Query 027086
Match_columns 228
No_of_seqs 160 out of 392
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1667 Zn2+-binding protein M 100.0 2.4E-70 5.3E-75 488.8 6.8 199 11-225 1-207 (320)
2 PF04968 CHORD: CHORD ; Inter 100.0 1.2E-36 2.6E-41 222.2 2.7 64 160-223 1-64 (64)
3 PF04968 CHORD: CHORD ; Inter 100.0 4.4E-36 9.4E-41 219.3 1.9 64 11-74 1-64 (64)
4 KOG1667 Zn2+-binding protein M 99.9 2E-27 4.4E-32 213.3 3.9 78 2-79 133-210 (320)
5 smart00107 BTK Bruton's tyrosi 96.0 0.0045 9.7E-08 40.9 1.9 27 183-219 7-33 (36)
6 smart00107 BTK Bruton's tyrosi 93.5 0.067 1.5E-06 35.3 2.4 27 34-70 7-33 (36)
7 PF00779 BTK: BTK motif; Inte 92.5 0.054 1.2E-06 34.9 0.8 27 34-70 2-28 (32)
8 PF00779 BTK: BTK motif; Inte 91.0 0.14 3E-06 33.1 1.5 27 183-219 2-28 (32)
9 PF11822 DUF3342: Domain of un 89.1 0.24 5.2E-06 46.6 2.0 47 161-209 262-317 (317)
10 PF11822 DUF3342: Domain of un 82.1 0.83 1.8E-05 43.1 1.9 47 12-60 262-317 (317)
11 COG1773 Rubredoxin [Energy pro 41.3 26 0.00056 25.3 2.4 37 11-51 3-39 (55)
12 PHA03358 Alkaline exonuclease; 37.4 12 0.00027 28.5 0.2 21 197-217 4-38 (75)
13 PF08391 Ly49: Ly49-like prote 31.0 17 0.00036 29.9 0.1 23 182-208 97-119 (119)
14 PF10813 DUF2733: Protein of u 28.3 24 0.00052 22.9 0.5 9 197-205 4-12 (32)
15 PF14952 zf-tcix: Putative tre 28.0 26 0.00055 24.4 0.5 17 10-26 24-40 (44)
16 PF09332 Mcm10: Mcm10 replicat 20.8 15 0.00033 35.0 -2.2 59 161-225 253-315 (344)
No 1
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=100.00 E-value=2.4e-70 Score=488.84 Aligned_cols=199 Identities=32% Similarity=0.669 Sum_probs=149.9
Q ss_pred ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCCCCCC-CCCCCCC-
Q 027086 11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPVLT-KPVATSK- 88 (228)
Q Consensus 11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~P~~~-~p~~~~~- 88 (228)
+++|||+||||.|||..|.+++|+||||.|+|||++||||||+||++||+|||+|+|||.|+|+++||+++ +|+.++.
T Consensus 1 ~l~CynkGCGq~FDP~tN~deaC~~HPG~P~FHDA~KgWsCC~kkstDFseflnikGCT~gkHsneKppe~~kp~~~et~ 80 (320)
T KOG1667|consen 1 KLQCYNKGCGQLFDPKTNDDEACTYHPGVPYFHDAYKGWSCCDKKSTDFSEFLNIKGCTRGKHSNEKPPEPKKPEVKETR 80 (320)
T ss_pred CceeeccCcccccCCCCCCccccccCCCCcchhhhhccccccccccccHHHhhccccccccccccCCCCCCCCCcccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999987 3333221
Q ss_pred -CCCCCCCCC----CcCCCCCCchhhhhhccCCccccCCCCccccccccCCCCCCCCCCCCC-CCCCCCccccCCCCCCc
Q 027086 89 -TPAPAPAPS----TTLGSSTPSKELCSRCRQGFFCSDHGSQAKEQTNYAPAVPAGSNVAAE-VPPVPVKKKIGINEPQI 162 (228)
Q Consensus 89 -~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~g~~ 162 (228)
.+...+... +.+..+|.+.. ...+.. -..+.+.++++++.++. +.++ ....+|.+|++
T Consensus 81 ~ekkel~~v~~~~~e~~~~~pkd~~-------------~ik~~~-~~~~tp~isaale~~l~~kkea--~q~~~I~iGts 144 (320)
T KOG1667|consen 81 PEKKELVEVWKGLNESGKLDPKDAT-------------PIKQNL-NVEVTPGISAALEKALKEKKEA--AQSADIQIGTS 144 (320)
T ss_pred cccccceeechhhHhhCcCCCCccc-------------cccccc-CcccCcchhHHHHHHHHhcchh--hcCcCceeCCc
Confidence 111111000 00101111000 000000 00122233444444433 1111 12345999999
Q ss_pred cccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086 163 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225 (228)
Q Consensus 163 C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~ 225 (228)
|+|+||..+|++.+|..+.|.||||+|||||||||||||.+||+||.+||+|+|||.|+|.|.
T Consensus 145 CkN~GCs~~fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt~GeH~w~ 207 (320)
T KOG1667|consen 145 CKNNGCSTEFQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCTSGEHKWR 207 (320)
T ss_pred ccCCCcceeeeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999993
No 2
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=100.00 E-value=1.2e-36 Score=222.24 Aligned_cols=64 Identities=56% Similarity=1.280 Sum_probs=48.5
Q ss_pred CCccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCC
Q 027086 160 PQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHD 223 (228)
Q Consensus 160 g~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~ 223 (228)
+++|+|+||+++|.+++|.+++|+||||.|||||||||||||++||+|||+||+||||++|+|.
T Consensus 1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~~G~H~ 64 (64)
T PF04968_consen 1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCTTGKHS 64 (64)
T ss_dssp -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SCEE---
T ss_pred CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCcccCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999995
No 3
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=100.00 E-value=4.4e-36 Score=219.31 Aligned_cols=64 Identities=48% Similarity=1.224 Sum_probs=48.4
Q ss_pred ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCC
Q 027086 11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHT 74 (228)
Q Consensus 11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~ 74 (228)
+++|+|.||+++|++++|.+++|+||||.||||||||+||||+++++||++||+|+||++|+|+
T Consensus 1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~~G~H~ 64 (64)
T PF04968_consen 1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCTTGKHS 64 (64)
T ss_dssp -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SCEE---
T ss_pred CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCcccCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999996
No 4
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.93 E-value=2e-27 Score=213.30 Aligned_cols=78 Identities=38% Similarity=0.877 Sum_probs=74.5
Q ss_pred CCCCcccccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCCCC
Q 027086 2 ASQNDDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEKPV 79 (228)
Q Consensus 2 ~~~~~~~~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~P~ 79 (228)
|.|.++|.++..|+|.||..+|+..++..+.|.||||+||||||||+||||+++++||..||+++|||.|+|-|.+-.
T Consensus 133 a~q~~~I~iGtsCkN~GCs~~fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt~GeH~w~k~~ 210 (320)
T KOG1667|consen 133 AAQSADIQIGTSCKNNGCSTEFQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCTSGEHKWRKNE 210 (320)
T ss_pred hhcCcCceeCCcccCCCcceeeeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCccccchhhhccC
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999999843
No 5
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=95.98 E-value=0.0045 Score=40.89 Aligned_cols=27 Identities=37% Similarity=0.864 Sum_probs=22.0
Q ss_pred eecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086 183 SYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK 219 (228)
Q Consensus 183 ~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~ 219 (228)
.||||. |-+|+ |+||+. .....+||+.
T Consensus 7 ~yHP~~--~~~G~--W~CC~q------~~k~a~GC~~ 33 (36)
T smart00107 7 KYHPSF--WVDGK--WLCCQQ------SEKNAPGCTP 33 (36)
T ss_pred ccCCCc--eeCCe--EccCCC------cCcCCCCCcc
Confidence 599998 76765 999987 6778899975
No 6
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=93.54 E-value=0.067 Score=35.31 Aligned_cols=27 Identities=37% Similarity=0.999 Sum_probs=20.3
Q ss_pred cccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086 34 TFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT 70 (228)
Q Consensus 34 ~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~ 70 (228)
.||||. |-+|. |+||+... ...+||+.
T Consensus 7 ~yHP~~--~~~G~--W~CC~q~~------k~a~GC~~ 33 (36)
T smart00107 7 KYHPSF--WVDGK--WLCCQQSE------KNAPGCTP 33 (36)
T ss_pred ccCCCc--eeCCe--EccCCCcC------cCCCCCcc
Confidence 599997 66665 99999632 46788874
No 7
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=92.48 E-value=0.054 Score=34.94 Aligned_cols=27 Identities=30% Similarity=0.949 Sum_probs=15.5
Q ss_pred cccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086 34 TFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT 70 (228)
Q Consensus 34 ~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~ 70 (228)
.||||. |- ...|+||+... ...+||+.
T Consensus 2 ~yHPg~--~~--~g~W~CC~q~~------k~a~GC~~ 28 (32)
T PF00779_consen 2 KYHPGA--WR--GGKWLCCKQTD------KSAPGCQP 28 (32)
T ss_dssp EE-SS---EE--TTCESSSS-SS------TTS--SEE
T ss_pred CcCCCc--cc--CCcCcCCCCcC------cCCCCCcc
Confidence 599997 44 45799999653 45788874
No 8
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=90.99 E-value=0.14 Score=33.05 Aligned_cols=27 Identities=33% Similarity=0.923 Sum_probs=16.6
Q ss_pred eecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086 183 SYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK 219 (228)
Q Consensus 183 ~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~ 219 (228)
.||||. |-+| .|+||.. .-...+||+.
T Consensus 2 ~yHPg~--~~~g--~W~CC~q------~~k~a~GC~~ 28 (32)
T PF00779_consen 2 KYHPGA--WRGG--KWLCCKQ------TDKSAPGCQP 28 (32)
T ss_dssp EE-SS---EETT--CESSSS-------SSTTS--SEE
T ss_pred CcCCCc--ccCC--cCcCCCC------cCcCCCCCcc
Confidence 599997 6544 6999986 4677889875
No 9
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=89.06 E-value=0.24 Score=46.64 Aligned_cols=47 Identities=30% Similarity=0.734 Sum_probs=39.3
Q ss_pred CccccCCCCceeecCCCCCCCceecCCCccccCCCC---------eeecCCccccchh
Q 027086 161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMR---------GWKCCDIHVKEFD 209 (228)
Q Consensus 161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K---------~WsCC~~k~~dFd 209 (228)
..|++ |++.|.-.+-....|.|||-.++|=++.. .+.||+.++|-||
T Consensus 262 l~Csr--C~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe 317 (317)
T PF11822_consen 262 LYCSR--CNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE 317 (317)
T ss_pred EECcc--CCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence 37887 99999988877678999999999987432 4679999999986
No 10
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=82.13 E-value=0.83 Score=43.10 Aligned_cols=47 Identities=28% Similarity=0.718 Sum_probs=38.2
Q ss_pred cccccCCCCceeCCCCCCCCCccccCCCCcccCCC---------cccccCCCcccChh
Q 027086 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGM---------KEWSCCKRRSHDFS 60 (228)
Q Consensus 12 ~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~---------K~WsCC~k~~~df~ 60 (228)
+.| .-|++.|.-.+-....|.|||-.++|-++. -.+.||+.+++-||
T Consensus 262 l~C--srC~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe 317 (317)
T PF11822_consen 262 LYC--SRCNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE 317 (317)
T ss_pred EEC--ccCCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence 457 579999988876666899999999999843 23679999999886
No 11
>COG1773 Rubredoxin [Energy production and conversion]
Probab=41.32 E-value=26 Score=25.31 Aligned_cols=37 Identities=27% Similarity=0.738 Sum_probs=31.6
Q ss_pred ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc
Q 027086 11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC 51 (228)
Q Consensus 11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC 51 (228)
..+| +.||-.|+++. .+..|-.=||.+ |-|---.|.|
T Consensus 3 ~~~C--~~CG~vYd~e~-Gdp~~gi~pgT~-fedlPd~w~C 39 (55)
T COG1773 3 RWRC--SVCGYVYDPEK-GDPRCGIAPGTP-FEDLPDDWVC 39 (55)
T ss_pred ceEe--cCCceEecccc-CCccCCCCCCCc-hhhCCCccCC
Confidence 3568 58999999876 667888899998 9999999998
No 12
>PHA03358 Alkaline exonuclease; Provisional
Probab=37.44 E-value=12 Score=28.46 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=15.5
Q ss_pred eeecCCcccc--------------chhhhcCCCCC
Q 027086 197 GWKCCDIHVK--------------EFDEFMGIPPC 217 (228)
Q Consensus 197 ~WsCC~~k~~--------------dFd~Fl~i~gC 217 (228)
+||||+||+. ||++|-.--||
T Consensus 4 l~SiC~RR~nPl~DV~G~~INl~eDFE~fS~eT~~ 38 (75)
T PHA03358 4 LWSLCRRRVNSIGDVDGGIINLYNDYEEFSLETTK 38 (75)
T ss_pred hhhhhhccCCcccccCCCEechHHHHHHHhhccce
Confidence 7999998862 78888665555
No 13
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=30.99 E-value=17 Score=29.88 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=16.2
Q ss_pred ceecCCCccccCCCCeeecCCccccch
Q 027086 182 CSYHPGPAVFHDRMRGWKCCDIHVKEF 208 (228)
Q Consensus 182 C~yHpG~PvFHeg~K~WsCC~~k~~dF 208 (228)
+.-|.|.++ .++|+||..+-|=|
T Consensus 97 s~q~~g~~~----e~~W~cyg~kCYYF 119 (119)
T PF08391_consen 97 SSQHTGKPC----EKHWFCYGVKCYYF 119 (119)
T ss_dssp -TTSTT-EE----ECEEEEETTEEEEE
T ss_pred hhhcCCCCC----CCceeeeCceeeeC
Confidence 556777766 67999999887755
No 14
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=28.33 E-value=24 Score=22.95 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=7.8
Q ss_pred eeecCCccc
Q 027086 197 GWKCCDIHV 205 (228)
Q Consensus 197 ~WsCC~~k~ 205 (228)
.||+|+||.
T Consensus 4 ~~s~Ckrr~ 12 (32)
T PF10813_consen 4 LLSMCKRRH 12 (32)
T ss_pred eeeeeeccC
Confidence 799999876
No 15
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=27.98 E-value=26 Score=24.38 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.1
Q ss_pred cccccccCCCCceeCCC
Q 027086 10 KRLRCQRIGCNATFTED 26 (228)
Q Consensus 10 ~~~~C~n~GCg~~f~~~ 26 (228)
-++.|+|+.|++.|..-
T Consensus 24 R~~~CKN~~C~~~~~~~ 40 (44)
T PF14952_consen 24 RGLSCKNKSCPQVFNVL 40 (44)
T ss_pred ccccccCCccchhhhcc
Confidence 45789999999999754
No 16
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=20.82 E-value=15 Score=35.05 Aligned_cols=59 Identities=22% Similarity=0.474 Sum_probs=28.8
Q ss_pred CccccCCCCceeecCCCCCCCceecCCCccccCCCC-eeec--CCccccchhhhcCCCCCcc-ccCCCC
Q 027086 161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMR-GWKC--CDIHVKEFDEFMGIPPCTK-GWHDAN 225 (228)
Q Consensus 161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K-~WsC--C~~k~~dFd~Fl~i~gC~~-G~H~~~ 225 (228)
..|+- |..+|. ...+.|+=+.=.-..|++.| ||.| |..|+.-|+.+ -...|.. |...|.
T Consensus 253 v~C~~--C~yt~~---~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~-P~~~C~~Cg~~~we 315 (344)
T PF09332_consen 253 VTCKQ--CKYTAF---KPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLERL-PKKHCSNCGSSKWE 315 (344)
T ss_dssp EEETT--T--EES---S--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESSSS---S--TTT-S---E
T ss_pred EEcCC--CCCccc---CcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecccC-CCCCCCcCCcCcee
Confidence 35664 766553 34667965555577999977 7888 78999988765 4467753 445553
Done!