BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027086
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XCM|E Chain E, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
pdb|2XCM|F Chain F, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
Length = 74
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 155 IGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGI 214
I IN+PQ+CKNKGCG+TFKE+DNHETACS+HPGPAVFHDR+RGWKCCD+HVKEFDEFM I
Sbjct: 4 IDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEI 63
Query: 215 PPCTKGWHDAN 225
PPCTKGWH ++
Sbjct: 64 PPCTKGWHSSS 74
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 14 CQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKH 73
C+ GC TF E DN E +C+ H +FHD ++ W CC +F F+EIP C G H
Sbjct: 12 CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWH 71
Query: 74 TT 75
++
Sbjct: 72 SS 73
>pdb|2YRT|A Chain A, Solution Structure Of The Chord Domain Of Human Chord-
Containing Protein 1
Length = 75
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTG 71
L C GC F + N + +CT+H P+FHD +K WSCCKRR+ DFS FL I GC G
Sbjct: 10 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKG 69
Query: 72 KHTTEK 77
+H +EK
Sbjct: 70 RHNSEK 75
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 162 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGW 221
+C N+GCG+ F + N + AC+YHPG VFHD ++GW CC +F +F+ I CTKG
Sbjct: 11 LCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGR 70
Query: 222 HDA 224
H++
Sbjct: 71 HNS 73
>pdb|1EO2|B Chain B, Crystal Structure Of Acinetobacter Sp. Adp1
Protocatechuate 3,4- Dioxygenase
pdb|1EO9|B Chain B, Crystal Structure Of Acinetobacter Sp. Adp1
Protocatechuate 3,4- Dioxygenase At Ph < 7.0
pdb|1EOA|B Chain B, Crystal Structure Of Acinetobacter Sp. Adp1
Protocatechuate 3,4- Dioxygenase In Complex With Cyanide
pdb|1EOB|B Chain B, Crystal Structure Of Acinetobacter Sp. Adp1
Protocatechuate 3,4- Dioxygenase In Complex With
3,4-Dihydroxybenzoate
pdb|1EOC|B Chain B, Crystal Structure Of Acinetobacter Sp. Adp1
Protocatechuate 3,4- Dioxygenase In Complex With
4-Nitrocatechol
pdb|2BUM|B Chain B, Crystal Structure Of Wild-Type Protocatechuate 3,4-
Dioxygenase From Acinetobacter Sp. Adp1
pdb|2BUQ|B Chain B, Crystal Structure Of Wild-Type Protocatechuate 3,4-
Dioxygenase From Acinetobacter Sp. Adp1 In Complex With
Catechol
pdb|2BUR|B Chain B, Crystal Structure Of Wild-Type Protocatechuate 3,4-
Dioxygenase From Acinetobacter Sp. Adp1 In Complex With
4- Hydroxybenzoate
pdb|2BUX|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R133h
pdb|2BUY|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R133h In Complex With
Catechol
pdb|2BUZ|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R133h In Complex With 4-
Nitrocatechol
pdb|2BV0|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R133h In Complex With
Protocatechuate
Length = 241
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 167 GCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIH 204
GCG+ + + + + PGP + +R+ W+ IH
Sbjct: 126 GCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIH 163
>pdb|2BUT|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R457s - Apo
pdb|2BUV|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R457s In Complex With
Protocatechuate
pdb|2BUU|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R457s In Complex With 4-
Nitrocatechol
pdb|2BUW|B Chain B, Crystal Structure Of Protocatechuate 3,4-Dioxygenase From
Acinetobacter Sp. Adp1 Mutant R457s In Complex With 4-
Hydroxybenzoate
Length = 241
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 167 GCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIH 204
GCG+ + + + + PGP + +R+ W IH
Sbjct: 126 GCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWSPAHIH 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,452,896
Number of Sequences: 62578
Number of extensions: 228354
Number of successful extensions: 287
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 8
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)