BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027087
         (228 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54JA5|SIBC_DICDI Integrin beta-like protein C OS=Dictyostelium discoideum GN=sibC PE=1
            SV=1
          Length = 1954

 Score = 34.3 bits (77), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 146  VGDREEAIAEMEDVSISLKGYP--EVHAALAAALYVD-KHALLLAENQFTIATLLDPHYT 202
            VG+ +E +A +ED+ ISLK     E+H +LA+   +D K AL  +    T+  +   +Y 
Sbjct: 1778 VGENDENVASLEDIKISLKRMQNCELHTSLASISCLDTKSALNESIQTITVNAVTAGNYR 1837

Query: 203  DLSYVKDTKHWPPSLVSSLRH 223
               +V D  +  PS + +  H
Sbjct: 1838 LKLFVDDLGYNAPSAIRAQSH 1858


>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
          Length = 314

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 78  LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE---NYKDFAFSEY 134
           L QA +    A+     D L  L KG  L  +G +N+A++YF  V+E   N  D      
Sbjct: 231 LNQALEYTKKALKLNPDDPLLYLYKGIILNKLGKYNEAIKYFDKVLEINPNIPD------ 284

Query: 135 ARVGRALALYEVGDREEAI 153
           A  G+A+AL ++G   EAI
Sbjct: 285 AWNGKAIALEKLGKINEAI 303


>sp|Q86TZ1|TTC6_HUMAN Tetratricopeptide repeat protein 6 OS=Homo sapiens GN=TTC6 PE=2
           SV=1
          Length = 520

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 80  QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE----NYKDFAFSEYA 135
           QA+KD   A+    +     +  G  LQA G F KA  +FT+ ++    NY        A
Sbjct: 265 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY-------LA 317

Query: 136 RVGRALALYEVGDREEAIAEMEDVSISLK 164
             GRA+   ++G+     A M+D++ ++K
Sbjct: 318 YEGRAVVCLQMGNN---FAAMQDINAAMK 343


>sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium discoideum GN=ncfA PE=2
           SV=1
          Length = 604

 Score = 32.7 bits (73), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169
            +F  A++YF   VE  K  A S Y    RA+A +  G+   AI + ++    L+G+  +
Sbjct: 50  NNFRNAIEYFNRSVEQDKYLASSYYM---RAIAHHMNGELNHAIVDYDETISKLRGHEYI 106

Query: 170 HAALAAALYVDKHALLLAENQFTIATLL 197
                  L +D H LLLAE  F  A  L
Sbjct: 107 D---YKQLGLD-HKLLLAEVLFNKALAL 130


>sp|A5IY71|DNLJ_MYCAP DNA ligase OS=Mycoplasma agalactiae (strain PG2) GN=ligA PE=3 SV=1
          Length = 654

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRH 223
           K + +V  AL       + A L+A+N    A LLD H  +L  +++TK+  P ++ SL  
Sbjct: 494 KKFSKVIFALGIKHIGQRAAKLIADNYANFAELLDDH--NLLKLQNTKNIGPKIIESLIE 551

Query: 224 FIT 226
           FI+
Sbjct: 552 FIS 554


>sp|A2ACP1|TT39A_MOUSE Tetratricopeptide repeat protein 39A OS=Mus musculus GN=Ttc39a PE=2
           SV=1
          Length = 578

 Score = 30.8 bits (68), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 19/143 (13%)

Query: 31  TPLQLPLTSRRLLFFSLPFSSLLLLPNNRKITNKPSSSDAFAATYDPLTQAEKDASAAVS 90
            P+ LP+ +  +++    ++          I  +P+ +D      + +T+AE+  +    
Sbjct: 414 NPISLPIPALEMMYIWNGYAV---------IGKQPTLTDGML---EVITKAEEMLAMGPE 461

Query: 91  SRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEY----ARVGRALAL 143
           +  S   D L  L KG  L+ +G   +A + F  +  N K   +  Y    A +  AL  
Sbjct: 462 NEYSADDDCLVKLLKGLCLKYLGRIQEAEENFRSISANEKKIKYDHYLIPNALLELALLF 521

Query: 144 YEVGDREEAIAEMEDVSISLKGY 166
            E G  EEAI  +E    + K Y
Sbjct: 522 MEQGRNEEAIKLLESAKQNYKNY 544


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,445,251
Number of Sequences: 539616
Number of extensions: 3006116
Number of successful extensions: 9198
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9191
Number of HSP's gapped (non-prelim): 25
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)