Query 027085
Match_columns 228
No_of_seqs 206 out of 1547
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0894 Ubiquitin-protein liga 100.0 4.1E-48 9E-53 322.5 17.0 227 2-228 11-243 (244)
2 KOG0417 Ubiquitin-protein liga 100.0 1.9E-43 4.1E-48 280.9 10.2 137 4-153 9-147 (148)
3 COG5078 Ubiquitin-protein liga 100.0 2.3E-41 5E-46 273.8 12.0 138 3-153 12-152 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 7.1E-39 1.5E-43 260.6 13.1 139 2-153 8-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.9E-38 4.2E-43 256.8 13.0 138 2-152 7-146 (147)
6 KOG0419 Ubiquitin-protein liga 100.0 9.3E-38 2E-42 242.5 10.7 134 6-152 14-149 (152)
7 KOG0424 Ubiquitin-protein liga 100.0 9.7E-34 2.1E-38 223.1 12.1 135 8-153 16-157 (158)
8 KOG0425 Ubiquitin-protein liga 100.0 2.4E-33 5.2E-38 223.8 12.5 139 6-154 15-166 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 9.2E-34 2E-38 226.8 8.8 134 3-148 4-140 (140)
10 KOG0421 Ubiquitin-protein liga 100.0 2.3E-33 4.9E-38 221.0 7.1 135 3-151 36-172 (175)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.1E-32 2.3E-37 221.0 10.9 133 3-148 6-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 5.5E-32 1.2E-36 217.8 13.0 138 3-152 5-145 (145)
13 KOG0418 Ubiquitin-protein liga 100.0 1.5E-32 3.3E-37 225.1 9.1 129 13-155 23-155 (200)
14 KOG0426 Ubiquitin-protein liga 100.0 1.2E-30 2.6E-35 203.0 10.9 135 7-151 15-162 (165)
15 KOG0416 Ubiquitin-protein liga 100.0 1.3E-29 2.8E-34 204.8 10.4 132 14-159 18-154 (189)
16 KOG0423 Ubiquitin-protein liga 100.0 7.9E-30 1.7E-34 206.6 6.4 138 7-157 21-160 (223)
17 KOG0422 Ubiquitin-protein liga 100.0 3.1E-29 6.8E-34 196.7 8.0 140 4-156 10-152 (153)
18 KOG0428 Non-canonical ubiquiti 99.9 3.9E-27 8.4E-32 200.3 10.8 127 10-136 24-151 (314)
19 KOG0420 Ubiquitin-protein liga 99.9 7.5E-27 1.6E-31 189.1 7.4 129 12-154 42-176 (184)
20 KOG0427 Ubiquitin conjugating 99.9 1.5E-23 3.3E-28 163.2 8.5 104 2-109 21-127 (161)
21 KOG0429 Ubiquitin-conjugating 99.8 4.2E-18 9.1E-23 143.3 10.9 139 6-157 29-174 (258)
22 KOG0895 Ubiquitin-conjugating 99.6 2.8E-16 6E-21 155.8 5.4 108 6-113 861-976 (1101)
23 KOG0895 Ubiquitin-conjugating 99.5 1.1E-13 2.5E-18 137.5 8.4 110 2-111 288-407 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 1.3E-10 2.8E-15 91.4 5.5 83 25-108 38-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.4 7.3E-07 1.6E-11 68.5 5.3 64 45-110 13-79 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.0 6.6E-06 1.4E-10 65.4 4.6 68 41-108 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.0 1.1E-05 2.4E-10 63.3 5.0 78 24-109 31-118 (121)
28 KOG2391 Vacuolar sorting prote 96.8 0.0025 5.4E-08 57.8 6.1 82 24-113 51-142 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.1 0.036 7.9E-07 43.6 7.7 91 14-106 12-119 (122)
30 PF08694 UFC1: Ubiquitin-fold 93.4 0.096 2.1E-06 42.2 3.6 53 45-99 77-135 (161)
31 smart00591 RWD domain in RING 92.3 0.78 1.7E-05 33.8 7.2 26 42-67 40-65 (107)
32 PF05773 RWD: RWD domain; Int 92.0 0.28 6.2E-06 36.5 4.4 45 23-67 27-73 (113)
33 PF14457 Prok-E2_A: Prokaryoti 90.6 0.23 5.1E-06 40.9 2.9 65 42-108 49-126 (162)
34 KOG3357 Uncharacterized conser 81.1 1.2 2.7E-05 35.4 2.3 73 25-99 50-138 (167)
35 KOG0309 Conserved WD40 repeat- 52.2 41 0.00089 34.4 6.4 42 25-67 448-491 (1081)
36 cd00421 intradiol_dioxygenase 51.4 17 0.00036 29.1 3.1 26 41-66 64-90 (146)
37 cd03457 intradiol_dioxygenase_ 50.1 18 0.00038 30.5 3.2 26 41-66 85-110 (188)
38 KOG4018 Uncharacterized conser 49.6 16 0.00036 31.4 2.9 24 44-67 50-73 (215)
39 cd03459 3,4-PCD Protocatechuat 40.0 32 0.0007 28.0 3.1 26 41-66 71-101 (158)
40 PF06113 BRE: Brain and reprod 37.0 56 0.0012 30.0 4.5 27 39-65 61-87 (333)
41 PF03366 YEATS: YEATS family; 31.3 1.4E+02 0.0031 21.6 5.1 40 26-67 2-41 (84)
42 TIGR02423 protocat_alph protoc 31.1 51 0.0011 27.9 3.0 25 41-65 95-124 (193)
43 cd03463 3,4-PCD_alpha Protocat 28.8 59 0.0013 27.3 3.0 24 42-65 92-120 (185)
44 PRK11700 hypothetical protein; 26.1 1.5E+02 0.0032 25.1 4.9 50 43-101 110-184 (187)
45 PF09765 WD-3: WD-repeat regio 24.4 75 0.0016 28.6 3.0 64 22-106 122-186 (291)
46 KOG1047 Bifunctional leukotrie 23.2 67 0.0014 31.7 2.6 28 39-67 249-279 (613)
47 PF06113 BRE: Brain and reprod 22.8 80 0.0017 29.1 2.9 23 44-66 307-329 (333)
48 TIGR02439 catechol_proteo cate 21.0 99 0.0021 27.8 3.1 16 41-56 179-194 (285)
No 1
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-48 Score=322.51 Aligned_cols=227 Identities=56% Similarity=0.954 Sum_probs=197.4
Q ss_pred CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccC
Q 027085 2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSM 81 (228)
Q Consensus 2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~ 81 (228)
+++-..|+++|+++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||++|||+||.|+++|||++|-.+-++||++
T Consensus 11 ~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktntRLCLSi 90 (244)
T KOG0894|consen 11 QKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNTRLCLSI 90 (244)
T ss_pred HHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecCceEEEec
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhhhh
Q 027085 82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQRV 161 (228)
Q Consensus 82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~~~ 161 (228)
.++|++.|+|.|++.+||.+|.++|.+..|..++++....+++.+|+.|+.|+++...|++++.|+|++|.+++.+++..
T Consensus 91 SDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~nq~~~a~~~a 170 (244)
T KOG0894|consen 91 SDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLKNPKFCELFPEVVEEYNQEQLAKQAA 170 (244)
T ss_pred cccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhccCChHHHHHhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887633
Q ss_pred cccC-CCCC---CCCCCCCcccccc-CCCCCCCCcCCchHhhhccCC-CCchHHHHHHHHHHHHHhhhccCCC
Q 027085 162 SEQL-SPES---PNEENSRPKVEKV-GSGEDMKTIDTPKEARKNRKQ-SFPTWMLLLLVSIFGIVMALPLLQL 228 (228)
Q Consensus 162 ~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~pl~~~ 228 (228)
+.+. .+++ +......+..++. ..+....-..+++..+++.++ -+|.|.++.++++||++|++||++|
T Consensus 171 ~~~~t~~e~~~~p~~~~~~v~~e~~l~~~~~~~a~~~l~~~~~n~k~~gl~~~~~~~~~v~~g~a~~~~~~~~ 243 (244)
T KOG0894|consen 171 AVQGTTPEANGVPAAEFALVENEEILDLGHGRGAEGGLKNLPFNSKQDGLPGWALLALLVFFGFAAALPLVQL 243 (244)
T ss_pred cccCCCcCcccCcchhhhccCccceecCCcccccchhhccccccchhccccchhHHHHHHHHHHHHHHhhhcc
Confidence 2222 1222 2222333333333 333333344577888888888 7899999999999999999999986
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=280.93 Aligned_cols=137 Identities=23% Similarity=0.602 Sum_probs=129.0
Q ss_pred cchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccC
Q 027085 4 GCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSM 81 (228)
Q Consensus 4 ~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~ 81 (228)
+--.|++++++||.+.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+ |+||++.|+||+|+
T Consensus 9 E~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDI 88 (148)
T KOG0417|consen 9 ELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDI 88 (148)
T ss_pred HHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHh
Confidence 3346789999999999999999999999999999999999999999999999999999999997 67789999999999
Q ss_pred CCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085 82 SDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 153 (228)
Q Consensus 82 L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~ 153 (228)
|+ +.|+|+++|..||++|++||.+|||+++ +.++.|. +|++|++.|.++||+||++||.
T Consensus 89 Lk---~~WsPAl~i~~VllsI~sLL~~PnpddP-L~~~ia~---------~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 89 LK---DQWSPALTISKVLLSICSLLSDPNPDDP-LVPDIAE---------LYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred hh---ccCChhhHHHHHHHHHHHHhcCCCCCcc-ccHHHHH---------HHHhhHHHHHHHHHHHHHHHhc
Confidence 98 8899999999999999999999999999 6677665 8999999999999999999986
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=273.81 Aligned_cols=138 Identities=25% Similarity=0.606 Sum_probs=129.3
Q ss_pred ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085 3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL 79 (228)
Q Consensus 3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl 79 (228)
++.-.+++++++||++.|..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+ |+||+.+|+||+
T Consensus 12 kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCL 91 (153)
T COG5078 12 KELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCL 91 (153)
T ss_pred HHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChh
Confidence 344567888999999999888 99999999999999999999999999999999999999999997 677899999999
Q ss_pred cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 153 (228)
Q Consensus 80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~ 153 (228)
++|+ ++|+|+++|++||++|++||.+||+++| ++.++|+ +|++|+++|.+++|+++++|+.
T Consensus 92 dIL~---~~WsP~~~l~sILlsl~slL~~PN~~~P-ln~daa~---------~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 92 DILK---DRWSPVYTLETILLSLQSLLLSPNPDSP-LNTEAAT---------LYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HHHh---CCCCccccHHHHHHHHHHHHcCCCCCCC-CChHHHH---------HHHhCHHHHHHHHHHHHHHhcc
Confidence 9998 9999999999999999999999999998 7777776 8999999999999999999975
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.1e-39 Score=260.59 Aligned_cols=139 Identities=22% Similarity=0.566 Sum_probs=130.0
Q ss_pred CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085 2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL 79 (228)
Q Consensus 2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl 79 (228)
+.+.-.+++++++||.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+ |+||+.+|.||+
T Consensus 8 ~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl 87 (152)
T PTZ00390 8 EKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICL 87 (152)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEEC
Confidence 345667888999999999999999999999999999999999999999999999999999999996 677899999999
Q ss_pred cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 153 (228)
Q Consensus 80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~ 153 (228)
++|+ +.|+|++||.+||++|+++|.+|+++++ ++.++|+ +|++|++.|.++|++|+++|+.
T Consensus 88 ~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~p-ln~~aa~---------~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 88 DILK---DKWSPALQIRTVLLSIQALLSAPEPDDP-LDTSVAD---------HFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred ccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHHhc
Confidence 9997 8999999999999999999999999998 6766665 8999999999999999999997
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-38 Score=256.76 Aligned_cols=138 Identities=25% Similarity=0.594 Sum_probs=128.7
Q ss_pred CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085 2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL 79 (228)
Q Consensus 2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl 79 (228)
+++.-.+++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |+||+.+|.||+
T Consensus 7 ~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl 86 (147)
T PLN00172 7 QKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICL 86 (147)
T ss_pred HHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEc
Confidence 345567889999999999999999999999999999999999999999999999999999999996 677999999999
Q ss_pred cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN 152 (228)
Q Consensus 80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a 152 (228)
++|+ +.|+|+++|++||.+|+++|.+|+++++ ++.++|+ +|.+|++.|.++|++|+++|+
T Consensus 87 ~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p-~n~~aa~---------~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 87 DILR---DQWSPALTVSKVLLSISSLLTDPNPDDP-LVPEIAR---------VFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred ccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCc-hHHHHHH---------HHHHCHHHHHHHHHHHHHHhh
Confidence 9997 8999999999999999999999999997 6666665 899999999999999999997
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-38 Score=242.54 Aligned_cols=134 Identities=28% Similarity=0.588 Sum_probs=125.4
Q ss_pred hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCC
Q 027085 6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSD 83 (228)
Q Consensus 6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~ 83 (228)
-.++++|+.||+..|.++|+++|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+- |+|||.+|.+|+++|+
T Consensus 14 krlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLq 93 (152)
T KOG0419|consen 14 KRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ 93 (152)
T ss_pred HHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHh
Confidence 36799999999999999999999999999999999999999999999999999999999993 6779999999999998
Q ss_pred CCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085 84 FHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN 152 (228)
Q Consensus 84 ~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a 152 (228)
..|+|.|++..||++||+||.+|||+.| .|.++|+ +|++|+.+|.+.+++.+++..
T Consensus 94 ---NrWsp~Ydva~ILtsiQslL~dPn~~sP-aN~eAA~---------Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 94 ---NRWSPTYDVASILTSIQSLLNDPNPNSP-ANSEAAR---------LFSENKREYERRVKETVEQSW 149 (152)
T ss_pred ---cCCCCchhHHHHHHHHHHHhcCCCCCCc-ccHHHHH---------HHhhChHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999998 6666664 999999999999999988754
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-34 Score=223.08 Aligned_cols=135 Identities=21% Similarity=0.482 Sum_probs=120.7
Q ss_pred hhhCCCCCEEEeeCC-----CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085 8 HVQEPVSHVVARPSP-----NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS 80 (228)
Q Consensus 8 l~~~p~~gi~v~p~~-----~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~ 80 (228)
..++.+-|+++.|.. .|++.|+|.|.|+.||+||||.|.+.+.||++||+.||+++|.+| |+|||.+|.|||+
T Consensus 16 wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLs 95 (158)
T KOG0424|consen 16 WRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLS 95 (158)
T ss_pred HhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehh
Confidence 467788999999853 479999999999999999999999999999999999999999998 7889999999999
Q ss_pred CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHh
Q 027085 81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNE 153 (228)
Q Consensus 81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~ 153 (228)
+|+- ..+|+|+.||.+||.+|+.||.+||+.++ .+. +| ..+|..|+..|.+++|.++++|+.
T Consensus 96 iL~e-~~~W~paitikqiL~gIqdLL~~Pn~~~p-Aq~-eA--------~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 96 ILNE-EKDWRPAITIKQILLGIQDLLDTPNITSP-AQT-EA--------YTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hhcc-ccCCCchhhHHHHHHHHHHHhcCCCCCCc-hhh-HH--------HHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9982 13599999999999999999999999986 333 33 248999999999999999999875
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=223.77 Aligned_cols=139 Identities=22% Similarity=0.481 Sum_probs=123.2
Q ss_pred hhhhhCCCCCEEEeeCC-CCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCC
Q 027085 6 FYHVQEPVSHVVARPSP-NDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMS 82 (228)
Q Consensus 6 ~~l~~~p~~gi~v~p~~-~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L 82 (228)
-.|+++|.+|+.+...+ .|+++|.+.|+||++|+||||.|+..+.||.+||+.||+++|+|. |+|||.+|+||++||
T Consensus 15 k~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISIL 94 (171)
T KOG0425|consen 15 KELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISIL 94 (171)
T ss_pred HHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEee
Confidence 45789999999998755 599999999999999999999999999999999999999999994 666999999999999
Q ss_pred CC----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085 83 DF----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN 152 (228)
Q Consensus 83 ~~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a 152 (228)
.- ..+.|.|..|+++||++|.++|.+||-++| .|-+||. +|++++++|+++++.+|++..
T Consensus 95 H~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SP-ANVDAa~---------~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 95 HPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESP-ANVDAAK---------EWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred cCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCc-cchHHHH---------HHhhCHHHHHHHHHHHHHHHH
Confidence 62 136999999999999999999999888886 4555543 899999999999999999866
Q ss_pred hh
Q 027085 153 EQ 154 (228)
Q Consensus 153 ~~ 154 (228)
+.
T Consensus 165 e~ 166 (171)
T KOG0425|consen 165 EE 166 (171)
T ss_pred Hh
Confidence 54
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.2e-34 Score=226.77 Aligned_cols=134 Identities=29% Similarity=0.689 Sum_probs=118.0
Q ss_pred ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085 3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL 79 (228)
Q Consensus 3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl 79 (228)
++.-.++++++.|+.+.+.++ |+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|.|+ |+||+.+|.||+
T Consensus 4 ~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl 83 (140)
T PF00179_consen 4 KELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICL 83 (140)
T ss_dssp HHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGH
T ss_pred HHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchh
Confidence 455678899999999999886 99999999999999999999999999999999999999999995 778999999999
Q ss_pred cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 027085 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV 148 (228)
Q Consensus 80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v 148 (228)
++|+ .+.|+|+++|.+||.+|+++|.+|+++++ .+.++++ +|.+|++.|.++||+|.
T Consensus 84 ~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~-~n~~a~~---------~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 84 DILN--PESWSPSYTIESILLSIQSLLSEPNPEDP-LNEEAAE---------LYKNDREEFEKKAREWA 140 (140)
T ss_dssp GGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTST-SSHHHHH---------HHHHCHHHHHHHHHHH-
T ss_pred hhhh--cccCCcccccccHHHHHHHHHhCCCCCCc-chHHHHH---------HHHHCHHHHHHHHHHcC
Confidence 9987 34699999999999999999999998887 6666665 89999999999999984
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=221.02 Aligned_cols=135 Identities=20% Similarity=0.496 Sum_probs=122.3
Q ss_pred ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085 3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS 80 (228)
Q Consensus 3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~ 80 (228)
++...|+-...+||++.|+.||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|| |+||+..|.|||+
T Consensus 36 ~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLD 115 (175)
T KOG0421|consen 36 SELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLD 115 (175)
T ss_pred HHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHH
Confidence 44455666678999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085 81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 151 (228)
Q Consensus 81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~ 151 (228)
||+ +.|+..|++++||++||+||-+||-.+| +|..+|+ ++. |.++|++...++-+++
T Consensus 116 ILk---dKWSa~YdVrTILLSiQSLLGEPNn~SP-LNaqAAe---------lW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 116 ILK---DKWSAVYDVRTILLSIQSLLGEPNNSSP-LNAQAAE---------LWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred HHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCc-chhHHHH---------Hhc-CHHHHHHHHHHHhhcc
Confidence 998 9999999999999999999999999998 7777775 776 9999999887776653
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.1e-32 Score=220.99 Aligned_cols=133 Identities=27% Similarity=0.615 Sum_probs=121.3
Q ss_pred ccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085 3 NGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS 80 (228)
Q Consensus 3 ~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~ 80 (228)
++.-.+++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |++|+.+|.||++
T Consensus 6 ~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~ 85 (141)
T cd00195 6 KELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLS 85 (141)
T ss_pred HHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchh
Confidence 45556788999999999999999999999999999999999999999999999999999999984 7778999999999
Q ss_pred CCCCCCCC-CCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 027085 81 MSDFHPES-WNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYV 148 (228)
Q Consensus 81 ~L~~~~~~-W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v 148 (228)
+|. .+ |+|+++|.+||.+|+++|.+|+++++ .|.++|+ +|.+|++.|.++|++|+
T Consensus 86 ~l~---~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~~aa~---------~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 86 ILK---THGWSPAYTLRTVLLSLQSLLNEPNPSDP-LNAEAAK---------LYKENREEFKKKAREWT 141 (141)
T ss_pred hcC---CCCcCCcCcHHHHHHHHHHHHhCCCCCCc-hhHHHHH---------HHHHCHHHHHHHHHHhC
Confidence 997 55 99999999999999999999999887 6666654 89999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.98 E-value=5.5e-32 Score=217.79 Aligned_cols=138 Identities=27% Similarity=0.619 Sum_probs=125.1
Q ss_pred ccchhhhhCCCCCEEEeeCCC-CceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEec
Q 027085 3 NGCFYHVQEPVSHVVARPSPN-DILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCL 79 (228)
Q Consensus 3 ~~~~~l~~~p~~gi~v~p~~~-dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl 79 (228)
.+.-.+++++++|+++.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.|+ |++|+.+|.||+
T Consensus 5 ~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl 84 (145)
T smart00212 5 KELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICL 84 (145)
T ss_pred HHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEeh
Confidence 345567888999999999775 99999999999999999999999999999999999999999997 788999999999
Q ss_pred cCCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 027085 80 SMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYN 152 (228)
Q Consensus 80 ~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a 152 (228)
++|. .++|+|++++.+||.+|+++|.+|+++++ .|.+++. +|.++++.|.++|+++++||+
T Consensus 85 ~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~-~n~eaa~---------~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 85 DILK--QEKWSPATTLETVLLSIQSLLSEPNPDSP-LNADAAT---------LYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred hhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCc-ccHHHHH---------HHHHCHHHHHHHHHHHHHHhC
Confidence 9985 26999999999999999999999999887 5655554 899999999999999999874
No 13
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.5e-32 Score=225.12 Aligned_cols=129 Identities=21% Similarity=0.449 Sum_probs=117.3
Q ss_pred CCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccCCCCCCCC
Q 027085 13 VSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPES 88 (228)
Q Consensus 13 ~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~L~~~~~~ 88 (228)
-.||.+...++|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.| ||+. ..+|.||+++|+ +.
T Consensus 23 q~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVS-s~tGaICLDilk---d~ 98 (200)
T KOG0418|consen 23 QAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVS-SQTGAICLDILK---DQ 98 (200)
T ss_pred hcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCC-cccccchhhhhh---cc
Confidence 579999999999999999999999999999999999999999999999999999 6653 567999999998 99
Q ss_pred CCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Q 027085 89 WNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQ 155 (228)
Q Consensus 89 W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~ 155 (228)
|.+++|++.+|++||++|..|+|.+|. .| ..| ..|.+|++.|.+.||.|+..||...
T Consensus 99 Wa~slTlrtvLislQalL~~pEp~dPq----Da---vva---~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 99 WAASLTLRTVLISLQALLCAPEPKDPQ----DA---VVA---EQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCCChH----HH---HHH---HHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999983 12 122 2799999999999999999999873
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=203.00 Aligned_cols=135 Identities=24% Similarity=0.548 Sum_probs=120.0
Q ss_pred hhhhCCCCCEEEee-CCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCC
Q 027085 7 YHVQEPVSHVVARP-SPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSD 83 (228)
Q Consensus 7 ~l~~~p~~gi~v~p-~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~ 83 (228)
+|.+++|+||.+.| ++||.++|.+.|.||+||+|+||+|.-++.||.|||..||+++|..- |+||+.+|+||+++|.
T Consensus 15 qLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILH 94 (165)
T KOG0426|consen 15 QLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 94 (165)
T ss_pred HHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEee
Confidence 56789999999998 57889999999999999999999999999999999999999999872 5669999999999996
Q ss_pred C----------CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q 027085 84 F----------HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKY 151 (228)
Q Consensus 84 ~----------~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~ 151 (228)
. ..+.|+|..+++.||+++.++|.+||-+++ .|..++ .++++|+++|.+.++..+.|.
T Consensus 95 aPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESg-ANvdA~---------~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 95 APGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESG-ANVDAC---------KMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred CCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccC-cccHHH---------HHHHHhHHHHHHHHHHHHHHh
Confidence 2 236999999999999999999999888776 454444 389999999999999998874
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=204.81 Aligned_cols=132 Identities=20% Similarity=0.502 Sum_probs=121.2
Q ss_pred CCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccCCCCCCCCC
Q 027085 14 SHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSMSDFHPESW 89 (228)
Q Consensus 14 ~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~L~~~~~~W 89 (228)
.+..|...++++.++++.+.||.+||||||+|+++|.+|++||++.|+|.|.| ||++ ..+|.|||++++ ..|
T Consensus 18 s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID-e~SGsVCLDViN---QtW 93 (189)
T KOG0416|consen 18 SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID-EASGSVCLDVIN---QTW 93 (189)
T ss_pred cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch-hccCccHHHHHh---hhh
Confidence 56788888999999999999999999999999999999999999999999999 6665 567999999998 999
Q ss_pred CCCcchHHHHHh-hhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhhhh
Q 027085 90 NPMWSVSSILTG-LLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLAEQ 159 (228)
Q Consensus 90 ~p~~~i~~vL~~-i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~~~ 159 (228)
+|.|++..|+.. |-+||..|||.+| +|.+||+ +|..+++.|++++++|++|||.+....+
T Consensus 94 Sp~yDL~NIfetfLPQLL~YPNp~DP-LN~eAAa---------l~l~~~~~Y~~~v~eY~~kYA~~~~~~~ 154 (189)
T KOG0416|consen 94 SPLYDLVNIFETFLPQLLRYPNPSDP-LNGEAAA---------LYLRDPEEYEEKVKEYIKKYATPEALKE 154 (189)
T ss_pred hHHHHHHHHHHHHhHHHhcCCCCCCC-cccHHHH---------HHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence 999999999965 8899999999999 8888886 8999999999999999999998776544
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-30 Score=206.57 Aligned_cols=138 Identities=17% Similarity=0.376 Sum_probs=126.9
Q ss_pred hhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCC
Q 027085 7 YHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDF 84 (228)
Q Consensus 7 ~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~ 84 (228)
-+-..||.||.|.++++|+++..+.|.||.||||++|+|++++.+..|||..||+-+|+|. |+||..+|+||++.|+
T Consensus 21 ~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLK- 99 (223)
T KOG0423|consen 21 SLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLK- 99 (223)
T ss_pred hcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhh-
Confidence 3556799999999999999999999999999999999999999999999999999999994 5668999999999998
Q ss_pred CCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085 85 HPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA 157 (228)
Q Consensus 85 ~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~ 157 (228)
.+|+|.+.|++||+.|.|||..|+|++. +|.+++. +..+++++|.++||.|++.|+.....
T Consensus 100 --kDW~p~LGirHvLltikCLLI~PnPESA-LNEeAGk---------mLLEnYdeYa~rARl~TeIHa~p~~~ 160 (223)
T KOG0423|consen 100 --KDWNPSLGIRHVLLTIKCLLIEPNPESA-LNEEAGK---------MLLENYDEYARRARLYTEIHAKPKPK 160 (223)
T ss_pred --cccCcccchhhHhhhhheeeecCChHHH-HhHHHHH---------HHHHhHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999999997 6666654 77889999999999999999987443
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=196.66 Aligned_cols=140 Identities=23% Similarity=0.455 Sum_probs=122.3
Q ss_pred cchhhhhCCCCCEE-EeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEecc
Q 027085 4 GCFYHVQEPVSHVV-ARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLS 80 (228)
Q Consensus 4 ~~~~l~~~p~~gi~-v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~ 80 (228)
+.-.|+++....+. +..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|+|.|. |+||++.|.||+.
T Consensus 10 EL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClP 88 (153)
T KOG0422|consen 10 ELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLP 88 (153)
T ss_pred HHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeee
Confidence 34455666665444 4557889999999999 788999999999999999999999999999994 5668999999999
Q ss_pred CCCCCCCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhh
Q 027085 81 MSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQL 156 (228)
Q Consensus 81 ~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~ 156 (228)
++. .++|+|+.++.+||++|..++.+|+|+.+ +..+.|+ +|.+|+..|.++|.++++||++++.
T Consensus 89 iis--~EnWkP~T~teqVlqaLi~liN~P~pe~p-lr~dlA~---------ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 89 IIS--AENWKPATRTEQVLQALIALINDPEPEHP-LRIDLAE---------EYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred eee--cccccCcccHHHHHHHHHHHhcCCCcccc-chhhHHH---------HHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 987 49999999999999999999999999998 6666655 8999999999999999999997653
No 18
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-27 Score=200.34 Aligned_cols=127 Identities=44% Similarity=0.965 Sum_probs=120.0
Q ss_pred hCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCCCCCCCCC
Q 027085 10 QEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESW 89 (228)
Q Consensus 10 ~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L~~~~~~W 89 (228)
++|...+.+.|.+||+++||++|.||.||-||||+|+.+|.||.|||++||.+..+|||++|..+.+|||+|.++|++.|
T Consensus 24 ~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~nkKiCLSISgyHPEtW 103 (314)
T KOG0428|consen 24 KDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVNKKICLSISGYHPETW 103 (314)
T ss_pred cCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeCceEEEEecCCCcccc
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHhhhccc-cCCCCCCCCCCChHHHHHHHHHHHHHhccC
Q 027085 90 NPMWSVSSILTGLLSFM-MDTSPTTGSVNTTTEEKQRLAKASLAFNCK 136 (228)
Q Consensus 90 ~p~~~i~~vL~~i~~ll-~~p~p~~~~~~~~~a~~~~la~~s~~~~~~ 136 (228)
.|+|+|++.|++|..+| ..|+-..+++.....+|+.||+.|+.|.|.
T Consensus 104 qPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck 151 (314)
T KOG0428|consen 104 QPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCK 151 (314)
T ss_pred CcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCcc
Confidence 99999999999999998 445666778889999999999999999887
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.5e-27 Score=189.15 Aligned_cols=129 Identities=21% Similarity=0.434 Sum_probs=112.5
Q ss_pred CCCCEEEe-e-CCCCce--EEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC--CceecCCCeEeccCCCCC
Q 027085 12 PVSHVVAR-P-SPNDIL--EWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP--NGRFMTQKKLCLSMSDFH 85 (228)
Q Consensus 12 p~~gi~v~-p-~~~dl~--~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP--n~~v~~~G~iCl~~L~~~ 85 (228)
-|++++.. + +.+|+. +++++|. |.++.|+||.|+|++.+|+.||++||+|+|+|. |+||+.+|+|||+||.
T Consensus 42 Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILR-- 118 (184)
T KOG0420|consen 42 LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILR-- 118 (184)
T ss_pred CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHH--
Confidence 44556532 2 245544 5999999 888899999999999999999999999999994 6668999999999998
Q ss_pred CCCCCCCcchHHHHHhhhccccCCCCCCCCCCChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhh
Q 027085 86 PESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQ 154 (228)
Q Consensus 86 ~~~W~p~~~i~~vL~~i~~ll~~p~p~~~~~~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~ 154 (228)
++|+|..+|.+|+.+|+.||.+|+++|| +|.+||+ .+..|++.|...+|.+...+...
T Consensus 119 -edW~P~lnL~sIi~GL~~LF~epn~eDp-LN~eAA~---------~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 119 -EDWRPVLNLNSIIYGLQFLFLEPNPEDP-LNKEAAA---------VLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred -hcCccccchHHHHHHHHHHhccCCCccc-ccHHHHH---------HHHhCHHHHHHHHHHHHhcCccC
Confidence 9999999999999999999999999998 8888887 88999999999999998877643
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-23 Score=163.19 Aligned_cols=104 Identities=23% Similarity=0.533 Sum_probs=97.7
Q ss_pred CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEe
Q 027085 2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLC 78 (228)
Q Consensus 2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iC 78 (228)
+++...+|.+||+|+... ..||+.+|.+-+.|-+||.|+|.+|.+.+.||+.||++.|.|.|..| |++||++|.||
T Consensus 21 qKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHIC 99 (161)
T KOG0427|consen 21 QKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHIC 99 (161)
T ss_pred HHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEE
Confidence 566778899999999888 78899999999999999999999999999999999999999999995 78899999999
Q ss_pred ccCCCCCCCCCCCCcchHHHHHhhhccccCC
Q 027085 79 LSMSDFHPESWNPMWSVSSILTGLLSFMMDT 109 (228)
Q Consensus 79 l~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p 109 (228)
|++|. ++|+|++++.+|.++|.++|..-
T Consensus 100 L~iL~---d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 100 LDILY---DSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred EEeec---ccCCcchhhHHHHHHHHHHHccC
Confidence 99998 99999999999999999999764
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.2e-18 Score=143.28 Aligned_cols=139 Identities=19% Similarity=0.290 Sum_probs=116.1
Q ss_pred hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCC--CCCceeecCC--Ccee-cCCCeEecc
Q 027085 6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPY--KPPGILMITP--NGRF-MTQKKLCLS 80 (228)
Q Consensus 6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~--~pP~v~F~tP--n~~v-~~~G~iCl~ 80 (228)
+.+.+++.+||+|.|+..|-+.|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.++ |++| ..++.+|++
T Consensus 29 ~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ 107 (258)
T KOG0429|consen 29 VLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLN 107 (258)
T ss_pred HHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHh
Confidence 45677899999999999999999999999887 8999999999999999995 4599999994 3333 456889997
Q ss_pred CCCCCCCCCCC-CcchHHHHHhhhccccCCCCCCCCC-CChHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhhh
Q 027085 81 MSDFHPESWNP-MWSVSSILTGLLSFMMDTSPTTGSV-NTTTEEKQRLAKASLAFNCKNPAFRKLFPEYVEKYNEQQLA 157 (228)
Q Consensus 81 ~L~~~~~~W~p-~~~i~~vL~~i~~ll~~p~p~~~~~-~~~~a~~~~la~~s~~~~~~~~~f~~~ar~~v~k~a~~~~~ 157 (228)
-. . ..|+- ..+|++||..||.+|.+|+-..+.+ |.+|+. +|.+++++|+++++++++....-..+
T Consensus 108 ra--f-~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~---------l~~k~r~ef~~rvqe~vk~sr~~iyD 174 (258)
T KOG0429|consen 108 RA--F-PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAV---------LYKKHRDEFRERVQECVKASRSMIYD 174 (258)
T ss_pred hh--h-hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHH---------HHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 42 2 45976 7889999999999999988777745 455544 89999999999999999988765444
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.8e-16 Score=155.79 Aligned_cols=108 Identities=24% Similarity=0.464 Sum_probs=96.8
Q ss_pred hhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecC----CCceecCCCeEeccC
Q 027085 6 FYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMIT----PNGRFMTQKKLCLSM 81 (228)
Q Consensus 6 ~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~t----Pn~~v~~~G~iCl~~ 81 (228)
..|..+-+.||+|+-.++-+.-..++|.||.||||++|.|.|.|.||.+||..||.+++.+ =|+|.|.+|+||+++
T Consensus 861 ~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~ 940 (1101)
T KOG0895|consen 861 KILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSL 940 (1101)
T ss_pred HhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhh
Confidence 3566778899999999999888999999999999999999999999999999999999998 267799999999999
Q ss_pred CCCC----CCCCCCCcchHHHHHhhhccccCCCCCC
Q 027085 82 SDFH----PESWNPMWSVSSILTGLLSFMMDTSPTT 113 (228)
Q Consensus 82 L~~~----~~~W~p~~~i~~vL~~i~~ll~~p~p~~ 113 (228)
|+.. .+.|+|+-+|.+||.+||.|..+..|.-
T Consensus 941 l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ 976 (1101)
T KOG0895|consen 941 LNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYF 976 (1101)
T ss_pred hccccCCCccccCcchhHHHHHHHhhhhhccccccc
Confidence 9732 3799999999999999999998766653
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-13 Score=137.46 Aligned_cols=110 Identities=25% Similarity=0.498 Sum_probs=98.0
Q ss_pred CccchhhhhCCCCCEEEeeCCCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC-----CceecCCCe
Q 027085 2 GNGCFYHVQEPVSHVVARPSPNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP-----NGRFMTQKK 76 (228)
Q Consensus 2 ~~~~~~l~~~p~~gi~v~p~~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP-----n~~v~~~G~ 76 (228)
+.+..-+.++.++|+.+.|.+..+...+++|.||.||||++|+|.|.|.||..||..||.++++|- |+|.|.+|+
T Consensus 288 ~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GK 367 (1101)
T KOG0895|consen 288 AKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGK 367 (1101)
T ss_pred HHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCce
Confidence 345667889999999999999999999999999999999999999999999999999999999992 666889999
Q ss_pred EeccCCCC-CC---CCCCCC-cchHHHHHhhhccccCCCC
Q 027085 77 LCLSMSDF-HP---ESWNPM-WSVSSILTGLLSFMMDTSP 111 (228)
Q Consensus 77 iCl~~L~~-~~---~~W~p~-~~i~~vL~~i~~ll~~p~p 111 (228)
||+++|.. .. +.|+|. .+|.++|..|+.++.+..|
T Consensus 368 VcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~P 407 (1101)
T KOG0895|consen 368 VCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEP 407 (1101)
T ss_pred EEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCc
Confidence 99999852 22 789997 8999999999999987533
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-10 Score=91.37 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=65.8
Q ss_pred ceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC---CceecCCCeEeccCCCCCCCCCCCCcchHHHHHh
Q 027085 25 ILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP---NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTG 101 (228)
Q Consensus 25 l~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP---n~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~ 101 (228)
+..|.++|.||+.|+||+-+|.++|.+.++||..||.|+|.|. ++....+|.|--..+... +.|+..|+++.||..
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L-~~W~~~y~~~~vl~~ 116 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVL-ARWQRSYSIKMVLGQ 116 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchh-hcccccchhhHHHHh
Confidence 6789999999999999999999999999999999999999994 221144444432222111 799999999999999
Q ss_pred hhccccC
Q 027085 102 LLSFMMD 108 (228)
Q Consensus 102 i~~ll~~ 108 (228)
++.+|..
T Consensus 117 lr~~m~~ 123 (138)
T KOG0896|consen 117 LRKEMMS 123 (138)
T ss_pred hhHHHHH
Confidence 9976643
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.3e-07 Score=68.47 Aligned_cols=64 Identities=14% Similarity=0.420 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCCCCCCceeecCCC---ceecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccCCC
Q 027085 45 YYGKIKFPPEYPYKPPGILMITPN---GRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMDTS 110 (228)
Q Consensus 45 f~~~i~fp~~YP~~pP~v~F~tPn---~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~p~ 110 (228)
.-+.+.|+++||+.||.++-..|+ +.+-.+|.||+.+|+ ++.|+.+|+++.++++|...+..-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlVkG~ 79 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLVKGG 79 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhhccc
Confidence 445678999999999999999985 457788999999997 5999999999999999999886643
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.02 E-value=6.6e-06 Score=65.41 Aligned_cols=68 Identities=25% Similarity=0.590 Sum_probs=56.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeecCC-----CceecCCCeEeccCCCCCCCCCCCCcchHHHHHhhhccccC
Q 027085 41 AGGYYYGKIKFPPEYPYKPPGILMITP-----NGRFMTQKKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108 (228)
Q Consensus 41 egG~f~~~i~fp~~YP~~pP~v~F~tP-----n~~v~~~G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~ 108 (228)
.|+.|.+.|.||++||..||.|....| -+|++.+|.+|+---....+.|.|.-.+.++|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999977753 24588999999931122238999999999999999999974
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.97 E-value=1.1e-05 Score=63.26 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=55.2
Q ss_pred CceEEEEEEEcCCCCCCCCcEE--EEEEEcCCCCCCCCCceeecC-------CCceecCCCeEeccCCCCCCCCCCC-Cc
Q 027085 24 DILEWHYVLEGSNGTPFAGGYY--YGKIKFPPEYPYKPPGILMIT-------PNGRFMTQKKLCLSMSDFHPESWNP-MW 93 (228)
Q Consensus 24 dl~~w~~~I~Gp~~TpYegG~f--~~~i~fp~~YP~~pP~v~F~t-------Pn~~v~~~G~iCl~~L~~~~~~W~p-~~ 93 (228)
.+....++|.- .|+|..| -+.|-+|.+||..||.+.... ++-+|+.+|+|.+..| ++|++ ..
T Consensus 31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL----~~W~~~~s 102 (121)
T PF05743_consen 31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL----QNWNPPSS 102 (121)
T ss_dssp EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH----HT--TTTS
T ss_pred eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh----ccCCCCCC
Confidence 35566666663 6888888 456779999999999986553 2337899999999998 58988 88
Q ss_pred chHHHHHhhhccccCC
Q 027085 94 SVSSILTGLLSFMMDT 109 (228)
Q Consensus 94 ~i~~vL~~i~~ll~~p 109 (228)
+|.+++..+...|.+.
T Consensus 103 ~L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 103 NLVDLVQELQAVFSEE 118 (121)
T ss_dssp -HHHHHHHHHHCCCHS
T ss_pred CHHHHHHHHHHHHhHc
Confidence 9999999988888653
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0025 Score=57.79 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=62.9
Q ss_pred CceEEEEEEEcCCCCCCCCcEEEE--EEEcCCCCCCCCCceeecC-C------CceecCCCeEeccCCCCCCCCCCC-Cc
Q 027085 24 DILEWHYVLEGSNGTPFAGGYYYG--KIKFPPEYPYKPPGILMIT-P------NGRFMTQKKLCLSMSDFHPESWNP-MW 93 (228)
Q Consensus 24 dl~~w~~~I~Gp~~TpYegG~f~~--~i~fp~~YP~~pP~v~F~t-P------n~~v~~~G~iCl~~L~~~~~~W~p-~~ 93 (228)
+++...++|. .+|.|-.|.+ .|-+.+.||+.||-+.... + +-+|+.+|.|-|..|+ +|.+ ++
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh----~W~~pss 122 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH----NWDPPSS 122 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc----cCCCccc
Confidence 4566666665 5788887765 5669999999999875442 1 2468999999999994 8987 88
Q ss_pred chHHHHHhhhccccCCCCCC
Q 027085 94 SVSSILTGLLSFMMDTSPTT 113 (228)
Q Consensus 94 ~i~~vL~~i~~ll~~p~p~~ 113 (228)
++..++..+...|.++.|..
T Consensus 123 dLv~Liq~l~a~f~~~pP~y 142 (365)
T KOG2391|consen 123 DLVGLIQELIAAFSEDPPVY 142 (365)
T ss_pred hHHHHHHHHHHHhcCCCccc
Confidence 89999998888887765543
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.08 E-value=0.036 Score=43.58 Aligned_cols=91 Identities=15% Similarity=0.303 Sum_probs=59.8
Q ss_pred CCEEEeeCCCCceEEEEEEEc---CCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeE--eccCCC-----
Q 027085 14 SHVVARPSPNDILEWHYVLEG---SNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKL--CLSMSD----- 83 (228)
Q Consensus 14 ~gi~v~p~~~dl~~w~~~I~G---p~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~i--Cl~~L~----- 83 (228)
.|+...-..+.-..|.+ |.| |+| .|.+..-.+-|.+|..||..+|.+-+..|....-..|.| |-+...
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCe
Confidence 35555555555556655 666 555 699999999999999999999998888874332233444 444322
Q ss_pred ------CCCCCCCC-CcchHHHHHhhhccc
Q 027085 84 ------FHPESWNP-MWSVSSILTGLLSFM 106 (228)
Q Consensus 84 ------~~~~~W~p-~~~i~~vL~~i~~ll 106 (228)
-|...|+| .-+|.+.|..|...|
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 23357888 345777776666544
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=93.40 E-value=0.096 Score=42.17 Aligned_cols=53 Identities=23% Similarity=0.553 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCCCCceeecC---CCceecCCCeEeccCCCCCCCCC---CCCcchHHHH
Q 027085 45 YYGKIKFPPEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESW---NPMWSVSSIL 99 (228)
Q Consensus 45 f~~~i~fp~~YP~~pP~v~F~t---Pn~~v~~~G~iCl~~L~~~~~~W---~p~~~i~~vL 99 (228)
|.+++.+|..||..||.|..-. .-.-.|..|+||++. .|. .-| .|.+.|.+.|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~-HFk-PLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTD-HFK-PLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---T-THH-HHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeec-ccc-hhhhhcCCchhHHHHH
Confidence 6677889999999999986543 112257899999975 121 344 4566666654
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=92.34 E-value=0.78 Score=33.83 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcEEEEEEEcCCCCCCCCCceeecCC
Q 027085 42 GGYYYGKIKFPPEYPYKPPGILMITP 67 (228)
Q Consensus 42 gG~f~~~i~fp~~YP~~pP~v~F~tP 67 (228)
.-.+.+.+.||++||..+|.|.+.++
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34589999999999999999887653
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=91.99 E-value=0.28 Score=36.47 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCceEEEEEEEc--CCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC
Q 027085 23 NDILEWHYVLEG--SNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67 (228)
Q Consensus 23 ~dl~~w~~~I~G--p~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP 67 (228)
.+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...++
T Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 334455555522 233344556899999999999999999986653
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=90.59 E-value=0.23 Score=40.87 Aligned_cols=65 Identities=28% Similarity=0.588 Sum_probs=47.6
Q ss_pred CcEE---EEEEEcCCCCCCCCCceeecC---C-C-ceecCC-----CeEeccCCCCCCCCCCCCcchHHHHHhhhccccC
Q 027085 42 GGYY---YGKIKFPPEYPYKPPGILMIT---P-N-GRFMTQ-----KKLCLSMSDFHPESWNPMWSVSSILTGLLSFMMD 108 (228)
Q Consensus 42 gG~f---~~~i~fp~~YP~~pP~v~F~t---P-n-~~v~~~-----G~iCl~~L~~~~~~W~p~~~i~~vL~~i~~ll~~ 108 (228)
+|+. .+.|.|+.+||..+|.|.+.- | + +|+... ..+|+.--.. .+|.+.+++..+|..|...|.+
T Consensus 49 ~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~--~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 49 VGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW--SEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred CCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH--HHhhhccCHHHHHHHHHHHHHH
Confidence 3555 345789999999999776654 2 2 334444 6799975443 6899999999999999888743
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.12 E-value=1.2 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.454 Sum_probs=45.7
Q ss_pred ceEEEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCceeecC---CCceecCCCeEeccCCCCCCCCC--
Q 027085 25 ILEWHYVLEGSNGTPFAGG----------YYYGKIKFPPEYPYKPPGILMIT---PNGRFMTQKKLCLSMSDFHPESW-- 89 (228)
Q Consensus 25 l~~w~~~I~Gp~~TpYegG----------~f~~~i~fp~~YP~~pP~v~F~t---Pn~~v~~~G~iCl~~L~~~~~~W-- 89 (228)
-..|.-.=..++||-|-|. .|.+++.+|-.||..+|.|-.-- .--..+..|.||+.. ..+.-|
T Consensus 50 d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~--hfkplwar 127 (167)
T KOG3357|consen 50 DNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTD--HFKPLWAR 127 (167)
T ss_pred CCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeecc--ccchhhhh
Confidence 3445444456788888774 35667778999999999886432 111257789999963 112455
Q ss_pred -CCCcchHHHH
Q 027085 90 -NPMWSVSSIL 99 (228)
Q Consensus 90 -~p~~~i~~vL 99 (228)
.|.+.|.+.+
T Consensus 128 n~pkfgiaha~ 138 (167)
T KOG3357|consen 128 NVPKFGIAHAM 138 (167)
T ss_pred cCcchhHHHHH
Confidence 3445555543
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.20 E-value=41 Score=34.38 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred ceEEEEEEEcCCCCCCCCcEE-EEEEEcCCCCCCC-CCceeecCC
Q 027085 25 ILEWHYVLEGSNGTPFAGGYY-YGKIKFPPEYPYK-PPGILMITP 67 (228)
Q Consensus 25 l~~w~~~I~Gp~~TpYegG~f-~~~i~fp~~YP~~-pP~v~F~tP 67 (228)
-..-.+.+.||-... .|-+| ++.|.||.+||.+ +|+++|..|
T Consensus 448 ~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 448 DRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345567778876533 44444 7889999999986 699999864
No 36
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=51.38 E-value=17 Score=29.06 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCcEEEEEEEcCCCCC-CCCCceeecC
Q 027085 41 AGGYYYGKIKFPPEYP-YKPPGILMIT 66 (228)
Q Consensus 41 egG~f~~~i~fp~~YP-~~pP~v~F~t 66 (228)
+.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4599999999999999 9999998885
No 37
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.11 E-value=18 Score=30.46 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeecC
Q 027085 41 AGGYYYGKIKFPPEYPYKPPGILMIT 66 (228)
Q Consensus 41 egG~f~~~i~fp~~YP~~pP~v~F~t 66 (228)
+.|.|.|+=.+|--||..+|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56999999999999999999998884
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=49.60 E-value=16 Score=31.38 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCCCCCCceeecCC
Q 027085 44 YYYGKIKFPPEYPYKPPGILMITP 67 (228)
Q Consensus 44 ~f~~~i~fp~~YP~~pP~v~F~tP 67 (228)
.+.+.+.++++||..+|-|.+..+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~~~ 73 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAFEN 73 (215)
T ss_pred cEEEEEEccCCCCCCCcceecccc
Confidence 789999999999999999965555
No 39
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.01 E-value=32 Score=28.05 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCceeecC
Q 027085 41 AGGYYYGKIKFPPEYP-----YKPPGILMIT 66 (228)
Q Consensus 41 egG~f~~~i~fp~~YP-----~~pP~v~F~t 66 (228)
+.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3589999999999999 7899888874
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=36.95 E-value=56 Score=30.04 Aligned_cols=27 Identities=30% Similarity=0.693 Sum_probs=25.5
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCceeec
Q 027085 39 PFAGGYYYGKIKFPPEYPYKPPGILMI 65 (228)
Q Consensus 39 pYegG~f~~~i~fp~~YP~~pP~v~F~ 65 (228)
||.|-..+-+|.|...||..||-+.|-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~ 87 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFG 87 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeC
Confidence 699999999999999999999999996
No 41
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=31.34 E-value=1.4e+02 Score=21.57 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=28.2
Q ss_pred eEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCC
Q 027085 26 LEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITP 67 (228)
Q Consensus 26 ~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tP 67 (228)
++|.+-|.|+.+.--..=+=++...+.+.|+. |...+..|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 68999999988865455666888889899875 66666665
No 42
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.08 E-value=51 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=19.3
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCceeec
Q 027085 41 AGGYYYGKIKFPPEYPY-----KPPGILMI 65 (228)
Q Consensus 41 egG~f~~~i~fp~~YP~-----~pP~v~F~ 65 (228)
+.|.|.|+-..|-.||. .||.|+|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45889999999999997 55555444
No 43
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.84 E-value=59 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.2
Q ss_pred CcEEEEEEEcCCCCCC-----CCCceeec
Q 027085 42 GGYYYGKIKFPPEYPY-----KPPGILMI 65 (228)
Q Consensus 42 gG~f~~~i~fp~~YP~-----~pP~v~F~ 65 (228)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 66666555
No 44
>PRK11700 hypothetical protein; Provisional
Probab=26.10 E-value=1.5e+02 Score=25.09 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=31.1
Q ss_pred cEEEEEEEcCC--------------CCCCCCCceeecC----------CCceec-CCCeEeccCCCCCCCCCCCCcchHH
Q 027085 43 GYYYGKIKFPP--------------EYPYKPPGILMIT----------PNGRFM-TQKKLCLSMSDFHPESWNPMWSVSS 97 (228)
Q Consensus 43 G~f~~~i~fp~--------------~YP~~pP~v~F~t----------Pn~~v~-~~G~iCl~~L~~~~~~W~p~~~i~~ 97 (228)
|-=|+++.+|- +++..++-|++.+ ||+.+. ++|.||+ ++|+ ++|+.
T Consensus 110 GWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcI---K~HP------~slk~ 180 (187)
T PRK11700 110 GWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICI---KFHP------HSIKE 180 (187)
T ss_pred CceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEE---EEcC------ccHHH
Confidence 44566776663 3455566666554 476443 4688998 4554 67888
Q ss_pred HHHh
Q 027085 98 ILTG 101 (228)
Q Consensus 98 vL~~ 101 (228)
|+.+
T Consensus 181 IV~S 184 (187)
T PRK11700 181 IVAS 184 (187)
T ss_pred HHHh
Confidence 7754
No 45
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=24.36 E-value=75 Score=28.60 Aligned_cols=64 Identities=22% Similarity=0.474 Sum_probs=41.0
Q ss_pred CCCceEEEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCceeecCCCceecCCCeEeccCCCCCCCCCCC-CcchHHHHH
Q 027085 22 PNDILEWHYVLEGSNGTPFAGGYYYGKIKFPPEYPYKPPGILMITPNGRFMTQKKLCLSMSDFHPESWNP-MWSVSSILT 100 (228)
Q Consensus 22 ~~dl~~w~~~I~Gp~~TpYegG~f~~~i~fp~~YP~~pP~v~F~tPn~~v~~~G~iCl~~L~~~~~~W~p-~~~i~~vL~ 100 (228)
++++...++.+.. +.....++|.+|.+||.++|.+..--|-+ + . ..|.+ ..++.+|+.
T Consensus 122 d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~~-~-----------~---~~w~~~~ssL~~v~~ 180 (291)
T PF09765_consen 122 DDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPIP-F-----------S---LSWSPSQSSLKDVVQ 180 (291)
T ss_dssp -CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--H-----------H---HHHHCHT-SHHHHHH
T ss_pred CCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCcc-h-----------h---hhhcccccCHHHHHH
Confidence 5677777777773 12567889999999999999643222211 0 1 47888 777888777
Q ss_pred hhhccc
Q 027085 101 GLLSFM 106 (228)
Q Consensus 101 ~i~~ll 106 (228)
..+..+
T Consensus 181 qF~~~l 186 (291)
T PF09765_consen 181 QFQEAL 186 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 46
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.21 E-value=67 Score=31.71 Aligned_cols=28 Identities=32% Similarity=0.838 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEEcCCCCCCC---CCceeecCC
Q 027085 39 PFAGGYYYGKIKFPPEYPYK---PPGILMITP 67 (228)
Q Consensus 39 pYegG~f~~~i~fp~~YP~~---pP~v~F~tP 67 (228)
||.=|.|-+ +.+|+.||+. -|.++|+||
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecc
Confidence 777788887 5679999985 599999998
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=22.84 E-value=80 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEEEcCCCCCCCCCceeecC
Q 027085 44 YYYGKIKFPPEYPYKPPGILMIT 66 (228)
Q Consensus 44 ~f~~~i~fp~~YP~~pP~v~F~t 66 (228)
.|-++|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 47778889999999999999875
No 48
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.96 E-value=99 Score=27.82 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.4
Q ss_pred CCcEEEEEEEcCCCCC
Q 027085 41 AGGYYYGKIKFPPEYP 56 (228)
Q Consensus 41 egG~f~~~i~fp~~YP 56 (228)
+.|.|.|+=.+|.-||
T Consensus 179 ~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 179 AEGRYRARSIVPSGYG 194 (285)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4699999999999997
Done!