BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027085
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 110/155 (70%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG 69
++PV ++ A P P++ILEWHYV+ G TP+ GGYY+GK+ FP E+P+KPP I MITPNG
Sbjct: 28 KDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNG 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKA 129
RF +LCLS++DFHP++WNP WSVS+ILTGLLSFM++ K++LA
Sbjct: 88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQ 147
Query: 130 SLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRVSEQ 164
SLAFN K+ F +LFPE VE+ ++Q A+ +S +
Sbjct: 148 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR 182
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 6 FYHVQE-PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGIL- 63
F +QE P V PS N+I++W+ V+ G GTPF G + I+F EYP KPP +
Sbjct: 13 FKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRF 72
Query: 64 ---MITPNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
M PN +CL D W+P + VSSILT + S +
Sbjct: 73 LSKMFHPN--VYADGSICL---DILQNRWSPTYDVSSILTSIQSLL 113
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 24 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 83
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 84 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 19 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 78
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 79 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 117
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 24 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 83
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 84 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 122
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 13 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 72
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 73 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 111
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 14 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 74 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
Q+P + + P N+I+ W+ V+ G + TP+ GG + ++F +YP KPP + ++
Sbjct: 18 QDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN +CL D W+P++ V++ILT + S + D
Sbjct: 78 HPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 32 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 92 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 130
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P ++ A P +D+ W + G +P++GG ++ I FP +YP+KPP + T
Sbjct: 35 KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY 94
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN +Q +CL D + W+P ++S +L + S + D
Sbjct: 95 HPN--INSQGAICL---DILKDQWSPALTISKVLLSISSLLTD 132
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 22 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 81
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 82 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 120
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DILRSQWGPALTISKVLLSICSLLCD 114
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DALRSQWSPALTISKVLLSICSLLCD 114
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 11 EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N 68
+P + A P ++I EW + G G+ + GG ++ I F PEYP+KPP + T +
Sbjct: 63 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 122
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+Q +CL D ++W+P ++S +L + S + D
Sbjct: 123 CNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 159
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 76 YHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P + A P +D+ W + G + +P+ GG ++ I FP +YP+KPP + T
Sbjct: 20 RDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIY 79
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P +VS +L + S + D
Sbjct: 80 HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 117
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P S A P +D+ W + G +P+AGG ++ I FP +YP+KPP + T
Sbjct: 15 KDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIY 74
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D + W+P ++S +L + S + D
Sbjct: 75 HPN--INSNGSICL---DILRDQWSPALTISKVLLSISSLLTD 112
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 16 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+S+ D W+P ++S +L + S + D
Sbjct: 76 YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 114
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P + A P +D+ W + G +P+AGG ++ I FP +YP+KPP I T
Sbjct: 16 RDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIY 75
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN +CL D + W+P ++S +L + S + D
Sbjct: 76 HPN--INANGNICL---DILKDQWSPALTLSKVLLSICSLLTD 113
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 14 ARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+S+ D W+P ++S +L + S + D
Sbjct: 74 YHPAINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P +H A P +D+ W + G + + GG ++ + FP +YP+KPP I T
Sbjct: 17 RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 76
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P +VS +L + S + D
Sbjct: 77 HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 114
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 11 EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--N 68
+P + A P ++I EW + G G+ + GG ++ I F P+YP+KPP + T +
Sbjct: 18 DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH 77
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+Q +CL D ++W+P ++S +L + S + D
Sbjct: 78 CNINSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 114
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P +H A P +D+ W + G + + GG ++ + FP +YP+KPP I T
Sbjct: 33 RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 92
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P +VS +L + S + D
Sbjct: 93 HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 130
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P +H A P +D+ W + G + + GG ++ + FP +YP+KPP I T
Sbjct: 21 RDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 80
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P +VS +L + S + D
Sbjct: 81 HPN--INSNGSICL---DILRSQWSPALTVSKVLLSICSLLCD 118
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 17 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 76
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+S+ D W+P ++S +L + S + D
Sbjct: 77 YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 115
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 14 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+S+ D W+P ++S +L + S + D
Sbjct: 74 YHPNINSNGSISL-DILRSQWSPALTISKVLLSICSLLCD 112
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P + A P +D+ W + G +P+ GG ++ I FP +YP+KPP + T
Sbjct: 18 RDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 77
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + +CL D W+P ++S +L + S + D
Sbjct: 78 HPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 115
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
Q+P + A P +DI W + G + +P+ GG ++ + FP +YP+K P + +T
Sbjct: 18 QDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY 77
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN +CL D + W+P ++S +L + S + D
Sbjct: 78 HPN--INKNGVICL---DILKDQWSPALTLSRVLLSISSLLTD 115
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 13 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 72
Query: 69 GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
+S+ D W+P +S +L + S + D
Sbjct: 73 YHPNINSNGSISL-DILRSQWSPALKISKVLLSICSLLCD 111
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P + V P+ ++IL W ++ G TPF G + ++F EYP KPP + I+
Sbjct: 18 EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 77
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN +CL D W+P + V++ILT + S +
Sbjct: 78 HPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 113
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
++P + A P +D+ W + G N +P+ GG ++ I FP +YP+KPP + T
Sbjct: 32 ARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN + + L D W+P ++S +L + S + D
Sbjct: 92 YHPN--INSNGSIXL---DILRSQWSPALTISKVLLSICSLLCD 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P + V P+ ++IL W ++ G TPF G + ++F EYP KPP + I+
Sbjct: 21 EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF 80
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN +CL D W+P + V++ILT + S +
Sbjct: 81 HPN--VYADGSICL---DILQNRWSPTYDVAAILTSIQSLL 116
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT--- 66
++P +H A P +D+ W + G + + GG ++ + FP +YP+KPP I T
Sbjct: 21 RDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY 80
Query: 67 -PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN KL D W+P +VS +L + S + D
Sbjct: 81 HPNINSNGSIKL-----DILRSQWSPALTVSKVLLSICSLLCD 118
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Query: 16 VVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM--------IT 66
+VA P S N+I W +++G TP+A G + K++FP +YP PP + I
Sbjct: 24 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 67 PNGRFMTQKKLCLS----------MSDFHPESWNPMWSVSSILTGLLSFM 106
PNG ++C+S M + E W+P+ SV IL ++S +
Sbjct: 84 PNG------EVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 127
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 11 EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT---- 66
E V + A ++ EW ++G GTP+ GG++ I P +YPY PP I +T
Sbjct: 38 ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97
Query: 67 PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
PN T +CL D W+P ++ + L + + + D
Sbjct: 98 PNISSQT-GAICL---DVLKNEWSPALTIRTALLSIQALLSD 135
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 16 VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGIL----MITPNGRF 71
V A P P++++ W+ ++ G TP+ G + ++F EYP KPP + M PN
Sbjct: 24 VSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN--V 81
Query: 72 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
++CL D W P + V+SILT + S D
Sbjct: 82 YANGEICL---DILQNRWTPTYDVASILTSIQSLFND 115
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 16 VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 71
V A+ DI W + G GTP+ GG++ I PP+YPY PP + +T PN
Sbjct: 65 VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISS 124
Query: 72 MTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108
T +CL D W+P ++ + L + + + D
Sbjct: 125 QT-GAICL---DILKHEWSPALTIRTALLSIQAMLAD 157
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
D+ W + G T + GGY+ ++KFP +YPY PP +T PN +C+
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN--IYETGDVCI 90
Query: 80 SMSDFHP------------ESWNPMWSVSSILTGLLSFM 106
S+ HP E WNP +V +IL ++S +
Sbjct: 91 SI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 127
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
D+ W + G T + GGY+ ++KFP +YPY PP +T PN +C+
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN--IYETGDVCI 93
Query: 80 SMSDFHP------------ESWNPMWSVSSILTGLLSFM 106
S+ HP E WNP +V +IL ++S +
Sbjct: 94 SI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 16 VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRF 71
+ A+P D++EW +EG + + G + I F EY Y PP + IT PN
Sbjct: 43 ITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102
Query: 72 MTQKKLCLSMSDFHPESWNPMWSVSSILTGL 102
T + C+ D +PE WN +++SSIL L
Sbjct: 103 HTGQP-CIDFLD-NPEKWNTNYTLSSILLAL 131
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 16 VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT 73
+ A P +++ +W L+G T + Y ++FP +YPYKPP + TP +
Sbjct: 29 ITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88
Query: 74 QKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CL D E+W + V +IL L S +
Sbjct: 89 SGNICL---DILKENWTASYDVRTILLSLQSLL 118
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
EP ++A P P + ++ ++ G +GTP+ GG Y ++ P +YP +PP + +T
Sbjct: 14 ANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN + ++CL D + W+P + ++L + + +
Sbjct: 74 YHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
EP ++A P P + ++ ++ G +GTP+ GG Y ++ P +YP +PP + +T
Sbjct: 14 ANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN + ++CL D + W+P + ++L + + +
Sbjct: 74 YHPNIDKLG--RICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 15 HVVARPSPNDILEWH----------YVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM 64
H++A P I W +L G+N TP+ G + ++ P YP++PP I
Sbjct: 14 HMLATEPPPGITCWQDKDQMDDLRAQILGGAN-TPYEKGVFKLEVIIPERYPFEPPQIRF 72
Query: 65 ITP--NGRFMTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXE 121
+TP + + ++CL + P+ +W P +++++LT + M +
Sbjct: 73 LTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP---------- 122
Query: 122 EKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ 155
+ +A S F PAF K ++ EK+ Q+
Sbjct: 123 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 23 NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS 82
NDI +W ++ G T + GG++ + FP +YP KPP + I+ K+ + +S
Sbjct: 31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 83 DFHP------------ESWNPMWSVSSILTGLLSFMMD 108
H E W P+ +V +IL ++S + D
Sbjct: 91 ILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTD 128
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
+ EPV + A P ++ +H V+ G +PF GG + ++ P EYP P +
Sbjct: 16 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 69
Query: 69 GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 70 -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 112
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
+ EPV + A P ++ +H V+ G +PF GG + ++ P EYP P +
Sbjct: 18 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 71
Query: 69 GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 72 -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 114
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
+ EPV + A P ++ +H V+ G +PF GG + ++ P EYP P +
Sbjct: 14 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 67
Query: 69 GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 68 -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 110
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
+ EPV + A P ++ +H V+ G +PF GG + ++ P EYP P +
Sbjct: 19 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 72
Query: 69 GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 73 -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 115
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
+ EPV + A P ++ +H V+ G +PF GG + ++ P EYP P +
Sbjct: 21 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV------ 74
Query: 69 GRFMTQ---------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RFMT+ ++CL D + W+P + ++L + + +
Sbjct: 75 -RFMTKIYHPNVDKLGRICL---DILKDKWSPALQIRTVLLSIQALL 117
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 10 QEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
+P +H+ S +DI G GTP+ GG + I+ P EYP+KPP + T
Sbjct: 16 DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN +T +CL D +W+P+ ++ S L L + +
Sbjct: 76 YHPNISSVT-GAICL---DILRNAWSPVITLKSALISLQALL 113
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 10 QEPVSHVVAR-PSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
+P +H+ S +DI G GTP+ GG + I+ P EYP+KPP + T
Sbjct: 15 DDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 74
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN +T +CL D +W+P+ ++ S L L + +
Sbjct: 75 YHPNISSVT-GAICL---DILKNAWSPVITLKSALISLQALL 112
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM 81
D++ W + G T + GG Y + FP EYP +PP P + +CLS+
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 82 SDFHPESWNPMWSVSSILTGLLSFMMD 108
+ E W P ++ IL G+ + D
Sbjct: 103 LN-EEEGWKPAITIKQILLGIQDLLDD 128
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 16 VVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMT 73
+ A P +++ +W + G+ GT + Y ++FP YPY P + +TP + T
Sbjct: 50 ISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109
Query: 74 QKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
Q + L D E W+ ++ V +IL + S +
Sbjct: 110 QGNISL---DILKEKWSALYDVRTILLSIQSLL 139
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 23 NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMS 82
ND+ W ++ G T + GG + + FP +YP +PP + IT K + +S
Sbjct: 45 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 83 DFH------------PESWNPMWSVSSILTGLLSFMMD 108
H E W P+ +V +I+ ++S + D
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
++L W ++ N P+ G + +I FP EYP+KPP I T PN + ++CL
Sbjct: 33 NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 89
Query: 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 139
+ E+W P ++ L++ + D EE +K F CKN
Sbjct: 90 PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE---YSKDRKKF-CKNAE 143
Query: 140 FRKLFPEYVEKYNEQQ 155
E+ +KY E++
Sbjct: 144 ------EFTKKYGEKR 153
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
++L W ++ N P+ G + +I FP EYP+KPP I T PN + ++CL
Sbjct: 31 NLLTWQGLIVPDN-PPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN--IDEKGQVCL 87
Query: 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPA 139
+ E+W P ++ L++ + D EE + K CKN
Sbjct: 88 PV--ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF----CKNAE 141
Query: 140 FRKLFPEYVEKYNEQQ 155
E+ +KY E++
Sbjct: 142 ------EFTKKYGEKR 151
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 1 MGNGCFYHVQEPVSHVVARP--------SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFP 52
MGN Y +Q+ + + + P PN+I W G T +A Y KI FP
Sbjct: 4 MGNAN-YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFP 62
Query: 53 PEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+YP KPP + + + + +CLS+ + +NP S+S ++ ++S +
Sbjct: 63 DDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF----MTQKKLCL 79
D+ +W + G GT +AGG Y +++P EYP KPP + P G + +CL
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF--PAGFYHPNVYPSGTICL 94
Query: 80 SMSDFHPESWNPMWSVSSILTGLLSFM 106
S+ + + W P ++ I+ G+ +
Sbjct: 95 SILN-EDQDWRPAITLKQIVLGVQDLL 120
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF----MTQKKLCL 79
D+ +W + G GT +AGG Y +++P EYP KPP + P G + +CL
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF--PAGFYHPNVYPSGTICL 96
Query: 80 SMSDFHPESWNPMWSVSSILTGLLSFM 106
S+ + + W P ++ I+ G+ +
Sbjct: 97 SILN-EDQDWRPAITLKQIVLGVQDLL 122
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
D+ +W ++ G + TP+ + I+ P YP PP I + N K ++CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 80 SMSDFHPESWNPMWSV 95
++ PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
D+ +W ++ G + TP+ + I+ P YP PP I + N K ++CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 80 SMSDFHPESWNPMWSV 95
++ PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQK----KLCL 79
D+ +W ++ G + TP+ + I+ P YP PP I + N K ++CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 80 SMSDFHPESWNPMWSV 95
++ PE W P+W +
Sbjct: 106 NI--LKPEEWTPVWDL 119
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 28 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+ +CLS+ + + W P ++ IL G+ +
Sbjct: 88 QVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 28 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 88 NVAPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
V +PV + A P +++ + +EG +P+ G + ++ P +YP + P + +T
Sbjct: 16 VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 75
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN + ++CL D +W+P + ++L + + +
Sbjct: 76 YHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 112
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 27 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 86
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 87 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 23 NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN----GRFMTQKKLC 78
N I +W +EG+ GT + G + KF YP+ P ++ N + +C
Sbjct: 51 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC 110
Query: 79 LSMSDFHPESWNPMWSVSSILTGLLSFM 106
LS+ E W+P SV S+ ++S +
Sbjct: 111 LSILT---EDWSPALSVQSVCLSIISML 135
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 25 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 84
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 85 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 120
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT-- 66
V +PV + A P +++ + +EG +P+ G + ++ P +YP + P + +T
Sbjct: 18 VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 77
Query: 67 --PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
PN + ++CL D +W+P + ++L + + +
Sbjct: 78 YHPNIDRLG--RICL---DVLKTNWSPALQIRTVLLSIQALL 114
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 26 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 85
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 86 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 121
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 28 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 88 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 28 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 88 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 28 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 88 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 123
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 27 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 86
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 87 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 122
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NG 69
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P +
Sbjct: 30 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 89
Query: 70 RFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
+CLS+ + + W P ++ IL G+ +
Sbjct: 90 NVYPSGTVCLSILE-EDKDWRPAITIKQILLGIQELL 125
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 1 MGNGCFYHVQEPVSHVVARP--------SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFP 52
+GN Y +Q+ +++ + P P++I W G T +A Y KI FP
Sbjct: 18 LGNAN-YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFP 76
Query: 53 PEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
YP KPP + + + + +CLS+ + +NP S+S ++ ++S +
Sbjct: 77 DNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIISML 130
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
++L WH +L + P+ + +I FPPEYP+KPP I T PN ++CL
Sbjct: 30 NVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD--ENGQICL 86
Query: 80 SMSDFHPESWNPMWSVSSILTGL 102
+ E+W P +L L
Sbjct: 87 PI--ISSENWKPCTKTCQVLEAL 107
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 24 DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCL 79
++L WH +L + P+ + +I FPPEYP+KPP I T PN ++CL
Sbjct: 33 NVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD--ENGQICL 89
Query: 80 SMSDFHPESWNPMWSVSSILTGL 102
+ E+W P +L L
Sbjct: 90 PI--ISSENWKPCTKTCQVLEAL 110
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 31 VLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNG---RF----MTQKKLCLS-MS 82
++ G TP+A G + + FP +YP PP + + T G RF K+CLS ++
Sbjct: 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174
Query: 83 DFH---PESWNPMWSVSSILTGLLS 104
+H E WNP SS L L+S
Sbjct: 175 TWHGRPEEKWNPQ--TSSFLQVLVS 197
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
V +PV + A P +++ + +EG +P+ G + ++ P +YP + P +
Sbjct: 16 VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV------ 69
Query: 69 GRFMTQ------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RF+T+ +L D +W+P + ++L + + +
Sbjct: 70 -RFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALL 112
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 25/116 (21%)
Query: 12 PVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM------ 64
P +VA P + + EW ++ G T F G + + FP +YP PP +
Sbjct: 19 PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 78
Query: 65 --ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMD 108
I P+GR +C+S+ + E W+P+ SV IL ++S + +
Sbjct: 79 PNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 9 VQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPN 68
V +PV + A P +++ + +EG +P+ G + ++ P +YP + P +
Sbjct: 16 VSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV------ 69
Query: 69 GRFMTQ------KKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
RF+T+ +L D +W+P + ++L + + +
Sbjct: 70 -RFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALL 112
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 25/116 (21%)
Query: 12 PVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM------ 64
P +VA P + + EW ++ G T F G + + FP +YP PP +
Sbjct: 25 PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 84
Query: 65 --ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMD 108
I P+GR +C+S+ + E W+P+ SV IL ++S + +
Sbjct: 85 PNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 134
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 25/116 (21%)
Query: 12 PVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM------ 64
P +VA P + + EW ++ G T F G + + FP +YP PP +
Sbjct: 22 PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 81
Query: 65 --ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMD 108
I P+GR +C+S+ + E W+P+ SV IL ++S + +
Sbjct: 82 PNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 131
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 25/116 (21%)
Query: 12 PVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILM------ 64
P +VA P + + EW ++ G T F G + + FP +YP PP +
Sbjct: 23 PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 82
Query: 65 --ITPNGRFMTQKKLCLSM----------SDFHPESWNPMWSVSSILTGLLSFMMD 108
I P+GR +C+S+ + E W+P+ SV IL ++S + +
Sbjct: 83 PNIYPDGR------VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 132
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 32 LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPE 87
+ G TP+ GG Y +IK P YP+ PP + IT PN +T +CL D +
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKD 151
Query: 88 SWNPMWSVSSI 98
W ++ ++
Sbjct: 152 QWAAAMTLRTV 162
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRF 71
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP P
Sbjct: 25 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 84
Query: 72 MTQKKLCLSMSDFHPE-SWNPMWSVSSILTGLLSFM 106
+S+S + W P ++ IL G+ +
Sbjct: 85 NVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 32 LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPE 87
+ G TP+ GG Y +IK P YP+ PP + IT PN +T +CL D +
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKD 100
Query: 88 SWNPMWSVSSI 98
W ++ ++
Sbjct: 101 QWAAAMTLRTV 111
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 32 LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPE 87
+ G TP+ GG Y +IK P YP+ PP + IT PN +T +CL D +
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKD 99
Query: 88 SWNPMWSVSSI 98
W ++ ++
Sbjct: 100 QWAAAMTLRTV 110
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 32 LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPE 87
+ G TP+ GG Y +IK P YP+ PP + IT PN +T +CL D +
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKD 102
Query: 88 SWNPMWSVSSI 98
W ++ ++
Sbjct: 103 QWAAAMTLRTV 113
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 32 LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPE 87
+ G TP+ GG Y +IK P YP+ PP + IT PN +T +CL D +
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT-GAICL---DILKD 115
Query: 88 SWNPMWSVSSI 98
W ++ ++
Sbjct: 116 QWAAAMTLRTV 126
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 22 PNDILEWHYV-LEGSNGTPFAGGYYYGKIKFPPEYPYKPPGI----LMITPNGRFMTQKK 76
P+D + +V +G GTP+ G + ++ P +YP+K P I ++ PN +
Sbjct: 33 PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS-GS 91
Query: 77 LCLSMSDFHPESWNPMWSVSSILTGLL 103
+CL + + ++W PM+ + +I L
Sbjct: 92 VCLDVIN---QTWTPMYQLENIFDVFL 115
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 17 VARPSPN-----DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGIL----MITP 67
VA P+ N +++ W + G GTP+ GG + ++ F +YP PP + P
Sbjct: 25 VAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 84
Query: 68 NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFM 106
N L + D + W P ++ IL G+ +
Sbjct: 85 NVYPSGTVXLSILEED---KDWRPAITIKQILLGIQELL 120
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 11 EPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGR 70
+P + P+ D+ + +EG GTP+AGG + K+ ++P P P G
Sbjct: 28 DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP-------PKGY 80
Query: 71 FMTQ 74
F+T+
Sbjct: 81 FLTK 84
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 39 PFAGGYYYGKIKFPPE----YPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESWN 90
P G Y YG I F + YP +PP ++ + PN + +CL++ E W+
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPN--IDLKGNVCLNI---LREDWS 126
Query: 91 PMWSVSSILTGLLSFMMD 108
P + SI+TGLL ++
Sbjct: 127 PALDLQSIITGLLFLFLE 144
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 27 EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGI----LMITPNGRFMTQKKLCLSMS 82
++ + G NGT + GG + + P +YP+ P I ++ PN +CL
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD-EASGSVCL--- 85
Query: 83 DFHPESWNPMWSVSSILTGLL 103
D ++W P++S+ ++ L
Sbjct: 86 DVINQTWTPLYSLVNVFEVFL 106
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 34 GSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESW 89
G GTP+ GG + ++ P +YP+K P I + PN +CL D ++W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID-EASGTVCL---DVINQTW 114
Query: 90 NPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPAFRKLFPEYVE 149
++ +++I L ++ A+ + + +++ EY++
Sbjct: 115 TALYDLTNIFESFLPQLLAYPNPIDPLN---------GDAAAMYLHRPEEYKQKIKEYIQ 165
Query: 150 KY-NEQQLAEQ 159
KY E+ L EQ
Sbjct: 166 KYATEEALKEQ 176
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.2 bits (69), Expect = 0.51, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 89 WNPMWSVSSILTGLLSFMMDXXXXXXXXXXXXEEKQRLAKASLAFNCKNPAFRKLFPEYV 148
W M+ V + G+ SF+M +A SL + +N FR + +++
Sbjct: 796 WALMFLVLAAAQGICSFLMTFFMG-------------IASESLTRDLRNKLFRNVLSQHI 842
Query: 149 EKYNEQQLAEQRVSEQLSPESPN 171
++ Q A ++S +L+ + PN
Sbjct: 843 GFFDSPQNASGKISTRLATDVPN 865
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 25/112 (22%)
Query: 12 PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKF----PPEYPYKPPGILMIT- 66
P + V P PN + + + TP G Y GK +F P Y PP + +T
Sbjct: 31 PCTCKVHFPDPNKLHCFQLTV-----TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK 85
Query: 67 ---PNGRFMTQKKLCLSMSDFHP---ESWNP-------MWSVSSILTGLLSF 105
PN ++CLS+ H W P +W ++S+ T LL+F
Sbjct: 86 IWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 25/112 (22%)
Query: 12 PVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKF----PPEYPYKPPGILMIT- 66
P + V P PN + + + TP G Y GK +F P Y PP + +T
Sbjct: 31 PCTCKVHFPDPNKLHCFQLTV-----TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK 85
Query: 67 ---PNGRFMTQKKLCLSMSDFHP---ESWNP-------MWSVSSILTGLLSF 105
PN ++CLS+ H W P +W ++S+ T LL+F
Sbjct: 86 IWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 41 AGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM-SDFHPESWNPMWSVSS 97
AG Y + F +YP++PP + +TP + + +C M +DF W P S
Sbjct: 67 AGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDF----WTPDQHASD 122
Query: 98 ILTGLLS 104
++ +L
Sbjct: 123 VIKLVLD 129
>pdb|3ZF7|EE Chain e, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 260
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 21/89 (23%)
Query: 2 GNGCFYHVQEPVSHVVARPSPNDILEW---HYVLEG---------SNGTPFAGGYYYGKI 49
GNG Y V H P+ IL++ H + G G P A ++
Sbjct: 11 GNGSVYQVH---GHKRLGPAKLRILDYAERHGFMRGVVKAIEHEPGRGAPLA------RV 61
Query: 50 KFPPEYPYKPPGILMITPNGRFMTQKKLC 78
+F Y Y+ LM+ P G F Q LC
Sbjct: 62 EFRHPYKYRRVKELMVAPEGMFTGQSMLC 90
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 8 HVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
+V E VS + + W + G GT F Y I YP PP + T
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 68 NGRFMTQKKLCLSMSDFHP-ESWNPMWSVSSILTGLLSFMM 107
+ ++ H ++WN +++ +IL L M+
Sbjct: 97 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEML 137
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 8 HVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67
+V E VS + + W + G GT F Y I YP PP + T
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 68 NGRFMTQKKLCLSMSDFHP-ESWNPMWSVSSILTGLLSFMM 107
+ ++ H ++WN +++ +IL L M+
Sbjct: 101 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEML 141
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 121 EEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ---QLAEQRVSEQLS 166
E+ + +A++S + NC NP+ +P ++ Y+ + L EQ+ ++
Sbjct: 519 EQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVT 567
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,230,716
Number of Sequences: 62578
Number of extensions: 300435
Number of successful extensions: 709
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 116
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)