228)
+...-...+.++...++.+.. ..+.++.. .+|..+-...+.++++.+..+....+. ++.+ .||...-...+
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAV-EPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAA 133 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHH-HHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh---CCCHHHHHHHH
Confidence 666777777888887764433 33333433 267778888888888888855444444 4443 47777777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 027083 149 DAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLEYSA 225 (228)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~~~~ 225 (228)
.++++.|..+ +...+..+.. .|+..+=...+.++.+.+..+....+.. +.+. ++...-...+.+|..+.
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEK-LAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhC---CCHHHHHHHHHHHHhcC
Confidence 8888887754 3444444443 4677777788888888887544444444 4432 56667777777776554
No 332
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.96 E-value=1e+02 Score=21.47 Aligned_cols=121 Identities=9% Similarity=-0.086 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh---hHHHHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM---SYSLLVDAH 151 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~ 151 (228)
+.+...+..|+.+-+..+++.-... --.++..-.+.+ ...++.|..+-+. .+.+.|..++.. -.+. +...
T Consensus 60 t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~-L~~A 132 (223)
T 2f8y_A 60 TPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPL-ILAARLAVEGMLE----DLINSHADVNAVDDLGKSA-LHWA 132 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHBTTSC-TTCCCTTCCCHH-HHHHHHTCHHHHH----HHHHTTCCTTCBCTTSCBH-HHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCcHH-HHHHHhCcHHHHH----HHHHcCCCCcCcCCCCCcH-HHHH
Confidence 4556667778877666665532211 111223333344 3344566655444 444455555433 2333 4444
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcch
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSK---ETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNT 211 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 211 (228)
+..|+.+- ++.+.+.|..++. .-.+ .+...++.|+.+ +.+.+.+.|..++.
T Consensus 133 ~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 186 (223)
T 2f8y_A 133 AAVNNVDA----AVVLLKNGANKDMQNNREET-PLFLAAREGSYE----TAKVLLDHFANRDI 186 (223)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred HHcCCHHH----HHHHHHcCCCCCCcCCCCcC-HHHHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 56677554 4444556655543 2222 344445556554 45556667776654
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.96 E-value=1.3e+02 Score=20.03 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=40.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcchhhHHHHHHHHH
Q 027083 164 IDEMVNAGFAPSKETLKKVRRRCVREMDEESNDRVEALAKKFDIRMNTENRKNILFNLE 222 (228)
Q Consensus 164 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~l~ 222 (228)
.+.+++.|++++..=. .+++.+...+..-.|.++++.+.+.+...+..+-...+..|.
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 3457788988886443 356666666677789999999998877666666665555554
No 334
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=28.44 E-value=2e+02 Score=21.94 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGF 172 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 172 (228)
++++.+.+.|+.|...++.-++..+++.=.++.+.++++-+...|.
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 3566667778888888888888888887778888888888777664
No 335
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.25 E-value=63 Score=19.42 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=13.4
Q ss_pred CCCcHhhHHHHHHHHHccCCHHHHHHHHHH
Q 027083 137 VKPNAMSYSLLVDAHLTNRDQKAALSVIDE 166 (228)
Q Consensus 137 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 166 (228)
+.|+..||+-+.+.+-+..-..+++.+.++
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345555555555543333333444444433
No 336
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.14 E-value=81 Score=20.81 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVREMDEES 194 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 194 (228)
|...+.+|+.+.|+++++-..+.| +...|.+.+-.|...=+++.
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHH
Confidence 333444555555555555555444 44445555555444444443
No 337
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.91 E-value=1.5e+02 Score=20.51 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=36.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 027083 104 PDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVR 183 (228)
Q Consensus 104 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 183 (228)
+|..+-...+.++++.+..+....+.+.+ . .+|...-...+.++++.|..+. ...+.++.. .|+..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKAL-K---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHH
Confidence 34444455555555555433322222222 2 2455555555555555554322 222222221 34544444555
Q ss_pred HHHHhcCChh
Q 027083 184 RRCVREMDEE 193 (228)
Q Consensus 184 ~~~~~~~~~~ 193 (228)
.++.+.++.+
T Consensus 134 ~aL~~~~~~~ 143 (211)
T 3ltm_A 134 FALGEIGDER 143 (211)
T ss_dssp HHHHHHCCGG
T ss_pred HHHHHcCCHH
Confidence 5555555433
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.84 E-value=68 Score=23.95 Aligned_cols=81 Identities=7% Similarity=-0.013 Sum_probs=37.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhhHHHHHHHHH
Q 027083 77 ILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS---YNALIYAFGKLKKTFEASRVFEHLVSLGVKP-NAMSYSLLVDAHL 152 (228)
Q Consensus 77 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~ 152 (228)
+...+..|+.+-+..+++. |..++... +.+.+...+..|..+-+..++ +.|..+ +...-.+.+...+
T Consensus 99 L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~ 169 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITI 169 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHH
Confidence 4445566776655555543 33333222 134444555566655443333 333332 2212233344445
Q ss_pred ccCCHHHHHHHHHH
Q 027083 153 TNRDQKAALSVIDE 166 (228)
Q Consensus 153 ~~g~~~~a~~~~~~ 166 (228)
..|..+-+.-+++.
T Consensus 170 ~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 170 KNGHVDMMILLLDY 183 (285)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcChHHHHHHHHHc
Confidence 66776655555543
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.75 E-value=1.9e+02 Score=21.24 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCCCcHh-------hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 027083 122 TFEASRVFEHLVSLGVKPNAM-------SYSLLVDAHLTNRDQKAALSVIDEMVNA 170 (228)
Q Consensus 122 ~~~a~~~~~~m~~~g~~p~~~-------t~~~li~~~~~~g~~~~a~~~~~~m~~~ 170 (228)
++.|..+++.+.+.-..|+.. .=-..+-.|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 466777777776653222222 1224556789999999999999987653
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.74 E-value=1.7e+02 Score=20.53 Aligned_cols=124 Identities=10% Similarity=-0.042 Sum_probs=69.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh----------
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFG---LTPDIHSYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAM---------- 142 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------- 142 (228)
.|...+..|+.+-+..+++.-..-.. ...|..-.+. +...+..|..+-+..+ .+.|..++..
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~~~~~~~~ 114 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA-LHIAVINQNVNLVRAL----LARGASVSARATGSVFHYRP 114 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCCSGGGSCCT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH-HHHHHHcCCHHHHHHH----HhCCCCCCcccCCcceeecc
Confidence 45666677888887777765322000 1112222333 3444566776544444 4556555543
Q ss_pred ------hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 027083 143 ------SYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE--TLKKVRRRCVREMDEESNDRVEALAKKFDIRM 209 (228)
Q Consensus 143 ------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 209 (228)
-.+.| ...+..|+.+- ++.+.+.|..++.. .-.+.+...+..|+.+.+..+.+.+.+.|..+
T Consensus 115 ~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 115 HNLIYYGEHPL-SFAACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TCSCCCCSSHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred cccccCCCCHH-HHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 33344 44466677554 44445566555421 12235566677888888888889999888754
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.21 E-value=1.4e+02 Score=19.44 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027083 92 TFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS 134 (228)
Q Consensus 92 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (228)
+|+.+... .+.|++..--.-|-.+...++++.|..+..++..
T Consensus 48 LfdkLn~~-~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGG-KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444442 4544443333333444555666666666655543
No 342
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.93 E-value=1.6e+02 Score=20.00 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027083 124 EASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 124 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 169 (228)
.+..+++++.+.+-.-.....--|--++.+.|+.++|.+..+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555544432211222223333344555555555555554444
No 343
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=25.81 E-value=2.2e+02 Score=22.67 Aligned_cols=63 Identities=8% Similarity=0.090 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 027083 108 SYNALIYAFGKLKK--TFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAG 171 (228)
Q Consensus 108 ~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 171 (228)
||..+|+.+....+ .++|..+++.+.+-. -++.+.=..|+..+.+.-..++...+.+-|++.+
T Consensus 25 t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 25 SWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp CHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 45555555544443 344555555544432 2233333333333333334444444444455444
No 344
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.61 E-value=4e+02 Score=24.57 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhhChhcHHHHHHHHhchhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 027083 33 TSLYPLVVACSRKGFETLDSVYFQLENLSRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHSYNAL 112 (228)
Q Consensus 33 ~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 112 (228)
..|..|++.+.....++....+..... ....-..++++....|-.....-+.+.+..+ .+.+.....- +
T Consensus 311 ~~f~~Lv~~lR~~~~e~L~~l~~~~~~---------~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~-~l~~~ea~~~-l 379 (1056)
T 1lsh_A 311 AKFLRLTAFLRNVDAGVLQSIWHKLHQ---------QKDYRRWILDAVPAMATSEALLFLKRTLASE-QLTSAEATQI-V 379 (1056)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTT---------SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTT-CSCHHHHHHH-H
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc---------cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcC-CCCHHHHHHH-H
Confidence 457888888888886666666555432 1224455899999999998888777777764 5554443222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCc-------HhhHHHHHHHHHccCC------HHHHHHHHHHHHHCCCCCCHHH
Q 027083 113 IYAFGKLKKTFEASRVFEHLVSLG-VKPN-------AMSYSLLVDAHLTNRD------QKAALSVIDEMVNAGFAPSKET 178 (228)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t 178 (228)
..+..-.-=-.+..+.+..+.+.. +..+ ..+|.+|+.-+|.... ++...+.+.+-...+ |..-
T Consensus 380 ~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~---~~~~ 456 (1056)
T 1lsh_A 380 ASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA---KEEE 456 (1056)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT---CHHH
T ss_pred HHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC---ChHH
Confidence 222221112234555555554432 1222 4468888888886531 233333333333443 5555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 027083 179 LKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
-...|.++.+.|..+....+...
T Consensus 457 ~~~~LkaLGN~g~p~~l~~l~~~ 479 (1056)
T 1lsh_A 457 IVLALKALGNAGQPNSIKKIQRF 479 (1056)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHhhccCChhHHHHHHHh
Confidence 56678888888887654444333
No 345
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=25.43 E-value=1.9e+02 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCCCHHhHHHHHHHHHhc-CCHHHH
Q 027083 102 LTPDIHSYNALIYAFGKL-KKTFEA 125 (228)
Q Consensus 102 ~~p~~~~~~~li~~~~~~-~~~~~a 125 (228)
..|....|+..+...+.. |++.++
T Consensus 106 ~~p~~~aY~~~l~~~a~~~~~~~~~ 130 (229)
T 4fn6_A 106 WPPSGDHYIKHMYFQAHSRENAIYT 130 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCHHHH
Confidence 344455566666555555 665543
No 346
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.26 E-value=2.8e+02 Score=22.59 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=24.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 027083 152 LTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCV 187 (228)
Q Consensus 152 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 187 (228)
.+.++++.|..++.+|.+.|..|....=..++.+.-
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e 301 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASE 301 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 356789999999999999887775444333333333
No 347
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=25.20 E-value=1.2e+02 Score=20.50 Aligned_cols=46 Identities=2% Similarity=-0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 027083 86 LDRAYQTFEAVGSSFGLTP---DIHSYNALIYAFGKLKKTFEASRVFEHL 132 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m 132 (228)
++.+.++.+...+..|+.| +..++..+++...+.|-+++.. .+-.|
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~-~w~~m 102 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMS-KWVAY 102 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHH-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHH-HHHHH
Confidence 4455555555554335554 4677777788777777776653 34444
No 348
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=24.88 E-value=1.1e+02 Score=19.91 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027083 87 DRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLV 133 (228)
Q Consensus 87 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 133 (228)
+.+.+++.....+.| ...|...|+.++.+++.-+-|+.+-+.+.
T Consensus 47 eq~~~mL~~W~~r~G---~~ATv~~L~~AL~~i~~~diAe~Ie~~l~ 90 (122)
T 3ezq_B 47 ERVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVADLVQEVQQ 90 (122)
T ss_dssp HHHHHHHHHHHHHCT---TTCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC---CCchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555554323 33478888888888888777777666554
No 349
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.86 E-value=72 Score=23.37 Aligned_cols=94 Identities=10% Similarity=-0.023 Sum_probs=49.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCC-------CHHhHHHHHHHHH--hcCCHHHHHHHHHHHHhC---------CC
Q 027083 76 VILGCANIWDLDRAYQTFEAVGSSFGLTP-------DIHSYNALIYAFG--KLKKTFEASRVFEHLVSL---------GV 137 (228)
Q Consensus 76 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~---------g~ 137 (228)
.|...+..|+.+.+..+++..... +... |..-++.|..++. +.|..+-+..+++.-... +.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRS-KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHS-CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhc-ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 344555677777777777765542 3322 3344556655554 357777777777654321 11
Q ss_pred C-CcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 138 K-PNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 138 ~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
. .|..-++.|..+ ++.|+.+-+. .+.+.|..++
T Consensus 95 ~~~d~~g~tpL~~A-~~~g~~~~v~----~Ll~~ga~~~ 128 (273)
T 2pnn_A 95 TDSYYKGQTALHIA-IERRNMTLVT----LLVENGADVQ 128 (273)
T ss_dssp CSTTTTTCCHHHHH-HHTTCHHHHH----HHHHTTCCTT
T ss_pred ccccCCCCCHHHHH-HHcCCHHHHH----HHHHCCCCcC
Confidence 1 233444555554 5667765444 3444555444
No 350
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=23.66 E-value=1.7e+02 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 027083 160 ALSVIDEMVNAGFAPSKETLKKVRRR 185 (228)
Q Consensus 160 a~~~~~~m~~~g~~p~~~t~~~li~~ 185 (228)
.+.+|+.+++..+.++......++.+
T Consensus 73 lE~ll~~lr~g~~~~~~~l~dlll~~ 98 (144)
T 3kyj_A 73 CEDLIGLVRDAGVPMDGEIVEILLFA 98 (144)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45566666666666666666666655
No 351
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.41 E-value=1.2e+02 Score=17.70 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCcchhHHHHHHHHHhh
Q 027083 4 LQRAFITLNEFETAYGDSIIDMEEIFSPFTSLYPLVVACSRK 45 (228)
Q Consensus 4 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 45 (228)
.++|...|.+|... ..+.+..+|...+...+.-
T Consensus 14 ~eea~~~F~~LL~e---------~~V~~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 14 KEEAKQAFKELLKE---------KRVPSNASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHH---------TTCCTTCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH---------cCcCCCCCHHHHHHHHccC
Confidence 57899999999988 5566667888887766553
No 352
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.32 E-value=1.9e+02 Score=19.99 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--cHhhHHHHHH-HH-----HccCCHHHHHHHHHHHHH
Q 027083 118 KLKKTFEASRVFEHLVSLGVKP--NAMSYSLLVD-AH-----LTNRDQKAALSVIDEMVN 169 (228)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~li~-~~-----~~~g~~~~a~~~~~~m~~ 169 (228)
..|++-+|.+++++.-...-.| ....|-.||. .. .+.|+.+.|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488999999999987765555 6677778887 22 246888889888887653
No 353
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.74 E-value=2.6e+02 Score=21.34 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhhHHH
Q 027083 69 SVAAINCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIHS--YNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMSYSL 146 (228)
Q Consensus 69 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 146 (228)
|..-++. |...+..|+.+.+..+++. |..++... -.+.+...++.|..+-+..+++ .|..++...-.+
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIET-----GVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----VGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHHc-----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCccccCCCC
Confidence 5544444 4555677888877776652 44444322 1234455566777765555554 344444422233
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 147 LVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 147 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
.+...+..|+.+-+..+++.-...|..|+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 44445677888887777776554454443
No 354
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.69 E-value=1.6e+02 Score=18.87 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCcHhhHHHHHHHHHccCC
Q 027083 86 LDRAYQTFEAVGSSFGLTPDIHSYNALIYAFGKLKKTFEASRVFEHLVS-LGVKPNAMSYSLLVDAHLTNRD 156 (228)
Q Consensus 86 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~ 156 (228)
++.|..-+++.... .+|......+|..+-.+ ++.|+++..+..+ .|+ ++.++...+....+.|-
T Consensus 4 ~~~al~~L~e~~~~---~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~gl 68 (119)
T 1wty_A 4 LARAVERLKAALER---PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGL 68 (119)
T ss_dssp HHHHHHHHHHHHSS---CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCC
Confidence 34445545554331 34555555555555444 4445555544332 233 23344444444444443
No 355
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=22.62 E-value=1.6e+02 Score=18.91 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH---HHHHHHHHHcCCCcchhhHHHHHH
Q 027083 163 VIDEMVNAGFAPSKETLKKVRRRCVREMDEESN---DRVEALAKKFDIRMNTENRKNILF 219 (228)
Q Consensus 163 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a---~~~~~~m~~~g~~~~~~~~~~li~ 219 (228)
.+.++...|...|..|.. ..+.+.|.++.+ .-+.+.+.......+...|..+|+
T Consensus 61 ai~~L~~~g~piD~vtv~---~~L~~~~~l~~~GG~~yL~~L~~~~ps~ani~~Ya~iV~ 117 (119)
T 1b79_A 61 EMARLQESGSPIDLITLA---ESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVR 117 (119)
T ss_dssp HHHHHHHTTCCCSHHHHH---HHHHTTTTHHHHTHHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHH---HHHhccCchhhcCcHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333444555555655433 233344444432 122222223333345555655543
No 356
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.59 E-value=1e+02 Score=16.57 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 027083 123 FEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEM 167 (228)
Q Consensus 123 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 167 (228)
++-.+.+.+| .|+...+.+-=.--...|+.+.|..++-.|
T Consensus 5 e~~v~~L~EM-----FP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDM-----FPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHH-----CSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHH-----CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3334444454 344444433333333456666666655444
No 357
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=22.52 E-value=2.5e+02 Score=21.18 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=62.6
Q ss_pred HHHHHHh-CCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHH
Q 027083 128 VFEHLVS-LGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPSKETLKKVRRRCVRE-----MDEESNDRVEAL 201 (228)
Q Consensus 128 ~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~ 201 (228)
+..+..+ ..+.|+..+ .++......-=-+....+|+.+...++..+..++..++..+... ++..-|.-++..
T Consensus 147 Li~rlik~e~l~p~~~~--lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~ 224 (264)
T 2ilr_A 147 LLCCLVKMESLEPDAQV--LMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTV 224 (264)
T ss_dssp HHHHHHHCTTSCHHHHH--HHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHH--HHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHH
Confidence 4444444 666676665 22222222222277788899999999999999999999888754 566777778888
Q ss_pred HHHcCCCcchhhHHHHHHHHHh
Q 027083 202 AKKFDIRMNTENRKNILFNLEY 223 (228)
Q Consensus 202 m~~~g~~~~~~~~~~li~~l~~ 223 (228)
+.+.|-.....+...+..+++.
T Consensus 225 itky~~~i~~~~~~~L~~~l~~ 246 (264)
T 2ilr_A 225 MTKYQANITETQRLGLAMALEP 246 (264)
T ss_dssp HHHTGGGCCHHHHHHHHHHHCS
T ss_pred HHHhHHhcCHHHHHHHHHHHHh
Confidence 8888666666666666665543
No 358
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=22.23 E-value=2.6e+02 Score=23.89 Aligned_cols=35 Identities=6% Similarity=0.029 Sum_probs=18.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027083 61 SRAEPPYKSVAAINCVILGCANIWDLDRAYQTFEA 95 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 95 (228)
+...++.-|..+|-..++-|...|......+++..
T Consensus 19 ~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 19 EEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp C---------CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred hccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 33334434677777777777777777776666654
No 359
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.66 E-value=48 Score=24.80 Aligned_cols=114 Identities=7% Similarity=-0.062 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhh---HHHH
Q 027083 74 NCVILGCANIWDLDRAYQTFEAVGSSFGLTPDIH---SYNALIYAFGKLKKTFEASRVFEHLVSLGVKPNAMS---YSLL 147 (228)
Q Consensus 74 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~l 147 (228)
.+.+...+..|+.+-+..+++ .|..|+.. -++. +...+..|..+-+..+++. |..++... +.+.
T Consensus 63 ~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 63 EFPLHQAATLEDTKIVKILLF-----SGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTS 132 (285)
T ss_dssp CCHHHHHTTSSSCHHHHHHHH-----TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSH
T ss_pred CCHHHHHHHcCCHHHHHHHHH-----CCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCH
Confidence 345666667777766555544 25544432 2333 3444566776655555543 54454433 2455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 027083 148 VDAHLTNRDQKAALSVIDEMVNAGFAP-SKETLKKVRRRCVREMDEESNDRVEAL 201 (228)
Q Consensus 148 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~ 201 (228)
+...+..|+.+- ++.+.+.|..+ +...-.+.+...+..|+.+.++.+.+.
T Consensus 133 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 133 FYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 555667777654 44444555433 221233455555677777766666554
No 360
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.66 E-value=73 Score=22.38 Aligned_cols=115 Identities=6% Similarity=-0.071 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC---cHhhHH
Q 027083 75 CVILGCANIWDLDRAYQTFEAVGSSFGLTP----DIHSYNALIYAFGKLKKTFEASRVFEHLVSLG--VKP---NAMSYS 145 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p---~~~t~~ 145 (228)
+.+...+..|+.+-+..+++.-.. ..+ |..-++.+ ...++.|+.+ +++.+.+.| ..+ |....+
T Consensus 38 t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t 109 (228)
T 2dzn_A 38 IPLHWSVSFQAHEITSFLLSKMEN---VNLDDYPDDSGWTPF-HIACSVGNLE----VVKSLYDRPLKPDLNKITNQGVT 109 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTCTT---CCGGGCCCTTSCCHH-HHHHHHCCHH----HHHHHHSSSSCCCTTCCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccc---ccccccCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCcccccCCcCCCC
Confidence 345566677887765555543211 222 22333444 4445566655 444445555 222 223344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 027083 146 LLVDAHLTNRDQKAALSVIDEMVNAGFAPSKE--TLKKVRRRCVREMDEESNDRVEALAKKFD 206 (228)
Q Consensus 146 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~g 206 (228)
.|.. .++.|+.+- ++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+.+.|
T Consensus 110 ~L~~-A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g 163 (228)
T 2dzn_A 110 CLHL-AVGKKWFEV----SQFLIENGASVRIKDKFNQIPLHRAASVGSLK----LIELLCGLG 163 (228)
T ss_dssp HHHH-HHHTTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHTTT
T ss_pred HHHH-HHHcCCHhH----HHHHHHcCCCccccCCCCCCHHHHHHHcCCHH----HHHHHHhcC
Confidence 4444 456677654 44445556655421 1122344445666654 455555666
No 361
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=20.97 E-value=2.6e+02 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=8.5
Q ss_pred HHhHHHHHHHHHhcCCHHH
Q 027083 106 IHSYNALIYAFGKLKKTFE 124 (228)
Q Consensus 106 ~~~~~~li~~~~~~~~~~~ 124 (228)
...|+..+...+..|++.+
T Consensus 136 t~aYt~~l~~~a~~g~~~~ 154 (263)
T 2qcx_A 136 AYSFTSHMYRSVLSGNFAE 154 (263)
T ss_dssp HHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHhcCCHHH
Confidence 3344444444444444433
No 362
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.74 E-value=91 Score=23.55 Aligned_cols=19 Identities=5% Similarity=-0.181 Sum_probs=9.3
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 027083 75 CVILGCANIWDLDRAYQTF 93 (228)
Q Consensus 75 ~ll~~~~~~~~~~~a~~~~ 93 (228)
+.|...+..|+.+-+..+.
T Consensus 60 t~L~~A~~~g~~~~v~~Ll 78 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLL 78 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH
Confidence 3444455556655444443
No 363
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.60 E-value=1.8e+02 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 027083 127 RVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVIDEMVNAGFAPS 175 (228)
Q Consensus 127 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 175 (228)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+...|-...
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~ 278 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFS 278 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChh
Confidence 3556667778888888888888888888888899999988887775543
No 364
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=20.35 E-value=5.1e+02 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhhHHHHHHHHHccCCHHHHHHHH
Q 027083 120 KKTFEASRVFEHLVSLGVKPNAMSYSLLVDAHLTNRDQKAALSVI 164 (228)
Q Consensus 120 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 164 (228)
=+.++..++++++.. .+... ..++++....|-.+-..-+.
T Consensus 323 ~~~e~L~~l~~~~~~---~~~~r--~~~lDal~~aGT~~a~~~i~ 362 (1056)
T 1lsh_A 323 VDAGVLQSIWHKLHQ---QKDYR--RWILDAVPAMATSEALLFLK 362 (1056)
T ss_dssp SCHHHHHHHHHHHTT---SHHHH--HHHHHHHHHHCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc---cHHHH--HHHHHHhHhcCCHHHHHHHH
Confidence 344555555555432 12222 23555555555544433333
Done!