Query 027086
Match_columns 228
No_of_seqs 160 out of 392
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xcm_E RAR1, cytosolic heat sh 100.0 1.8E-37 6.1E-42 231.2 5.2 72 154-225 3-74 (74)
2 2xcm_E RAR1, cytosolic heat sh 100.0 9.4E-37 3.2E-41 227.3 3.8 70 6-75 4-73 (74)
3 2yrt_A Chord containing protei 100.0 1.7E-36 5.7E-41 226.5 5.1 69 9-77 6-75 (75)
4 2yrt_A Chord containing protei 100.0 2E-35 6.9E-40 220.6 4.9 65 161-225 10-74 (75)
5 2ys2_A Cytoplasmic tyrosine-pr 93.6 0.043 1.5E-06 37.7 2.7 33 27-69 7-39 (50)
6 2ys2_A Cytoplasmic tyrosine-pr 93.3 0.044 1.5E-06 37.7 2.3 33 177-219 8-40 (50)
7 2e6i_A Tyrosine-protein kinase 92.2 0.1 3.5E-06 37.5 3.1 32 177-218 8-39 (64)
8 2e6i_A Tyrosine-protein kinase 91.7 0.12 4.3E-06 37.1 3.1 33 27-69 7-39 (64)
9 2lul_A Tyrosine-protein kinase 90.3 0.17 6E-06 40.5 3.1 33 28-70 123-155 (164)
10 2lul_A Tyrosine-protein kinase 89.9 0.21 7.4E-06 39.9 3.3 31 179-219 125-155 (164)
11 1btk_A Bruton'S tyrosine kinas 85.0 0.39 1.3E-05 38.8 2.1 31 179-219 136-166 (169)
12 1btk_A Bruton'S tyrosine kinas 74.4 1.6 5.5E-05 35.1 2.4 32 28-69 134-165 (169)
13 1e8j_A Rubredoxin; iron-sulfur 56.1 13 0.00046 25.0 3.8 46 11-60 3-50 (52)
14 1s24_A Rubredoxin 2; electron 55.9 8.7 0.0003 28.9 3.1 50 7-60 31-82 (87)
15 2kn9_A Rubredoxin; metalloprot 54.6 14 0.00046 27.5 3.9 47 10-60 26-74 (81)
16 1dx8_A Rubredoxin; electron tr 52.4 16 0.00056 26.1 4.0 48 9-60 5-54 (70)
17 2v3b_B Rubredoxin 2, rubredoxi 52.3 10 0.00035 25.9 2.8 46 11-60 3-50 (55)
18 1yk4_A Rubredoxin, RD; electro 44.5 13 0.00043 25.2 2.2 45 12-60 3-49 (52)
19 2kwq_A Protein MCM10 homolog; 22.9 15 0.00052 27.8 -0.4 59 161-225 16-77 (92)
No 1
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-37 Score=231.21 Aligned_cols=72 Identities=82% Similarity=1.630 Sum_probs=69.1
Q ss_pred ccCCCCCCccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086 154 KIGINEPQICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225 (228)
Q Consensus 154 ~~~i~~g~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~ 225 (228)
.++|+++++|+|+||+++|.+++|.+++|+||||+|||||||||||||++||+|||+||+|+||++|+|+.+
T Consensus 3 ~~~i~~~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~k~~~dF~~Fl~i~GCt~G~H~~~ 74 (74)
T 2xcm_E 3 VIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS 74 (74)
T ss_dssp CCCTTSCEECCSBTTCCEECSTTCCTTCEEEBCCCEEEETTEEEETTTTEECSSHHHHTTCCCCEEECCCCC
T ss_pred eEccCCCCcEECCCcCCEecCCCCCCCceEecCCCceeCCCCeeeCCCCCcccChhHhccCCCcccccccCC
Confidence 467999999999999999999999999999999999999999999999999999999999999999999863
No 2
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana}
Probab=100.00 E-value=9.4e-37 Score=227.34 Aligned_cols=70 Identities=37% Similarity=0.856 Sum_probs=67.7
Q ss_pred cccccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCC
Q 027086 6 DDALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTT 75 (228)
Q Consensus 6 ~~~~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~ 75 (228)
-++.++++|+|+||+|.|++++|.+++|+||||+||||||||+||||+++++||++||+|+||++|+|++
T Consensus 4 ~~i~~~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~k~~~dF~~Fl~i~GCt~G~H~~ 73 (74)
T 2xcm_E 4 IDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSS 73 (74)
T ss_dssp CCTTSCEECCSBTTCCEECSTTCCTTCEEEBCCCEEEETTEEEETTTTEECSSHHHHTTCCCCEEECCCC
T ss_pred EccCCCCcEECCCcCCEecCCCCCCCceEecCCCceeCCCCeeeCCCCCcccChhHhccCCCcccccccC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999985
No 3
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=226.49 Aligned_cols=69 Identities=48% Similarity=1.035 Sum_probs=65.8
Q ss_pred ccc-cccccCCCCceeCCCCCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCcccCCCCC
Q 027086 9 LKR-LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKTGKHTTEK 77 (228)
Q Consensus 9 ~~~-~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~G~H~~~~ 77 (228)
.+| ++|+|+||+|.|++++|.+++|+||||+||||||||+||||+++++||++||+||||++|+|++++
T Consensus 6 ~~m~~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~kk~~dF~~Fl~i~GCt~G~H~~~k 75 (75)
T 2yrt_A 6 SGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEK 75 (75)
T ss_dssp CSCCEECCSTTTCCEECTTTCCTTTBCCCSSCEEEETTEEEESSSSCEESSHHHHTTCCCSSCBCCCSCC
T ss_pred CcCccccCCCCCCCEecCCCCCCCCeECCCCCcccCCCCeeeCCCCCcccCHHHhccCCCcccccccCCC
Confidence 345 599999999999999999999999999999999999999999999999999999999999999875
No 4
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=220.63 Aligned_cols=65 Identities=45% Similarity=1.149 Sum_probs=63.4
Q ss_pred CccccCCCCceeecCCCCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCccccCCCC
Q 027086 161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDAN 225 (228)
Q Consensus 161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~G~H~~~ 225 (228)
++|+|+||+++|.+++|.+++|+||||+||||||||+||||++||+|||+||+|+||++|+|+..
T Consensus 10 ~~C~n~GC~~~f~~~~n~~~~C~yHpG~PvFHdg~K~WsCC~kk~~dF~~Fl~i~GCt~G~H~~~ 74 (75)
T 2yrt_A 10 LLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSE 74 (75)
T ss_dssp EECCSTTTCCEECTTTCCTTTBCCCSSCEEEETTEEEESSSSCEESSHHHHTTCCCSSCBCCCSC
T ss_pred cccCCCCCCCEecCCCCCCCCeECCCCCcccCCCCeeeCCCCCcccCHHHhccCCCcccccccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999875
No 5
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=93.56 E-value=0.043 Score=37.69 Aligned_cols=33 Identities=33% Similarity=0.809 Sum_probs=23.5
Q ss_pred CCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCC
Q 027086 27 DNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCK 69 (228)
Q Consensus 27 ~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt 69 (228)
.|..-.=.||||. |-+| .|+||+... ...+||+
T Consensus 7 ~N~~~l~~YHPg~--~~~g--~W~CC~q~~------k~a~GC~ 39 (50)
T 2ys2_A 7 GNPHLLVKYHSGF--FVDG--KFLCCQQSC------KAAPGCT 39 (50)
T ss_dssp SCSCCSCCCCSSC--EETT--EESSSCCSS------SSCCCCC
T ss_pred cCcchhhhcCCCc--ccCC--eECCCCCCC------ccCCCCc
Confidence 3445567899997 4444 499999643 4678998
No 6
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=93.26 E-value=0.044 Score=37.68 Aligned_cols=33 Identities=33% Similarity=0.648 Sum_probs=24.2
Q ss_pred CCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086 177 NHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK 219 (228)
Q Consensus 177 ~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~ 219 (228)
|..-.=.||||. |-+|+ |+||.. .-..-+||+.
T Consensus 8 N~~~l~~YHPg~--~~~g~--W~CC~q------~~k~a~GC~~ 40 (50)
T 2ys2_A 8 NPHLLVKYHSGF--FVDGK--FLCCQQ------SCKAAPGCTL 40 (50)
T ss_dssp CSCCSCCCCSSC--EETTE--ESSSCC------SSSSCCCCCC
T ss_pred CcchhhhcCCCc--ccCCe--ECCCCC------CCccCCCCcc
Confidence 444456799998 65554 999976 5677899983
No 7
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.20 E-value=0.1 Score=37.53 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=24.5
Q ss_pred CCCCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCc
Q 027086 177 NHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCT 218 (228)
Q Consensus 177 ~~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~ 218 (228)
|..-.=.||||. |-+|+ |+||.. ....-+||+
T Consensus 8 N~~ll~~yHPg~--~~~Gk--W~CC~q------~~k~a~GC~ 39 (64)
T 2e6i_A 8 NNSLVPKYHPNF--WMDGK--WRCCSQ------LEKLATGCA 39 (64)
T ss_dssp CCSSCCEECSSC--BCSSS--BSSSCC------SCTTCCCCE
T ss_pred ChhhhhhcCCCc--eeCCe--ECCCCC------CCccCCCCc
Confidence 455567899998 76665 999976 466778887
No 8
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.70 E-value=0.12 Score=37.08 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=24.1
Q ss_pred CCCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCC
Q 027086 27 DNPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCK 69 (228)
Q Consensus 27 ~N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt 69 (228)
.|..-.=.||||. |-+|. |+||.... ..-+||+
T Consensus 7 ~N~~ll~~yHPg~--~~~Gk--W~CC~q~~------k~a~GC~ 39 (64)
T 2e6i_A 7 GNNSLVPKYHPNF--WMDGK--WRCCSQLE------KLATGCA 39 (64)
T ss_dssp CCCSSCCEECSSC--BCSSS--BSSSCCSC------TTCCCCE
T ss_pred cChhhhhhcCCCc--eeCCe--ECCCCCCC------ccCCCCc
Confidence 3455567899997 55655 99999654 3578998
No 9
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=90.34 E-value=0.17 Score=40.46 Aligned_cols=33 Identities=27% Similarity=0.705 Sum_probs=23.4
Q ss_pred CCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCCc
Q 027086 28 NPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCKT 70 (228)
Q Consensus 28 N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt~ 70 (228)
|..-.=.||||. |-++ .||||+... ...+||..
T Consensus 123 n~~~~~~yHpg~--~~~~--~w~CC~~~~------~~a~GC~~ 155 (164)
T 2lul_A 123 NNNIMIKYHPKF--WTDG--SYQCCRQTE------KLAPGCEK 155 (164)
T ss_dssp CSCCCSEECCSC--CCTT--CCCSSSCTT------SCCCCSEE
T ss_pred ChhhhhhcCCCc--ccCC--eEeeCCCCC------CCCCCCcc
Confidence 444456799998 5554 499999654 46789975
No 10
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=89.94 E-value=0.21 Score=39.92 Aligned_cols=31 Identities=29% Similarity=0.634 Sum_probs=23.3
Q ss_pred CCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086 179 ETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK 219 (228)
Q Consensus 179 ~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~ 219 (228)
.-.=.||||. |-+| .||||.. .-...+||..
T Consensus 125 ~~~~~yHpg~--~~~~--~w~CC~~------~~~~a~GC~~ 155 (164)
T 2lul_A 125 NIMIKYHPKF--WTDG--SYQCCRQ------TEKLAPGCEK 155 (164)
T ss_dssp CCCSEECCSC--CCTT--CCCSSSC------TTSCCCCSEE
T ss_pred hhhhhcCCCc--ccCC--eEeeCCC------CCCCCCCCcc
Confidence 3345799998 6555 4999976 5678899986
No 11
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=84.96 E-value=0.39 Score=38.81 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCCceecCCCccccCCCCeeecCCccccchhhhcCCCCCcc
Q 027086 179 ETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTK 219 (228)
Q Consensus 179 ~~~C~yHpG~PvFHeg~K~WsCC~~k~~dFd~Fl~i~gC~~ 219 (228)
.-.=.||||. |-+| .|+||.. ....-+||..
T Consensus 136 ~~~~~~h~~~--~~~~--~w~cc~~------~~~~~~gc~~ 166 (169)
T 1btk_A 136 DLVQKYHPCF--WIDG--QYLCCSQ------TAKNAMGCQI 166 (169)
T ss_dssp CCCSEECSSC--EETT--EETTTCC------CCTTSCCSEE
T ss_pred chhhccCCCc--eeCC--EeccCCC------CCCCCCCCcc
Confidence 3356799998 6555 6999986 5778889973
No 12
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=74.39 E-value=1.6 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=22.8
Q ss_pred CCCCCccccCCCCcccCCCcccccCCCcccChhhhcCCCCCC
Q 027086 28 NPEGSCTFHDSGPIFHDGMKEWSCCKRRSHDFSLFLEIPGCK 69 (228)
Q Consensus 28 N~~~~C~~HpG~PvFHd~~K~WsCC~k~~~df~eFl~i~gCt 69 (228)
|..-.=.||||. |-++ .|+||+.. ...-+||.
T Consensus 134 n~~~~~~~h~~~--~~~~--~w~cc~~~------~~~~~gc~ 165 (169)
T 1btk_A 134 NSDLVQKYHPCF--WIDG--QYLCCSQT------AKNAMGCQ 165 (169)
T ss_dssp CSCCCSEECSSC--EETT--EETTTCCC------CTTSCCSE
T ss_pred CcchhhccCCCc--eeCC--EeccCCCC------CCCCCCCc
Confidence 445567899998 5454 69999963 24678886
No 13
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=56.07 E-value=13 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.497 Sum_probs=32.9
Q ss_pred ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
..+| ..||..|+++. .+...-.-||.+ |-|.-..|.| |+..-.+|.
T Consensus 3 ~y~C--~~CGyvYd~~~-Gdp~~gi~pGt~-f~~lP~dw~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 3 IYVC--TVCGYEYDPAK-GDPDSGIKPGTK-FEDLPDDWACPVCGASKDAFE 50 (52)
T ss_dssp CEEC--SSSCCCCCTTT-CCTTTTCCSSCC-TTSSCTTCCCSSSCCCTTSCE
T ss_pred cEEe--CCCCeEEcCCc-CCcccCcCCCCc-hHHCCCCCcCCCCCCcHHHcE
Confidence 4578 58999999765 334455668887 8899999999 665444553
No 14
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=55.93 E-value=8.7 Score=28.88 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=36.1
Q ss_pred ccccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 7 DALKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 7 ~~~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
.......| ..||..|+++. .+...-.-||.+ |-|.-..|.| |+..-.+|.
T Consensus 31 ~~m~~y~C--~vCGyvYD~~~-Gdp~~gI~pGT~-fedlPddW~CPvCga~K~~F~ 82 (87)
T 1s24_A 31 KAYLKWIC--ITCGHIYDEAL-GDEAEGFTPGTR-FEDIPDDWCCPDCGATKEDYV 82 (87)
T ss_dssp -CCCEEEE--TTTTEEEETTS-CCTTTTCCSCCC-GGGCCTTCCCSSSCCCGGGEE
T ss_pred cCCceEEC--CCCCeEecCCc-CCcccCcCCCCC-hhHCCCCCCCCCCCCCHHHhh
Confidence 34556789 68999999865 344566778887 8899999999 775444554
No 15
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.62 E-value=14 Score=27.47 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=35.0
Q ss_pred cccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 10 KRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 10 ~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
....| ..||..|+++. .+...-.=||.| |-|.-..|.| |+-.-.+|.
T Consensus 26 ~~y~C--~vCGyvYD~~~-Gdp~~gI~pGT~-fedlPddW~CPvCga~K~~F~ 74 (81)
T 2kn9_A 26 KLFRC--IQCGFEYDEAL-GWPEDGIAAGTR-WDDIPDDWSCPDCGAAKSDFE 74 (81)
T ss_dssp CEEEE--TTTCCEEETTT-CBTTTTBCTTCC-TTTSCTTCCCTTTCCCGGGEE
T ss_pred ceEEe--CCCCEEEcCCc-CCcccCcCCCCC-hhHCCCCCcCCCCCCCHHHcE
Confidence 35689 68999999865 344566778887 8899999999 775554554
No 16
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=52.44 E-value=16 Score=26.10 Aligned_cols=48 Identities=17% Similarity=0.478 Sum_probs=35.2
Q ss_pred ccccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 9 LKRLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 9 ~~~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
....+| ..||..|+++. .+...-.-||.| |-|.-..|.| |+..-.+|.
T Consensus 5 m~~y~C--~vCGyiYd~~~-Gdp~~gi~pGT~-f~~lPddw~CP~Cga~K~~F~ 54 (70)
T 1dx8_A 5 EGKYEC--EACGYIYEPEK-GDKFAGIPPGTP-FVDLSDSFMCPACRSPKNQFK 54 (70)
T ss_dssp SSCEEE--TTTCCEECTTT-CCTTTTCCSSCC-GGGSCTTCBCTTTCCBGGGEE
T ss_pred CceEEe--CCCCEEEcCCC-CCcccCcCCCCc-hhhCCCCCcCCCCCCCHHHce
Confidence 346789 58999999876 344566778887 8889999999 665444444
No 17
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=52.29 E-value=10 Score=25.90 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=33.9
Q ss_pred ccccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 11 RLRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 11 ~~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
..+| ..||..|+++. .+...-.-||.+ |-|.-..|.| |+..-.+|.
T Consensus 3 ~y~C--~~CGyvYd~~~-Gdp~~gi~pGt~-f~~lP~dw~CP~Cga~K~~F~ 50 (55)
T 2v3b_B 3 KWQC--VVCGFIYDEAL-GLPEEGIPAGTR-WEDIPADWVCPDCGVGKIDFE 50 (55)
T ss_dssp EEEE--TTTCCEEETTT-CBTTTTBCTTCC-GGGSCTTCCCTTTCCCGGGEE
T ss_pred cEEe--CCCCeEECCCc-CCcccCcCCCCC-hhHCCCCCcCCCCCCCHHHce
Confidence 3578 58999999865 344566778887 8999999999 775544554
No 18
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=44.47 E-value=13 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=32.7
Q ss_pred cccccCCCCceeCCCCCCCCCccccCCCCcccCCCccccc--CCCcccChh
Q 027086 12 LRCQRIGCNATFTEDDNPEGSCTFHDSGPIFHDGMKEWSC--CKRRSHDFS 60 (228)
Q Consensus 12 ~~C~n~GCg~~f~~~~N~~~~C~~HpG~PvFHd~~K~WsC--C~k~~~df~ 60 (228)
..| ..||..|+++. .+.....-||.+ |-|.-..|.| |+..-.+|.
T Consensus 3 ~~C--~~CGyvYd~~~-Gdp~~gi~pGt~-f~~lP~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 3 LSC--KICGYIYDEDE-GDPDNGISPGTK-FEDLPDDWVCPLCGAPKSEFE 49 (52)
T ss_dssp EEE--SSSSCEEETTT-CBGGGTBCTTCC-GGGSCTTCBCTTTCCBGGGEE
T ss_pred EEe--CCCCeEECCCc-CCcccCcCCCCC-HhHCCCCCcCCCCCCCHHHcE
Confidence 467 58999999865 344566778887 8899999999 665444443
No 19
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=22.87 E-value=15 Score=27.79 Aligned_cols=59 Identities=20% Similarity=0.449 Sum_probs=40.2
Q ss_pred CccccCCCCceeecCCCCCCCceecCCCccccCCCC-eeec-CCccccchhhhcCCCCCcc-ccCCCC
Q 027086 161 QICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMR-GWKC-CDIHVKEFDEFMGIPPCTK-GWHDAN 225 (228)
Q Consensus 161 ~~C~n~GC~~~~~~~~~~~~~C~yHpG~PvFHeg~K-~WsC-C~~k~~dFd~Fl~i~gC~~-G~H~~~ 225 (228)
..|+. |+.+. ....+.|.=|.=....|++.| ||.| |+.|++-++. |-..+|.. |...|+
T Consensus 16 v~C~~--C~yt~---~~~~~~C~~~~H~l~~~~a~KRFFkC~C~~Rt~sl~r-~P~~~C~~Cg~~~we 77 (92)
T 2kwq_A 16 VTCKT--CKYTH---FKPKETCVSENHDFHWHNGVKRFFKCPCGNRTISLDR-LPKKHCSTCGLFKWE 77 (92)
T ss_dssp EEETT--TCCEE---SSCCHHHHHTTCCEEEEEEECEEEECTTSCEEEESSS-SCCSCCTTTCSCCCE
T ss_pred EEccC--Cccee---cCcchhHHhcCCceEEEeeeEEEEECCCCCceeEeee-CCCCCCCCCCCCceE
Confidence 46764 87544 345677988877888999977 6666 5788888854 55556764 555564
Done!