Query 027087
Match_columns 228
No_of_seqs 271 out of 2189
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.8 2.4E-17 5.2E-22 128.1 14.8 121 82-209 13-133 (144)
2 COG3063 PilF Tfp pilus assembl 99.7 2.8E-16 6.1E-21 128.2 16.8 130 72-206 45-177 (250)
3 PRK10370 formate-dependent nit 99.7 7.6E-16 1.7E-20 125.8 16.3 122 79-204 56-180 (198)
4 PRK11189 lipoprotein NlpI; Pro 99.7 4.1E-15 8.8E-20 128.6 19.4 122 78-203 42-167 (296)
5 KOG4626 O-linked N-acetylgluco 99.7 3.2E-16 6.9E-21 142.6 12.6 129 73-205 365-493 (966)
6 KOG4626 O-linked N-acetylgluco 99.7 9.5E-16 2.1E-20 139.5 12.4 127 75-205 299-425 (966)
7 TIGR02552 LcrH_SycD type III s 99.6 7.7E-15 1.7E-19 111.6 14.3 116 85-204 6-121 (135)
8 PRK09782 bacteriophage N4 rece 99.6 1.5E-14 3.2E-19 142.0 18.2 141 76-224 590-730 (987)
9 TIGR00990 3a0801s09 mitochondr 99.6 7.5E-14 1.6E-18 131.8 18.9 125 75-203 344-468 (615)
10 TIGR00990 3a0801s09 mitochondr 99.6 7.6E-14 1.6E-18 131.7 17.4 127 73-203 376-502 (615)
11 PRK15359 type III secretion sy 99.6 7.7E-14 1.7E-18 108.3 14.1 105 72-179 34-138 (144)
12 PRK11189 lipoprotein NlpI; Pro 99.6 3.4E-13 7.3E-18 116.6 19.0 121 73-198 75-195 (296)
13 PRK12370 invasion protein regu 99.6 8.6E-14 1.9E-18 129.9 16.1 125 78-206 320-445 (553)
14 PRK12370 invasion protein regu 99.6 7.7E-14 1.7E-18 130.3 15.7 124 78-205 277-409 (553)
15 TIGR02521 type_IV_pilW type IV 99.5 1.8E-12 3.9E-17 104.9 18.9 131 72-206 41-173 (234)
16 TIGR03302 OM_YfiO outer membra 99.5 1.2E-12 2.5E-17 108.8 17.3 130 72-202 43-200 (235)
17 PRK15363 pathogenicity island 99.5 4.7E-13 1E-17 104.3 13.8 107 89-199 27-134 (157)
18 KOG0553 TPR repeat-containing 99.5 1.5E-13 3.3E-18 116.1 11.5 105 95-203 80-184 (304)
19 PRK15174 Vi polysaccharide exp 99.5 1.1E-12 2.4E-17 124.8 18.1 126 74-203 224-353 (656)
20 KOG0547 Translocase of outer m 99.5 2.2E-13 4.9E-18 121.3 12.3 122 75-200 373-494 (606)
21 PRK09782 bacteriophage N4 rece 99.5 1.8E-12 3.9E-17 127.5 18.6 150 73-227 553-706 (987)
22 PRK15174 Vi polysaccharide exp 99.5 2.3E-12 5.1E-17 122.6 17.7 124 80-207 268-391 (656)
23 PRK15179 Vi polysaccharide bio 99.5 2.1E-12 4.6E-17 122.8 16.3 124 72-199 96-219 (694)
24 PLN03088 SGT1, suppressor of 99.5 1.5E-12 3.3E-17 115.4 14.3 103 99-205 5-107 (356)
25 PRK15179 Vi polysaccharide bio 99.4 3.3E-12 7.1E-17 121.5 16.8 145 79-227 69-217 (694)
26 TIGR02795 tol_pal_ybgF tol-pal 99.4 6.7E-12 1.4E-16 92.5 14.2 111 96-207 2-115 (119)
27 TIGR02521 type_IV_pilW type IV 99.4 1E-11 2.3E-16 100.3 16.3 131 72-206 75-207 (234)
28 COG3063 PilF Tfp pilus assembl 99.4 3.6E-12 7.8E-17 104.3 12.9 133 72-206 79-211 (250)
29 KOG1126 DNA-binding cell divis 99.4 1.4E-12 2.9E-17 119.7 10.6 125 78-206 471-595 (638)
30 KOG1125 TPR repeat-containing 99.4 6E-12 1.3E-16 114.0 14.5 131 78-209 301-505 (579)
31 PRK11447 cellulose synthase su 99.4 9.5E-12 2.1E-16 125.2 16.9 133 72-205 279-422 (1157)
32 PF13414 TPR_11: TPR repeat; P 99.4 2.1E-12 4.6E-17 87.1 8.0 68 94-164 1-69 (69)
33 PRK11447 cellulose synthase su 99.4 1.6E-11 3.5E-16 123.5 17.3 129 74-206 363-533 (1157)
34 cd00189 TPR Tetratricopeptide 99.4 1.1E-11 2.5E-16 85.1 11.4 99 98-200 2-100 (100)
35 KOG1126 DNA-binding cell divis 99.4 1.5E-12 3.3E-17 119.4 8.3 116 84-203 409-524 (638)
36 PRK02603 photosystem I assembl 99.4 2.4E-11 5.1E-16 96.8 14.2 112 90-202 29-154 (172)
37 COG4235 Cytochrome c biogenesi 99.4 2.3E-11 5E-16 103.3 14.8 119 82-204 142-263 (287)
38 PLN02789 farnesyltranstransfer 99.4 5.4E-11 1.2E-15 103.9 16.9 131 75-209 50-183 (320)
39 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.6E-16 105.7 12.0 129 74-206 122-252 (280)
40 PRK15363 pathogenicity island 99.3 4.2E-11 9.1E-16 93.4 13.6 93 72-167 45-137 (157)
41 TIGR02917 PEP_TPR_lipo putativ 99.3 3.4E-11 7.4E-16 115.3 15.9 129 73-206 747-875 (899)
42 PLN03088 SGT1, suppressor of 99.3 3.7E-11 8.1E-16 106.5 14.5 105 73-180 13-117 (356)
43 KOG0553 TPR repeat-containing 99.3 1.1E-11 2.5E-16 104.8 10.2 105 73-180 92-196 (304)
44 PRK10049 pgaA outer membrane p 99.3 7.8E-11 1.7E-15 114.1 17.0 130 72-206 25-154 (765)
45 PRK10370 formate-dependent nit 99.3 4.9E-11 1.1E-15 97.4 12.3 97 108-207 51-149 (198)
46 CHL00033 ycf3 photosystem I as 99.3 1.6E-10 3.4E-15 91.6 14.5 109 95-203 34-155 (168)
47 KOG1155 Anaphase-promoting com 99.3 8.1E-11 1.7E-15 104.6 13.9 126 77-206 345-470 (559)
48 PF13432 TPR_16: Tetratricopep 99.3 1.5E-11 3.3E-16 82.0 7.1 65 100-167 1-65 (65)
49 TIGR03302 OM_YfiO outer membra 99.3 1E-10 2.2E-15 97.1 13.4 114 91-204 28-151 (235)
50 KOG1155 Anaphase-promoting com 99.3 1.6E-10 3.4E-15 102.8 15.0 122 72-197 374-495 (559)
51 PLN02789 farnesyltranstransfer 99.3 2E-10 4.4E-15 100.3 15.6 126 78-206 88-221 (320)
52 KOG1125 TPR repeat-containing 99.3 1.8E-11 3.9E-16 111.0 9.1 114 84-201 416-531 (579)
53 TIGR02917 PEP_TPR_lipo putativ 99.3 2.2E-10 4.7E-15 109.8 17.0 130 73-206 136-265 (899)
54 PRK11788 tetratricopeptide rep 99.2 3.2E-10 6.9E-15 100.6 15.7 128 74-205 192-319 (389)
55 PRK10803 tol-pal system protei 99.2 3.8E-10 8.3E-15 96.0 14.9 110 96-206 142-255 (263)
56 TIGR02552 LcrH_SycD type III s 99.2 2.5E-10 5.4E-15 86.6 12.1 95 72-169 27-121 (135)
57 PRK10049 pgaA outer membrane p 99.2 3.9E-10 8.4E-15 109.2 16.2 132 74-209 322-468 (765)
58 KOG0548 Molecular co-chaperone 99.2 2.5E-10 5.5E-15 102.9 13.4 111 90-204 352-462 (539)
59 KOG0624 dsRNA-activated protei 99.2 2.5E-10 5.5E-15 98.5 12.6 149 76-228 52-219 (504)
60 COG5010 TadD Flp pilus assembl 99.2 5.2E-10 1.1E-14 93.1 13.9 111 90-204 94-204 (257)
61 PF13429 TPR_15: Tetratricopep 99.2 9.2E-11 2E-15 100.2 9.8 122 72-197 156-277 (280)
62 PRK11788 tetratricopeptide rep 99.2 8.9E-10 1.9E-14 97.7 16.0 120 78-201 157-282 (389)
63 KOG1173 Anaphase-promoting com 99.2 1.9E-10 4.2E-15 104.2 11.6 129 74-203 392-524 (611)
64 PF13414 TPR_11: TPR repeat; P 99.2 1.3E-10 2.9E-15 78.2 8.0 65 135-199 5-69 (69)
65 PRK10866 outer membrane biogen 99.2 5.1E-09 1.1E-13 88.2 19.1 130 73-203 43-210 (243)
66 COG5010 TadD Flp pilus assembl 99.2 7.8E-10 1.7E-14 92.1 13.7 116 74-193 112-227 (257)
67 PF09976 TPR_21: Tetratricopep 99.2 1.4E-09 3E-14 84.3 14.2 116 78-195 27-145 (145)
68 PF12895 Apc3: Anaphase-promot 99.1 2.9E-10 6.2E-15 79.9 8.1 84 108-194 1-84 (84)
69 KOG0547 Translocase of outer m 99.1 6.6E-10 1.4E-14 99.4 12.1 123 78-204 342-464 (606)
70 PRK10153 DNA-binding transcrip 99.1 2E-09 4.3E-14 99.7 15.2 126 80-210 360-495 (517)
71 PF13432 TPR_16: Tetratricopep 99.1 2.6E-10 5.7E-15 76.0 6.7 65 137-202 1-65 (65)
72 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 5.6E-10 1.2E-14 99.9 10.4 72 91-162 70-141 (453)
73 KOG3060 Uncharacterized conser 99.1 2.7E-09 5.9E-14 88.7 13.2 131 73-206 97-229 (289)
74 COG4783 Putative Zn-dependent 99.1 5.5E-09 1.2E-13 93.6 14.7 127 73-203 317-443 (484)
75 PF12688 TPR_5: Tetratrico pep 99.1 7.7E-09 1.7E-13 77.8 13.3 99 97-196 2-103 (120)
76 PRK14574 hmsH outer membrane p 99.0 7E-09 1.5E-13 100.7 16.3 126 74-203 46-171 (822)
77 KOG4162 Predicted calmodulin-b 99.0 7.5E-09 1.6E-13 96.8 15.4 129 74-206 662-792 (799)
78 TIGR02795 tol_pal_ybgF tol-pal 99.0 8E-09 1.7E-13 75.9 12.7 98 73-170 13-113 (119)
79 cd05804 StaR_like StaR_like; a 99.0 6.2E-09 1.3E-13 91.2 14.1 106 90-199 108-217 (355)
80 PF14559 TPR_19: Tetratricopep 99.0 1.1E-09 2.4E-14 73.4 7.1 67 106-175 1-67 (68)
81 PF13525 YfiO: Outer membrane 99.0 8.8E-09 1.9E-13 84.4 13.8 110 95-204 4-126 (203)
82 PF13371 TPR_9: Tetratricopept 99.0 2.4E-09 5.3E-14 72.7 8.8 68 103-173 2-69 (73)
83 COG1729 Uncharacterized protei 99.0 6.8E-09 1.5E-13 87.3 13.1 108 98-206 143-253 (262)
84 PF12895 Apc3: Anaphase-promot 99.0 1.3E-09 2.9E-14 76.4 6.8 80 76-159 3-84 (84)
85 KOG1129 TPR repeat-containing 99.0 3.5E-09 7.6E-14 91.0 10.5 129 78-207 340-468 (478)
86 KOG4648 Uncharacterized conser 99.0 1.3E-09 2.9E-14 94.1 7.8 103 99-205 100-202 (536)
87 KOG0624 dsRNA-activated protei 99.0 3.1E-09 6.6E-14 91.9 9.5 109 91-203 33-141 (504)
88 PRK15331 chaperone protein Sic 99.0 1.2E-08 2.6E-13 80.2 11.8 106 90-200 31-136 (165)
89 PF13512 TPR_18: Tetratricopep 99.0 3.6E-08 7.8E-13 75.8 13.7 110 95-204 9-135 (142)
90 PRK14574 hmsH outer membrane p 98.9 1.9E-08 4.1E-13 97.6 15.1 127 74-206 80-207 (822)
91 PRK11906 transcriptional regul 98.9 1.9E-08 4.2E-13 90.3 13.9 123 78-204 274-408 (458)
92 PRK10803 tol-pal system protei 98.9 2.4E-08 5.2E-13 85.0 13.8 94 76-169 157-253 (263)
93 cd05804 StaR_like StaR_like; a 98.9 2.1E-08 4.6E-13 87.9 13.3 129 73-203 54-183 (355)
94 KOG0543 FKBP-type peptidyl-pro 98.9 1.3E-08 2.7E-13 89.6 11.2 108 96-204 208-327 (397)
95 PRK10866 outer membrane biogen 98.9 3.8E-08 8.3E-13 82.9 13.8 110 94-203 30-159 (243)
96 KOG2002 TPR-containing nuclear 98.9 8.8E-09 1.9E-13 98.3 10.7 126 78-207 628-755 (1018)
97 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 9.5E-09 2.1E-13 92.2 8.7 73 125-201 70-146 (453)
98 cd00189 TPR Tetratricopeptide 98.9 2.9E-08 6.2E-13 67.8 9.4 84 75-161 13-96 (100)
99 COG4785 NlpI Lipoprotein NlpI, 98.8 2.7E-08 5.9E-13 81.3 10.2 118 94-215 63-183 (297)
100 KOG4555 TPR repeat-containing 98.8 7.8E-08 1.7E-12 72.8 11.9 104 99-206 46-153 (175)
101 PF13424 TPR_12: Tetratricopep 98.8 1.8E-08 3.9E-13 69.4 8.1 70 93-162 2-75 (78)
102 KOG2076 RNA polymerase III tra 98.8 1.2E-07 2.6E-12 90.1 15.3 120 76-199 153-272 (895)
103 KOG2003 TPR repeat-containing 98.8 1.3E-08 2.9E-13 90.7 8.2 122 79-204 473-594 (840)
104 KOG0548 Molecular co-chaperone 98.8 4.2E-08 9.1E-13 88.7 11.3 116 74-193 370-485 (539)
105 KOG0550 Molecular chaperone (D 98.8 1.3E-08 2.9E-13 89.6 7.7 123 77-200 218-353 (486)
106 PRK11906 transcriptional regul 98.8 8.9E-08 1.9E-12 86.1 13.0 112 78-194 320-433 (458)
107 CHL00033 ycf3 photosystem I as 98.8 1.3E-07 2.7E-12 74.9 11.7 84 73-159 46-139 (168)
108 PF13525 YfiO: Outer membrane 98.8 4.8E-07 1E-11 74.0 15.0 131 73-204 16-177 (203)
109 PRK02603 photosystem I assembl 98.7 2.8E-07 6.1E-12 73.3 12.8 75 72-149 45-122 (172)
110 KOG2076 RNA polymerase III tra 98.7 2.4E-07 5.3E-12 88.1 14.1 107 96-206 139-245 (895)
111 KOG0543 FKBP-type peptidyl-pro 98.7 1.4E-07 3E-12 83.2 11.5 101 97-200 258-358 (397)
112 COG4783 Putative Zn-dependent 98.7 3.9E-07 8.6E-12 81.8 14.1 113 90-206 300-412 (484)
113 KOG1840 Kinesin light chain [C 98.7 4.2E-07 9.1E-12 83.7 14.6 127 72-199 251-398 (508)
114 KOG3060 Uncharacterized conser 98.7 7.2E-07 1.6E-11 74.4 14.5 128 72-203 62-189 (289)
115 KOG0550 Molecular chaperone (D 98.7 1.2E-07 2.7E-12 83.6 10.6 98 78-179 265-366 (486)
116 TIGR00540 hemY_coli hemY prote 98.7 9.1E-07 2E-11 79.8 16.6 126 72-201 94-220 (409)
117 TIGR00540 hemY_coli hemY prote 98.7 4.1E-07 8.8E-12 82.1 14.0 117 86-204 249-373 (409)
118 KOG1173 Anaphase-promoting com 98.7 3.8E-07 8.2E-12 83.2 13.0 118 85-206 301-418 (611)
119 PRK10747 putative protoheme IX 98.7 1.2E-06 2.7E-11 78.7 15.9 126 72-201 128-296 (398)
120 PF13512 TPR_18: Tetratricopep 98.6 6.8E-07 1.5E-11 68.8 11.5 96 72-167 20-133 (142)
121 KOG1129 TPR repeat-containing 98.6 2.7E-07 5.9E-12 79.6 10.1 120 76-199 270-389 (478)
122 PRK10153 DNA-binding transcrip 98.6 1.8E-06 3.9E-11 80.2 16.3 127 96-227 339-482 (517)
123 PF13371 TPR_9: Tetratricopept 98.6 1.9E-07 4.2E-12 63.2 7.4 69 140-209 2-70 (73)
124 PF06552 TOM20_plant: Plant sp 98.6 3.9E-07 8.4E-12 72.5 10.0 86 80-168 9-115 (186)
125 COG4235 Cytochrome c biogenesi 98.6 5.5E-07 1.2E-11 76.7 11.4 95 110-207 136-232 (287)
126 PRK15331 chaperone protein Sic 98.6 6.8E-07 1.5E-11 70.3 11.0 87 72-161 47-133 (165)
127 KOG2003 TPR repeat-containing 98.6 8.5E-07 1.8E-11 79.4 12.8 122 76-201 504-625 (840)
128 PRK10747 putative protoheme IX 98.6 9.2E-07 2E-11 79.6 13.0 107 90-203 257-363 (398)
129 KOG1174 Anaphase-promoting com 98.6 3.1E-07 6.8E-12 81.2 9.4 123 78-204 316-440 (564)
130 KOG1128 Uncharacterized conser 98.6 3.4E-07 7.3E-12 85.6 9.7 122 78-203 501-622 (777)
131 KOG2002 TPR-containing nuclear 98.6 5.6E-07 1.2E-11 86.3 11.1 108 96-206 307-418 (1018)
132 PRK14720 transcript cleavage f 98.5 1.3E-06 2.9E-11 84.9 13.3 117 74-197 43-178 (906)
133 KOG4234 TPR repeat-containing 98.5 1.9E-06 4.2E-11 69.8 11.9 106 98-204 97-204 (271)
134 KOG1174 Anaphase-promoting com 98.5 2.8E-06 6.1E-11 75.3 13.7 127 73-204 345-507 (564)
135 KOG1840 Kinesin light chain [C 98.5 1.2E-06 2.5E-11 80.8 11.5 107 90-200 193-315 (508)
136 PF12688 TPR_5: Tetratrico pep 98.5 4.1E-06 8.8E-11 63.0 12.5 84 73-159 12-101 (120)
137 COG1729 Uncharacterized protei 98.5 3.5E-06 7.7E-11 71.0 13.0 94 76-169 155-251 (262)
138 COG2956 Predicted N-acetylgluc 98.5 4.8E-06 1.1E-10 71.7 13.9 124 76-203 155-284 (389)
139 KOG4642 Chaperone-dependent E3 98.5 7.5E-07 1.6E-11 73.7 8.5 95 99-197 13-107 (284)
140 PF13428 TPR_14: Tetratricopep 98.5 3.4E-07 7.3E-12 56.3 5.0 42 97-141 2-43 (44)
141 PF13431 TPR_17: Tetratricopep 98.5 1.5E-07 3.4E-12 54.7 3.0 34 118-154 1-34 (34)
142 COG4785 NlpI Lipoprotein NlpI, 98.5 1.4E-06 3.1E-11 71.3 9.6 84 81-167 84-167 (297)
143 PF06552 TOM20_plant: Plant sp 98.4 1.6E-06 3.5E-11 69.0 9.4 91 112-205 7-117 (186)
144 PF13424 TPR_12: Tetratricopep 98.4 4.5E-07 9.7E-12 62.3 5.4 63 135-198 7-76 (78)
145 PF04733 Coatomer_E: Coatomer 98.4 3.2E-06 6.9E-11 73.1 11.7 130 72-204 141-272 (290)
146 KOG1127 TPR repeat-containing 98.4 7.2E-07 1.6E-11 85.8 8.1 128 78-206 474-634 (1238)
147 PF14559 TPR_19: Tetratricopep 98.4 6.4E-07 1.4E-11 59.7 5.7 64 75-141 4-67 (68)
148 COG4105 ComL DNA uptake lipopr 98.4 1.8E-05 4E-10 66.3 15.1 108 95-202 33-150 (254)
149 COG2956 Predicted N-acetylgluc 98.4 7.2E-06 1.6E-10 70.7 12.8 125 76-204 194-318 (389)
150 PRK14720 transcript cleavage f 98.4 3.1E-06 6.7E-11 82.4 12.0 109 90-204 25-152 (906)
151 PF00515 TPR_1: Tetratricopept 98.4 6.7E-07 1.4E-11 51.6 4.6 34 96-129 1-34 (34)
152 KOG0545 Aryl-hydrocarbon recep 98.3 5.7E-06 1.2E-10 68.9 10.4 107 97-204 179-300 (329)
153 PF07719 TPR_2: Tetratricopept 98.3 1.8E-06 3.9E-11 49.5 5.3 34 96-129 1-34 (34)
154 KOG4555 TPR repeat-containing 98.3 1.2E-05 2.5E-10 61.1 10.5 91 75-165 56-147 (175)
155 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.1E-10 70.3 14.3 110 76-192 183-292 (395)
156 KOG1128 Uncharacterized conser 98.3 4.2E-06 9.1E-11 78.4 9.4 103 95-201 484-586 (777)
157 PF09976 TPR_21: Tetratricopep 98.3 4.6E-05 1E-09 58.8 13.9 97 96-193 11-110 (145)
158 COG4700 Uncharacterized protei 98.3 3.5E-05 7.6E-10 62.0 13.1 124 74-203 69-195 (251)
159 KOG1156 N-terminal acetyltrans 98.2 1.4E-05 2.9E-10 74.2 11.7 120 75-198 54-173 (700)
160 KOG1156 N-terminal acetyltrans 98.2 1.1E-05 2.5E-10 74.7 10.5 123 78-204 23-145 (700)
161 KOG4234 TPR repeat-containing 98.2 1.7E-05 3.8E-10 64.3 10.1 94 78-174 111-209 (271)
162 PF13428 TPR_14: Tetratricopep 98.1 7.5E-06 1.6E-10 50.2 5.6 41 135-175 3-43 (44)
163 PF13431 TPR_17: Tetratricopep 98.1 2E-06 4.3E-11 50.0 2.7 33 85-117 2-34 (34)
164 PF14938 SNAP: Soluble NSF att 98.1 4.1E-05 8.9E-10 65.8 12.1 125 79-204 91-232 (282)
165 KOG0495 HAT repeat protein [RN 98.1 5E-05 1.1E-09 70.9 13.0 123 76-202 665-787 (913)
166 KOG4162 Predicted calmodulin-b 98.1 1.7E-05 3.7E-10 74.8 9.9 92 73-167 695-788 (799)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.8E-05 6.1E-10 69.8 10.6 83 74-159 212-294 (395)
168 KOG4642 Chaperone-dependent E3 98.1 2.5E-05 5.5E-10 64.8 8.5 96 78-176 26-126 (284)
169 KOG1127 TPR repeat-containing 98.0 3.1E-05 6.8E-10 74.9 10.3 96 76-174 576-671 (1238)
170 KOG4648 Uncharacterized conser 98.0 1.6E-05 3.5E-10 69.2 7.3 99 72-173 107-205 (536)
171 KOG0376 Serine-threonine phosp 98.0 6.6E-06 1.4E-10 74.1 4.7 101 73-176 15-115 (476)
172 KOG2376 Signal recognition par 98.0 6.8E-05 1.5E-09 69.1 11.2 123 76-206 26-148 (652)
173 PF04733 Coatomer_E: Coatomer 98.0 2.7E-05 5.9E-10 67.3 8.3 108 94-205 129-238 (290)
174 KOG0495 HAT repeat protein [RN 98.0 8.5E-05 1.8E-09 69.4 11.8 108 95-206 650-757 (913)
175 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00071 1.5E-08 52.3 15.6 119 78-200 111-234 (291)
176 COG4105 ComL DNA uptake lipopr 98.0 0.0005 1.1E-08 57.8 15.1 130 73-203 45-202 (254)
177 PF14938 SNAP: Soluble NSF att 98.0 0.00022 4.7E-09 61.3 13.4 127 75-203 48-190 (282)
178 PF12569 NARP1: NMDA receptor- 97.9 0.00026 5.7E-09 65.8 13.8 127 73-204 205-341 (517)
179 PF13181 TPR_8: Tetratricopept 97.9 2.5E-05 5.5E-10 44.7 4.7 34 96-129 1-34 (34)
180 KOG0376 Serine-threonine phosp 97.9 1.3E-05 2.8E-10 72.2 5.0 104 99-206 7-110 (476)
181 COG4700 Uncharacterized protei 97.9 0.0008 1.7E-08 54.3 13.7 137 73-215 100-239 (251)
182 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0012 2.6E-08 51.0 14.3 121 76-200 73-199 (291)
183 PF10300 DUF3808: Protein of u 97.8 0.00033 7.1E-09 64.5 12.4 121 78-199 249-378 (468)
184 COG2976 Uncharacterized protei 97.8 0.00048 1E-08 55.7 11.1 104 98-205 91-196 (207)
185 PF12569 NARP1: NMDA receptor- 97.8 0.00047 1E-08 64.1 12.6 98 97-198 195-292 (517)
186 KOG1308 Hsp70-interacting prot 97.8 2.1E-05 4.5E-10 68.3 3.4 99 107-209 125-223 (377)
187 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00031 6.7E-09 61.0 10.4 112 90-202 74-187 (390)
188 PF00515 TPR_1: Tetratricopept 97.7 7.7E-05 1.7E-09 42.7 4.4 31 135-165 3-33 (34)
189 KOG2376 Signal recognition par 97.7 0.0014 3E-08 60.7 13.9 128 73-204 90-260 (652)
190 KOG4340 Uncharacterized conser 97.7 0.00062 1.4E-08 58.6 10.7 126 77-206 25-182 (459)
191 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.9E-09 41.5 4.7 31 135-165 3-33 (34)
192 PF03704 BTAD: Bacterial trans 97.6 0.0017 3.8E-08 49.7 12.5 95 100-195 10-123 (146)
193 KOG3785 Uncharacterized conser 97.6 0.00083 1.8E-08 59.0 11.0 99 97-203 58-186 (557)
194 PF04184 ST7: ST7 protein; In 97.6 0.0031 6.7E-08 57.6 14.9 101 100-204 263-382 (539)
195 PF13174 TPR_6: Tetratricopept 97.6 0.00016 3.4E-09 40.8 4.2 32 98-129 2-33 (33)
196 KOG1308 Hsp70-interacting prot 97.5 7.2E-05 1.6E-09 65.0 3.6 95 76-174 128-222 (377)
197 KOG2796 Uncharacterized conser 97.5 0.0014 3E-08 55.6 10.8 113 87-203 202-321 (366)
198 PLN03081 pentatricopeptide (PP 97.5 0.002 4.4E-08 62.0 13.7 57 136-196 363-419 (697)
199 PRK04841 transcriptional regul 97.5 0.0033 7.2E-08 62.0 15.3 124 75-199 465-604 (903)
200 KOG1130 Predicted G-alpha GTPa 97.5 0.00019 4.2E-09 64.0 5.8 122 75-197 108-264 (639)
201 KOG3081 Vesicle coat complex C 97.5 0.0056 1.2E-07 51.8 14.2 119 98-226 171-293 (299)
202 KOG4340 Uncharacterized conser 97.5 0.001 2.2E-08 57.3 9.8 71 89-162 135-207 (459)
203 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.2E-08 56.2 11.0 123 78-204 17-143 (280)
204 COG3071 HemY Uncharacterized e 97.5 0.0013 2.8E-08 58.2 10.5 118 72-197 273-390 (400)
205 COG3118 Thioredoxin domain-con 97.4 0.0073 1.6E-07 51.8 14.5 103 97-203 135-271 (304)
206 PF09613 HrpB1_HrpK: Bacterial 97.4 0.0047 1E-07 48.5 12.3 78 99-179 13-90 (160)
207 PF03704 BTAD: Bacterial trans 97.4 0.0014 3E-08 50.3 9.3 64 96-162 62-125 (146)
208 PF13176 TPR_7: Tetratricopept 97.4 0.00035 7.6E-09 40.8 4.5 29 98-126 1-29 (36)
209 KOG1130 Predicted G-alpha GTPa 97.4 0.00013 2.8E-09 65.1 3.4 121 78-199 171-306 (639)
210 PF14561 TPR_20: Tetratricopep 97.4 0.002 4.4E-08 45.8 9.0 48 82-129 8-55 (90)
211 PLN03077 Protein ECB2; Provisi 97.4 0.0089 1.9E-07 58.9 16.6 132 76-215 568-709 (857)
212 PRK10941 hypothetical protein; 97.4 0.0027 5.9E-08 54.3 10.9 71 98-171 183-253 (269)
213 PRK04841 transcriptional regul 97.4 0.009 1.9E-07 58.9 16.1 125 75-200 504-644 (903)
214 PLN03218 maturation of RBCL 1; 97.3 0.011 2.4E-07 59.6 16.4 95 96-195 614-711 (1060)
215 smart00028 TPR Tetratricopepti 97.2 0.00051 1.1E-08 37.1 3.6 32 97-128 2-33 (34)
216 PLN03077 Protein ECB2; Provisi 97.2 0.0088 1.9E-07 59.0 14.3 118 73-200 535-656 (857)
217 PF05843 Suf: Suppressor of fo 97.2 0.013 2.7E-07 50.4 13.5 102 97-202 2-104 (280)
218 PF13174 TPR_6: Tetratricopept 97.1 0.0009 2E-08 37.6 4.0 31 135-165 2-32 (33)
219 COG3071 HemY Uncharacterized e 97.1 0.02 4.4E-07 50.8 13.8 106 94-206 261-366 (400)
220 PLN03218 maturation of RBCL 1; 97.1 0.04 8.7E-07 55.7 17.7 116 78-198 488-609 (1060)
221 PLN03081 pentatricopeptide (PP 97.1 0.019 4.1E-07 55.3 14.9 100 98-204 428-530 (697)
222 PF14561 TPR_20: Tetratricopep 97.1 0.009 2E-07 42.5 9.6 75 115-193 7-83 (90)
223 KOG2610 Uncharacterized conser 97.0 0.012 2.6E-07 51.6 11.3 91 85-175 126-217 (491)
224 KOG0545 Aryl-hydrocarbon recep 97.0 0.018 3.8E-07 48.5 11.7 65 97-167 231-295 (329)
225 KOG2053 Mitochondrial inherita 96.9 0.023 4.9E-07 55.1 13.6 124 78-206 25-148 (932)
226 PF13176 TPR_7: Tetratricopept 96.9 0.0024 5.1E-08 37.2 4.6 26 135-160 1-26 (36)
227 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0053 1.2E-07 39.2 6.3 39 98-139 3-41 (53)
228 PF13181 TPR_8: Tetratricopept 96.9 0.003 6.5E-08 35.8 4.7 30 135-164 3-32 (34)
229 KOG3824 Huntingtin interacting 96.9 0.004 8.7E-08 53.9 7.1 77 96-175 116-192 (472)
230 PF13281 DUF4071: Domain of un 96.9 0.018 3.9E-07 51.4 11.5 105 95-202 140-260 (374)
231 KOG1070 rRNA processing protei 96.8 0.023 4.9E-07 57.6 12.9 103 97-203 1531-1635(1710)
232 KOG4507 Uncharacterized conser 96.8 0.0027 5.8E-08 59.0 6.1 99 103-204 614-712 (886)
233 KOG1070 rRNA processing protei 96.8 0.051 1.1E-06 55.1 15.1 121 76-200 1544-1666(1710)
234 KOG3081 Vesicle coat complex C 96.8 0.028 6.1E-07 47.7 11.4 104 97-206 138-245 (299)
235 COG3118 Thioredoxin domain-con 96.7 0.098 2.1E-06 45.0 14.4 102 75-179 147-284 (304)
236 KOG2610 Uncharacterized conser 96.7 0.011 2.3E-07 51.9 8.6 101 99-206 106-213 (491)
237 KOG3785 Uncharacterized conser 96.7 0.0067 1.4E-07 53.5 7.4 85 106-194 32-117 (557)
238 KOG2053 Mitochondrial inherita 96.7 0.014 3E-07 56.5 9.9 90 107-201 20-110 (932)
239 PF09613 HrpB1_HrpK: Bacterial 96.6 0.02 4.4E-07 45.0 9.0 101 74-179 22-122 (160)
240 TIGR02561 HrpB1_HrpK type III 96.6 0.083 1.8E-06 41.1 12.1 97 99-200 13-109 (153)
241 KOG1310 WD40 repeat protein [G 96.6 0.01 2.2E-07 54.7 8.1 101 95-199 373-476 (758)
242 KOG0551 Hsp90 co-chaperone CNS 96.6 0.016 3.5E-07 50.6 8.7 62 95-159 118-179 (390)
243 KOG1586 Protein required for f 96.5 0.11 2.4E-06 43.5 12.9 107 99-206 116-233 (288)
244 PF13374 TPR_10: Tetratricopep 96.5 0.0083 1.8E-07 35.3 4.8 28 98-125 4-31 (42)
245 KOG2796 Uncharacterized conser 96.4 0.023 5.1E-07 48.3 8.4 76 97-175 253-331 (366)
246 PF12862 Apc5: Anaphase-promot 96.3 0.029 6.3E-07 40.0 7.8 60 106-165 8-73 (94)
247 COG4976 Predicted methyltransf 96.3 0.0063 1.4E-07 50.6 4.4 47 83-129 16-62 (287)
248 smart00028 TPR Tetratricopepti 96.2 0.0095 2.1E-07 31.7 3.9 27 135-161 3-29 (34)
249 KOG3824 Huntingtin interacting 96.2 0.027 5.8E-07 48.9 8.2 72 136-208 119-190 (472)
250 PF04184 ST7: ST7 protein; In 96.1 0.056 1.2E-06 49.6 10.2 116 75-193 181-320 (539)
251 PF12968 DUF3856: Domain of Un 96.1 0.39 8.5E-06 36.1 14.1 100 97-197 8-129 (144)
252 KOG3364 Membrane protein invol 96.1 0.077 1.7E-06 40.6 9.3 72 135-209 34-112 (149)
253 COG3898 Uncharacterized membra 96.0 0.2 4.3E-06 45.0 12.6 49 73-121 165-213 (531)
254 PRK10941 hypothetical protein; 96.0 0.063 1.4E-06 45.9 9.4 74 135-209 183-256 (269)
255 PF13374 TPR_10: Tetratricopep 96.0 0.021 4.6E-07 33.4 4.8 28 135-162 4-31 (42)
256 PF08424 NRDE-2: NRDE-2, neces 95.9 0.55 1.2E-05 41.1 15.3 111 84-197 7-131 (321)
257 KOG2471 TPR repeat-containing 95.9 0.014 3.1E-07 53.3 5.3 82 96-180 283-382 (696)
258 PF10602 RPN7: 26S proteasome 95.8 0.17 3.7E-06 40.5 10.8 103 96-202 36-144 (177)
259 KOG2396 HAT (Half-A-TPR) repea 95.7 0.1 2.2E-06 48.0 10.0 85 84-171 93-178 (568)
260 COG0790 FOG: TPR repeat, SEL1 95.6 0.5 1.1E-05 40.2 13.7 104 90-199 103-222 (292)
261 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.07 1.5E-06 34.0 6.2 36 136-171 4-39 (53)
262 KOG4507 Uncharacterized conser 95.6 0.12 2.7E-06 48.4 10.1 100 75-177 620-720 (886)
263 KOG1586 Protein required for f 95.6 0.48 1E-05 39.8 12.5 108 98-206 76-192 (288)
264 COG3914 Spy Predicted O-linked 95.5 0.26 5.6E-06 46.1 11.8 111 90-204 59-178 (620)
265 KOG1585 Protein required for f 95.5 0.32 6.8E-06 41.1 11.3 108 97-206 32-148 (308)
266 COG2912 Uncharacterized conser 95.5 0.13 2.7E-06 43.9 9.1 70 99-171 184-253 (269)
267 PF13281 DUF4071: Domain of un 95.5 0.23 5E-06 44.4 11.2 122 76-202 196-339 (374)
268 KOG1915 Cell cycle control pro 95.4 0.33 7.2E-06 44.6 12.1 109 87-202 98-208 (677)
269 PF10300 DUF3808: Protein of u 95.4 0.14 3.1E-06 47.2 10.1 89 108-200 245-337 (468)
270 PF12968 DUF3856: Domain of Un 95.2 0.19 4.2E-06 37.7 8.2 85 76-160 23-127 (144)
271 TIGR02561 HrpB1_HrpK type III 95.2 0.14 3E-06 39.9 7.7 72 76-150 24-95 (153)
272 KOG1915 Cell cycle control pro 94.9 0.49 1.1E-05 43.5 11.6 119 78-203 123-242 (677)
273 COG4976 Predicted methyltransf 94.9 0.056 1.2E-06 45.1 5.2 59 105-166 4-62 (287)
274 PF07721 TPR_4: Tetratricopept 94.9 0.037 8.1E-07 29.6 2.8 23 135-157 3-25 (26)
275 PF07721 TPR_4: Tetratricopept 94.8 0.046 1E-06 29.3 3.1 24 97-120 2-25 (26)
276 PF04781 DUF627: Protein of un 94.8 0.46 1E-05 35.0 9.2 95 102-197 2-107 (111)
277 KOG2300 Uncharacterized conser 94.7 0.51 1.1E-05 43.5 11.1 100 95-198 366-475 (629)
278 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.25 5.4E-06 34.2 7.1 59 98-156 8-66 (80)
279 PRK13184 pknD serine/threonine 94.6 0.34 7.4E-06 48.3 10.8 101 103-206 482-590 (932)
280 COG3629 DnrI DNA-binding trans 94.6 0.41 8.8E-06 41.2 10.0 63 95-160 152-214 (280)
281 PRK15180 Vi polysaccharide bio 94.6 0.28 6.2E-06 45.1 9.4 120 78-201 305-424 (831)
282 KOG2396 HAT (Half-A-TPR) repea 94.6 0.52 1.1E-05 43.5 11.0 88 114-204 89-176 (568)
283 PF09986 DUF2225: Uncharacteri 94.5 1.1 2.3E-05 37.0 12.1 65 96-160 118-192 (214)
284 KOG2471 TPR repeat-containing 94.5 0.13 2.8E-06 47.3 6.9 114 92-206 236-373 (696)
285 PF02259 FAT: FAT domain; Int 94.4 2 4.2E-05 37.2 14.3 112 92-206 142-296 (352)
286 KOG1550 Extracellular protein 94.4 1 2.2E-05 42.5 13.1 97 95-199 287-395 (552)
287 PF07720 TPR_3: Tetratricopept 94.3 0.19 4.1E-06 29.3 5.1 31 98-128 3-35 (36)
288 COG3914 Spy Predicted O-linked 94.3 0.98 2.1E-05 42.4 12.3 93 78-173 83-182 (620)
289 PF09986 DUF2225: Uncharacteri 94.2 0.77 1.7E-05 37.9 10.6 96 106-202 87-199 (214)
290 PF10516 SHNi-TPR: SHNi-TPR; 94.1 0.099 2.2E-06 30.9 3.7 30 97-126 2-31 (38)
291 KOG1310 WD40 repeat protein [G 94.0 0.3 6.5E-06 45.4 8.2 83 79-167 391-476 (758)
292 COG2976 Uncharacterized protei 93.9 0.51 1.1E-05 38.4 8.5 64 96-163 126-189 (207)
293 PF08631 SPO22: Meiosis protei 93.9 3.7 8E-05 35.0 15.1 124 74-198 5-151 (278)
294 KOG1941 Acetylcholine receptor 93.8 0.3 6.4E-06 43.5 7.6 101 97-198 123-236 (518)
295 COG4649 Uncharacterized protei 93.7 3.1 6.6E-05 33.6 15.5 117 76-196 72-195 (221)
296 PF10373 EST1_DNA_bind: Est1 D 93.7 0.37 8E-06 40.6 8.0 62 81-145 1-62 (278)
297 KOG1550 Extracellular protein 93.6 0.73 1.6E-05 43.5 10.5 112 80-198 230-358 (552)
298 KOG2300 Uncharacterized conser 93.4 1.4 3E-05 40.7 11.3 118 81-203 28-158 (629)
299 KOG2047 mRNA splicing factor [ 93.3 1.3 2.9E-05 42.2 11.3 98 96-199 477-581 (835)
300 PF07079 DUF1347: Protein of u 93.2 0.56 1.2E-05 42.8 8.5 70 103-179 469-540 (549)
301 KOG3364 Membrane protein invol 93.2 2.3 5E-05 32.7 10.5 74 96-171 32-109 (149)
302 PRK13184 pknD serine/threonine 93.1 2.2 4.7E-05 42.8 13.1 121 77-204 490-627 (932)
303 PF08424 NRDE-2: NRDE-2, neces 93.1 4.7 0.0001 35.3 14.1 115 80-198 49-184 (321)
304 KOG1941 Acetylcholine receptor 93.0 0.66 1.4E-05 41.4 8.4 101 97-198 163-276 (518)
305 COG0790 FOG: TPR repeat, SEL1 92.6 5.7 0.00012 33.7 14.8 117 78-202 129-271 (292)
306 PF02259 FAT: FAT domain; Int 92.5 6.5 0.00014 33.9 14.5 130 72-201 156-342 (352)
307 PF11207 DUF2989: Protein of u 92.3 1.2 2.7E-05 36.4 8.6 55 94-152 139-197 (203)
308 COG3898 Uncharacterized membra 91.9 5.1 0.00011 36.3 12.6 116 80-202 247-363 (531)
309 PF04910 Tcf25: Transcriptiona 91.9 5 0.00011 35.8 12.9 109 87-196 31-167 (360)
310 KOG1585 Protein required for f 91.8 2.5 5.5E-05 35.8 10.1 92 98-193 73-175 (308)
311 PF08631 SPO22: Meiosis protei 91.5 4.1 9E-05 34.7 11.6 100 106-205 3-124 (278)
312 KOG0530 Protein farnesyltransf 91.4 1.4 3E-05 37.7 8.2 116 86-204 102-223 (318)
313 PF07720 TPR_3: Tetratricopept 91.4 0.77 1.7E-05 26.7 4.9 20 136-155 4-23 (36)
314 KOG4814 Uncharacterized conser 91.2 2.3 5.1E-05 40.5 10.1 100 98-198 356-458 (872)
315 PF10579 Rapsyn_N: Rapsyn N-te 91.1 3.1 6.8E-05 28.8 8.3 62 135-197 8-72 (80)
316 PF10373 EST1_DNA_bind: Est1 D 91.0 0.77 1.7E-05 38.6 6.6 62 115-179 1-62 (278)
317 TIGR03504 FimV_Cterm FimV C-te 91.0 0.92 2E-05 27.7 5.1 25 136-160 2-26 (44)
318 COG4941 Predicted RNA polymera 90.8 1.3 2.8E-05 39.1 7.6 96 109-209 309-406 (415)
319 COG2912 Uncharacterized conser 90.6 1.1 2.3E-05 38.3 6.9 58 74-131 193-250 (269)
320 PF15015 NYD-SP12_N: Spermatog 89.7 4.2 9.1E-05 37.1 10.1 91 103-194 183-288 (569)
321 KOG3617 WD40 and TPR repeat-co 89.5 1.4 3E-05 43.4 7.3 80 98-194 914-993 (1416)
322 KOG1258 mRNA processing protei 89.5 7.4 0.00016 36.7 11.9 109 92-204 362-477 (577)
323 KOG1914 mRNA cleavage and poly 89.1 8.1 0.00018 36.3 11.7 82 86-172 10-91 (656)
324 COG5191 Uncharacterized conser 88.7 0.87 1.9E-05 39.8 5.0 83 88-173 99-182 (435)
325 KOG3783 Uncharacterized conser 88.5 5.1 0.00011 37.4 10.1 62 98-159 451-517 (546)
326 KOG0530 Protein farnesyltransf 88.4 15 0.00033 31.5 12.2 121 77-201 58-180 (318)
327 PF04910 Tcf25: Transcriptiona 88.2 12 0.00025 33.5 12.1 104 97-202 104-227 (360)
328 COG5191 Uncharacterized conser 87.8 0.79 1.7E-05 40.1 4.2 85 118-205 95-179 (435)
329 TIGR03504 FimV_Cterm FimV C-te 87.8 1.1 2.3E-05 27.4 3.6 31 99-130 2-32 (44)
330 PF12862 Apc5: Anaphase-promot 87.7 4.5 9.8E-05 28.5 7.6 37 95-131 40-76 (94)
331 PF10516 SHNi-TPR: SHNi-TPR; 87.3 1.7 3.6E-05 25.7 4.2 27 135-161 3-29 (38)
332 KOG2047 mRNA splicing factor [ 87.0 18 0.00039 34.9 12.7 127 72-200 397-543 (835)
333 PF14863 Alkyl_sulf_dimr: Alky 86.6 2.5 5.4E-05 32.6 6.0 51 95-148 69-119 (141)
334 KOG0529 Protein geranylgeranyl 86.5 25 0.00054 31.9 13.2 127 75-204 42-185 (421)
335 COG2909 MalT ATP-dependent tra 86.1 10 0.00023 37.5 11.1 101 100-204 419-533 (894)
336 KOG3807 Predicted membrane pro 85.9 19 0.00042 32.1 11.6 99 78-179 200-323 (556)
337 PF10255 Paf67: RNA polymerase 85.4 3.9 8.5E-05 37.1 7.5 60 100-163 126-194 (404)
338 PF10602 RPN7: 26S proteasome 85.2 7.1 0.00015 31.1 8.3 64 135-200 38-105 (177)
339 COG3629 DnrI DNA-binding trans 85.1 5.6 0.00012 34.3 8.0 62 135-197 155-216 (280)
340 COG4455 ImpE Protein of avirul 84.6 8.7 0.00019 32.2 8.5 60 72-131 11-70 (273)
341 cd02682 MIT_AAA_Arch MIT: doma 84.1 2.9 6.3E-05 28.6 4.7 27 97-123 7-33 (75)
342 PF10345 Cohesin_load: Cohesin 84.1 26 0.00057 33.4 12.9 103 95-198 58-169 (608)
343 KOG0529 Protein geranylgeranyl 83.9 27 0.00059 31.7 11.9 127 78-207 91-234 (421)
344 smart00386 HAT HAT (Half-A-TPR 83.8 3.1 6.8E-05 22.2 4.2 28 110-140 1-28 (33)
345 COG3947 Response regulator con 83.6 4.8 0.0001 35.0 6.9 54 103-159 286-339 (361)
346 PF04212 MIT: MIT (microtubule 83.2 3.7 8E-05 27.2 5.0 27 97-123 6-32 (69)
347 KOG1464 COP9 signalosome, subu 83.0 4.5 9.8E-05 34.9 6.4 56 108-163 39-95 (440)
348 PF12854 PPR_1: PPR repeat 81.9 3.1 6.8E-05 23.5 3.7 24 135-158 9-32 (34)
349 KOG0546 HSP90 co-chaperone CPR 81.5 1.8 3.9E-05 38.3 3.6 68 99-169 278-345 (372)
350 PF12854 PPR_1: PPR repeat 81.3 4.1 8.8E-05 23.0 4.0 27 95-121 6-32 (34)
351 PF10255 Paf67: RNA polymerase 80.7 3.9 8.5E-05 37.1 5.6 61 135-197 124-193 (404)
352 KOG1914 mRNA cleavage and poly 79.8 11 0.00024 35.5 8.2 73 120-197 10-82 (656)
353 smart00386 HAT HAT (Half-A-TPR 79.7 6.7 0.00015 20.8 4.6 28 147-174 1-28 (33)
354 PF04781 DUF627: Protein of un 79.6 8.5 0.00018 28.4 6.1 68 139-206 2-82 (111)
355 COG4649 Uncharacterized protei 79.4 32 0.00069 27.9 10.8 90 100-192 62-156 (221)
356 COG4455 ImpE Protein of avirul 79.3 27 0.00058 29.3 9.5 61 104-167 9-69 (273)
357 KOG1258 mRNA processing protei 78.1 51 0.0011 31.3 12.0 107 94-204 295-402 (577)
358 KOG4814 Uncharacterized conser 78.1 9.8 0.00021 36.5 7.4 71 135-206 356-432 (872)
359 PF07219 HemY_N: HemY protein 77.3 13 0.00029 26.9 6.7 52 94-148 57-108 (108)
360 KOG2041 WD40 repeat protein [G 76.9 13 0.00028 36.3 7.9 106 96-220 796-901 (1189)
361 PF11846 DUF3366: Domain of un 76.4 8.4 0.00018 30.8 5.9 49 112-164 127-175 (193)
362 PF10345 Cohesin_load: Cohesin 75.6 46 0.00099 31.8 11.6 101 95-198 403-524 (608)
363 cd02681 MIT_calpain7_1 MIT: do 75.5 7.9 0.00017 26.5 4.7 26 99-124 9-34 (76)
364 KOG3617 WD40 and TPR repeat-co 75.0 6.8 0.00015 38.8 5.6 56 96-159 938-993 (1416)
365 KOG0546 HSP90 co-chaperone CPR 73.5 2.9 6.2E-05 37.1 2.6 44 88-131 301-344 (372)
366 KOG2581 26S proteasome regulat 73.3 45 0.00097 30.5 9.9 119 93-214 166-293 (493)
367 KOG4151 Myosin assembly protei 73.2 11 0.00023 36.7 6.5 107 99-206 56-165 (748)
368 cd02683 MIT_1 MIT: domain cont 73.1 9.1 0.0002 26.2 4.5 25 99-123 9-33 (77)
369 COG3107 LppC Putative lipoprot 73.0 86 0.0019 29.7 13.3 124 72-202 38-167 (604)
370 PF04053 Coatomer_WDAD: Coatom 73.0 42 0.00091 30.9 10.2 57 92-159 343-399 (443)
371 PF11817 Foie-gras_1: Foie gra 72.2 57 0.0012 27.2 10.4 77 113-190 155-240 (247)
372 cd02679 MIT_spastin MIT: domai 72.2 6.5 0.00014 27.2 3.6 28 135-162 10-37 (79)
373 PF15015 NYD-SP12_N: Spermatog 71.3 6.2 0.00013 36.0 4.2 57 100-159 232-288 (569)
374 KOG3783 Uncharacterized conser 70.1 31 0.00068 32.3 8.6 69 135-203 451-526 (546)
375 PF11846 DUF3366: Domain of un 69.7 22 0.00047 28.3 6.9 40 88-128 137-176 (193)
376 COG4941 Predicted RNA polymera 69.7 36 0.00078 30.3 8.4 74 96-172 329-404 (415)
377 smart00745 MIT Microtubule Int 69.4 13 0.00029 24.9 4.8 25 99-123 11-35 (77)
378 PF13041 PPR_2: PPR repeat fam 69.2 14 0.00031 22.3 4.5 24 136-159 6-29 (50)
379 COG3014 Uncharacterized protei 69.2 64 0.0014 28.9 9.8 60 100-159 62-151 (449)
380 PF01535 PPR: PPR repeat; Int 68.5 9.3 0.0002 20.1 3.2 21 139-159 6-26 (31)
381 PF11207 DUF2989: Protein of u 68.4 60 0.0013 26.6 9.0 31 167-199 141-171 (203)
382 KOG3616 Selective LIM binding 68.3 15 0.00033 36.0 6.3 122 92-217 991-1125(1636)
383 cd02678 MIT_VPS4 MIT: domain c 68.3 14 0.00031 24.8 4.7 25 99-123 9-33 (75)
384 PF08238 Sel1: Sel1 repeat; I 68.0 15 0.00032 20.6 4.2 13 112-124 24-36 (39)
385 PF11817 Foie-gras_1: Foie gra 67.0 30 0.00065 28.9 7.4 63 97-159 179-244 (247)
386 PRK15180 Vi polysaccharide bio 66.4 65 0.0014 30.3 9.7 89 106-198 299-387 (831)
387 cd02656 MIT MIT: domain contai 66.3 17 0.00037 24.3 4.8 25 99-123 9-33 (75)
388 cd02680 MIT_calpain7_2 MIT: do 66.2 15 0.00032 25.1 4.3 16 146-161 19-34 (75)
389 PF07079 DUF1347: Protein of u 65.5 95 0.0021 28.9 10.5 95 99-194 9-105 (549)
390 cd02682 MIT_AAA_Arch MIT: doma 65.5 14 0.0003 25.3 4.1 26 136-161 9-34 (75)
391 KOG1839 Uncharacterized protei 65.1 23 0.00049 36.6 7.1 108 90-201 967-1090(1236)
392 PF14863 Alkyl_sulf_dimr: Alky 63.8 39 0.00085 25.9 6.9 47 135-181 72-118 (141)
393 TIGR00756 PPR pentatricopeptid 63.2 20 0.00043 19.0 4.0 20 104-123 8-27 (35)
394 smart00671 SEL1 Sel1-like repe 62.9 17 0.00036 19.9 3.6 13 111-123 20-32 (36)
395 PF04212 MIT: MIT (microtubule 62.3 23 0.0005 23.2 4.8 27 135-161 7-33 (69)
396 PF04053 Coatomer_WDAD: Coatom 62.3 23 0.0005 32.6 6.2 25 135-159 349-373 (443)
397 KOG0890 Protein kinase of the 60.8 1.7E+02 0.0037 32.7 12.6 111 92-207 1666-1794(2382)
398 COG3947 Response regulator con 60.1 54 0.0012 28.7 7.6 56 138-194 284-339 (361)
399 KOG1839 Uncharacterized protei 59.8 37 0.00079 35.2 7.5 71 92-162 1011-1086(1236)
400 KOG0686 COP9 signalosome, subu 59.1 1.1E+02 0.0024 28.0 9.6 63 97-159 151-213 (466)
401 PF13041 PPR_2: PPR repeat fam 58.8 23 0.0005 21.3 4.0 27 170-197 6-32 (50)
402 KOG0276 Vesicle coat complex C 58.0 33 0.0007 32.9 6.3 24 136-159 669-692 (794)
403 cd02684 MIT_2 MIT: domain cont 57.6 28 0.0006 23.6 4.5 20 103-122 13-32 (75)
404 PF07219 HemY_N: HemY protein 57.1 71 0.0015 23.0 7.3 36 135-171 61-96 (108)
405 TIGR02996 rpt_mate_G_obs repea 56.9 40 0.00087 20.3 4.5 33 117-152 3-35 (42)
406 PRK15490 Vi polysaccharide bio 56.8 70 0.0015 30.6 8.4 73 82-159 28-100 (578)
407 PF09797 NatB_MDM20: N-acetylt 56.1 54 0.0012 29.0 7.4 48 109-159 196-243 (365)
408 KOG0985 Vesicle coat protein c 55.1 1.3E+02 0.0027 31.2 10.0 60 94-161 1102-1161(1666)
409 PF09205 DUF1955: Domain of un 55.0 81 0.0018 24.4 7.0 49 108-159 98-146 (161)
410 PF02064 MAS20: MAS20 protein 54.6 26 0.00056 26.3 4.3 32 100-131 67-98 (121)
411 KOG1538 Uncharacterized conser 54.4 78 0.0017 30.9 8.2 25 135-159 806-830 (1081)
412 PHA02537 M terminase endonucle 54.3 1.3E+02 0.0028 25.2 11.2 104 106-209 93-219 (230)
413 PF10952 DUF2753: Protein of u 53.6 83 0.0018 23.9 6.8 70 98-167 3-88 (140)
414 KOG2581 26S proteasome regulat 52.5 1.4E+02 0.003 27.5 9.1 33 96-128 247-279 (493)
415 PF13812 PPR_3: Pentatricopept 52.4 35 0.00077 18.1 4.4 22 138-159 6-27 (34)
416 cd02683 MIT_1 MIT: domain cont 52.0 28 0.00061 23.7 3.9 26 136-161 9-34 (77)
417 KOG0985 Vesicle coat protein c 51.7 1.7E+02 0.0037 30.3 10.3 57 135-197 1106-1162(1666)
418 KOG4014 Uncharacterized conser 51.4 1.4E+02 0.003 24.6 8.3 96 96-199 34-143 (248)
419 KOG4563 Cell cycle-regulated h 51.3 34 0.00073 30.7 5.1 57 96-155 41-105 (400)
420 TIGR02498 type_III_ssaH type I 51.0 80 0.0017 21.8 6.9 59 98-159 8-66 (79)
421 cd02677 MIT_SNX15 MIT: domain 50.8 37 0.00079 23.1 4.3 13 147-159 20-32 (75)
422 PF12583 TPPII_N: Tripeptidyl 50.8 75 0.0016 24.3 6.2 42 99-143 79-120 (139)
423 COG5107 RNA14 Pre-mRNA 3'-end 50.5 86 0.0019 29.3 7.6 73 84-159 30-102 (660)
424 KOG0276 Vesicle coat complex C 50.3 1.8E+02 0.0038 28.2 9.8 48 72-124 647-694 (794)
425 PF14852 Fis1_TPR_N: Fis1 N-te 50.2 48 0.001 19.0 4.5 25 135-159 3-30 (35)
426 COG2909 MalT ATP-dependent tra 49.7 2.8E+02 0.006 28.0 11.4 67 98-164 460-528 (894)
427 smart00745 MIT Microtubule Int 48.7 47 0.001 22.1 4.6 26 136-161 11-36 (77)
428 cd02681 MIT_calpain7_1 MIT: do 48.5 38 0.00083 23.1 4.0 26 136-161 9-34 (76)
429 PF09670 Cas_Cas02710: CRISPR- 47.5 2.1E+02 0.0046 25.7 12.6 64 98-161 133-197 (379)
430 TIGR03362 VI_chp_7 type VI sec 47.3 1.4E+02 0.0031 25.9 8.4 64 136-203 216-285 (301)
431 PF04190 DUF410: Protein of un 45.9 1.8E+02 0.004 24.5 11.0 90 99-192 13-114 (260)
432 PF00244 14-3-3: 14-3-3 protei 45.5 71 0.0015 26.6 6.1 27 169-195 170-196 (236)
433 PRK15490 Vi polysaccharide bio 45.2 1.2E+02 0.0026 29.0 8.0 82 105-192 17-98 (578)
434 cd00280 TRFH Telomeric Repeat 45.1 73 0.0016 25.9 5.7 38 102-143 117-154 (200)
435 PF09477 Type_III_YscG: Bacter 44.8 1.3E+02 0.0027 22.3 10.3 51 99-152 9-59 (116)
436 TIGR03362 VI_chp_7 type VI sec 43.7 2.2E+02 0.0048 24.8 14.0 48 108-159 111-158 (301)
437 PF13226 DUF4034: Domain of un 43.1 2.2E+02 0.0047 24.6 9.4 22 183-204 114-135 (277)
438 PRK11619 lytic murein transgly 42.5 1.5E+02 0.0032 28.8 8.5 51 106-159 322-372 (644)
439 KOG0128 RNA-binding protein SA 42.3 3.7E+02 0.008 27.0 13.2 115 79-197 96-219 (881)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 40.6 1.4E+02 0.0031 22.2 6.5 43 114-159 81-125 (126)
441 COG0422 ThiC Thiamine biosynth 40.5 9.1 0.0002 34.3 -0.0 16 1-16 322-337 (432)
442 PF02184 HAT: HAT (Half-A-TPR) 40.0 71 0.0015 18.0 3.7 21 110-130 1-21 (32)
443 cd02656 MIT MIT: domain contai 39.8 63 0.0014 21.4 4.1 26 136-161 9-34 (75)
444 KOG2561 Adaptor protein NUB1, 39.4 2.3E+02 0.0049 26.4 8.5 98 98-196 165-295 (568)
445 KOG2908 26S proteasome regulat 39.0 2.9E+02 0.0062 24.8 10.5 89 105-196 84-182 (380)
446 KOG2709 Uncharacterized conser 38.9 35 0.00076 31.2 3.3 30 134-163 23-52 (560)
447 PF02255 PTS_IIA: PTS system, 38.3 74 0.0016 22.7 4.4 30 93-122 11-40 (96)
448 PF05053 Menin: Menin; InterP 38.1 1.1E+02 0.0025 29.0 6.6 71 95-165 276-350 (618)
449 cd02678 MIT_VPS4 MIT: domain c 37.3 72 0.0016 21.3 4.1 27 136-162 9-35 (75)
450 KOG2997 F-box protein FBX9 [Ge 37.3 47 0.001 29.3 3.8 38 94-131 17-54 (366)
451 PF04190 DUF410: Protein of un 37.3 2.5E+02 0.0055 23.6 10.0 85 92-197 86-170 (260)
452 KOG1497 COP9 signalosome, subu 36.7 3.1E+02 0.0067 24.5 10.2 97 96-194 103-210 (399)
453 KOG3677 RNA polymerase I-assoc 36.5 85 0.0018 28.9 5.3 96 104-203 243-342 (525)
454 PF09670 Cas_Cas02710: CRISPR- 36.2 2.5E+02 0.0054 25.2 8.5 61 136-197 134-198 (379)
455 PRK11619 lytic murein transgly 36.0 4.2E+02 0.009 25.8 10.6 54 142-196 321-374 (644)
456 cd00215 PTS_IIA_lac PTS_IIA, P 36.0 83 0.0018 22.5 4.4 30 93-122 12-41 (97)
457 TIGR00823 EIIA-LAC phosphotran 35.9 83 0.0018 22.6 4.4 31 92-122 13-43 (99)
458 KOG3807 Predicted membrane pro 35.6 3.3E+02 0.0072 24.5 10.3 96 98-199 186-306 (556)
459 COG5187 RPN7 26S proteasome re 35.6 2.7E+02 0.0058 24.6 8.0 71 91-161 68-143 (412)
460 PF13226 DUF4034: Domain of un 35.3 1.9E+02 0.0041 24.9 7.2 63 84-149 65-149 (277)
461 PF06287 DUF1039: Protein of u 34.5 1.3E+02 0.0028 20.0 4.7 47 110-159 7-53 (66)
462 PRK09591 celC cellobiose phosp 33.6 94 0.002 22.6 4.4 32 92-123 16-47 (104)
463 PF04348 LppC: LppC putative l 32.5 15 0.00032 34.7 0.0 61 96-158 24-86 (536)
464 PF00244 14-3-3: 14-3-3 protei 31.9 1.8E+02 0.004 24.2 6.5 59 99-159 4-63 (236)
465 KOG0890 Protein kinase of the 31.3 3.1E+02 0.0066 30.9 9.1 50 107-159 1460-1509(2382)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 31.3 1.1E+02 0.0024 22.8 4.6 34 90-123 93-126 (126)
467 PF10938 YfdX: YfdX protein; 31.2 2.5E+02 0.0054 21.8 11.6 97 99-196 5-145 (155)
468 COG1447 CelC Phosphotransferas 31.2 87 0.0019 22.9 3.8 31 92-122 15-45 (105)
469 KOG1538 Uncharacterized conser 31.2 66 0.0014 31.3 4.0 90 90-194 741-830 (1081)
470 COG4259 Uncharacterized protei 31.1 2.1E+02 0.0046 20.9 7.6 32 98-129 74-105 (121)
471 smart00101 14_3_3 14-3-3 homol 30.8 1.6E+02 0.0035 24.8 6.0 45 150-194 145-197 (244)
472 TIGR00985 3a0801s04tom mitocho 30.8 93 0.002 24.2 4.2 32 100-131 94-126 (148)
473 COG2015 Alkyl sulfatase and re 29.6 1.3E+02 0.0029 28.2 5.5 49 99-150 455-503 (655)
474 PRK10454 PTS system N,N'-diace 29.6 1.2E+02 0.0025 22.6 4.3 32 92-123 27-58 (115)
475 COG5107 RNA14 Pre-mRNA 3'-end 29.3 4.9E+02 0.011 24.5 10.1 25 143-167 442-466 (660)
476 TIGR00190 thiC thiamine biosyn 28.9 19 0.00041 32.6 0.1 16 1-16 321-336 (423)
477 KOG4459 Membrane-associated pr 28.8 71 0.0015 29.5 3.6 87 99-195 136-222 (471)
478 PF14346 DUF4398: Domain of un 28.8 2.1E+02 0.0046 20.1 6.2 29 96-124 45-73 (103)
479 KOG2422 Uncharacterized conser 28.6 5.4E+02 0.012 24.8 10.5 98 98-199 344-450 (665)
480 PRK12798 chemotaxis protein; R 28.5 4.5E+02 0.0097 24.2 8.6 77 117-199 98-179 (421)
481 PRK09284 thiamine biosynthesis 27.2 20 0.00044 33.7 -0.1 16 1-16 474-489 (607)
482 KOG4279 Serine/threonine prote 26.3 1.1E+02 0.0024 30.4 4.6 86 108-200 299-398 (1226)
483 COG5091 SGT1 Suppressor of G2 26.3 1.6E+02 0.0034 25.6 5.0 99 105-207 4-118 (368)
484 PRK13352 thiamine biosynthesis 26.2 21 0.00046 32.4 -0.1 16 1-16 324-339 (431)
485 PF01239 PPTA: Protein prenylt 26.0 1.2E+02 0.0025 16.2 4.2 25 116-143 3-27 (31)
486 PLN02444 HMP-P synthase 26.0 22 0.00048 33.6 -0.1 16 1-16 479-494 (642)
487 PHA02537 M terminase endonucle 25.4 1.1E+02 0.0024 25.6 3.9 22 108-129 190-211 (230)
488 PF03745 DUF309: Domain of unk 25.3 2E+02 0.0043 18.6 6.6 56 100-155 3-61 (62)
489 PF01964 ThiC: ThiC family; I 25.1 20 0.00044 32.4 -0.4 16 1-16 320-335 (420)
490 KOG2709 Uncharacterized conser 23.9 97 0.0021 28.5 3.5 34 92-125 18-51 (560)
491 KOG3616 Selective LIM binding 23.9 4.7E+02 0.01 26.4 8.2 24 136-159 768-791 (1636)
492 KOG2997 F-box protein FBX9 [Ge 23.6 1.3E+02 0.0029 26.6 4.2 25 135-159 21-45 (366)
493 KOG4056 Translocase of outer m 23.5 2E+02 0.0043 22.2 4.6 32 100-131 85-116 (143)
494 PF12753 Nro1: Nuclear pore co 23.5 1.4E+02 0.003 27.2 4.4 45 149-195 334-389 (404)
495 PRK15356 type III secretion sy 23.2 2.5E+02 0.0055 19.1 5.2 47 110-159 8-54 (75)
496 TIGR02710 CRISPR-associated pr 23.1 4.5E+02 0.0097 23.8 7.6 66 92-157 124-195 (380)
497 PF09205 DUF1955: Domain of un 23.0 3.7E+02 0.0079 20.9 8.5 61 136-197 88-149 (161)
498 PF12753 Nro1: Nuclear pore co 23.0 1.6E+02 0.0035 26.8 4.8 34 111-149 333-366 (404)
499 KOG1920 IkappaB kinase complex 23.0 5.2E+02 0.011 27.1 8.6 20 140-159 959-978 (1265)
500 PF07980 SusD: SusD family; I 21.7 2E+02 0.0043 23.3 5.0 31 96-126 133-163 (266)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.76 E-value=2.4e-17 Score=128.07 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=112.5
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
...+.++++.+|++ ++++|.++...|++++|+..|++++.++|++.. +++++|.++..+|++++|+..|++++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---AHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45668899999986 678999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
..|.++++++++|.++.. .|++++|+..|+++++++|++.......+
T Consensus 87 l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred cCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999988 56999999999999999999998776555
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=2.8e-16 Score=128.24 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=118.3
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+....|....+.+++.||++..+|..++.+|...|+.+.|.+.|++|++++|++.+ +++|.|..++.+|++++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNNYG~FLC~qg~~~e 121 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhhhhHHHHhCCChHH
Confidence 445677778888899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|...|+++ ...|.++ +.+.++|.|-..+ |+++.|++.|+++|+++|+++....
T Consensus 122 A~q~F~~A-l~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 122 AMQQFERA-LADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred HHHHHHHH-HhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHH
Confidence 99999999 4467664 8899999998885 5889999999999999999987544
No 3
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.70 E-value=7.6e-16 Score=125.80 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHcCC--HHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL-YEVGD--REEAIAE 155 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~-~~~g~--~~~A~~~ 155 (228)
++.+..+...++.+|++++.|+.+|.++...|++++|+..|+++++++|++.. ++.++|.++ ...|+ +++|++.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---LYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCCCCcHHHHHH
Confidence 56677788889999999999999999999999999999999999999999999 999999986 67788 5999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+++++...|.++++++.+|..++. .|++++|+.+|+++++++|.+.+.
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFM-QADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999988 569999999999999999876653
No 4
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=4.1e-15 Score=128.58 Aligned_cols=122 Identities=17% Similarity=0.051 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHh---cChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 78 LTQAEKDASAAVS---SRVS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 78 ~~~a~~~~~~al~---~~p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
.+.++..+...+. ++|+ .+..|+++|.++...|++++|+..|+++++++|+++. +++++|.++...|++++|+
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---AYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCHHHHH
Confidence 4455666667774 4444 4888999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
..|++++...|.++.++.++|.+++. .|++++|++.|+++++++|+++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999988 56899999999999999999873
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=3.2e-16 Score=142.56 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=106.4
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.....-+.|..++..+++..|+-+.++.|+|.+|.++|++++|+.+|+.+++++|.+++ ++.|+|.+|-++|+.++|
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd---a~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD---ALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH---HHHhcchHHHHhhhHHHH
Confidence 34455667777777777888888888888888888888888888888888888888888 888888888888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+.+|++++...|...+++.+|+.++.. .|+..+|++.|+.+|+++|++++++
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKD-SGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcHHHHHHHHHHHccCCCCchhh
Confidence 888888877777777888888887766 5688999999999999999988863
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=9.5e-16 Score=139.53 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+..+-|+..+.++++.+|+..+++.|+|+++...|+..+|+++|.+++.+.|++++ +.+|+|.++.++|.+++|..
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had---am~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD---AMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhccchHHHH
Confidence 344445555555555555555555555555555555555555555555555555555 55555555555555555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
.|++++...|....++.+|+.++.+ +|++++|+.+|+++|+++|.+++++
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHHHHHHhcCchHHHHH
Confidence 5555544444444555555554444 3345555555555555555555443
No 7
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.64 E-value=7.7e-15 Score=111.60 Aligned_cols=116 Identities=15% Similarity=0.056 Sum_probs=109.5
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
+..+++.+|++..+.+.+|..+...|++++|+..|++++.++|++.. +++++|.++..+|++++|+..+++++...|
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---YWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999999 999999999999999999999999988888
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+++.++.+|.++.. .|++++|+..|+++++++|++...
T Consensus 83 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 83 DDPRPYFHAAECLLA-LGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchH
Confidence 899999999998888 568999999999999999988774
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=1.5e-14 Score=141.99 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=126.3
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.|+..+.++++.+|+ +.+++++|.++.+.|++++|+..|+++++++|+++. +++++|.++...|++++|+..
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---YQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHH
Confidence 7788888899999999996 999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHHHHHh
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHF 224 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
|++++...|.++++++++|.++.. .|++++|+..|+++++++|+.....+..+ |....-..|+++
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g---~~~~~~~~~~~a 730 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYARLVIDDIDNQALITPLTP---EQNQQRFNFRRL 730 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCchhhhhhh---HHHHHHHHHHHH
Confidence 999999999999999999999988 56899999999999999999988776555 433333334444
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=7.5e-14 Score=131.75 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+..+.|+..+..+++++|++...++++|.++...|++++|+..|+++++++|+++. +++++|.+++..|++++|+.
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---IYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555 55555555555555555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+|++++...|.+...+..+|.+++. .|++++|+..|+++++.+|++..
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChH
Confidence 5555555555555555555555544 23555555555555555555544
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=7.6e-14 Score=131.74 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=118.3
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.+++.+|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~---~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF---SHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH---HHHHHHHHHHHCCCHHHH
Confidence 35566778888888999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..|++++...|.+++++..+|.++.. .|++++|++.|+++++++|+...
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLD-QNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCcccc
Confidence 999999999899999999999999988 56899999999999999998654
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=7.7e-14 Score=108.35 Aligned_cols=105 Identities=9% Similarity=-0.024 Sum_probs=97.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+.+...+..++..+|.+..+++++|.++...|++++|+..|+++++++|+++. +++++|.++..+|++++
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~---a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE---PVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHcCCHHH
Confidence 445667788999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
|+..|++++...|.+++.+..++.+...
T Consensus 111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 111 AREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999998888876655
No 12
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=3.4e-13 Score=116.64 Aligned_cols=121 Identities=23% Similarity=0.133 Sum_probs=104.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+..+++++|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.+++..|++++|
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHH
Confidence 44566777888888999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
++.|++++...|.++.. .+...+....+++++|++.|++++...
T Consensus 152 ~~~~~~al~~~P~~~~~--~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 152 QDDLLAFYQDDPNDPYR--ALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHhCCCCHHH--HHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999998888888732 222223334568999999998877654
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=8.6e-14 Score=129.94 Aligned_cols=125 Identities=12% Similarity=-0.075 Sum_probs=111.0
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+.|...+.++++++|+++.++..+|.++...|++++|+..|+++++++|+++. +++++|.++...|++++|+..++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---IKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence 467778888999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD-PHYTDLSY 206 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~-P~~~~~~~ 206 (228)
++++..|.++..+..++.+++. .|++++|+..++++++.+ |+++..+.
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYY-HTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 9999888888777667766777 457899999999999886 66666433
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=7.7e-14 Score=130.28 Aligned_cols=124 Identities=13% Similarity=-0.045 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
.+.|...+.+++++||+++.++.++|.++... +++++|+..++++++++|+++. ++..+|.++...|+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---ALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHccC
Confidence 35667778888999999999999999887633 4589999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 149 REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+++|+..|++++...|+++++++.+|.++.. .|++++|+..|+++++++|++....
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999999999999999888 5689999999999999999987653
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=1.8e-12 Score=104.86 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=110.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.+...+..+++.+|++..+++.+|.++...|++++|++.|+++++.+|++.. +++++|.++...|++++
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---VLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcccHHH
Confidence 345567788888888899999999999999999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISL--KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~--~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|++.+++++... +..+..+..+|.++.. .|++++|+..|+++++.+|++...++
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 999999996532 2334677788888877 45889999999999999998776543
No 16
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.52 E-value=1.2e-12 Score=108.83 Aligned_cols=130 Identities=18% Similarity=0.098 Sum_probs=110.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc--
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDA---LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-- 146 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a---~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-- 146 (228)
....+..+.++..+..++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++.+.++++.+|.+++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 3456778888989999999988875 68899999999999999999999999999999988666799999999987
Q ss_pred ------CCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 147 ------GDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 147 ------g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
|++++|++.|++++...|.++... ..++.+++. .|++++|+..|+++++..|+.+
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCc
Confidence 899999999999988888876332 245665666 5699999999999999988764
No 17
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=4.7e-13 Score=104.32 Aligned_cols=107 Identities=12% Similarity=-0.021 Sum_probs=101.0
Q ss_pred HhcC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 89 VSSR-VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 89 l~~~-p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
..++ +++-+..|.+|..++..|++++|+..|+-+..++|.+.. .|+++|.++..+|++++|+..|.+++...++||
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3677 888999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
.+++++|.+++. .|+.++|++.|+.+++.--
T Consensus 104 ~~~~~ag~c~L~-lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 104 QAPWAAAECYLA-CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhc
Confidence 999999999999 4588999999999999863
No 18
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=116.09 Aligned_cols=105 Identities=23% Similarity=0.211 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
.++-+-+-|+-+++.++|.+|+..|.+||+++|.++- -|.|++-+|.++|.|+.|++.++.+|..+|.+..++..||
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3556778899999999999999999999999999998 6999999999999999999999999888888889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
.+++. +|++++|++.|+++|+++|++..
T Consensus 157 ~A~~~-~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 157 LAYLA-LGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHc-cCcHHHHHHHHHhhhccCCCcHH
Confidence 99999 56999999999999999999985
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.50 E-value=1.1e-12 Score=124.82 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=98.2
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNK----ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~----Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
..+..++++..+..+++.+|+++.+++++|.++...|++++ |+..|+++++++|++.. ++.++|.++...|++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRTGQN 300 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCCH
Confidence 45566677777777777888888888888888888888875 78888888888888877 788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
++|+..+++++...|.++.++..++.++.. .|++++|++.|+++++.+|++..
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccchH
Confidence 888888888877777777777778877776 45778888888888888887654
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.2e-13 Score=121.29 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=112.5
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+....-..++..+..+||+|+.+|+.+|.++.-+++|++|+..|+++++++|++.- ++..++.++|+++++++++.
T Consensus 373 ~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~---~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY---AYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 344444555667788999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
.|+++..+.|..|+.+...+.++-.+ ++|+.|++.|..++++.|.
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999885 5999999999999999998
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.49 E-value=1.8e-12 Score=127.50 Aligned_cols=150 Identities=15% Similarity=-0.028 Sum_probs=126.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+.+..+.++..+.++++.+|++...+..++..+.+.|++++|+..|+++++++|+ .. +++++|.++.++|++++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---AYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---HHHHHHHHHHHCCCHHHH
Confidence 45566677888888899999999888888888888889999999999999999997 77 899999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc----CCCChhHHHHHHHhhcc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT----KHWPPSLVSSLRHFITL 227 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 227 (228)
+..|++++...|.++.++.++|.++.. .|++++|++.|+++++++|++...++..++ ..-.+.....+++++++
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 468999999999999999999987664331 11123445566666654
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=2.3e-12 Score=122.57 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.++..+.++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++. ++.++|.++.+.|++++|+..|+++
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~---a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY---VRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3788889999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
+...|.++.....++.++.. .|++++|++.|+++++++|++....|.
T Consensus 345 l~~~P~~~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQ-AGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHhCccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 87777777666667887766 568999999999999999998765553
No 23
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=2.1e-12 Score=122.78 Aligned_cols=124 Identities=13% Similarity=-0.036 Sum_probs=79.5
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+++...++++++.+|++..++.+++.++.+++++++|+..+++++..+|++.. +++++|.++.++|++++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---EILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHhcchHH
Confidence 344555666666666666666666666666666666666666666666666666666666 66666666666666666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|+..|++++...|.+++++..+|.++... |+.++|...|+++++..-
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhC
Confidence 66666666555555566666666666553 356666666666666543
No 24
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.46 E-value=1.5e-12 Score=115.41 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
+...|..++..|+|++|+..|+++++++|++.. +++++|.+|..+|++++|+..+++++...|.++.+++.+|.+++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 556678888888888888888888888888888 78888888888888888888888888877778888888888777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 179 VDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
.+ |++++|+..|+++++++|++....
T Consensus 82 ~l-g~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 82 KL-EEYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred Hh-CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 74 578888888888888888877653
No 25
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=3.3e-12 Score=121.52 Aligned_cols=145 Identities=12% Similarity=-0.079 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED 158 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 158 (228)
.++....+...+..|+++++++++|.+..+.|++++|+..++++++++|++.. ++.+++.++.+++++++|+..+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---a~~~~a~~L~~~~~~eeA~~~~~~ 145 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---AFILMLRGVKRQQGIEAGRAEIEL 145 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHhccHHHHHHHHHH
Confidence 33444445556778889999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh--cC--CCChhHHHHHHHhhcc
Q 027087 159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD--TK--HWPPSLVSSLRHFITL 227 (228)
Q Consensus 159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 227 (228)
++...|.++++++.+|.++... |++++|++.|++++..+|++..++.-.+ ++ --.+.....|+++++.
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999885 5999999999999999998887644211 11 1233456667666653
No 26
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.43 E-value=6.7e-12 Score=92.50 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAA 172 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~ 172 (228)
++.++.+|..+...|++++|+..|+++++.+|++.....+++.+|.+++..|++++|+..|++++...|.+ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46789999999999999999999999999999874322389999999999999999999999998777765 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
+|.++... +++++|+..|+++++..|++..+...
T Consensus 82 ~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQEL-GDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHh-CChHHHHHHHHHHHHHCcCChhHHHH
Confidence 99998884 58999999999999999998765443
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1e-11 Score=100.35 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=115.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHcCCH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY--KDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~--P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
....+..+.+...+..+++.+|++...++++|.++...|++++|+..|++++... +.... .+.++|.++...|++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR---SLENAGLCALKAGDF 151 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH---HHHHHHHHHHHcCCH
Confidence 4455677888888899999999999999999999999999999999999999854 34455 789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++|+..+++++...+.++..+..++.+++. .|++++|...+++++++.|+.....+
T Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred HHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999988888888999999998888 56899999999999999887766544
No 28
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=3.6e-12 Score=104.32 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=119.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+.+....+.+...++.+++++|++.++++|.|.-++.+|+|++|...|++|+. +|.+......+-|+|+|-.++|+++.
T Consensus 79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchh
Confidence 44556677777888899999999999999999999999999999999999987 79887777799999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|...|++++..+|++|.....++...+. .|+|-.|+..+++.....+-..+..|
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYK-AGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHh-cccchHHHHHHHHHHhcccccHHHHH
Confidence 9999999999999999999999998988 56899999999999888776666555
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.4e-12 Score=119.70 Aligned_cols=125 Identities=13% Similarity=-0.013 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.|.|...++.++..||.+..+||.+|.+|.++++++.|+-.|++|++++|.+.. ....+|.++.++|+.|+|+..|+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---i~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---ILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---HHhhhhHHHHHhhhhhHHHHHHH
Confidence 456666677777888888888888888888888888888888888888888877 77788888888888888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+|+..+|.+|-..+..+.+++.. +++++|...++++-++.|+....++
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~-~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSL-GRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhh-cchHHHHHHHHHHHHhCcchHHHHH
Confidence 88777778887778888888774 4778888888888888888776655
No 30
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6e-12 Score=114.03 Aligned_cols=131 Identities=17% Similarity=0.067 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-------------------------
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS------------------------- 132 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~------------------------- 132 (228)
...++..+..++..||+++++|..||.+....++-..||.+++++++++|++.++
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5666666677777777777777777777777777777777777777777775440
Q ss_pred -------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 133 -------------------------------------------------EYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 133 -------------------------------------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
...+..||.+|+-.|+|++|+.+|+.+|...
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~ 460 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK 460 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence 0134568889999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|.|--.|+-||..+.. +.+.++|+..|++||++.|.|..+++.-+
T Consensus 461 Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 461 PNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 8888899999999988 77899999999999999999999888544
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.39 E-value=9.5e-12 Score=125.15 Aligned_cols=133 Identities=15% Similarity=0.075 Sum_probs=117.3
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-----------HHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-----------EYARVGRA 140 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-----------~~a~~~la 140 (228)
....+..+.|+..+.++++.+|+++.+++.+|.++.++|++++|+..|+++++++|++... .+....+|
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3455667889999999999999999999999999999999999999999999999987631 01234668
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|++.|+++++++|++..+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 899999999999999999999999999999999999888 5699999999999999999988753
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=2.1e-12 Score=87.11 Aligned_cols=68 Identities=28% Similarity=0.320 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-DREEAIAEMEDVSISLK 164 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 164 (228)
+++..|+++|.++...|+|++|+..|+++++++|+++. +++++|.++..+| ++++|++.+++++...|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36788999999999999999999999999999999999 9999999999999 79999999999965543
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.38 E-value=1.6e-11 Score=123.55 Aligned_cols=129 Identities=20% Similarity=0.103 Sum_probs=114.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH------------
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL------------ 141 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~------------ 141 (228)
+.+..+.|+..+.++++.+|++..+++.+|.++..+|++++|++.|+++++++|++.. ++.+++.
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~---a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN---AVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCHHHHHH
Confidence 4556677888889999999999999999999999999999999999999999999987 5555444
Q ss_pred ------------------------------HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 027087 142 ------------------------------ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQF 191 (228)
Q Consensus 142 ------------------------------~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~ 191 (228)
++...|++++|++.|++++...|.++.+++.++.++.. .|++++|+..|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45568999999999999999999999999999998888 56899999999
Q ss_pred HHHHhcCCCCCchhh
Q 027087 192 TIATLLDPHYTDLSY 206 (228)
Q Consensus 192 ~~al~l~P~~~~~~~ 206 (228)
+++++++|++.+.++
T Consensus 519 ~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 519 RRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHHcCCCCHHHHH
Confidence 999999999987654
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.38 E-value=1.1e-11 Score=85.11 Aligned_cols=99 Identities=28% Similarity=0.300 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
+++++|.++...|++++|+..++++++..|++.. +++.+|.++...|++++|+..+++++...+.++..+..++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5789999999999999999999999999999988 8999999999999999999999999888888888899999988
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 027087 178 YVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 178 ~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
... |++++|...++++++.+|+
T Consensus 79 ~~~-~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 79 YKL-GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHH-HhHHHHHHHHHHHHccCCC
Confidence 885 5899999999999998874
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.5e-12 Score=119.35 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
.+...+..||+.++.|..+|++|..+++++.||++|++|+++||++.- ++-.+|.-+....++|.|..+|+.+|..+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY---ayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY---AYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch---hhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 345566777888888888888888888888888888888888887664 66666666666666666666666665555
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+.+-.+|+++|.++.. +++++.|+-+|++|+++||.+..
T Consensus 486 ~rhYnAwYGlG~vy~K-qek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLK-QEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred chhhHHHHhhhhheec-cchhhHHHHHHHhhhcCCccchh
Confidence 5555666666666655 33556666666666666665554
No 36
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.36 E-value=2.4e-11 Score=96.83 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=96.7
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
..++..+..++++|..+...|++++|+..|++++++.|+......+++++|.++...|++++|+..|++++...|.++..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 34567788899999999999999999999999999988754222379999999999999999999999998888888899
Q ss_pred HHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCC
Q 027087 170 HAALAAALYVDKHA--------------LLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 170 ~~~la~~l~~~~~~--------------~~~A~~~~~~al~l~P~~~ 202 (228)
+..+|.++...+ + +++|++.+++++.++|++.
T Consensus 109 ~~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 109 LNNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999998887754 3 6789999999999999873
No 37
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.3e-11 Score=103.27 Aligned_cols=119 Identities=18% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD---REEAIAEMED 158 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~---~~~A~~~~~~ 158 (228)
+.-.+.-++.||+|++.|..+|.+|..+|+++.|...|.+|+++.|++++ .+..+|.+++.+.+ ..++...+++
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---ILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 34456677999999999999999999999999999999999999999999 89999999887643 5699999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+++.++.|+.+.+.|+..+++ .|+|.+|...|+..++..|.+...
T Consensus 219 al~~D~~~iral~lLA~~afe-~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFE-QGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCCCch
Confidence 999999999999999999999 469999999999999999877663
No 38
>PLN02789 farnesyltranstransferase
Probab=99.35 E-value=5.4e-11 Score=103.95 Aligned_cols=131 Identities=8% Similarity=-0.098 Sum_probs=119.3
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH--HH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR--EE 151 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~--~~ 151 (228)
....+.++.....+++++|++..+|+.+|.++..+| ++++++..++++++.+|++.. +|++++.++...|+. ++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---aW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---IWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---HhHHHHHHHHHcCchhhHH
Confidence 345678888889999999999999999999999999 689999999999999999999 999999999999984 78
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
++..+++++...+.+-.++..++.++... |+++++++.+.++|++||++..+...++
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence 89999999999999999999999998885 5899999999999999999998766544
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=1.2e-11 Score=105.71 Aligned_cols=129 Identities=22% Similarity=0.133 Sum_probs=103.2
Q ss_pred hCCCchHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 74 TYDPLTQAEKDASAAVSSR--VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~--p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
.....+.+......+.... ++++..++.+|.++.+.|++++|+..|+++++++|++.. ++..++.++...|++++
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---ARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHCTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCChHH
Confidence 3444555555555544333 678889999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+...++......+.+|..+..+|.++... |++++|..+|+++++.+|+++....
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccccccccccccc
Confidence 88888887666788999999999999885 5899999999999999999888654
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=4.2e-11 Score=93.44 Aligned_cols=93 Identities=12% Similarity=-0.052 Sum_probs=86.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..++|...++-+...||.++..|+++|.++..+|+|++||+.|.+++.++|+++. +++|.|.|++..|+.++
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~---~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ---APWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHcCCHHH
Confidence 345677899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCH
Q 027087 152 AIAEMEDVSISLKGYP 167 (228)
Q Consensus 152 A~~~~~~al~~~~~~p 167 (228)
|++.|+.++.....+|
T Consensus 122 A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 122 AIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHhccCh
Confidence 9999999977665555
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=3.4e-11 Score=115.35 Aligned_cols=129 Identities=20% Similarity=0.137 Sum_probs=113.3
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+...++.+|++..+++.+|.++...|++++|+..|+++++.+|+++. ++.++|.++...|+ ++|
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---VLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCc-HHH
Confidence 34455667777778888889999999999999999999999999999999999999988 89999999999999 889
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..+++++...|.++..+..+|.+++. .|++++|+..|+++++++|.+...++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 999999988888888888899998887 56899999999999999998777654
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.32 E-value=3.7e-11 Score=106.52 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=96.7
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..+++++.++|++.. +++++|.+++.+|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---AYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHhCCHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~ 180 (228)
+..|++++...|.++.++..++.+...+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998888877765443
No 43
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=104.83 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=96.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+-....+|+..|..+|+++|+|+..|.|++.+|.++|.|+.|++..+.+|++||.+.. +|..+|.+|+.+|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk---ay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK---AYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH---HHHHHHHHHHccCcHHHH
Confidence 34466889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~ 180 (228)
++.|+++|.+.|.++....+|..+-..+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999998898887777777665443
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.31 E-value=7.8e-11 Score=114.05 Aligned_cols=130 Identities=12% Similarity=-0.013 Sum_probs=115.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+...+..+.++..+..+...+|..+.++.++|.++...|++++|+..|+++++++|+++. ++.+++.++...|++++
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---YQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHH
Confidence 344566777888888888888999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|+..+++++...|.+++ +..++.++.. .|++++|+..|+++++++|++...+.
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999988899989 8889988877 46889999999999999999887644
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=4.9e-11 Score=97.44 Aligned_cols=97 Identities=14% Similarity=-0.003 Sum_probs=89.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--HH
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA--LL 185 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~--~~ 185 (228)
..++.++++..++++++.+|++.+ +|+++|.++...|++++|+..|++++...|.+++.+..+|.+++...|+ ++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 378889999999999999999999 9999999999999999999999999999999999999999987554555 59
Q ss_pred HHHHHHHHHHhcCCCCCchhhh
Q 027087 186 LAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 186 ~A~~~~~~al~l~P~~~~~~~~ 207 (228)
+|++.++++++++|++..+++.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 128 QTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHH
Confidence 9999999999999999987663
No 46
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.28 E-value=1.6e-10 Score=91.63 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
.+..++++|.++..+|++++|+..|++++.+.|+.....++++++|.++...|++++|+..|++++...+.+++.+.+++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 36778999999999999999999999999998775433348999999999999999999999999888888888888888
Q ss_pred HHHHHh------cCCHH-------HHHHHHHHHHhcCCCCCc
Q 027087 175 AALYVD------KHALL-------LAENQFTIATLLDPHYTD 203 (228)
Q Consensus 175 ~~l~~~------~~~~~-------~A~~~~~~al~l~P~~~~ 203 (228)
.++... .|+++ +|...|++++..+|....
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 888732 24545 777777788888886543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.1e-11 Score=104.61 Aligned_cols=126 Identities=13% Similarity=-0.053 Sum_probs=95.3
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
..+.|+.++++++++||+...+|..+|.-|..+++...|+..|++|++++|.+.. ||+.+|.+|.-++-..=|+-.|
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---AWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---AWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---HHhhhhHHHHHhcchHHHHHHH
Confidence 3566677777777888888888888888888888888888888888888887777 7888888887777777788888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 157 EDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 157 ~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++++..-|.|+..|..||.++-. .++.++|++.|++++....-...+++
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccchHHHH
Confidence 88877777777777778887766 34678888888888777666555444
No 48
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.28 E-value=1.5e-11 Score=81.99 Aligned_cols=65 Identities=25% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+..|++++...|.+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPE---AWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788888899999999999999998888888 888999999999999999999998877777765
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=1e-10 Score=97.15 Aligned_cols=114 Identities=25% Similarity=0.240 Sum_probs=100.2
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE-- 168 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~-- 168 (228)
.++..+..++++|..+...|++++|+..|++++..+|+++....+++.+|.+++..|++++|+..|++++...|.++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 456778899999999999999999999999999999998743338899999999999999999999999888887774
Q ss_pred -HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCCCCch
Q 027087 169 -VHAALAAALYVDK-------HALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 169 -~~~~la~~l~~~~-------~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+++.+|.+++... |++++|++.|+++++.+|+....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 6888899887741 57899999999999999998654
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.6e-10 Score=102.78 Aligned_cols=122 Identities=16% Similarity=0.004 Sum_probs=111.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
...+....+|+..++++++++|.|..+||.+|.+|.-++-+.=|+-.|++|+++.|++.. .|..+|.||.++++.++
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---lw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---LWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---HHHHHHHHHHHhccHHH
Confidence 456667788888899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
|+++|.+++.....+..++..+|.++-+++ ++++|...|++.++.
T Consensus 451 AiKCykrai~~~dte~~~l~~LakLye~l~-d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 451 AIKCYKRAILLGDTEGSALVRLAKLYEELK-DLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 999999997766666789999999887754 889999999999983
No 51
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=2e-10 Score=100.35 Aligned_cols=126 Identities=11% Similarity=-0.035 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF--NKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~--~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
.++++.++..+++.+|++..+|+++|.++.+.|+. ++++..++++++++|++.. +|.+++.++...|+++++++.
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~---AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH---AWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhhhHHHHHHH
Confidence 46788888888999999999999999999999874 7889999999999999999 999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHhcCCCCCchhh
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVD---KH---ALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~---~~---~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++++..++.|..+++.++.++... ++ ..++.+++..++|.++|++..+..
T Consensus 165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~ 221 (320)
T PLN02789 165 CHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWR 221 (320)
T ss_pred HHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHH
Confidence 9999999999999999999887664 11 125678888899999999988743
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.8e-11 Score=110.98 Aligned_cols=114 Identities=17% Similarity=0.045 Sum_probs=105.6
Q ss_pred HHHHHHhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 84 DASAAVSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 84 ~~~~al~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.++.+...+| .+++++..||.+|...|+|+.|+++|+.||..+|++.. .|+.+|-++....+.++|+..|++++.
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---LWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---HHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3455566777 78999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
+-|.+..++++||..+..+ |.|+||..+|-.||.+.++.
T Consensus 493 LqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred cCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999995 59999999999999998873
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=2.2e-10 Score=109.83 Aligned_cols=130 Identities=19% Similarity=0.085 Sum_probs=97.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+.++++.+|++..+++.+|.++...|++++|+..++++++.+|++.. +++.+|.++...|++++|
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A 212 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELA 212 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHhcCCHHHH
Confidence 34455667777777777777777777888888888888888888888888777777777 777778888888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..|++++...|.++..+..++.++.. .|++++|...++++++.+|++....+
T Consensus 213 ~~~~~~a~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (899)
T TIGR02917 213 LAAYRKAIALRPNNPAVLLALATILIE-AGEFEEAEKHADALLKKAPNSPLAHY 265 (899)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 888888777777777777777777766 34677777777777777777665544
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.24 E-value=3.2e-10 Score=100.55 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=104.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
+.+..+.+...+..+++.+|++..+++.+|.++.+.|++++|++.|+++++.+|++.. .++..++.+|...|++++|+
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS--EVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHcCCHHHHH
Confidence 4566777888888888888988889999999999999999999999999998887642 16788889999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
..+++++...|..+ ....++.++.. .|++++|+..|+++++.+|++....
T Consensus 270 ~~l~~~~~~~p~~~-~~~~la~~~~~-~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 270 EFLRRALEEYPGAD-LLLALAQLLEE-QEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHhCCCch-HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 99999866666543 44677877777 4588999999999999999887654
No 55
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.23 E-value=3.8e-10 Score=95.99 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087 96 ALELLEKGREL-QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA 171 (228)
Q Consensus 96 a~a~~~lG~~~-~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~ 171 (228)
....|+.+..+ .+.|+|++|+..|++.++..|++.....+++.+|.+|+..|++++|+..|++++...|.++ ++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888876 5689999999999999999999864444999999999999999999999999988778764 8888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+|.++.. .|++++|+..|+++++..|+...+..
T Consensus 222 klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 89998887 56899999999999999998776543
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=2.5e-10 Score=86.59 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=86.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+.+.+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++.+|++.. .++++|.++...|++++
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR---PYFHAAECLLALGEPES 103 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHcCCHHH
Confidence 344566788888889999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHH
Q 027087 152 AIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~ 169 (228)
|+..|++++...|.++..
T Consensus 104 A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 104 ALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHhccccchH
Confidence 999999998887777653
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.22 E-value=3.9e-10 Score=109.23 Aligned_cols=132 Identities=9% Similarity=-0.077 Sum_probs=114.9
Q ss_pred hCCCchHHHHHHHHHHhcCh-------------h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRV-------------S--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG 138 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p-------------~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~ 138 (228)
+.+..++|...+..+.+.+| + ...+++.+|.++...|++++|++.+++++...|++.. ++++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---l~~~ 398 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---LRID 398 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence 34556666666666666665 2 3467889999999999999999999999999999999 9999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
+|.++...|++++|++.+++++...|.++..++.++.++.. .+++++|+..++++++.+|+++.+....+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999997777 56899999999999999999998755443
No 58
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.5e-10 Score=102.85 Aligned_cols=111 Identities=23% Similarity=0.181 Sum_probs=101.3
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
-.+|+-+..-...|+.+++.|||..|+..|.++|..+|+++. .+.|+|.||..+|++..|+++.+..+.+.|.+..+
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 445666666778899999999999999999999999999999 99999999999999999999999998888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+..-|.+++.+. +|++|.+.|+++++.||+..+.
T Consensus 429 y~RKg~al~~mk-~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 429 YLRKGAALRAMK-EYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHH
Confidence 988999999865 8999999999999999988774
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=2.5e-10 Score=98.49 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=120.0
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
....+|+..+-.+++.||++..++|.+|.+|..+|+-..|+..+.+++++.|++.. |+..+|.++.++|++++|+..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~---ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA---ARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH---HHHHhchhhhhcccHHHHHHH
Confidence 44667788888999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhcCCCH---HHHHHHHHH------------HHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh----hcCCCChh
Q 027087 156 MEDVSISLKGYP---EVHAALAAA------------LYVDKHALLLAENQFTIATLLDPHYTDLSYVK----DTKHWPPS 216 (228)
Q Consensus 156 ~~~al~~~~~~p---~~~~~la~~------------l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~----~~~~~~~~ 216 (228)
|+.++...|.+- ++...++.+ .+. +|+...+++...+.|++.|.+...+..+ .-+.-+..
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHH
Confidence 999966655332 332222211 222 4799999999999999999988865421 11234567
Q ss_pred HHHHHHHhhccC
Q 027087 217 LVSSLRHFITLS 228 (228)
Q Consensus 217 ~~~~~~~~~~~~ 228 (228)
.|.|++.+..||
T Consensus 208 AI~Dlk~askLs 219 (504)
T KOG0624|consen 208 AIHDLKQASKLS 219 (504)
T ss_pred HHHHHHHHHhcc
Confidence 788888777664
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=5.2e-10 Score=93.13 Aligned_cols=111 Identities=18% Similarity=0.078 Sum_probs=94.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
..+|.+...+...|....+.|+|.+|+..++++..++|++.. +|+.+|.+|.+.|++++|...|.+++...+.+|.+
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~ 170 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI 170 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh
Confidence 446667777777888899999999999999999999999998 89999999999999999999999998888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..++|..++- .|+++.|+..+.++....+.+...
T Consensus 171 ~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 171 ANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred hhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHH
Confidence 9999987777 568899999999888877766554
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.20 E-value=9.2e-11 Score=100.20 Aligned_cols=122 Identities=20% Similarity=0.033 Sum_probs=93.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+.|+..+.++++.+|++..+...++.++...|+++++.+.++...+..|+++. .+..+|.++..+|++++
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~---~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD---LWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC---HCHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH---HHHHHHHHhcccccccc
Confidence 456777899999999999999999999999999999999999999999998888899998 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
|+..|++++...|.||..+..++.++... |+.++|.+.++++++.
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQA-GRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 99999999999999999999999999885 5889999999988753
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.19 E-value=8.9e-10 Score=97.66 Aligned_cols=120 Identities=18% Similarity=0.017 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 78 LTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+.+...+...++.+|.+ ...+.++|.++...|++++|+..|+++++.+|++.. +++.+|.++...|++++|
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR---ASILLGDLALAQGDYAAA 233 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH---HHHHHHHHHHHCCCHHHH
Confidence 344444444444444332 123445555555666666666666666666666555 556666666666666666
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 153 IAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 153 ~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
++.|++++...+.+ +..+..++.++.. .|++++|+..++++++.+|+.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc
Confidence 66666664333332 2334445555544 335566666666666666554
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.9e-10 Score=104.20 Aligned_cols=129 Identities=24% Similarity=0.179 Sum_probs=113.1
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCCH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
..+...-|..++..++.+.|.|+..+..+|.+.+..+.|.+|+..|+.++.. .+....|+=.+.|+|.++.+++++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 4466777888889999999999999999999999999999999999999833 233222333689999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
++|+..|+++|...|.+++.+..+|.++..+ |+++.|+++|.++|.++|++..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~ll-gnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLL-GNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHh-cChHHHHHHHHHHHhcCCccHH
Confidence 9999999999999999999999999988885 5899999999999999999854
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=1.3e-10 Score=78.24 Aligned_cols=65 Identities=26% Similarity=0.154 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
.|+++|.+++..|++++|+..|++++...|.++.+++++|.++..+++++++|++.|+++++++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 89999999999999999999999999999999999999999999854379999999999999998
No 65
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.17 E-value=5.1e-09 Score=88.17 Aligned_cols=130 Identities=12% Similarity=-0.000 Sum_probs=104.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALE---LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD- 148 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a---~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~- 148 (228)
...+..+.|+..+..++...|....+ .+++|.++++.|++++|+..|++.++++|+++.+.|+++.+|.+++..++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 34466778888888888888887655 48999999999999999999999999999999999999999998765541
Q ss_pred -----------------HHHHHHHHHHHHHhcCCCH---HHHHH--------------HHHHHHHhcCCHHHHHHHHHHH
Q 027087 149 -----------------REEAIAEMEDVSISLKGYP---EVHAA--------------LAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 149 -----------------~~~A~~~~~~al~~~~~~p---~~~~~--------------la~~l~~~~~~~~~A~~~~~~a 194 (228)
..+|+..|++.+...|+.+ ++... .|..++. .|.|..|+.-++.+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v 201 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQM 201 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHH
Confidence 3578899999988888764 33221 2333444 57899999999999
Q ss_pred HhcCCCCCc
Q 027087 195 TLLDPHYTD 203 (228)
Q Consensus 195 l~l~P~~~~ 203 (228)
++-.|+...
T Consensus 202 ~~~Yp~t~~ 210 (243)
T PRK10866 202 LRDYPDTQA 210 (243)
T ss_pred HHHCCCCch
Confidence 999998765
No 66
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.17 E-value=7.8e-10 Score=92.09 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=102.8
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+....|+..++++.+++|+|+++|..+|.+|.+.|++++|...|.+++++.|+.+. +..|+|..++-.||++.|.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~---~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS---IANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch---hhhhHHHHHHHcCCHHHHH
Confidence 3455677777888899999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
..+.++...-+.++.+..+++.+... .|++++|+..-.+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~-~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGL-QGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhh-cCChHHHHhhccc
Confidence 99999955555678889999998877 4688999885543
No 67
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.17 E-value=1.4e-09 Score=84.30 Aligned_cols=116 Identities=20% Similarity=0.173 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
...+...+...+..+|+. ..+.+.+|.++...|++++|+..|++++...|+......+.+.+|.++...|++++|+.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444566677777776 67789999999999999999999999999887764333488999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
.++.+ ...+..+.++..+|.++.. .|++++|+..|+++|
T Consensus 107 ~L~~~-~~~~~~~~~~~~~Gdi~~~-~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 107 TLQQI-PDEAFKALAAELLGDIYLA-QGDYDEARAAYQKAL 145 (145)
T ss_pred HHHhc-cCcchHHHHHHHHHHHHHH-CCCHHHHHHHHHHhC
Confidence 99875 2222335777888999988 568999999999875
No 68
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.13 E-value=2.9e-10 Score=79.86 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=66.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA 187 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A 187 (228)
.+|+|+.|+..|+++++.+|++.... .++++|.+++++|+|++|+..+++ ....+.+++.++.+|.+++.+ |++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~-~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSA-YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHH-HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHH-HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHH
Confidence 36899999999999999999642211 578899999999999999999988 455777778888889989885 589999
Q ss_pred HHHHHHH
Q 027087 188 ENQFTIA 194 (228)
Q Consensus 188 ~~~~~~a 194 (228)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9988875
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.6e-10 Score=99.44 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
...+...++.+|.++|.+...|..+|.+|....+.++-...|++|..+||++++ .|+.+|.+++-+++|++|++.|+
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d---vYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD---VYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---hhHhHHHHHHHHHHHHHHHHHHH
Confidence 444555667788999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+++.+.|.+.-++..++.++|.++ ++++++..|+.+++.-|+-++.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~-k~~~~m~~Fee~kkkFP~~~Ev 464 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQH-KIAESMKTFEEAKKKFPNCPEV 464 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCchH
Confidence 997777777788889999999954 8999999999999999998875
No 70
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.12 E-value=2e-09 Score=99.75 Aligned_cols=126 Identities=13% Similarity=-0.006 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAI--------GDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~--------g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
.+...+.+++++||+++.++-.++.++... ++..++.+..++++.+ +|.++. ++..+|..+...|++
T Consensus 360 ~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~---~~~ala~~~~~~g~~ 436 (517)
T PRK10153 360 KASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR---IYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH---HHHHHHHHHHhcCCH
Confidence 444555677899999999999988877553 2355667777777775 677777 889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT 210 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~ 210 (228)
++|...+++++...+ +..++..+|.++.. .|++++|++.|++|++++|.++..+|.+.+
T Consensus 437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~ 495 (517)
T PRK10153 437 DEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAYSTAFNLRPGENTLYWIENL 495 (517)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchHHHHHhc
Confidence 999999999977776 57889999998877 569999999999999999999988887664
No 71
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=2.6e-10 Score=75.97 Aligned_cols=65 Identities=32% Similarity=0.308 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
+.+|..+++.|++++|++.|++++...|.++++++.+|.+++. .|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999988888889999999999998 5699999999999999999863
No 72
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.10 E-value=5.6e-10 Score=99.95 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=66.4
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
.+|+++.+++|+|.+|..+|+|++|+..|+++++++|++....++|+|+|.+|..+|++++|+.+|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999862235999999999999999999999999554
No 73
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.7e-09 Score=88.68 Aligned_cols=131 Identities=19% Similarity=0.132 Sum_probs=118.9
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
......+.|+..+...++.||.|...+-..-.+...+|+.-+||+.+..-++.-+++.+ +|..++.+|...|+|++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---AW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---AWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhHhHHHHH
Confidence 34466888999999999999999999988888888999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchhh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKH--ALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~--~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.-+|++++-..|.+|-.+..++.++|.+|| +++-|+++|.++++++|++....+
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 999999999999999888889999988874 678999999999999997776544
No 74
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=5.5e-09 Score=93.55 Aligned_cols=127 Identities=15% Similarity=0.018 Sum_probs=108.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
......+.+....+..+...|+|+-.+-..|.++...++.++|++.+++++.++|+... .++++|.+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---LQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHhcCChHHH
Confidence 34566778888888899999999999999999999999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..+++.+..+|.||+.|..|+.++-.+| +..++...+.+...+.-++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELG-NRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhC-chHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999998877754 445555555555554444333
No 75
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.05 E-value=7.7e-09 Score=77.77 Aligned_cols=99 Identities=20% Similarity=0.106 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG---YPEVHAAL 173 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~p~~~~~l 173 (228)
.++|+++.++-..|+.++|+..|+++++...+...-..+++++|.++..+|++++|+..+++++...|. +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999987665433348999999999999999999999999877777 44666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 027087 174 AAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+.+++.. |+.++|++.+-.++.
T Consensus 82 Al~L~~~-gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNL-GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHH
Confidence 8888885 588999999988775
No 76
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.05 E-value=7e-09 Score=100.65 Aligned_cols=126 Identities=8% Similarity=-0.105 Sum_probs=75.2
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
+.+..+.|+..+.++++.+|+++...+.+..++...|++++|+..+++++ +|++.. .+....+|.++..+|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 33444577777777777777775333366666666666666666666666 443333 012333355666666666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+.|++++...|.+++++..++..+.. .++.++|++.+++++..+|+...
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHH
Confidence 66666666666666666665554444 34566666666666666666433
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=7.5e-09 Score=96.77 Aligned_cols=129 Identities=17% Similarity=0.029 Sum_probs=116.0
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+++.-....+-.++|..+..|+..|..+..+|++++|.+.|..|+.+||++.. ....+|.++.+.|+-.-|.
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---SMTALAELLLELGSPRLAE 738 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhCCcchHH
Confidence 4444555555566677889999999999999999999999999999999999999999 9999999999999988777
Q ss_pred H--HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 154 A--EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 154 ~--~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
. .+..+++.+|.++++|+++|.++.. .|+.++|.+.|..++++++..+...|
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHHHHHHHHHHhhccCCCcccc
Confidence 7 9999999999999999999999988 56889999999999999999887665
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.04 E-value=8e-09 Score=75.88 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=84.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
...+..+.++..+..+++.+|++ ..+++.+|.++...|++++|+..|++++..+|++.....+++++|.++..+|++
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 92 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK 92 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh
Confidence 44567788899999999888876 678999999999999999999999999999998632222899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 027087 150 EEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~ 170 (228)
++|+..+++++...|.++.+.
T Consensus 93 ~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 93 EKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHHCcCChhHH
Confidence 999999999988877776443
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=6.2e-09 Score=91.25 Aligned_cols=106 Identities=18% Similarity=-0.003 Sum_probs=91.6
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE- 168 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~- 168 (228)
..+|+....+..+|.++..+|++++|+..++++++++|++.. ++..+|.++++.|++++|+..+++++...+.++.
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 456777778888999999999999999999999999999998 8999999999999999999999999766654442
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 169 ---VHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 169 ---~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
.+..++.++.. .|++++|+..|++++...|
T Consensus 185 ~~~~~~~la~~~~~-~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 185 RGHNWWHLALFYLE-RGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcccc
Confidence 34567887777 5699999999999987776
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.03 E-value=1.1e-09 Score=73.40 Aligned_cols=67 Identities=24% Similarity=0.264 Sum_probs=58.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
+...|+|++|+..|++++..+|++.. +++.+|.+|.+.|++++|...+++++...|.++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 35789999999999999999999999 99999999999999999999999998877777776665543
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=8.8e-09 Score=84.36 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~ 171 (228)
++..+|..|..+...|+|++|+..|++++...|+...+..+.+.+|.+++..|++++|+..+++.+...|.++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4678999999999999999999999999999999887777999999999999999999999999999999876 6788
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCch
Q 027087 172 ALAAALYVDK----------HALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 172 ~la~~l~~~~----------~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+|.+.+.+. +...+|+..|+..++..|+..-+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 8888876643 23468999999999999998764
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.02 E-value=2.4e-09 Score=72.71 Aligned_cols=68 Identities=22% Similarity=0.232 Sum_probs=61.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l 173 (228)
..++.+.++|++|++.+++++.++|+++. .++.+|.+++.+|++++|++.|++++...|.++++...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE---LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch---hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56889999999999999999999999999 999999999999999999999999988888887665543
No 83
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.02 E-value=6.8e-09 Score=87.30 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALA 174 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la 174 (228)
-.|+.+.-+++.|||.+|+..|..-+...|+......|+|.||.+++.+|+|++|...|..+++..|.+| ++++-+|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3899999999999999999999999999999876666999999999999999999999999988888764 9999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++..++ +.++|...|+++++..|+...+..
T Consensus 223 ~~~~~l~-~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLG-NTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999965 789999999999999998776543
No 84
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.00 E-value=1.3e-09 Score=76.41 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=70.0
Q ss_pred CCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
...+.|+..+.++++.+|. +...++.+|.++++.|+|++|+..+++ ...++.+.. .++.+|.+++++|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~---~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD---IHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH---HHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH---HHHHHHHHHHHhCCHHHHH
Confidence 3457788889999988884 677889999999999999999999999 888998888 7888899999999999999
Q ss_pred HHHHHH
Q 027087 154 AEMEDV 159 (228)
Q Consensus 154 ~~~~~a 159 (228)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.5e-09 Score=91.02 Aligned_cols=129 Identities=12% Similarity=-0.026 Sum_probs=108.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+-+..++++.++.--.+++.+.|+|.+....+++|-++..|++|+...-+....+..|||+|.+....||+.-|..+|+
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 45566667777777777778889999999999999999999999998876555545589999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
-++.-++++.+++++|+..-.. .|++++|+..+..+-+++|+..+..+.
T Consensus 420 laL~~d~~h~ealnNLavL~~r-~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAAR-SGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhh-cCchHHHHHHHHHhhhhCccccccccc
Confidence 9977777778999999986555 678999999999999999998876553
No 86
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.99 E-value=1.3e-09 Score=94.15 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
.-..|+-|+++|+|++||++|.+++..+|.++- .+.|++.+|+++++|..|..+++.++.++..+..++..++.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---YHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---chhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998 79999999999999999999999998888788888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 179 VDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
.+| ...||.+.++.+|++.|+..+..
T Consensus 177 ~Lg-~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 177 SLG-NNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHh-hHHHHHHhHHHHHhhCcccHHHH
Confidence 854 78999999999999999966643
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=3.1e-09 Score=91.89 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=100.5
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
.+|.+.+-++.+|..+...|++..|+..|..|++.+|++.. +++.+|.+|..+|+...|+..+.+++.+-|..-.++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 46788889999999999999999999999999999999999 999999999999999999999999977766667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
...|.++..+ |.+++|+..|+.+|.-+|+...
T Consensus 110 iQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 110 IQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred HHhchhhhhc-ccHHHHHHHHHHHHhcCCCcch
Confidence 9999999995 5899999999999999997654
No 88
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=1.2e-08 Score=80.17 Aligned_cols=106 Identities=11% Similarity=-0.050 Sum_probs=95.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
.+..+.-+..|..|--++.+|++++|+..|+-....+|.+.+ -++.+|.++..+|+|++|+..|..+....++||..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 566777788899999999999999999999999999999998 59999999999999999999999998888899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
.+..|.|+..++ +.++|+..|+.+++ .|.
T Consensus 108 ~f~agqC~l~l~-~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 108 VFFTGQCQLLMR-KAAKARQCFELVNE-RTE 136 (165)
T ss_pred cchHHHHHHHhC-CHHHHHHHHHHHHh-Ccc
Confidence 999999999965 78999999999998 444
No 89
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.95 E-value=3.6e-08 Score=75.79 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~ 171 (228)
.+..+|+.|....+.|+|++|++.|+.+....|...-+.-+.+.+|.+|++.|++++|+..+++.+++.|.+| -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3567899999999999999999999999999998765556899999999999999999999999999999987 4566
Q ss_pred HHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCch
Q 027087 172 ALAAALYVDK--------------HALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 172 ~la~~l~~~~--------------~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..|.+.+.+. +...+|...|+++++..|+..-+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6787777743 12688999999999999987643
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=97.64 Aligned_cols=127 Identities=11% Similarity=0.020 Sum_probs=99.4
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.|+..+.+++..+|.....+..+|.++..+|+|++|++.|+++++.+|+++. ++..++.++.+.|+.++|+
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---LISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHhhcCCHHHHH
Confidence 3455556666666666444555666666688999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVD-KHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~-~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+.++++ .+.+|+....++.++... .++..+|++.|+++++++|++.+...
T Consensus 157 ~~l~~l---~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 157 KQATEL---AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HHHHHh---cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999 666765444444443331 24556799999999999999988643
No 91
>PRK11906 transcriptional regulator; Provisional
Probab=98.95 E-value=1.9e-08 Score=90.29 Aligned_cols=123 Identities=11% Similarity=-0.071 Sum_probs=100.5
Q ss_pred chHHHHHHHHHH---hcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 78 LTQAEKDASAAV---SSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 78 ~~~a~~~~~~al---~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
...|...+.+++ ++||+.+.+|..++.++... .+-.+|.+.-++|++++|+|+. ++..+|.++..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~---a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK---ILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHh
Confidence 345555678888 88999888888887777533 3456788888999999999998 89999999888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.|+++.|+..|++++...|+++.+++..|.+... .|+.++|.++.+++++++|.-..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCchhhHH
Confidence 8899999999999988888888888888887777 568899999999999999875544
No 92
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=2.4e-08 Score=85.03 Aligned_cols=94 Identities=19% Similarity=0.106 Sum_probs=84.1
Q ss_pred CCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
+..+.++..+...++..|++ +.++|.+|.+|+..|++++|+..|+++++..|+++....+++.+|.++..+|++++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 45778888889999999998 589999999999999999999999999999999876666999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHH
Q 027087 153 IAEMEDVSISLKGYPEV 169 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~ 169 (228)
++.|++++...|....+
T Consensus 237 ~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 237 KAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHCcCCHHH
Confidence 99999997777766533
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=2.1e-08 Score=87.88 Aligned_cols=129 Identities=14% Similarity=-0.086 Sum_probs=99.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
...+..+.+...+.++++.+|++..++.. +..+...|++..+.....+++. ..|.++...+++.++|.++..+|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34466777888888889999999888775 6666555555544444444442 233334333478899999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
|+..+++++...|.++.++..++.+++. .|++++|+..+++++...|....
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcc
Confidence 9999999999999999999999999988 56999999999999999886443
No 94
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.3e-08 Score=89.65 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF------------SEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
+...-..|+.+++.|+|..|+..|++++..-..... ---.+.|++.|+.++++|.+|+...+++|...
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344567799999999999999999998766432110 00147899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+.|+.+++..|.++..+ ++|+.|+..|+++++++|++..+
T Consensus 288 ~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred CCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999884 58999999999999999998765
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.91 E-value=3.8e-08 Score=82.89 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVH 170 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~ 170 (228)
.++..+|..|..+...|+|++|++.|++++...|+.+....+.+++|.++++.|++++|+..+++.+...|.+| .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45667899999999999999999999999999999987556679999999999999999999999999999886 667
Q ss_pred HHHHHHHHHhc-----------------CCHHHHHHHHHHHHhcCCCCCc
Q 027087 171 AALAAALYVDK-----------------HALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 171 ~~la~~l~~~~-----------------~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+.+|.+.+..+ ....+|...|++.++..|+..-
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 77787643321 1135788999999999998654
No 96
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.90 E-value=8.8e-09 Score=98.33 Aligned_cols=126 Identities=23% Similarity=0.183 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+-|++.+..+++.||.|.-+-..+|.++...|++.+|++.|.++.+--.++.+ +|.|+|.||..+|+|-.|++.|+
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---v~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---VWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---eeeeHHHHHHHHHHHHHHHHHHH
Confidence 456777778888999999999999999999999999999999999998888888 99999999999999999999999
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 158 DVSISLK--GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 158 ~al~~~~--~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
.++...- +++++...||.+++.. |.+.+|.++...++.+.|.+....|.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~-~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEA-GKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9976544 3579999999999995 57999999999999999999987774
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.86 E-value=9.5e-09 Score=92.16 Aligned_cols=73 Identities=16% Similarity=0.027 Sum_probs=66.2
Q ss_pred hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC
Q 027087 125 NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV---HAALAAALYVDKHALLLAENQFTIATLL-DPH 200 (228)
Q Consensus 125 l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~---~~~la~~l~~~~~~~~~A~~~~~~al~l-~P~ 200 (228)
.+|+++. +++|+|.+|+.+|+|++|+..|++++...|+++++ ++++|.+|..+ |++++|+++|++++++ ++.
T Consensus 70 ~dP~~a~---a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALelsn~~ 145 (453)
T PLN03098 70 ADVKTAE---DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRDYNLK 145 (453)
T ss_pred CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcchh
Confidence 4899999 99999999999999999999999999999998865 99999999885 6899999999999998 444
Q ss_pred C
Q 027087 201 Y 201 (228)
Q Consensus 201 ~ 201 (228)
+
T Consensus 146 f 146 (453)
T PLN03098 146 F 146 (453)
T ss_pred H
Confidence 4
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=2.9e-08 Score=67.78 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+..+.+...+..+++.+|++...++.+|.++...|++++|+..|++++...|.+.. .+..+|.++...|++++|..
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK---AYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh---HHHHHHHHHHHHHhHHHHHH
Confidence 455677888888999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHH
Q 027087 155 EMEDVSI 161 (228)
Q Consensus 155 ~~~~al~ 161 (228)
.+++++.
T Consensus 90 ~~~~~~~ 96 (100)
T cd00189 90 AYEKALE 96 (100)
T ss_pred HHHHHHc
Confidence 9999944
No 99
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=2.7e-08 Score=81.32 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l 173 (228)
..+..+|.+|+.|-..|-++-|.-.|.+++.+.|+-+. +++-+|.-+...|+|+.|.+.|+.++..+|.+--++.++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45778999999999999999999999999999999999 899999999999999999999999988878777888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhh--hhhcCCCCh
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPHYTD-LSY--VKDTKHWPP 215 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~-~~~--~~~~~~~~~ 215 (228)
|..+|. +|++.-|.+.+.+--+-||+++- +.| +.+.+.-|.
T Consensus 140 gi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 140 GIALYY-GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred ceeeee-cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 998888 78999999999999999998885 333 344344443
No 100
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.85 E-value=7.8e-08 Score=72.79 Aligned_cols=104 Identities=22% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALA 174 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la 174 (228)
+-..|.++...|+.+.|++.|.+++.+.|..+. +|+|++.++.-+|+.++|+..+++++....... .++...|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERAS---AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchH---hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 455689999999999999999999999999999 999999999999999999999999966544322 5566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++.. .|+.+.|+..|+.+-++...+.....
T Consensus 123 ~lyRl-~g~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 123 LLYRL-LGNDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred HHHHH-hCchHHHHHhHHHHHHhCCHHHHHHH
Confidence 75555 56779999999999999888776544
No 101
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.85 E-value=1.8e-08 Score=69.37 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENY----KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~----P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
|+-+.+++++|.++..+|+|++|++.|++++++. ++++...-+++++|.++..+|++++|++.+++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999999999999763 222333447899999999999999999999999543
No 102
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.83 E-value=1.2e-07 Score=90.15 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=111.5
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.|...+..+|+++|.++.+|+.+|.+|.++||.+++...+-.|--++|++.+ -|..++....++|++++|+-+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---LWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHhcccHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|.+|+...|.+-+..+....++.. .|++..|.+.|.+++.++|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~-~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQK-TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH-hChHHHHHHHHHHHHhhCC
Confidence 999987777777777778887766 4588999999999999999
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=90.73 Aligned_cols=122 Identities=21% Similarity=0.192 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED 158 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 158 (228)
..+..+++.++.+|.-++.++.|.|++.+..|++++|.+.|++++.-+..-.+ +++|+|+.+..+|+.++|+.+|-+
T Consensus 473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e---alfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE---ALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH---HHHHhcccHHHhcCHHHHHHHHHH
Confidence 34455556677888888999999999999999999999999999998888888 999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+-..+.++.++++.++.+|-. ..+..+|++++.++.++-|+++..
T Consensus 550 lh~il~nn~evl~qianiye~-led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYEL-LEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-hhCHHHHHHHHHHhcccCCCCHHH
Confidence 877788888999999987766 457799999999999999988753
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.2e-08 Score=88.74 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=98.3
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
+......|+..+..+|..+|+|+..|.|++.+|.+.|.+..|+...+++++++|++.. +|...|.++..+.+|++|+
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k---gy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK---AYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4456777888889999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
+.|++++..+|.+.++...+..++-.+.++ ..-.+.+++
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a~~~~-~~~ee~~~r 485 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEAQRGD-ETPEETKRR 485 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhcC-CCHHHHHHh
Confidence 999999777776667777777776653322 344444444
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-08 Score=89.61 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=88.5
Q ss_pred CchHHHHHHHHHHhcChhhHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDAL------------ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALAL 143 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~------------a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~ 143 (228)
..+-++..+.++++++|++.. .+-+.|+-.++.|+|.+|.+.|..+|.++|++... ...|.|++.+.
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 345566667777778887653 34556888888888888888888888888876531 12367888888
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 144 YEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..+|+..+|+...+.++.+++.+-.++...|.++..+ +++++|.+.|+++++..-+
T Consensus 298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccc
Confidence 8888888888888888555444556777777777664 4788888888888877665
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=8.9e-08 Score=86.10 Aligned_cols=112 Identities=13% Similarity=-0.053 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
...+...+++++++||.|+.+++.+|.++...|+++.|+..|++|+.++|+++. +++..|+++.-.|+.++|++.++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~---~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS---LYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH---HHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCHHHHH-HHHH-HHHHhcCCHHHHHHHHHHH
Q 027087 158 DVSISLKGYPEVHA-ALAA-ALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 158 ~al~~~~~~p~~~~-~la~-~l~~~~~~~~~A~~~~~~a 194 (228)
+++++.|.--.+-. .+-. .|+. ...++|+..|-+-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVP--NPLKNNIKLYYKE 433 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcC--CchhhhHHHHhhc
Confidence 99555554432222 2222 2333 3568888877543
No 107
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=1.3e-07 Score=74.88 Aligned_cols=84 Identities=21% Similarity=0.189 Sum_probs=70.0
Q ss_pred hhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-----
Q 027087 73 ATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALY----- 144 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~----- 144 (228)
...+..+.+...+..++.+.++ .+.+++++|.++...|++++|+..|+++++++|++.. .+.++|.++.
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~---~~~~la~i~~~~~~~ 122 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ---ALNNMAVICHYRGEQ 122 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHhhHH
Confidence 3456678888999999877655 3568999999999999999999999999999999998 8999999999
Q ss_pred --HcCCHHHHHHHHHHH
Q 027087 145 --EVGDREEAIAEMEDV 159 (228)
Q Consensus 145 --~~g~~~~A~~~~~~a 159 (228)
.+|++++|+..++++
T Consensus 123 ~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHcccHHHHHHHHHHH
Confidence 788877555554443
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.75 E-value=4.8e-07 Score=74.04 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=100.7
Q ss_pred hhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--
Q 027087 73 ATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-- 147 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-- 147 (228)
.+.+....|+..+..++...|. -..+.+.+|.++++.|+|++|+..|++.++..|+++.+.++++.+|.+++.+.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 4456678888888888876665 46789999999999999999999999999999999998899999999987754
Q ss_pred ---------CHHHHHHHHHHHHHhcCCCH---HHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 148 ---------DREEAIAEMEDVSISLKGYP---EVHA--------------ALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 148 ---------~~~~A~~~~~~al~~~~~~p---~~~~--------------~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
...+|+..|+..+...|+++ ++.. ..|..++. .|.+..|+..|+.+++-.|+.
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTS
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCC
Confidence 34589999999988888875 2222 22344444 579999999999999999987
Q ss_pred Cch
Q 027087 202 TDL 204 (228)
Q Consensus 202 ~~~ 204 (228)
...
T Consensus 175 ~~~ 177 (203)
T PF13525_consen 175 PAA 177 (203)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 109
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.74 E-value=2.8e-07 Score=73.25 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=66.2
Q ss_pred HhhCCCchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 72 AATYDPLTQAEKDASAAVSSRVS---DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~---~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
....+..+.|...+..+++.+++ .+.+++++|.++.+.|++++|+..|+++++.+|++.. ++.++|.++...|+
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~ 121 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS---ALNNIAVIYHKRGE 121 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHcCC
Confidence 44567788899999999977665 3578999999999999999999999999999999998 89999999999888
Q ss_pred H
Q 027087 149 R 149 (228)
Q Consensus 149 ~ 149 (228)
.
T Consensus 122 ~ 122 (172)
T PRK02603 122 K 122 (172)
T ss_pred h
Confidence 4
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.73 E-value=2.4e-07 Score=88.07 Aligned_cols=107 Identities=20% Similarity=0.086 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
...++..++.++..|++++|+..+.++|+.+|.++. +|+.+|.+|.++|+.+++....-.|.-..|.+.+.|..++.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 455788889999999999999999999999999999 99999999999999999999999987788889999999998
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
...+ .|.+++|+-+|.+||+.+|.+.+..|
T Consensus 216 ls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~ 245 (895)
T KOG2076|consen 216 LSEQ-LGNINQARYCYSRAIQANPSNWELIY 245 (895)
T ss_pred HHHh-cccHHHHHHHHHHHHhcCCcchHHHH
Confidence 6666 56899999999999999999977665
No 111
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.4e-07 Score=83.16 Aligned_cols=101 Identities=12% Similarity=0.000 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
..+.|++.++.++++|.+|+...+++|+++|+|.. |+|.+|.++..+|+|+.|+..|++++...|.|-.+...+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35799999999999999999999999999999999 999999999999999999999999999999998888888877
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 177 LYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 177 l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
-.......+...+.|.+++..-+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 666555556668899999887553
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=3.9e-07 Score=81.85 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=104.2
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
..+|....++|..+..++..|++++|+..++..+...|+|+- .+-..+.++.+.|+.++|++.+++++.+.|..+-.
T Consensus 300 ~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---YLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 334778889999999999999999999999999999999997 78999999999999999999999999988888889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..++|.++.. +|++.+|+..+.+.+.-+|+++..+.
T Consensus 377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~ 412 (484)
T COG4783 377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWD 412 (484)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHH
Confidence 9999999998 67899999999999999999998643
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.71 E-value=4.2e-07 Score=83.69 Aligned_cols=127 Identities=17% Similarity=0.051 Sum_probs=105.9
Q ss_pred HhhCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG 138 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~ 138 (228)
....+...+|+..+..++ ..+|.-+.++.|++.+|...|+|++|..++++|+++. .+.++++-.+.+
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 445677888888888777 5577778899999999999999999999999999875 334555557899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 139 RALALYEVGDREEAIAEMEDVSISLKG-----Y---PEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~~~~-----~---p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
++.++..++++++|+..+++++.++.. + +....++|.+++.+ |+|++|++.|++++.+.-
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHH
Confidence 999999999999999999999887652 2 25677899988885 589999999999999863
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=7.2e-07 Score=74.43 Aligned_cols=128 Identities=18% Similarity=0.115 Sum_probs=112.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+...+..+.|...+...-..-|++..+.-..|..+...|.+++|++.|+..++-||.+.- .+-..-.+.-.+|+.-+
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---IRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---HHHHHHHHHHHcCCcHH
Confidence 445566666766666666667999999999999999999999999999999999999987 67777777778899999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
||+.+.+-+.....|+++|..++.+|+.. |+|++|.-+|++++-++|.+..
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999999999999996 4999999999999999998764
No 115
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-07 Score=83.59 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHhcChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDA----LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a----~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
...+...+..+|.+||++. ..|.|++.+..++|+..+||...+.++++||.+.. ++..+|.++..++++++|+
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik---all~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK---ALLRRANCHLALEKWEEAV 341 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445555667889999984 56899999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
++|++++.. ..+++.+..+..+-..
T Consensus 342 ~d~~~a~q~-~~s~e~r~~l~~A~~a 366 (486)
T KOG0550|consen 342 EDYEKAMQL-EKDCEIRRTLREAQLA 366 (486)
T ss_pred HHHHHHHhh-ccccchHHHHHHHHHH
Confidence 999999443 3346666666655444
No 116
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.71 E-value=9.1e-07 Score=79.83 Aligned_cols=126 Identities=14% Similarity=0.041 Sum_probs=109.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~ 150 (228)
+..-+....|.....++.+..|+....+...|.+..++|++++|...|+++.+..|++. . +....+.++...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~---~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL---VEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH---HHHHHHHHHHHCCCHH
Confidence 44557777888888888888888888888889999999999999999999999999985 4 5666799999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
+|...+++++...|+++.++..++.++.. .|++++|++.+.+.++.....
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIR-SGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999998888 458999999999999875443
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.70 E-value=4.1e-07 Score=82.12 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=96.1
Q ss_pred HHHHhcCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 86 SAAVSSRV----SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 86 ~~al~~~p----~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
...++..| ++...++.+|..+...|++++|++.++++++..|++....+ ..-........++.+++++.+++.+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 33455566 58899999999999999999999999999999999885111 13344455556889999999999999
Q ss_pred hcCCCH--HHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCch
Q 027087 162 SLKGYP--EVHAALAAALYVDKHALLLAENQFT--IATLLDPHYTDL 204 (228)
Q Consensus 162 ~~~~~p--~~~~~la~~l~~~~~~~~~A~~~~~--~al~l~P~~~~~ 204 (228)
..|.+| ..+..+|.+++. .|++++|+++|+ .+++.+|+....
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMK-HGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred hCCCChhHHHHHHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 999999 888899999988 568999999999 688899987664
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.8e-07 Score=83.16 Aligned_cols=118 Identities=20% Similarity=0.187 Sum_probs=91.4
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
.-+.++..|+.+..||..|.-|...|++.+|..+|.++..+||.+.. +|...|..+...|+-|+|+.+|..|.+..+
T Consensus 301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 301 SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 34556778888888888888888888888888888888888888888 888888888888888888888888866666
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..-.....+|.-+.. .+.++-|.+.|.+|+.+.|.++-.+.
T Consensus 378 G~hlP~LYlgmey~~-t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMR-TNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred CCcchHHHHHHHHHH-hccHHHHHHHHHHHHhcCCCcchhhh
Confidence 655555666665544 35778888888888888888776544
No 119
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.66 E-value=1.2e-06 Score=78.75 Aligned_cols=126 Identities=12% Similarity=-0.031 Sum_probs=95.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALE-LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a-~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
+.+.+..+.+...+..+.+.+|++..+ ....+.++...|++++|++.++++++.+|+++. ++..++.+|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~---al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE---VLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHhHH
Confidence 355666777777777788888887543 344588999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHhc------------------------------------------CCCHHHHHHHHHHHHHhcCCHHHHH
Q 027087 151 EAIAEMEDVSISL------------------------------------------KGYPEVHAALAAALYVDKHALLLAE 188 (228)
Q Consensus 151 ~A~~~~~~al~~~------------------------------------------~~~p~~~~~la~~l~~~~~~~~~A~ 188 (228)
+|++.+.++.... +++|+++..++..+.. .|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHH
Confidence 9996666664222 2344555566666666 45788888
Q ss_pred HHHHHHHhcCCCC
Q 027087 189 NQFTIATLLDPHY 201 (228)
Q Consensus 189 ~~~~~al~l~P~~ 201 (228)
+.++++++..|+.
T Consensus 284 ~~L~~~l~~~~~~ 296 (398)
T PRK10747 284 QIILDGLKRQYDE 296 (398)
T ss_pred HHHHHHHhcCCCH
Confidence 8888888855543
No 120
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.63 E-value=6.8e-07 Score=68.75 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=83.2
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
+.+-...+.|+..+..+....|.. ..+.+.+|.++++.|++++|+..+++-++++|+++.+.|+++.+|++++.+.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 445566777887777777665543 57889999999999999999999999999999999999999999999999987
Q ss_pred ---------------HHHHHHHHHHHHHhcCCCH
Q 027087 149 ---------------REEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 149 ---------------~~~A~~~~~~al~~~~~~p 167 (228)
..+|...|++++...|+++
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8899999999977777765
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.7e-07 Score=79.56 Aligned_cols=120 Identities=18% Similarity=0.083 Sum_probs=84.7
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
|....++..+...++.-|.+.-.+...+.++..++++++|++.|+.+++++|.+.+ +...+|.-|+-.|+.+-|+..
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---aiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---AIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---eeeeeeeccccCCChHHHHHH
Confidence 33344444444444666777667777788889999999999999999999999888 666666667777777777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|++++..--.+|+...++|.|++. ++++|-+...|+++++...
T Consensus 347 YRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHHHHHHhhcc
Confidence 777766656667777777766655 4466777777777766654
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.62 E-value=1.8e-06 Score=80.19 Aligned_cols=127 Identities=20% Similarity=0.149 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--
Q 027087 96 ALELLEKGRELQAIGD---FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--------DREEAIAEMEDVSIS-- 162 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~---~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--------~~~~A~~~~~~al~~-- 162 (228)
+-.+|.+|.-+...++ +++|+.+|++|++++|++.. ++..++.++.... +.+++....++++..
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 3345788888877655 88999999999999999998 8888888876642 234556666665332
Q ss_pred cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh----cCCCChhHHHHHHHhhcc
Q 027087 163 LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD----TKHWPPSLVSSLRHFITL 227 (228)
Q Consensus 163 ~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 227 (228)
.+.+|.++..++..... .|++++|..+|+++++++|+ ...+...+ ..--.+.-++.+.+++++
T Consensus 416 ~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 LNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55567888888887766 56999999999999999995 55555433 112334456666666655
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.62 E-value=1.9e-07 Score=63.21 Aligned_cols=69 Identities=20% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 140 ALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 140 a~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
..+|...+++++|++.+++++...|.++..+..+|.+++.+ |++++|.+.|+++++.+|+.........
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56889999999999999999999999999999999999995 5999999999999999998887765543
No 124
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.62 E-value=3.9e-07 Score=72.51 Aligned_cols=86 Identities=19% Similarity=0.027 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAIG----------DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD- 148 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g----------~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~- 148 (228)
.+...+...+..||.|++.+++.|.++..+. -+++|+.-|++|+.++|+..+ +++++|++|...+.
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---Alw~lGnA~ts~A~l 85 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---ALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHHHHHHHhh
Confidence 4555667778899999999999999997653 356789999999999999999 99999999987654
Q ss_pred ----------HHHHHHHHHHHHHhcCCCHH
Q 027087 149 ----------REEAIAEMEDVSISLKGYPE 168 (228)
Q Consensus 149 ----------~~~A~~~~~~al~~~~~~p~ 168 (228)
|++|..+|++++...|.+..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 55666777777666666553
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.5e-07 Score=76.75 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHH
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLA 187 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A 187 (228)
.+.++-+.-++.-+..||+|.+ .|..+|.+|..+|+++.|...|++++++.+++|+....++.+++.+. ....++
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~e---gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAE---GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 3466777888889999999999 99999999999999999999999999999999999999999888864 456889
Q ss_pred HHHHHHHHhcCCCCCchhhh
Q 027087 188 ENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 188 ~~~~~~al~l~P~~~~~~~~ 207 (228)
...|++++.+||.+..+.+.
T Consensus 213 ~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 213 RALLRQALALDPANIRALSL 232 (287)
T ss_pred HHHHHHHHhcCCccHHHHHH
Confidence 99999999999999998764
No 126
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=6.8e-07 Score=70.29 Aligned_cols=87 Identities=13% Similarity=-0.069 Sum_probs=81.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
.-+.+..++|..+++-+...||.+.+-++.+|.++..+|+|++|+..|..+..++++++. ..+..|.|+..+|+.++
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~---p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR---PVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---ccchHHHHHHHhCCHHH
Confidence 345677889999999888999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHH
Q 027087 152 AIAEMEDVSI 161 (228)
Q Consensus 152 A~~~~~~al~ 161 (228)
|+.+|+.++.
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999944
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=8.5e-07 Score=79.42 Aligned_cols=122 Identities=18% Similarity=0.080 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.+..++..++..|..-.+++||+|..+..+|+.++|+++|-+.-.+--++.+ .++.++.+|..+.+..+|+++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e---vl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE---VLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhhCHHHHHHH
Confidence 44677888899999999999999999999999999999999999999888889999 899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
|.++...+|++|.++.-|+.+|-+ .|+-.+|-+++-...+.-|-+
T Consensus 581 ~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhcccccCcc
Confidence 999999999999888888875444 334455555444444444443
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.59 E-value=9.2e-07 Score=79.59 Aligned_cols=107 Identities=12% Similarity=-0.021 Sum_probs=91.0
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
+..|+++.+++.++..+...|+.++|...++++++..| ++. ....++.+ ..|+.+++++.+++.+...|+||+.
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHH
Confidence 34566889999999999999999999999999999544 444 34444443 4599999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..+|.++.. .+++++|+++|+++++++|++..
T Consensus 331 ~l~lgrl~~~-~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 331 WSTLGQLLMK-HGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCHHH
Confidence 9999998888 56899999999999999999877
No 129
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.1e-07 Score=81.24 Aligned_cols=123 Identities=16% Similarity=0.049 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
..-|..+..++|+.+|.+..++...|.++...|+.++|+-.|+.|+.+.|...+ .|-.+-.+|...|++.||....+
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---IYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhhchHHHHHHHHH
Confidence 455666777888999999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHhcCCCCCch
Q 027087 158 DVSISLKGYPEVHAALA-AALYVD-KHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la-~~l~~~-~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.++...+.+...+..+| .+++.. .++ ++|.+.+++.|.++|.|..+
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~r-EKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMR-EKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhH-HHHHHHHHhhhccCCccHHH
Confidence 99888888888887776 344332 245 99999999999999999875
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=3.4e-07 Score=85.59 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
...+...+.+.++++|-....||++|.+..+.++++.|..+|.+.+.++|++.. +|+|++.+|...|+-.+|-..+.
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---aWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---AWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---hhhhhhHHHHHHhhhHHHHHHHH
Confidence 345556667778888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+++.-.-.+..++.|.-.+.... |.+++|++.|.+.+.+.-++.+
T Consensus 578 EAlKcn~~~w~iWENymlvsvdv-ge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHHhhhhccc
Confidence 88554434457777766666664 5788888888888887666554
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5.6e-07 Score=86.30 Aligned_cols=108 Identities=23% Similarity=0.205 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
++.+|++|.+++.+|+|++|-.+|.+++..+|++ .. +++.+|.++...|++++++.+|++++...|.+.+....||
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4557889999999999999999999999999998 55 8899999999999999999999999998999999888888
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 175 AALYVDK---HALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 175 ~~l~~~~---~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..+...+ ...+.|.....++++..|.+.+++.
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 8766642 2458999999999999998888644
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=1.3e-06 Score=84.88 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=87.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------------------hhHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-------------------FSEY 134 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------------------~~~~ 134 (228)
..+..+.+...+...++.+|+....++.+|.++.+.+++.++.-. +++.+-+.+. .
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~--- 117 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKL--- 117 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhH---
Confidence 456677777777777888888888888888887777777777655 6666655555 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
|++.+|.||-++|+.++|...|++++...+.|+.+.+++|..+..+ +.++|++.+.+|+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 7888888888888888888888888888888888888887766664 667777777777665
No 133
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.9e-06 Score=69.77 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--EYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
-+-.-|+-++..|+|++|...|..||++-|.-..- ...+.|+|.++.+++..+.|+..+.+++.+.|.+-.++..++.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34555999999999999999999999999986531 1247899999999999999999999998888888788887788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+|-.+ ..|++|++.|++.++++|...++
T Consensus 177 ayek~-ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKM-EKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHhh-hhHHHHHHHHHHHHHhCcchHHH
Confidence 77775 68999999999999999987754
No 134
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-06 Score=75.30 Aligned_cols=127 Identities=16% Similarity=-0.013 Sum_probs=97.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH------------------------------------HHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF------------------------------------NKAL 116 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~------------------------------------~~Ai 116 (228)
.+....++|+-.++.+..+.|.+-+.|-.+-.+|...|++ ++|.
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 3445566666666767666666665555544444333333 4677
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 117 QYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 117 ~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+.+++++.++|++.. |-..++..+...|+++++++.+++.+...+ |-..|.-||.++... +.+++|.++|..||+
T Consensus 425 kf~ek~L~~~P~Y~~---AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTP---AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQ-NEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhhccCCccHH---HHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHh-hhHHHHHHHHHHHHh
Confidence 788888889999998 999999999999999999999999944333 335788899988884 589999999999999
Q ss_pred cCCCCCch
Q 027087 197 LDPHYTDL 204 (228)
Q Consensus 197 l~P~~~~~ 204 (228)
+||++..+
T Consensus 500 ~dP~~~~s 507 (564)
T KOG1174|consen 500 QDPKSKRT 507 (564)
T ss_pred cCccchHH
Confidence 99998875
No 135
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.50 E-value=1.2e-06 Score=80.78 Aligned_cols=107 Identities=17% Similarity=0.052 Sum_probs=90.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..+|.-..+..++|..|..+|+|++|+..+++++++ .|.-.. ...++|.+|..++++++|+..|++++.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---MLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445666667778999999999999999999999999 666555 667799999999999999999999977
Q ss_pred hcC-----CCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 162 SLK-----GYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 162 ~~~-----~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
... .+| ..+.+|+.+|+. .|++++|..++++|+++.-+
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHH
Confidence 553 455 678889998988 56999999999999998654
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.50 E-value=4.1e-06 Score=63.00 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=73.9
Q ss_pred hhCCCchHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHHc
Q 027087 73 ATYDPLTQAEKDASAAVSSRV---SDALELLEKGRELQAIGDFNKALQYFTLVVENYKD---FAFSEYARVGRALALYEV 146 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p---~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---~~~~~~a~~~la~~~~~~ 146 (228)
...+..+.|+..++++++... .-..+++++|..+...|++++|+..+++++...|+ +.. ....++.++...
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~---l~~f~Al~L~~~ 88 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA---LRVFLALALYNL 88 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH---HHHHHHHHHHHC
Confidence 345678899999999997643 33678999999999999999999999999999898 666 788999999999
Q ss_pred CCHHHHHHHHHHH
Q 027087 147 GDREEAIAEMEDV 159 (228)
Q Consensus 147 g~~~~A~~~~~~a 159 (228)
|+.++|+..+-.+
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999888
No 137
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=3.5e-06 Score=71.04 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=80.8
Q ss_pred CCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
+....|...+...++.-|++ +.++|.+|.+++.+|+|++|...|..+++-.|+++.+..+++.+|.++.++|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 33567777777778777775 688999999999999999999999999999999887666999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHH
Q 027087 153 IAEMEDVSISLKGYPEV 169 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~ 169 (228)
...|++++...|..+.+
T Consensus 235 ~atl~qv~k~YP~t~aA 251 (262)
T COG1729 235 CATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHCCCCHHH
Confidence 99999996666655433
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=4.8e-06 Score=71.74 Aligned_cols=124 Identities=17% Similarity=0.030 Sum_probs=94.8
Q ss_pred CCchHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 76 DPLTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
..+..|+..+.+...+++++ +.-|..++..+....+++.|+..+.+|++.+|+... |-..+|.++...|+|+
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---Asi~lG~v~~~~g~y~ 231 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---ASIILGRVELAKGDYQ 231 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---hhhhhhHHHHhccchH
Confidence 33555555555555555443 445678888888889999999999999999999988 8889999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 151 EAIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+|++.++.++..++.+ +++...|..+|..+ |+.++.+..+.++.+.++....
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l-g~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECYAQL-GKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHccCCccH
Confidence 9999999996665555 36777777777774 5778888888888888776554
No 139
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.5e-07 Score=73.74 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
+-..|+.++.-++|+.||.+|.++|.++|..+. -+-|++.+++++++++......++++..+++....++.+|..+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcch---hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888877 48888888888888888888888887777777788888888877
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 027087 179 VDKHALLLAENQFTIATLL 197 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l 197 (228)
.. +.|++|+..+.++.++
T Consensus 90 ~s-~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QS-KGYDEAIKVLQRAYSL 107 (284)
T ss_pred hh-ccccHHHHHHHHHHHH
Confidence 74 4678888888888554
No 140
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.48 E-value=3.4e-07 Score=56.32 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL 141 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~ 141 (228)
.+++.+|.++..+|++++|++.|+++++.+|+++. ++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~---a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE---AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH---HHHHhhh
Confidence 56788888888889999999999999988898888 8887764
No 141
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.46 E-value=1.5e-07 Score=54.71 Aligned_cols=34 Identities=32% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 118 YFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 118 ~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
+|+++|+++|+++. +|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~---a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE---AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH---HHHHHHHHHHHCcCHHhhcC
Confidence 37888888898888 88899998888888888863
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=71.33 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
|...+..++.++|+-+++++-+|.-+...|+|+.|.+.|+..+++||.+.- ++.|+|+.++--||++-|...+.+--
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y---a~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH---HHhccceeeeecCchHhhHHHHHHHH
Confidence 333445567999999999999999999999999999999999999999986 99999999999999999999999997
Q ss_pred HhcCCCH
Q 027087 161 ISLKGYP 167 (228)
Q Consensus 161 ~~~~~~p 167 (228)
..+|+||
T Consensus 161 Q~D~~DP 167 (297)
T COG4785 161 QDDPNDP 167 (297)
T ss_pred hcCCCCh
Confidence 7788888
No 143
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.45 E-value=1.6e-06 Score=68.98 Aligned_cols=91 Identities=19% Similarity=0.028 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087 112 FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR----------EEAIAEMEDVSISLKGYPEVHAALAAALYVDK 181 (228)
Q Consensus 112 ~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~ 181 (228)
|+.|.+.++.....+|.+.+ ++++-|.++.++.++ ++|+.-|+++|.+.|...++++.+|.++..++
T Consensus 7 FE~ark~aea~y~~nP~Dad---nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD---NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH---HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 78899999999999999999 999999998886444 57888888898889999999999999887764
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCchh
Q 027087 182 ----------HALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 182 ----------~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
..|++|..+|++|...+|++...+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 348899999999999999987643
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=4.5e-07 Score=62.33 Aligned_cols=63 Identities=19% Similarity=0.053 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKG----YP---EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
++.++|.+|..+|++++|+..|++++..... ++ ..+.++|.++.. .|++++|+++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 7899999999999999999999999765321 12 567788998888 468999999999999863
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=3.2e-06 Score=73.06 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=92.8
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
.+..+..+.|...+...-+.+.++.......+.+....| ++.+|.-.|+...+..+..+. .++.++.++..+|+|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---LLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---HHHHHHHHHHHCT-H
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---HHHHHHHHHHHhCCH
Confidence 456677777777776666666666555555555555555 588888888887666666666 788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++|.+.+++++...+.+|+...++..+....|+..+.+.+.+.+....+|+++..
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999998777778888888888877776655467778888888888876654
No 146
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=7.2e-07 Score=85.84 Aligned_cols=128 Identities=20% Similarity=0.057 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH------------------------
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE------------------------ 133 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~------------------------ 133 (228)
...+...+.+++++|+.-+.++..+|.+|..--|...|..+|++|.++|+.+..++
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 44555666777899999999999999999988899999999999999999876622
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 134 ---------YARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 134 ---------~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..|..+|..|.+.++..+|+..|+.+++..|.|-+.|..+|.+|.. .|+|..|.+.|.++..++|.+.-.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHH
Confidence 2255688888899999999999999988888888999999999988 568999999999999999987766
Q ss_pred hh
Q 027087 205 SY 206 (228)
Q Consensus 205 ~~ 206 (228)
+|
T Consensus 633 ~f 634 (1238)
T KOG1127|consen 633 RF 634 (1238)
T ss_pred HH
Confidence 55
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=6.4e-07 Score=59.72 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=55.9
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL 141 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~ 141 (228)
.+..+.|+..+.++++.+|++..+++.+|.++.+.|++++|+..+++++..+|+++. .+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE---YQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH---HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH---HHHHHhc
Confidence 455678999999999999999999999999999999999999999999999999876 5555543
No 148
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.40 E-value=1.8e-05 Score=66.29 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE---VHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~---~~~ 171 (228)
.+..+|+-|....+.|+|++|+..|+++....|..+.+..+...++.++++.|++++|+..+++-++..|.+|+ +.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45679999999999999999999999999999998766668999999999999999999999999999998884 344
Q ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHHhcCCCCC
Q 027087 172 ALAAALYVDK-------HALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 172 ~la~~l~~~~-------~~~~~A~~~~~~al~l~P~~~ 202 (228)
..|.+.+..- ....+|...|+..+...|+..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 4565555431 234677888889999999855
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=7.2e-06 Score=70.72 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=103.2
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.+.....++++-||+...+-..+|.+....|+|++|++.++++++.||++.. -+.-.+-.+|.++|+.++.+..
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--EVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHhCCHHHHHHH
Confidence 33455566677888999999999999999999999999999999999999999854 2678889999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+.+... ....+++...++.......|. ++|.....+-|...|.....
T Consensus 272 L~~~~~-~~~g~~~~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 272 LRRAME-TNTGADAELMLADLIELQEGI-DAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred HHHHHH-ccCCccHHHHHHHHHHHhhCh-HHHHHHHHHHHhhCCcHHHH
Confidence 999943 333456777777766665554 99999999999999975543
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=3.1e-06 Score=82.41 Aligned_cols=109 Identities=10% Similarity=-0.094 Sum_probs=97.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-- 167 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-- 167 (228)
..+|.+..++..+...+...|++++|++..+.+++.+|+... .++.+|.++++.++++++.-. .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~---~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS---ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee---hHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 668999999999999999999999999999999999999999 999999999999999888776 6656666665
Q ss_pred -----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 168 -----------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 168 -----------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+++.+|.||-.+ |+.++|...|+++|++||+++.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~n~~a 152 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRDNPEI 152 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCcccHHH
Confidence 7888999988775 57899999999999999999985
No 151
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.39 E-value=6.7e-07 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
No 152
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.7e-06 Score=68.94 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSE-------YARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.++...|+-+++.|+|.+|+..|+.|+.. .|..++|. =.+.|++.|+...|+|-++++...+++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999998743 46665532 1368999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 162 SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 162 ~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..|.+..+++..+.+....- +.++|.+.|..+|+++|....+
T Consensus 259 ~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999998887765 5699999999999999987654
No 153
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.32 E-value=1.8e-06 Score=49.52 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
+++++.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999975
No 154
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=1.2e-05 Score=61.12 Aligned_cols=91 Identities=21% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
....+.++..+.+++..-|+.+.+|+|++.++.-+|+.++|++.+++++++.-+-. ..+-++..+|.+|..+|+.++|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 35577888888899999999999999999999999999999999999999975543 33457899999999999999999
Q ss_pred HHHHHHHHhcCC
Q 027087 154 AEMEDVSISLKG 165 (228)
Q Consensus 154 ~~~~~al~~~~~ 165 (228)
..|+.+.+.-..
T Consensus 136 ~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 136 ADFEAAAQLGSK 147 (175)
T ss_pred HhHHHHHHhCCH
Confidence 999999444333
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=2.4e-05 Score=70.27 Aligned_cols=110 Identities=10% Similarity=-0.106 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
...+.++..+.+..+.+|+ +...++.++...++-.+|++.+.+++..+|.+.. .+...+..+...|+++.|++.
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---LLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Confidence 4467777777877787765 5666888999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFT 192 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~ 192 (228)
.++++...|.+-+.|+.|+.+|.. .|++++|...+.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaLN 292 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQ-LGDFENALLALN 292 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHHh
Confidence 999988888888999999999998 469999998555
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=4.2e-06 Score=78.45 Aligned_cols=103 Identities=14% Similarity=-0.030 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
++.+...+|......++|+++..+++..++++|-..+ .|+++|.+..+.++++.|.++|.+.+...|.+.+++++++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 3444455566667789999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.++...+ +..+|...++++++-+-++
T Consensus 561 ~ayi~~~-~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 561 TAYIRLK-KKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHHHHh-hhHHHHHHHHHHhhcCCCC
Confidence 9999966 6699999999999998433
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=4.6e-05 Score=58.77 Aligned_cols=97 Identities=25% Similarity=0.208 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAA 172 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~ 172 (228)
+...|.........++.+.+...+++.++-+|+..-...+.+.+|.+++..|++++|+..|+.++...+.+ +.+...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34455556666689999999999999999999985444488999999999999999999999996655333 256777
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 027087 173 LAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~ 193 (228)
++.+++. .|++++|+..++.
T Consensus 91 LA~~~~~-~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 91 LARILLQ-QGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHH-cCCHHHHHHHHHh
Confidence 8998888 5699999998866
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.26 E-value=3.5e-05 Score=61.95 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=93.0
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
++||.. ........++..|... -.+.+|+.+.+.|++.+|...|++++. +.-+++. .+..++.+.+..+++.+|
T Consensus 69 ~ldP~R-~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a---~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 69 KLDPER-HLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA---MLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred hcChhH-HHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH---HHHHHHHHHHhhccHHHH
Confidence 445533 2333344455555443 368899999999999999999999875 2344555 678888899999999999
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 153 IAEMEDVSISLKG--YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 153 ~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
...++++.+-.|. .|+.+..++.++.. +|++.+|+..|+.+++-.|+..-
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCCHHH
Confidence 9999999555543 35788888888888 66889999999999999987654
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.24 E-value=1.4e-05 Score=74.23 Aligned_cols=120 Identities=9% Similarity=-0.027 Sum_probs=102.3
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
++..++|....+..++.|+.+...|..+|.++...++|++||.+|+.|+.++|+|.+ .+..++....++++++....
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q---ilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ---ILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHhhhhHHH
Confidence 456777888888888999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.-.+.+...+..-..|..++.+.... |++..|....+.-.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 88888676776667788788777764 47888887776665554
No 160
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=1.1e-05 Score=74.71 Aligned_cols=123 Identities=14% Similarity=-0.016 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
......++...++..|++.+.+-..|..+..+|+-++|....+.++..|+.+.- -|.-+|+++....+|++|+++|+
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---CwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---CWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---hHHHHHHHHhhhhhHHHHHHHHH
Confidence 445566777888999999999999999999999999999999999999999888 89999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.|+...++|-..+.-++....+++ +++-......+.+++.|.....
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHH
Confidence 998888888889988888777754 8899999999999999976543
No 161
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=64.33 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHhcChhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 78 LTQAEKDASAAVSSRVSD-----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...|...|..++..-|.- +..|.|+|.++.++++++.||....++|+++|.+.. |+..++.+|.++..|++|
T Consensus 111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k---Al~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK---ALERRAEAYEKMEKYEEA 187 (271)
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH---HHHHHHHHHHhhhhHHHH
Confidence 445555566666655543 456889999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH
Q 027087 153 IAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la 174 (228)
+..|.+++..+|..-++.....
T Consensus 188 leDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 188 LEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 9999999666665444444333
No 162
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.14 E-value=7.5e-06 Score=50.21 Aligned_cols=41 Identities=27% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
+++.+|.+|..+|++++|++.|++++...|+|++++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 78999999999999999999999999999999999888764
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.14 E-value=2e-06 Score=49.97 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQ 117 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~ 117 (228)
+.++++++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578999999999999999999999999999973
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.14 E-value=4.1e-05 Score=65.75 Aligned_cols=125 Identities=20% Similarity=0.186 Sum_probs=84.3
Q ss_pred hHHHHHHHHHH-----hcChhh-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCC
Q 027087 79 TQAEKDASAAV-----SSRVSD-ALELLEKGRELQAI-GDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGD 148 (228)
Q Consensus 79 ~~a~~~~~~al-----~~~p~~-a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~ 148 (228)
+.++..+..++ ..++.. +..+.++|.+|... |++++|++.|++|+++.-.... ....+.+.|.++.+.|+
T Consensus 91 ~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 91 DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 34444555544 223332 56678889999998 9999999999999988432221 11246789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCH----HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 149 REEAIAEMEDVSISLKGYP----EV---HAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 149 ~~~A~~~~~~al~~~~~~p----~~---~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|++|++.|+++....-.++ .+ ....+.++.. .|++..|...|++....+|.+..+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999965432221 22 2233444444 468999999999999999988774
No 165
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.13 E-value=5e-05 Score=70.85 Aligned_cols=123 Identities=11% Similarity=-0.090 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+++..++..+++..|+....|+.+|.++.++++.+.|.+.|..-++.-|+... .|..++.+-.+.|..-.|...
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip---LWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP---LWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch---HHHHHHHHHHHhcchhhHHHH
Confidence 33444444444455555555555555555555555555555555555555555544 455555555555555555555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
++++..++|.++..|...-.+-+. .|..+.|.....+||+--|+..
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELR-AGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccc
Confidence 555544444444433333333333 2344555555555555444443
No 166
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=1.7e-05 Score=74.79 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=83.7
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQ--YFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~--~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
.......+|...+..++.+||++......+|.++.+.|+..-|.. .+..++++||.+++ +|+++|.++.++|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e---aW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE---AWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHccchH
Confidence 344556777777888899999999999999999999999999988 99999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCH
Q 027087 151 EAIAEMEDVSISLKGYP 167 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p 167 (228)
+|..+|..++...+.+|
T Consensus 772 ~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 99999999988777776
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=2.8e-05 Score=69.81 Aligned_cols=83 Identities=17% Similarity=0.065 Sum_probs=76.8
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+....++.....++..+|.++..+...+..+...|+++.|+...++++.+.|++.. .|+.++.+|..+|++++|+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~---~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE---TWYQLAECYIQLGDFENAL 288 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH---HHHHHHHHHHhcCCHHHHH
Confidence 4466777888888899999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHH
Q 027087 154 AEMEDV 159 (228)
Q Consensus 154 ~~~~~a 159 (228)
..++..
T Consensus 289 laLNs~ 294 (395)
T PF09295_consen 289 LALNSC 294 (395)
T ss_pred HHHhcC
Confidence 888865
No 168
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-05 Score=64.83 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+.++..+.+++.++|..+..+.|++.++.+.++++.....-.++++++|+... +++.+|.++.+...|++|+..+.
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk---~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK---AHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH---HHHHHHHHHHhhccccHHHHHHH
Confidence 567777899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCH-----HHHHHHHHH
Q 027087 158 DVSISLKGYP-----EVHAALAAA 176 (228)
Q Consensus 158 ~al~~~~~~p-----~~~~~la~~ 176 (228)
++.......+ +....|..+
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 9955444332 455544443
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.05 E-value=3.1e-05 Score=74.90 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=80.9
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
.....++-.++.+++.||+|...|..+|.+|...|+|..|++.|++|..++|++.- +.|..+.+...+|+|.+|+..
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y---~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY---GRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH---HHHHHHHHHHHhhhHHHHHHH
Confidence 34566777788899999999999999999999999999999999999999999886 999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH
Q 027087 156 MEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la 174 (228)
+..++..-....-....++
T Consensus 653 l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 9998555444333333333
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.03 E-value=1.6e-05 Score=69.20 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=90.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
.-+.+..++|+..|...+..+|.|+..+.|++.+|.++++|..|+...+.|+.++-.+.. ||..+|.+-..+|...+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K---AYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK---AYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH---HHHHHHHHHHHHhhHHH
Confidence 345677899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~l 173 (228)
|.++++.+|++-|.+-+..-.+
T Consensus 184 AKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHhHHHHHhhCcccHHHHHHH
Confidence 9999999988888766554433
No 171
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.01 E-value=6.6e-06 Score=74.06 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=89.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+-.+.++..+..+++++|+.+..+-+++.++.+.++|-.|+..+.+|++++|.+.. +|+.+|.+....+++.+|
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRGTAVMALGEFKKA 91 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeeccHHHHhHHHHHHH
Confidence 34456788889999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
...|+......|++|.+...+..+
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999999988888888776655544
No 172
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=6.8e-05 Score=69.11 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=98.5
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.++..+.+.+.+.|++..+....-.++.+.++|++|+...++-..+.-++. -.+..+.|+|++|+.|+|+++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~----~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS----FFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch----hhHHHHHHHHHcccHHHHHHH
Confidence 4567788888899999999999999999999999999999944443222222222 136899999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++-. .+.++......+.++|.+ ++|++|...|+..++-+-++.+...
T Consensus 102 ~~~~---~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 102 LKGL---DRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred Hhcc---cccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 9966 777777888889999995 5999999999999888776666443
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.00 E-value=2.7e-05 Score=67.27 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG--DREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
++.+.......++.+.++++.|.+.++...+.+.|..- ....-+++....| ++.+|...|+++....+..+..++
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l---~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL---TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH---HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH---HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence 55677777888999999999999999999888777655 5555666666666 589999999999555556678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
.++.+... .|++++|++.++++++.+|+++++.
T Consensus 206 g~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 206 GLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHH
Confidence 89998888 5699999999999999999988753
No 174
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.00 E-value=8.5e-05 Score=69.39 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
...+|+........+|+.++|+..++++++..|++.. .|+.+|.++.++++.+.|...|...++..|..+-.|..++
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 3456677778888899999999999999999999999 8999999999999999999999999888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+--. .|..-.|+..++++.-.||++...+.
T Consensus 727 kleEk-~~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 727 KLEEK-DGQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred HHHHH-hcchhhHHHHHHHHHhcCCCcchhHH
Confidence 86555 45889999999999999999887544
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.99 E-value=0.00071 Score=52.27 Aligned_cols=119 Identities=20% Similarity=0.131 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGR-ELQAIGDFNKALQYFTLVVENYK---DFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~-~~~~~g~~~~Ai~~~~~Al~l~P---~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
...+...+...+..++.+.......+. ++...|+++.|+..|++++..+| .... ....++..+...+++++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE---ALLALGALLEALGRYEEAL 187 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHH---HHHHhhhHHHHhcCHHHHH
Confidence 444555555555544444333333334 56666666666666666655554 2222 3455555555566666666
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 154 AEMEDVSISLKG-YPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 154 ~~~~~al~~~~~-~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..+.+++...+. .......++..+.. .+++++|...+..++...|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcc
Confidence 666666554444 34455555555554 23556666666666666655
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.98 E-value=0.0005 Score=57.76 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC--
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-- 147 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-- 147 (228)
++.+..+.|+..+.+.....|.. ..+...++-++++.|+|++|+...++-+.+.|+++.+.|+++.+|++++..=
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45566788888888887777765 4678999999999999999999999999999999999999999999987632
Q ss_pred ------CHHHHHHHHHHHHHhcCCCH---HHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 148 ------DREEAIAEMEDVSISLKGYP---EVHA--------------ALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 148 ------~~~~A~~~~~~al~~~~~~p---~~~~--------------~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
-..+|+..++.++...|+.+ ++.. ..|..+.. .|.+..|+..++++++-.|+...
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHhccccccc
Confidence 23488999999988888764 2211 12333444 57899999999999998776554
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.00022 Score=61.27 Aligned_cols=127 Identities=17% Similarity=0.064 Sum_probs=84.8
Q ss_pred CCCchHHHHHHHHHH-----hcChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--C-CchhHHHHHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAV-----SSRVSD-ALELLEKGRELQAIGDFNKALQYFTLVVENYK--D-FAFSEYARVGRALALYE 145 (228)
Q Consensus 75 ~~~~~~a~~~~~~al-----~~~p~~-a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--~-~~~~~~a~~~la~~~~~ 145 (228)
....+.|...+.++. ..++.+ +..+.+.+.++.+ +++++|+..|++|+++.- + +..++..+.++|.+|..
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345555655555554 223333 3445555665544 499999999999998742 2 23334478999999999
Q ss_pred c-CCHHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 146 V-GDREEAIAEMEDVSISLKGY--P----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 146 ~-g~~~~A~~~~~~al~~~~~~--p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
. |++++|++.|++++.....+ + +....++.++.. .++|++|++.|+++....-+...
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccc
Confidence 9 99999999999997654422 2 455667777777 56999999999999886544443
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.00026 Score=65.79 Aligned_cols=127 Identities=17% Similarity=0.033 Sum_probs=103.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+.+...+|+.+|...+.|+..|.++.+.|++++|.+.++.|..+|+.+-- .-...+..+.+.|++++|
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy---iNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY---INSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH---HHHHHHHHHHHCCCHHHH
Confidence 35677889999999999999999999999999999999999999999999999999876 666677788899999999
Q ss_pred HHHHHHHHHhcCCCH--------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 153 IAEMEDVSISLKGYP--------EVHA--ALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 153 ~~~~~~al~~~~~~p--------~~~~--~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++.+..-.+... +| -.|+ .-|.++.. .|++..|...|..+.+..-++.+-
T Consensus 282 ~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r-~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 282 EKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLR-QGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999998833321 33 1233 34677777 468999999999998876655443
No 179
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.92 E-value=2.5e-05 Score=44.69 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
+.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3578899999999999999999999999998854
No 180
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.92 E-value=1.3e-05 Score=72.23 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
.-+.++.+...++|+.|+..|.+||+++|+.+. .+-|++.++.+.+++..|+.++.+++...|....+++-.|.+..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---YFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCccee---eechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 345677788899999999999999999999998 68999999999999999999999996666655577777777666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 179 VDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
. ++++.+|...|+....+.|+...+..
T Consensus 84 ~-l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 84 A-LGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred h-HHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 6 56999999999999999999988643
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.86 E-value=0.0008 Score=54.29 Aligned_cols=137 Identities=21% Similarity=0.145 Sum_probs=102.4
Q ss_pred hhCCCchHHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHcCCH
Q 027087 73 ATYDPLTQAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF--AFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~--~~~~~a~~~la~~~~~~g~~ 149 (228)
..++...++...+..++. +-.+|+..+..++++....+++.+|...+++..+-+|.. ++ ....+|.+|..+|++
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd---~~Ll~aR~laa~g~~ 176 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD---GHLLFARTLAAQGKY 176 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC---chHHHHHHHHhcCCc
Confidence 455666667666666663 455678889999999999999999999999999999875 44 688899999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCCh
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPP 215 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~ 215 (228)
++|...|+.++. .-.++++...++..+..+| +.++|...+..+.+---+ ...+|.+..+.|-+
T Consensus 177 a~Aesafe~a~~-~ypg~~ar~~Y~e~La~qg-r~~ea~aq~~~v~d~~~r-~~~H~rkh~reW~~ 239 (251)
T COG4700 177 ADAESAFEVAIS-YYPGPQARIYYAEMLAKQG-RLREANAQYVAVVDTAKR-SRPHYRKHHREWIK 239 (251)
T ss_pred hhHHHHHHHHHH-hCCCHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHh-cchhHHHHHHHHHH
Confidence 999999999933 3345688888888888855 568887766655432111 12345566666765
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.82 E-value=0.0012 Score=50.98 Aligned_cols=121 Identities=29% Similarity=0.223 Sum_probs=82.1
Q ss_pred CCchHHHHHHHHHHh--cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHHcCCHHHH
Q 027087 76 DPLTQAEKDASAAVS--SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL-ALYEVGDREEA 152 (228)
Q Consensus 76 ~~~~~a~~~~~~al~--~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~-~~~~~g~~~~A 152 (228)
.....+.......+. ..+.....++..|......+++.+++..+.+++..++++.. .....+. ++...|++++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a 149 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---AEALLALGALYELGDYEEA 149 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---HHHHHHHHHHHHcCCHHHH
Confidence 334455555555554 57777777888888888888888888888888887777655 5555556 78888888888
Q ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 153 IAEMEDVSISLK---GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 153 ~~~~~~al~~~~---~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+..+++++...+ .........+..+.. .+++++++..+.+++...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 150 LELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcc
Confidence 888888855333 122444444444444 45778888888888888777
No 183
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.81 E-value=0.00033 Score=64.53 Aligned_cols=121 Identities=22% Similarity=0.138 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
.+.+........+.-|+.+.-++..|.++...|+.++|++.|++++.......+. +-.++.+|+++.-+++|++|...+
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 4445555566668889999999999999999999999999999998655444331 124789999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHH-HHHHHHhcCCH-------HHHHHHHHHHHhcCC
Q 027087 157 EDVSISLKGYPEVHAAL-AAALYVDKHAL-------LLAENQFTIATLLDP 199 (228)
Q Consensus 157 ~~al~~~~~~p~~~~~l-a~~l~~~~~~~-------~~A~~~~~~al~l~P 199 (228)
.+.+....-....+.++ |.++.. .++. ++|.+.|+++-.+-.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~-l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLM-LGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHh-hccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99955433334444444 444544 5566 888888887766544
No 184
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00048 Score=55.67 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAA 175 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~ 175 (228)
+-..++..+...|++++|+..++.++..-.|.-...-+-.+++.++.++|.+|+|++.++.. ...+ +-.....|.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---~~~~w~~~~~elrGD 167 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI---KEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---ccccHHHHHHHHhhh
Confidence 34667888899999999999999998755443322236788999999999999999999887 3332 234556788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
++... |+.++|+..|+++++.++......
T Consensus 168 ill~k-g~k~~Ar~ay~kAl~~~~s~~~~~ 196 (207)
T COG2976 168 ILLAK-GDKQEARAAYEKALESDASPAARE 196 (207)
T ss_pred HHHHc-CchHHHHHHHHHHHHccCChHHHH
Confidence 88885 577999999999999986554433
No 185
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.76 E-value=0.00047 Score=64.13 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
.+++.++..|...|++++|+...+++|+..|..++ .++..|.++-..|++++|.+.++.+..++..|- ..+....-
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aK 270 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---LYMTKARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHH
Confidence 35688899999999999999999999999999999 899999999999999999999999933333332 23333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 027087 177 LYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 177 l~~~~~~~~~A~~~~~~al~l~ 198 (228)
+.-..|++++|++.+..-.+-+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCC
Confidence 4444689999999877665544
No 186
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.75 E-value=2.1e-05 Score=68.29 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Q 027087 107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLL 186 (228)
Q Consensus 107 ~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~ 186 (228)
...|+++.||+.|.+++.++|.... .+.+++.++.++++...|+..+..++...+.....+-..+.+... .|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~---l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAI---LYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccCCchhh---hcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHH
Confidence 3445555555555555555555555 555555555555555555555555533322222222223333323 234555
Q ss_pred HHHHHHHHHhcCCCCCchhhhhh
Q 027087 187 AENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 187 A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|...++.+++++-+-....|.++
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKe 223 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKE 223 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHH
Confidence 55555555555554444444443
No 187
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00031 Score=60.96 Aligned_cols=112 Identities=14% Similarity=0.006 Sum_probs=88.1
Q ss_pred hcChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 90 SSRVS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE-YARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 90 ~~~p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
+.+|+ .+.-+-.-|+-|++.++|..|+..|.+.|...-.+++.- -.|.|++-+.+..|+|..|+....+++...|.+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34444 355666779999999999999999999999876665421 1368999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.+++.=+.|++.+ .++++|..+.+..+.++-+..
T Consensus 154 Ka~~R~Akc~~eL-e~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 154 KAYIRGAKCLLEL-ERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhhhhhhHHHHHH-HHHHHHHHHHhhhhhhhHHHH
Confidence 8888778888885 477777777777666654433
No 188
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.72 E-value=7.7e-05 Score=42.70 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
+|+++|.++..+|++++|+..|++++...|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777555543
No 189
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0014 Score=60.71 Aligned_cols=128 Identities=17% Similarity=0.091 Sum_probs=92.7
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--------------------
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-------------------- 132 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-------------------- 132 (228)
.+++..++++.... ..|+.+.......+.+++++|+|++|.+.|+..++-+-++.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 34555666655554 3456666677888999999999999999999986544332210
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CC---C---H-----HHHHHHHHHHHHhcCCHHHHHH
Q 027087 133 --------EYARVGRALALYEVGDREEAIAEMEDVSISL----KG---Y---P-----EVHAALAAALYVDKHALLLAEN 189 (228)
Q Consensus 133 --------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~----~~---~---p-----~~~~~la~~l~~~~~~~~~A~~ 189 (228)
---+||.+.++...|+|.+|++.++.+++.. .. + . -++..++.++.. .|+.++|..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASS 245 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHH
Confidence 0147999999999999999999999994321 11 1 1 234556666666 458899999
Q ss_pred HHHHHHhcCCCCCch
Q 027087 190 QFTIATLLDPHYTDL 204 (228)
Q Consensus 190 ~~~~al~l~P~~~~~ 204 (228)
.|...++.+|.+...
T Consensus 246 iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHhcCCCchH
Confidence 999999999987753
No 190
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00062 Score=58.59 Aligned_cols=126 Identities=15% Similarity=0.082 Sum_probs=90.0
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
..++++.......+.+|.+-..+..+|-+|+...+|..|.++|++.-.+.|...+ -.+-.+..+++.+.+.+|+...
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q---YrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ---YRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---HHHHHHHHHHHhcccHHHHHHH
Confidence 3455555555556888888888999999999999999999999999999998877 4777788888888888887766
Q ss_pred HHHHH------------------------------hcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 157 EDVSI------------------------------SLK--GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 157 ~~al~------------------------------~~~--~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..+.. ..| ++.+...+.|-+++. .|++++|.+-|+.+++..--.+-.
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchh
Confidence 55411 011 122334444444555 468888888888888876655554
Q ss_pred hh
Q 027087 205 SY 206 (228)
Q Consensus 205 ~~ 206 (228)
.+
T Consensus 181 AY 182 (459)
T KOG4340|consen 181 AY 182 (459)
T ss_pred HH
Confidence 44
No 191
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.65 E-value=0.00013 Score=41.46 Aligned_cols=31 Identities=29% Similarity=0.203 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
+++.+|.+++.+|++++|++.|++++...|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666665544443
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.0017 Score=49.72 Aligned_cols=95 Identities=21% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch-------hH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF-------SE------------YARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~-------~~------------~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
...|......|+.+.++..+++++.+..+... |. -+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33344455556666666666666655422111 00 123344555556666666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
...|.+..++..+-.++... |+..+|++.|++..
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYR 123 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 66666666666666666553 35566666666553
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00083 Score=59.03 Aligned_cols=99 Identities=21% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---------
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP--------- 167 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--------- 167 (228)
..-..+|.++++.|||++|+..|.-+...+--+.+ .+.|++.+++-+|.|.+|...-.++ +.+|
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e---l~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE---LGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc---cchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence 44567789999999999999999999886655566 7999999999999999999988776 2222
Q ss_pred ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 168 ---------------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 168 ---------------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+-...++.+.|... .|++|++.|+++|.-+|++--
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhh
Confidence 11223445566644 799999999999999998764
No 194
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.0031 Score=57.61 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEVGDREEAIAEMEDVSISL--KGYPEVHAALAA 175 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~p~~~~~la~ 175 (228)
..++.+..+.|+.++||+.|+..++..|. +.. .+.|+-.++..+++|.++.+.+.+- ..+ |+.....+.-+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~---IrenLie~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN---IRENLIEALLELQAYADVQALLAKY-DDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh---HHHHHHHHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHH
Confidence 45577777788888888888888777665 233 6778888888888888877777775 111 122222222222
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHhcCCCCCch
Q 027087 176 ALYVDKHA---------------LLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 176 ~l~~~~~~---------------~~~A~~~~~~al~l~P~~~~~ 204 (228)
.-++..++ -..|.+...+|++.||+-+..
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 11111111 123557778888888877653
No 195
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.57 E-value=0.00016 Score=40.83 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
+++++|.++.+.|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
No 196
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.55 E-value=7.2e-05 Score=65.02 Aligned_cols=95 Identities=18% Similarity=0.075 Sum_probs=80.3
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.++..+..++.++|..+..|-.++.++.++++...||..++.+++++|+... .+-.+|.+...+|++++|..+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~---~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK---GYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc---ccchhhHHHHHhhchHHHHHH
Confidence 33566777777889999999999999999999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH
Q 027087 156 MEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la 174 (228)
++.+.. +.-+++.-..+-
T Consensus 205 l~~a~k-ld~dE~~~a~lK 222 (377)
T KOG1308|consen 205 LALACK-LDYDEANSATLK 222 (377)
T ss_pred HHHHHh-ccccHHHHHHHH
Confidence 999932 333444433333
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0014 Score=55.58 Aligned_cols=113 Identities=18% Similarity=0.060 Sum_probs=92.7
Q ss_pred HHHhcC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 87 AAVSSR-VSDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 87 ~al~~~-p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
..++.+ |.++.....+|.+.++.||.+.|...|+++-+.. -+.-. ...|.+.++...+++.+|...|.+.
T Consensus 202 ~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~---V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 202 SVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM---VLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH---HHhhhhhheecccchHHHHHHHhhc
Confidence 344555 6678888899999999999999999999654322 12233 5788899999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
++.++.++.+.++.+.|+...| +...|++..+.++.++|...-
T Consensus 279 ~~~D~~~~~a~NnKALcllYlg-~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 279 LRMDPRNAVANNNKALCLLYLG-KLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred cccCCCchhhhchHHHHHHHHH-HHHHHHHHHHHHhccCCccch
Confidence 8888889988888998888854 789999999999999997554
No 198
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.52 E-value=0.002 Score=61.99 Aligned_cols=57 Identities=14% Similarity=-0.051 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+..+...|.+.|++++|.+.|++. ...|...+..+...+.. .|+.++|.+.|++.++
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m---~~~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRM---PRKNLISWNALIAGYGN-HGRGTKAVEMFERMIA 419 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhC---CCCCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 444555555555566666655555 33444455555555544 3456666666666554
No 199
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.51 E-value=0.0033 Score=61.98 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=87.2
Q ss_pred CCCchHHHHHHHHHHhcChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHc
Q 027087 75 YDPLTQAEKDASAAVSSRVS-----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEV 146 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~-----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~ 146 (228)
.+..+.+...+..+++..+. ...+...+|.++...|++++|+..+++++........ ..+++.++|.+++..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 44556666666666653332 2345678899999999999999999999876543211 123567889999999
Q ss_pred CCHHHHHHHHHHHHHhcCCC-----H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 147 GDREEAIAEMEDVSISLKGY-----P---EVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~-----p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|++++|...+++++...... + ..+..++.+++.. |++++|...+++++.+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLS 604 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhh
Confidence 99999999999986643321 1 2344567777774 688999999998887644
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.00019 Score=63.99 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhcCC
Q 027087 75 YDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGD--------------------FNKALQYFTLVVENYKD 128 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~--------------------~~~Ai~~~~~Al~l~P~ 128 (228)
....++|+.++.+-+.. .-..+.++||+|++|...|+ ++.|.++|..-+++.-.
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655422 12346789999999977665 23455555555544332
Q ss_pred Cch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 129 FAF---SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 129 ~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
..+ .+.++-|+|+.||-+|+|++|+..-+.=+.+...+- .++.++|.++... |+++.|+++|++.+.+
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-g~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-GNFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-cccHhHHHHHHHHHHH
Confidence 211 123677889999999999999887776655544432 4677888888884 5889999999887655
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0056 Score=51.83 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=80.8
Q ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087 98 ELLEKGRELQ----AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 98 a~~~lG~~~~----~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l 173 (228)
.+..++.++. ..+++.+|.-.|+..-+.-|-.+. ..+.++.|+..+|||++|...++.++...+++|+.+.++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~---llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPL---LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChH---HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3444444443 235677777777777664444455 678888888888999999999998888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHHHHHhhc
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFIT 226 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
-.+-...|.+.+.-.+...+....+|..+-.-...+ -...|+|+..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~e-------keaeFDrl~~ 293 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNE-------KEAEFDRLVL 293 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHH-------HHHHHHHHHH
Confidence 777666666655556666677777777665432222 1556666654
No 202
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.001 Score=57.31 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred HhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 89 VSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 89 l~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
++.-| +++....+.|-++++.|+|++|++-|+.|++..--.+. .-+|++.++++.|+++.|++...+++..
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34445 67888999999999999999999999999999998888 8899999999999999999998887543
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0015 Score=56.16 Aligned_cols=123 Identities=15% Similarity=-0.038 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQA-IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~-~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
...+...+.++.+..+....+|...+.+-+. .++.+.|...|+++++..|++.. .|......+...|+.+.|...|
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---FWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHhCcHHHHHHHH
Confidence 3445555566665555677888888888666 56666699999999999999888 7888888888899999999999
Q ss_pred HHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 157 EDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 157 ~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++++..++.+. ..+......-.. -|+.+.....++++.+..|+....
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFESK-YGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99965555444 233333333333 368888888888999888885543
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.47 E-value=0.0013 Score=58.20 Aligned_cols=118 Identities=15% Similarity=-0.045 Sum_probs=86.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..++|.......++...+.- +..+ .-..+-+++..=++..++.++..|+++. .+..+|..+++.+.+.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~---L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL---LLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChh---HHHHHHHHHHHhhHHHH
Confidence 4567888888888777776544433 1111 1134568888888888999999999998 88999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
|...|+.++. ...+...+..+|.++-. .|+..+|.+.++.++.+
T Consensus 347 A~~~leaAl~-~~~s~~~~~~la~~~~~-~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 347 ASEALEAALK-LRPSASDYAELADALDQ-LGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHh-cCCChhhHHHHHHHHHH-cCChHHHHHHHHHHHHH
Confidence 9999998822 22334566677887777 45788999988888754
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0073 Score=51.82 Aligned_cols=103 Identities=22% Similarity=0.147 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV----------------- 159 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a----------------- 159 (228)
+.-+..+.-....|++.+|...|..++..+|++.+ +...++.+|...|+.++|...+...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch---HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455666777888888888888888888888877 7888888888888887766665542
Q ss_pred -----------------HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 160 -----------------SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 160 -----------------l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..+|.|.++.+.++..+.. .|+.++|.+++-..++.|-.+.+
T Consensus 212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccC
Confidence 22345666777777777766 45778888888888887766555
No 206
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.44 E-value=0.0047 Score=48.52 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
+.....+-.+.++.+++...++..-.+.|+++. ....-|+++...|++.+|+..|+.+...-+..|-+...++.|++
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 334444444455555555555555555555555 45555555555555555555555553333344444444444444
Q ss_pred H
Q 027087 179 V 179 (228)
Q Consensus 179 ~ 179 (228)
.
T Consensus 90 ~ 90 (160)
T PF09613_consen 90 A 90 (160)
T ss_pred H
Confidence 4
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0014 Score=50.32 Aligned_cols=64 Identities=22% Similarity=0.083 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
..+...++..+...|++++|+..+++++.++|.+.. ++..+-.+|...|+..+|++.|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~---~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEE---AYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345677788899999999999999999999999999 9999999999999999999999998443
No 208
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.42 E-value=0.00035 Score=40.80 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENY 126 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~ 126 (228)
++.++|.++.++|+|++|+..|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778888888888888888888865544
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.00013 Score=65.08 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHhcC--hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHcCC
Q 027087 78 LTQAEKDASAAVSSR--VS----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE---YARVGRALALYEVGD 148 (228)
Q Consensus 78 ~~~a~~~~~~al~~~--p~----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~---~a~~~la~~~~~~g~ 148 (228)
.+.|..++..-+++. -. ...++-++|+.|+-+|+|++||..-+.-+++.-.+.+-+ .|+.|+|+++..+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555555444321 12 234677899999999999999999888888876654311 378899999999999
Q ss_pred HHHHHHHHHHHHHhc---CC-C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 149 REEAIAEMEDVSISL---KG-Y--PEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 149 ~~~A~~~~~~al~~~---~~-~--p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
++.|+++|+..+.+. .+ . ...-+.||..|.- +++++.|+.++.+-|.+.-
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999985432 21 1 2456778888877 5689999999999887754
No 210
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.39 E-value=0.002 Score=45.82 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
+......++.+|+|..+.+.++..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344455667777777777777777777777777777777777777766
No 211
>PLN03077 Protein ECB2; Provisional
Probab=97.39 E-value=0.0089 Score=58.95 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCchHHHHHHHHHHh--cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 76 DPLTQAEKDASAAVS--SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 76 ~~~~~a~~~~~~al~--~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
+..+.|...+....+ ..|+ ...+..+-..+.+.|++++|...|+...+. .|+. . .+..+..++.+.|+++
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~---~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-K---HYACVVDLLGRAGKLT 642 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-H---HHHHHHHHHHhCCCHH
Confidence 344445555544443 2232 333444445566677777777777766633 2332 2 4667777777788888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCCh
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPP 215 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~ 215 (228)
+|.+.+++. . ...++..|..+-.++.. .++.+.++...+++++++|++...+. .....+|.+
T Consensus 643 eA~~~~~~m-~-~~pd~~~~~aLl~ac~~-~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 643 EAYNFINKM-P-ITPDPAVWGALLNACRI-HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHC-C-CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 887777775 1 23345556665554433 56778888888888899998777544 233456766
No 212
>PRK10941 hypothetical protein; Provisional
Probab=97.36 E-value=0.0027 Score=54.27 Aligned_cols=71 Identities=11% Similarity=0.015 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
...|+=.++.+.++++.|+.+.++.+.++|+++. -+--+|.+|.++|.+..|..+++.-+...|.+|++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3567788899999999999999999999999997 8899999999999999999999999999999996654
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.009 Score=58.95 Aligned_cols=125 Identities=18% Similarity=0.049 Sum_probs=87.3
Q ss_pred CCCchHHHHHHHHHHhc-----Ch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSS-----RV-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-----AFSEYARVGRALAL 143 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~-----~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-----~~~~~a~~~la~~~ 143 (228)
.+..+.+...+..++.. ++ .....+.++|.++...|++++|+..+++++++.... ....+.+..+|.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34445555555555422 11 123466788999999999999999999998874321 21123567889999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 144 YEVGDREEAIAEMEDVSISLKGY-----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~-----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+..|++++|...+++++...... ...+..++.+... .|++++|.+.+++++.+...
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-RGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999996654321 2344556676666 56899999999999877543
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.32 E-value=0.011 Score=59.56 Aligned_cols=95 Identities=14% Similarity=-0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-KGYPEVHAA 172 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~p~~~~~ 172 (228)
...|..+...|.+.|++++|+..|++..+. .|+. . .+..+...+.+.|++++|.+.++++.... +.+...+..
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~---TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-V---FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344444444555555555555555554443 2331 1 34444444455555555555555542211 112233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 027087 173 LAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al 195 (228)
+..++.. .|++++|++.|++..
T Consensus 690 LI~ay~k-~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 690 LMGACSN-AKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHh-CCCHHHHHHHHHHHH
Confidence 4444444 334555555555443
No 215
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.24 E-value=0.00051 Score=37.08 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD 128 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~ 128 (228)
..++++|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777777777777777777777777665
No 216
>PLN03077 Protein ECB2; Provisional
Probab=97.21 E-value=0.0088 Score=59.00 Aligned_cols=118 Identities=15% Similarity=0.045 Sum_probs=89.3
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
.+.+..+.|...+... ..|...|..+...|.+.|+.++|++.|++..+. .|+.. .+..+-.++...|+.+
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----TFISLLCACSRSGMVT 606 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHHHhhcChHH
Confidence 3444555555554443 567788999999999999999999999998774 57765 4666777889999999
Q ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 151 EAIAEMEDVSISLKGYP--EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p--~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+|.+.|+++.......| +.+..+..++.. .|++++|.+.+++. .+.|+
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCCC
Confidence 99999999954444444 566677777777 67999999999876 35565
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.013 Score=50.39 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-GDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
.+|..+.....+.+..+.|...|.+|++..+-... .|...|.+.+.. ++.+.|.+.|+.++...+.+++.+..+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35777788888888899999999999865555566 788999998885 55555999999999999999999988888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.+... ++.+.|+..|++++..-|...
T Consensus 79 ~l~~~-~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 79 FLIKL-NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHT-T-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHh-CcHHHHHHHHHHHHHhcCchh
Confidence 88874 588999999999999877655
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.13 E-value=0.0009 Score=37.56 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
+++++|.++.+.|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6777888888888888888888887555443
No 219
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.10 E-value=0.02 Score=50.83 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l 173 (228)
+++......+.-+.+.|++++|.+....+++..=|... ... .-...-++.+.=++..++.+...|.+|..+..|
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 34566667777788999999999999999876554321 111 223456888888999999988899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|..++. .+.+.+|.++|+.+++..|...+..+
T Consensus 335 G~L~~k-~~~w~kA~~~leaAl~~~~s~~~~~~ 366 (400)
T COG3071 335 GRLALK-NKLWGKASEALEAALKLRPSASDYAE 366 (400)
T ss_pred HHHHHH-hhHHHHHHHHHHHHHhcCCChhhHHH
Confidence 998888 45899999999999999998766433
No 220
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.10 E-value=0.04 Score=55.67 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 78 LTQAEKDASAAVSSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+.+...+....+... -|...|..+...|.+.|++++|+..|++..+. .|+. . .|..+...+.+.|++++|.+
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-v---TYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-V---VFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-H---HHHHHHHHHHHCCCHHHHHH
Confidence 3444444444333221 14556666677777777777777777776543 2442 2 56667777777777777777
Q ss_pred HHHHHHHh---cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 155 EMEDVSIS---LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 155 ~~~~al~~---~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.|+++... +..|...+..+-.++.. .|++++|++.|+++.+.+
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k-~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACAN-AGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcC
Confidence 77776332 11233344445555555 456777777777776654
No 221
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.08 E-value=0.019 Score=55.34 Aligned_cols=100 Identities=18% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
.+..+-.++.+.|+.++|...|+...+. .|+.. .+..+...|.+.|++++|.+.+++. - ...+...+..+.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~----~y~~li~~l~r~G~~~eA~~~~~~~-~-~~p~~~~~~~Ll 501 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM----HYACMIELLGREGLLDEAYAMIRRA-P-FKPTVNMWAALL 501 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc----chHhHHHHHHhcCCHHHHHHHHHHC-C-CCCCHHHHHHHH
Confidence 3444445555555555555555555442 23322 3566667777777777777776654 0 112335566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.++.. .|+++.|+..++++++++|++...
T Consensus 502 ~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 502 TACRI-HKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred HHHHH-cCCcHHHHHHHHHHhCCCCCCCcc
Confidence 65655 567888988899999999886654
No 222
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.08 E-value=0.009 Score=42.49 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087 115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFT 192 (228)
Q Consensus 115 Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~ 192 (228)
.+..+++.++.+|++.+ +.+.+|..+...|++++|++.+-++++..+.+ -.+...+-.++-..|.. +.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~---ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD---ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HH---HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHH
Confidence 46788999999999999 99999999999999999999999996655543 24555555544444432 33333344
Q ss_pred H
Q 027087 193 I 193 (228)
Q Consensus 193 ~ 193 (228)
+
T Consensus 83 R 83 (90)
T PF14561_consen 83 R 83 (90)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.012 Score=51.59 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=38.9
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
+++.++..|.|-.++-.--.+++..|+.+.-...+++++-. +++-+-..|..-.++..+.+.|-|++|.+..++++..+
T Consensus 126 wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN 205 (491)
T KOG2610|consen 126 WDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN 205 (491)
T ss_pred HHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence 33444444555444444444444444444444444444433 33333222333334444444444444444444444443
Q ss_pred CCCHHHHHHHHH
Q 027087 164 KGYPEVHAALAA 175 (228)
Q Consensus 164 ~~~p~~~~~la~ 175 (228)
+.|..+....+.
T Consensus 206 ~~D~Wa~Ha~aH 217 (491)
T KOG2610|consen 206 RFDCWASHAKAH 217 (491)
T ss_pred CcchHHHHHHHH
Confidence 333333333333
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.018 Score=48.52 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
-.+.|...++...|+|-++++.-..++..+|++.. |++.+|.++...=+.++|.++|.++ +..+|
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK---A~frRakAhaa~Wn~~eA~~D~~~v---L~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK---AYFRRAKAHAAVWNEAEAKADLQKV---LELDP 295 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHHHHhhcCHHHHHHHHHHH---HhcCh
Confidence 45789999999999999999999999999999999 9999999999999999999999999 55565
No 225
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.94 E-value=0.023 Score=55.12 Aligned_cols=124 Identities=12% Similarity=0.016 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
...|.......++..|+..-+..-.|.++.++|+.++|..+++..-...+++.. .+-.+-.+|.++|++++|...|+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~---tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL---TLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH---HHHHHHHHHHHHhhhhHHHHHHH
Confidence 345666677788999999888899999999999999999999888888888877 88899999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++...|. -+....+-.++.+.+ .|.+=.+.--+.-+.-|+.+-.-|
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREK-SYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcccchHH
Confidence 99444443 234444444444432 333333322223334555544433
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.94 E-value=0.0024 Score=37.20 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
++.++|.+|.++|++++|++.|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999964
No 227
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.89 E-value=0.0053 Score=39.22 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR 139 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~l 139 (228)
.+|.++..+++.|+|++|....+.+++.+|++.+ +....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q---a~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ---AQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH---HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH---HHHHH
Confidence 3567777778888888888888888888888877 54443
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.88 E-value=0.003 Score=35.78 Aligned_cols=30 Identities=23% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
+++.+|.++..+|++++|++.|++++...|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 578888888888888888888888866555
No 229
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.85 E-value=0.004 Score=53.89 Aligned_cols=77 Identities=14% Similarity=-0.013 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
+..-.+.+.-..+.|+.++|...|+-|+.++|++++ ++..+|......++.-+|-.+|-+++...|.+.+++.+...
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---ILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 445566677778999999999999999999999999 99999999999999999999999998888888888777653
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.018 Score=51.39 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-hcCCC
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYE---VGDREEAIAEMEDVSI-SLKGY 166 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~-~~~~~ 166 (228)
+++...++=..|...++|+.-+...+..-.+ -++... ..+.+|.++.+ .|+.++|+..+..++. ....+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~---i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHN---IKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchH---HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 3556678878899999999999999887666 344455 78899999999 9999999999999533 33456
Q ss_pred HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC
Q 027087 167 PEVHAALAAALYVD--------KHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 167 p~~~~~la~~l~~~--------~~~~~~A~~~~~~al~l~P~~~ 202 (228)
|+.+-.+|.++... ....++|+.+|+++.+++|++-
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 88888888876554 1357899999999999998643
No 231
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.82 E-value=0.023 Score=57.57 Aligned_cols=103 Identities=15% Similarity=0.006 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVHAALA 174 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~~~la 174 (228)
..|..+..+|.+.+++++|.+.|+..++.--+-.. .|..+|..++.+++-++|...+.+++.-+|. +.+...-.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~---vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK---VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh---HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 34455555555555555565555555555444444 5555555555555555555555555555554 233333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
.+-|. .|+-+.++..|+-.+.-+|+=.+
T Consensus 1608 qLEFk-~GDaeRGRtlfEgll~ayPKRtD 1635 (1710)
T KOG1070|consen 1608 QLEFK-YGDAERGRTLFEGLLSAYPKRTD 1635 (1710)
T ss_pred HHHhh-cCCchhhHHHHHHHHhhCccchh
Confidence 44444 23445555555555555554433
No 232
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.81 E-value=0.0027 Score=59.05 Aligned_cols=99 Identities=16% Similarity=0.026 Sum_probs=86.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 027087 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKH 182 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~ 182 (228)
|......|+.-.|++++.+|+.+.|....| ...|++.++...|-..+|-..+.+++..+-..|-.++.+|.++..+ .
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v--~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~ 690 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV--PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-K 690 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcc--cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-h
Confidence 444456899999999999999999986664 5799999999999999999999999888867788888899988885 5
Q ss_pred CHHHHHHHHHHHHhcCCCCCch
Q 027087 183 ALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 183 ~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+.+.|+++|+.|+.++|+....
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhh
Confidence 8899999999999999998764
No 233
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.80 E-value=0.051 Score=55.15 Aligned_cols=121 Identities=8% Similarity=-0.016 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
...+.|...++..++.--+....|..+|..+.++.+-++|...+.+|++.-|. +.+ ..-..+..-++.|+.+.+.
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~---~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE---FISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH---HHHHHHHHHhhcCCchhhH
Confidence 33444444444444443445566666777777777777777777777777666 444 4556666667777777777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..|+..+...|.--+.|..+...-... ++.+-.+..|++++.+.=.
T Consensus 1621 tlfEgll~ayPKRtDlW~VYid~eik~-~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKH-GDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHhhCccchhHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCC
Confidence 777777555555556666555544443 3456677777777666533
No 234
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.028 Score=47.70 Aligned_cols=104 Identities=14% Similarity=-0.043 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
++...-..++.++.+++-|+..+++..+++-+.. +..+|.++.. .+.+.+|.-.|++.-.+.+..|....+
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t-----LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG 212 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT-----LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-----HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence 3344445777899999999999999988876643 3445544443 355889999999995556666788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++.+...+ ++|++|...++.+|..+++++++.-
T Consensus 213 ~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 213 QAVCHLQL-GRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHhccCCCHHHHH
Confidence 88888885 5999999999999999999988643
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.098 Score=45.04 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL--------------------------------- 121 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~--------------------------------- 121 (228)
.+....+...+..++..+|++.++...++.++...|+.++|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34445555666777899999999999999999999999777665543
Q ss_pred -HHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHH
Q 027087 122 -VVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYV 179 (228)
Q Consensus 122 -Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~ 179 (228)
.+..+|++.+ +.+.+|..+...|++++|.+.+-..++.+... ..+...+-.++..
T Consensus 227 ~~~aadPdd~~---aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 227 RRLAADPDDVE---AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 2244788998 99999999999999999999999886554432 2444444443333
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.011 Score=51.90 Aligned_cols=101 Identities=18% Similarity=0.054 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHH------HHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG-YPE------VHA 171 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~p~------~~~ 171 (228)
....+.++...|++-+|-..+++.+.-.|.+-. ++..--.+++.+|+.+.-...++++ +|. +++ .+-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---a~kfsh~a~fy~G~~~~~k~ai~kI---ip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---AVKFSHDAHFYNGNQIGKKNAIEKI---IPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhh---hhhhhhhHHHhccchhhhhhHHHHh---ccccCCCCcHHHHHHH
Confidence 344466677889999999999999999999988 8888888999999999999999999 665 442 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++..+.+ .|-|++|++.-++++++||.+..+.+
T Consensus 180 myaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 180 MYAFGLEE-CGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred HHHhhHHH-hccchhHHHHHHhhccCCCcchHHHH
Confidence 34444555 46899999999999999999988655
No 237
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0067 Score=53.51 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL 184 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~ 184 (228)
+....||..|+..++-.+.++-+.. + ....+|.|++.+|+|++|...|+-+......+.+.+.+++.+.+..| .|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~---~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg-~Y 107 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDS---LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG-QY 107 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHH---HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH-HH
Confidence 3455788888888877765554433 3 56788999999999999999999995544444588999999999954 89
Q ss_pred HHHHHHHHHH
Q 027087 185 LLAENQFTIA 194 (228)
Q Consensus 185 ~~A~~~~~~a 194 (228)
.+|.....++
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 9998855443
No 238
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.66 E-value=0.014 Score=56.52 Aligned_cols=90 Identities=22% Similarity=0.213 Sum_probs=75.3
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCHH
Q 027087 107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALL 185 (228)
Q Consensus 107 ~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~p~~~~~la~~l~~~~~~~~ 185 (228)
...++|.+|+...++.++..|+..- +....|.++.++|+.++|..+++.. ...+ .|-.....+-.+|.. .++++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~---a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~D~~tLq~l~~~y~d-~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALY---AKVLKALSLFRLGKGDEALKLLEAL-YGLKGTDDLTLQFLQNVYRD-LGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHhcCchhHHHHHhhh-ccCCCCchHHHHHHHHHHHH-Hhhhh
Confidence 4568999999999999999999886 9999999999999999999888887 3333 333455566666666 56899
Q ss_pred HHHHHHHHHHhcCCCC
Q 027087 186 LAENQFTIATLLDPHY 201 (228)
Q Consensus 186 ~A~~~~~~al~l~P~~ 201 (228)
+|...|++++..+|+.
T Consensus 95 ~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHHHhhCCcH
Confidence 9999999999999993
No 239
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.62 E-value=0.02 Score=45.00 Aligned_cols=101 Identities=24% Similarity=0.197 Sum_probs=75.5
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+++.......--+.|+.++.-..-|.++...|+|.+|+..|+.+.+..|.++. +--.++.|++.+||.+ -.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~---~kALlA~CL~~~~D~~-Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY---AKALLALCLYALGDPS-WR 97 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH---HHHHHHHHHHHcCChH-HH
Confidence 4455566666666666788999999999999999999999999999999998899887 8899999999998875 22
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
.+-+++ .....+|++......++..
T Consensus 98 ~~A~ev-le~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 98 RYADEV-LESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHH-HhcCCChHHHHHHHHHHHh
Confidence 223333 2233467666655554433
No 240
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.60 E-value=0.083 Score=41.07 Aligned_cols=97 Identities=15% Similarity=-0.016 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
+......-...++.+++...++..--+.|+.+. ....-|+++...|++++|+..++++...-+..|-....++.|++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 333444444578888888888888888888888 77888888888888888888888884433344655566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 027087 179 VDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~P~ 200 (228)
.++ + ..=..+-..+++.+++
T Consensus 90 al~-D-p~Wr~~A~~~le~~~~ 109 (153)
T TIGR02561 90 AKG-D-AEWHVHADEVLARDAD 109 (153)
T ss_pred hcC-C-hHHHHHHHHHHHhCCC
Confidence 643 3 4444445556655444
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.01 Score=54.74 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV---GDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
+.+....-|+-....+....|+..|.+++...|+... .+.|++.++.+. |+.-.|+.....+++.++..-.+|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~---~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY---LLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH---HHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 3333444444444444455555555555555555444 455555555442 3334444444444222222224555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
.|+.++.+. +++.+|++....+.-..|
T Consensus 450 ~la~aL~el-~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNEL-TRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHH-hhHHHhhhhHHHHhhcCc
Confidence 555555553 245555554444444444
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.016 Score=50.58 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
++..|+|++.+....|+|-.||....+++.++|.+.. +++.-+.|++++.++++|..++++.
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K---a~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK---AYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh---hhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 4667899999999999999999999999999999999 9999999999999999999999998
No 243
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.11 Score=43.47 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=73.0
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------
Q 027087 99 LLEKGRELQA-IGDFNKALQYFTLVVENYKDFAFSE---YARVGRALALYEVGDREEAIAEMEDVSISLKGYPE------ 168 (228)
Q Consensus 99 ~~~lG~~~~~-~g~~~~Ai~~~~~Al~l~P~~~~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~------ 168 (228)
+..+|.+|.. ..++++||.+|+++-+-......+. ..+...+..-.++++|.+|+..|+++.+..-.++-
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 3466787775 4899999999999987665443210 12344445556789999999999999665555552
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 169 VH-AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 169 ~~-~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
-+ +.-|.|+.. ..+.-.+...+++-.+++|.+.+++=
T Consensus 196 dyflkAgLChl~-~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 196 DYFLKAGLCHLC-KADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHhHh-cccHHHHHHHHHHHHhcCCcccccHH
Confidence 12 222344443 34667788889999999999998743
No 244
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.47 E-value=0.0083 Score=35.29 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVEN 125 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l 125 (228)
++.++|.++..+|++++|+..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555555555555555555555555544
No 245
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.023 Score=48.30 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAAL 173 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~l 173 (228)
.++.+.+.++.-+++|.+|...|++.+..||.++. +-+|.|.|+.-.|+..+|++..+.++..+|... ...+++
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV---ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchh---hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 34556678888999999999999999999999999 899999999999999999999999955555432 344455
Q ss_pred HH
Q 027087 174 AA 175 (228)
Q Consensus 174 a~ 175 (228)
..
T Consensus 330 ~t 331 (366)
T KOG2796|consen 330 TT 331 (366)
T ss_pred HH
Confidence 44
No 246
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.33 E-value=0.029 Score=39.98 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAF------SEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
..+.|||.+|++.+.+.......... ..++..++|.++...|++++|+..+++++.....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46789999999998888776544322 2368899999999999999999999999766553
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.27 E-value=0.0063 Score=50.60 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=23.0
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 83 KDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 83 ~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
..+.+++++-|+++..|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 16 ely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 16 ELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 33444444445555555555554445555555555555555555444
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.23 E-value=0.0095 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+++++|.++..+|++++|+..+++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466777777777777777777777743
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.23 E-value=0.027 Score=48.93 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK 208 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~ 208 (228)
-.+.+.-..+.|+.++|...|+.++...|.+|+++..+|.+.-. .+++-+|-.+|.+||.++|.+.++...+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34555566788999999999999999999999999999997766 5688999999999999999998876543
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.13 E-value=0.056 Score=49.62 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=86.2
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----------------------h
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----------------------S 132 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----------------------~ 132 (228)
-.....-+..+.++++++|+-+.+|.-++.- ...-..+|++.|+++++....... -
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 3445556677788999999999998877542 234567788888887765322100 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 133 EYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 133 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
.|+...+|++..++|+.+||++.++++++..|.. -.++.+|-.++..+ ++|.++...+.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel-q~Yad~q~lL~k 320 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL-QAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 2677889999999999999999999997766652 37899999999885 588999886555
No 251
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.12 E-value=0.39 Score=36.10 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=66.3
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhcCCCch---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087 97 LELLEK--GRELQAIGDFNKALQYFTLVVENYKDFAF---------SEYARVGRALALYEVGDREEAIAEMEDVSIS--- 162 (228)
Q Consensus 97 ~a~~~l--G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--- 162 (228)
.+|+.+ |.-....|-|++|...++++++..-.-+. .+..+..++-++..+|+|++++...+++|.-
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 345544 34445679999999999999988754321 1124667888899999999998888888542
Q ss_pred ---cCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 163 ---LKGYP-----EVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 163 ---~~~~p-----~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+..+- .+.+..+.++-. .|+.++|...|+.+-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 22332 234556676766 45889999999988763
No 252
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.12 E-value=0.077 Score=40.61 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 135 ARVGRALALYEVGD---REEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 135 a~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
..+|+++++....+ ..+.+.+++..+. ..+| +..++++..++..+ +|+.++.+.+..|+.+|++.++.-.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 57777777777654 3467777777743 1233 66677777777744 7888888888888888887776544
Q ss_pred hh
Q 027087 208 KD 209 (228)
Q Consensus 208 ~~ 209 (228)
++
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 33
No 253
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.99 E-value=0.2 Score=44.95 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=23.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL 121 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~ 121 (228)
...+..+.+.++...+..+-|.-.-++...=...+..|||+.|++..+.
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3444455555555555555554444433333334445555555554443
No 254
>PRK10941 hypothetical protein; Provisional
Probab=95.98 E-value=0.063 Score=45.94 Aligned_cols=74 Identities=12% Similarity=-0.111 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
-..|+=.+|.+.++++.|+++.+.++...|.+|.-+.-+|.++.++ |.+..|...++.-++.-|+++.+..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4678888999999999999999999999999998888899988885 5889999999999999999999877554
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.96 E-value=0.021 Score=33.43 Aligned_cols=28 Identities=29% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
++.++|.+|..+|++++|+..+++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 7899999999999999999999999553
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.92 E-value=0.55 Score=41.12 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 84 DASAAVSSRVSDALELLEKGRELQAI------------GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~~~------------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
.+.+.++.+|.|...|..+....-.. .-.+.-+..|++|++.+|++.. .+..+-.+..+..+.++
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~---L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER---LLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHH
Confidence 45667888999999998886544332 2256778899999999999988 67777677778889999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVD--KHALLLAENQFTIATLL 197 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~--~~~~~~A~~~~~~al~l 197 (228)
-.+.+++++...+.++..|..+-...... .-.++..+..|.++|+.
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999999888888887776544332221 12467788888887765
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.014 Score=53.29 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----cCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVE-----N----YKD---------FAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l----~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
...|+|+|.++++.|.|..++..|.+|++ + .|. .-. ..||.|..|...|+.-.|.++|.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e---ilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME---ILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh---hHHhhhHHHHhcCCcHHHHHHHH
Confidence 34578999999999999999999999996 1 111 123 68999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHh
Q 027087 158 DVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~ 180 (228)
+++.....+|..|..++.+....
T Consensus 360 ~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 99988899999999998876653
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.17 Score=40.46 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHH---
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVH--- 170 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~--- 170 (228)
-.++..+|.-|.+.||+++|++.|.++.+..-........++++-.+.+..|++......+.++-..+.. +.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4578899999999999999999999988765554333336778888888999999999999999443333 12222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 171 -AALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 171 -~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
..-|..... .++|.+|-+.|-.+ .+.+.
T Consensus 116 k~~~gL~~l~-~r~f~~AA~~fl~~---~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLA-QRDFKEAAELFLDS---LSTFT 144 (177)
T ss_pred HHHHHHHHHH-hchHHHHHHHHHcc---CcCCC
Confidence 222333333 46888888776544 45554
No 259
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.1 Score=47.99 Aligned_cols=85 Identities=12% Similarity=-0.081 Sum_probs=49.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 027087 84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-REEAIAEMEDVSIS 162 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~ 162 (228)
.++++...-+.|...|.+...-..+.+.+.+--..|.+++..+|++++ .|.--|.-.+..+. .+.|...+.++++.
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---LWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---LWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---hHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 345555555556666666555444444466666666666666666666 56555555555555 56666666666666
Q ss_pred cCCCHHHHH
Q 027087 163 LKGYPEVHA 171 (228)
Q Consensus 163 ~~~~p~~~~ 171 (228)
.|+.|..+.
T Consensus 170 npdsp~Lw~ 178 (568)
T KOG2396|consen 170 NPDSPKLWK 178 (568)
T ss_pred CCCChHHHH
Confidence 666665444
No 260
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.62 E-value=0.5 Score=40.23 Aligned_cols=104 Identities=19% Similarity=0.075 Sum_probs=79.3
Q ss_pred hcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYEVG-------DREEAIAEME 157 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g-------~~~~A~~~~~ 157 (228)
..+..++.+.+++|.++.. ..|+.+|...|++|.+..-.. .. +.+++|.+|..-+ +...|+..|+
T Consensus 103 ~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~---~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 103 AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL---AMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH---HHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 3345677788999999987 559999999999998764332 12 4888988887642 3347999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCC
Q 027087 158 DVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDP 199 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P 199 (228)
++-. ..++++.+.+|.++.. | .++++|..+|.++-+...
T Consensus 180 ~aa~--~~~~~a~~~lg~~y~~-G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 180 KAAE--LGNPDAQLLLGRMYEK-GLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHH--hcCHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHHCCC
Confidence 9832 2378899999977665 3 488999999999999876
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.60 E-value=0.07 Score=34.02 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
++.+|..++++|+|++|....+.++...|.|..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 678888889999999999999998888888876544
No 262
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.59 E-value=0.12 Score=48.38 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHHhcChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDAL-ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~-a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
.+....|....++++...|.... ...++++++.+-|-.-+|-..+.+++.++-..+. .++.+|.++..+.+.++|+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl---~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL---TFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch---HHHhcchhHHHHhhhHHHH
Confidence 34566778888888888887654 4689999999999999999999999999977777 7899999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l 177 (228)
+.|++++.+.+++|+....|-.+-
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999997766555443
No 263
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.48 Score=39.80 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCH-HHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEV-GDREEAIAEMEDVSISLKGYP-EVHAA 172 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~p-~~~~~ 172 (228)
.|..-+++ ++.++.++|+.++++++++.-+-.. .+.-+..+|.+|..- .++++|+.+|+++-.-...+- ....+
T Consensus 76 ~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 34444554 4566999999999999999766432 111234677777654 899999999999944333331 12111
Q ss_pred ---H-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 173 ---L-AAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 173 ---l-a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+ ..-|..+.++|.+|+..|+++....-++.-..|
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 1 122444457899999999999887666555433
No 264
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.26 Score=46.15 Aligned_cols=111 Identities=19% Similarity=0.037 Sum_probs=83.2
Q ss_pred hcChhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCC
Q 027087 90 SSRVSDALELLE--KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMED-VSISLKGY 166 (228)
Q Consensus 90 ~~~p~~a~a~~~--lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~ 166 (228)
..++.+...+.. +...+...++...+......++..+|++.. +..|++.++...|....+...+.+ +....+.+
T Consensus 59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~ 135 (620)
T COG3914 59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---AVQNLAAALELDGLQFLALADISEIAEWLSPDN 135 (620)
T ss_pred ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch
Confidence 456666554322 577778889999999999999999999999 899999999888887777776666 54455666
Q ss_pred HHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 167 PEVHAAL------AAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 167 p~~~~~l------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+....+ +..+.. .++..++....+++.++.|++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 136 AEFLGHLIRFYQLGRYLKL-LGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHhhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhhhhhh
Confidence 5444433 554444 357899999999999999998764
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.32 Score=41.12 Aligned_cols=108 Identities=17% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HH-HH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--PE-VH 170 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p~-~~ 170 (228)
..|..-++++...++|++|..++.+|++-.-++.. .+.++-..+....++..+.|+...|+++....-.+ |+ +.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 34555677788899999999999999865544432 23455667777778888899999999985443322 21 22
Q ss_pred HHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 171 AAL---AAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 171 ~~l---a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..+ +.++ + ..+.++|++.|++++.+--.....+.
T Consensus 112 maleKAak~l-e-nv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 112 MALEKAAKAL-E-NVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred HHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhccchHHH
Confidence 222 2323 3 34779999999999888766665544
No 266
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.13 Score=43.90 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
.-++=.++.+.++++.|...-++.+.++|+++. -+--+|.+|.++|-+.-|+++++..++..|++|.+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPY---EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 345567788999999999999999999999997 8999999999999999999999998888999886543
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.47 E-value=0.23 Score=44.42 Aligned_cols=122 Identities=19% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCchHHHHHHHH-HHhcChhhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASA-AVSSRVSDALELLEKGRELQA---------IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 76 ~~~~~a~~~~~~-al~~~p~~a~a~~~lG~~~~~---------~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
+..+.|...... ....+..+++.+.-.|.+|-. ....++|+..|.++.+++|+.. .=.|++.++..
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y----~GIN~AtLL~~ 271 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY----SGINAATLLML 271 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc----chHHHHHHHHH
Confidence 335566666666 446677788999999998832 2358899999999999998765 46888888988
Q ss_pred cCCHHHHHHHHHHHHHhc--------CCCH-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 146 VGDREEAIAEMEDVSISL--------KGYP-EVH---AALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~--------~~~p-~~~---~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.|...+....++++...+ ..+. .-+ ..+..+..- .|++++|++++++++++.|..-
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence 888666655555553111 1111 112 223333333 4699999999999999987544
No 268
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.33 Score=44.60 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=53.7
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 87 AAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 87 ~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
+++..|..+.-.|...+..-++.+....|...+++|+.+-|.-.+ .|+..-.+-..+|+...|...|++= ..-.
T Consensus 98 RALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq---lWyKY~ymEE~LgNi~gaRqiferW---~~w~ 171 (677)
T KOG1915|consen 98 RALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ---LWYKYIYMEEMLGNIAGARQIFERW---MEWE 171 (677)
T ss_pred HHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH---HHHHHHHHHHHhcccHHHHHHHHHH---HcCC
Confidence 344444555555555555555555555555555555555555444 4555555555555555555555555 3333
Q ss_pred H--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 167 P--EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 167 p--~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
| +++...-..-.. -+.++.|+..|++-+-.+|+..
T Consensus 172 P~eqaW~sfI~fElR-ykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 172 PDEQAWLSFIKFELR-YKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred CcHHHHHHHHHHHHH-hhHHHHHHHHHHHHheecccHH
Confidence 3 222222221111 1345666666666666666543
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.41 E-value=0.14 Score=47.20 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=71.0
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCC
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHA 183 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~ 183 (228)
...+.+.|.+.++...+..|+..- -.+..|.++...|+.++|++.|++++.....-+ -..+.++.++.. .++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~l---fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~ 320 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSAL---FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHD 320 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-Hch
Confidence 456788999999999999999988 789999999999999999999999842111112 234556666666 459
Q ss_pred HHHHHHHHHHHHhcCCC
Q 027087 184 LLLAENQFTIATLLDPH 200 (228)
Q Consensus 184 ~~~A~~~~~~al~l~P~ 200 (228)
|++|...|.+.++.+..
T Consensus 321 w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999986654
No 270
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.20 E-value=0.19 Score=37.72 Aligned_cols=85 Identities=22% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHHHh----------cCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCC-chhHHH
Q 027087 76 DPLTQAEKDASAAVS----------SRV--SDALELLEKGRELQAIGDFNKALQYFTLVVE-------NYKDF-AFSEYA 135 (228)
Q Consensus 76 ~~~~~a~~~~~~al~----------~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-------l~P~~-~~~~~a 135 (228)
....++...++.+.+ -|. =|+..+-.+..++..+|+|++++..-++++. ++-+. ..|+-+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 335566666666651 122 2456678889999999999999888888774 33332 234557
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
.++++.++...|+.++|++.|+.+.
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8999999999999999999999983
No 271
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.14 Score=39.86 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
+..+++.......=-+.|+.++.-..-|.++...|+|++|+..|+...+-.+..+. +.-.++.|++.+||.+
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~---~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY---GKALLALCLNAKGDAE 95 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH---HHHHHHHHHHhcCChH
Confidence 33444555444444668999999999999999999999999999999888888776 8889999999998865
No 272
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=0.49 Score=43.55 Aligned_cols=119 Identities=16% Similarity=0.005 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
-+.|...+++++.+=|.--..||..-..-..+|+...|.+.|++-++..|+- + +|...-..-.+-++.+.|...|+
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-q---aW~sfI~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-Q---AWLSFIKFELRYKEIERARSIYE 198 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-H---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555666777777766777776666677888888888888888888874 3 67777777777788888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 158 DVSISLKGYPEVHAALAAALYV-DKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~-~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+- .--+|++...+-.+-+. ..|+..-++..|++|++.--++..
T Consensus 199 rf---V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 199 RF---VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HH---heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 88 55556444333333222 246788888888888876655443
No 273
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.91 E-value=0.056 Score=45.09 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
...+.||.+.|.+.|.+++++.|++.. .|+.+|....+.|+++.|.+.|++.++..|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~---gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAA---GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhh---hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456789999999999999999999999 99999999999999999999999996666655
No 274
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.87 E-value=0.037 Score=29.62 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
+.+++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665554
No 275
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.83 E-value=0.046 Score=29.26 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFT 120 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~ 120 (228)
.+++++|.++..+|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467788888888888888888775
No 276
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.77 E-value=0.46 Score=35.03 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhcCCCHHHH
Q 027087 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD----R-------EEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 102 lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~----~-------~~A~~~~~~al~~~~~~p~~~ 170 (228)
++..+++.|++-+|++..+..+..++++...+..+..-|.+++++.. . -.++++|.++....|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45678899999999999999999999887522256667777766432 1 267888888855444444445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+.+|.-+-. ...|+++...-+++|.+
T Consensus 82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 555543222 23466676666666665
No 277
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.51 Score=43.47 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--H-----
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--P----- 167 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p----- 167 (228)
.+..++-+|.-...-+-|+.|+..|..|+++--.-..++....|+|.+|...|+-+.--+.++.+ .|.+ +
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHH
Confidence 45667888998889999999999999998876544444456789999999999998888888887 6653 2
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 168 ---EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 168 ---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+.+..|...+. ++++.||+...++.|+..
T Consensus 443 l~a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 443 LEASILYVYGLFAFK-QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhc
Confidence 345555665666 469999999999999876
No 278
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.67 E-value=0.25 Score=34.16 Aligned_cols=59 Identities=24% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
.....|.-++.+.+.++|+..++++++..++..+-.-++-.+..+|...|+|.+.++..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665541112222334555666666655543
No 279
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.64 E-value=0.34 Score=48.33 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----G---DREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
..++...+.|+.|+..|++...--|+-.+.--|.+..|..+.++ | .+++|+..|++. ...-...+.+||.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL---HGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCCchHHHhH
Confidence 55667777888888888888777776543222667777776652 2 366777777776 3322233444444
Q ss_pred HHH-HhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 176 ALY-VDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 176 ~l~-~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++. +..|+|+|=++.|.-+++..|+.+..-.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 332 2246778888888888888888777544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.63 E-value=0.41 Score=41.18 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
...++..+...+...|+++.++..+++.+.++|-+.. +|..+-.+|++.|+...|+..|+++-
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~---~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP---AYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH---HHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3456778889999999999999999999999999999 99999999999999999999999983
No 281
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.62 E-value=0.28 Score=45.15 Aligned_cols=120 Identities=16% Similarity=0.089 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
..++-+....+++..|.++..-...+.+....|+|+.+.+.+.-+-..--.-.. +...+-..++.+|+.++|....+
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~---~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS---TLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch---HHHHHHHhhhchhhHHHHHHHHH
Confidence 344445555667778888887788899999999999999988666443333333 55566667888999999999888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
-.+-.--.+|+....-+..--. .|-++++..+|++++.++|..
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADA-LQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHH-HhHHHHHHHHHHHHhccCChh
Confidence 8843333456654333322223 457899999999999999853
No 282
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.52 Score=43.47 Aligned_cols=88 Identities=8% Similarity=-0.002 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 114 KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 114 ~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
.=...|++|...-+.+.. .|.+....-.+.+.+.+-...|.+++...|++|+.|..-+.-.+..+.+++.|+..|.+
T Consensus 89 rIv~lyr~at~rf~~D~~---lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVK---LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 345668888888888887 78777666666677999999999999999999999988888788877668999999999
Q ss_pred HHhcCCCCCch
Q 027087 194 ATLLDPHYTDL 204 (228)
Q Consensus 194 al~l~P~~~~~ 204 (228)
+|+.+|+.+..
T Consensus 166 gLR~npdsp~L 176 (568)
T KOG2396|consen 166 GLRFNPDSPKL 176 (568)
T ss_pred HhhcCCCChHH
Confidence 99999998875
No 283
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.53 E-value=1.1 Score=37.04 Aligned_cols=65 Identities=20% Similarity=0.041 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhcCC--Cc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFN-------KALQYFTLVVENYKD--FA-FSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~-------~Ai~~~~~Al~l~P~--~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
+..+..++.+|..+|+.+ .|++.|+++++.... .. +..-..+.+|.+..+.|++++|++.|.+++
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555666677777777744 344444444433322 11 001145667777777777777777777773
No 284
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.49 E-value=0.13 Score=47.29 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=87.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLV-VENYKDFAF-----SEYARVGRALALYEVGDREEAIAEMEDVSIS--- 162 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A-l~l~P~~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--- 162 (228)
.-+.+.+.+...+.++..|+|.+|.+.+... +...|.... .+..|+|+|.+++++|.|.-++..|.++++-
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3366788899999999999999999998765 444454221 1335899999999999999999999999751
Q ss_pred -cCC--------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 163 -LKG--------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 163 -~~~--------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+.. .-+..++.|..+... |+.-+|-+.|.+++...-.++..+.
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHHHH
Confidence 111 117788999988885 5889999999999988766666543
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.44 E-value=2 Score=37.25 Aligned_cols=112 Identities=20% Similarity=0.140 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD----FAFSEYARVGRALALYEVGDREEAIAEMEDVSI-SLKGY 166 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~----~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 166 (228)
.......+...+.+..+.|+++.|...+.++...++. .+. ..+..+..+...|+.++|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~---v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR---VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc---hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 5566778899999999999999999999999886632 345 678889999999999999999999866 11111
Q ss_pred --------------------------H-------HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 167 --------------------------P-------EVHAALAAALYVD-----KHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 167 --------------------------p-------~~~~~la~~l~~~-----~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
. .++..+|...... .+..+++...|+++++++|.....++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 0 2333344433332 26789999999999999998887544
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.39 E-value=1 Score=42.49 Aligned_cols=97 Identities=19% Similarity=-0.020 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC
Q 027087 95 DALELLEKGRELQAIG-----DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG---DREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g-----~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~ 166 (228)
++.+.+.+|.+|.+.. +++.|+..|.++.++. +++ +.+++|.++..-. ++..|.++|..+. ...+
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~G~ 359 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPD---AQYLLGVLYETGTKERDYRRAFEYYSLAA--KAGH 359 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--Cch---HHHHHHHHHHcCCccccHHHHHHHHHHHH--HcCC
Confidence 3446778889888743 7889999999987654 455 8899999998766 5789999999992 3457
Q ss_pred HHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCC
Q 027087 167 PEVHAALAAALYVDK----HALLLAENQFTIATLLDP 199 (228)
Q Consensus 167 p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P 199 (228)
.++.+.++.++.. | .+.+.|..+|+++.+.+.
T Consensus 360 ~~A~~~la~~y~~-G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 360 ILAIYRLALCYEL-GLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred hHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHHHHccC
Confidence 8899999997766 5 578999999999999983
No 287
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.33 E-value=0.19 Score=29.32 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCC
Q 027087 98 ELLEKGRELQAIGDFNKALQY--FTLVVENYKD 128 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~--~~~Al~l~P~ 128 (228)
.++.+|-.+..+|++++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 355566666666666666666 3355555554
No 288
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.98 Score=42.40 Aligned_cols=93 Identities=22% Similarity=0.008 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCCchhHHHHHHH------HHHHHHcCCHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTL-VVENYKDFAFSEYARVGR------ALALYEVGDRE 150 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~-Al~l~P~~~~~~~a~~~l------a~~~~~~g~~~ 150 (228)
...+....+..+..||+++.++.++|.++...|....++..+.. +....|++.+ ....+ +..+..+|+..
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE---FLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH---HHhhHHHHHHHHHHHHHhccHH
Confidence 33455555667799999999999999999988888877777665 8999999987 55555 88888899999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHH
Q 027087 151 EAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~l 173 (228)
++...+++++..+|.+++....+
T Consensus 160 ~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 160 EAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhHhHH
Confidence 99999999988888887554433
No 289
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.25 E-value=0.77 Score=37.91 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=63.3
Q ss_pred HHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhcCC--C----HH
Q 027087 106 LQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGDRE-------EAIAEMEDVSISLKG--Y----PE 168 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~--~----p~ 168 (228)
+.....+++|++.|.-|+-. ..++...++.+..+|++|..+|+.+ .|...|++++..... . ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 44556788888887776533 2333344557899999999999965 555555555332221 1 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 169 VHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 169 ~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
..+.+|.+... .|++++|..+|.+++...-...
T Consensus 167 l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRR-LGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCC
Confidence 45566776666 5689999999999997644433
No 290
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.11 E-value=0.099 Score=30.93 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENY 126 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~ 126 (228)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356667777777777777777777776653
No 291
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.96 E-value=0.3 Score=45.37 Aligned_cols=83 Identities=20% Similarity=0.103 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAI---GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
..++..+.++++.-|.....+.|++.++++. |+.-.|+..-..|++++|.... +++.++.++.+++++.+|+.+
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k---ah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK---AHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH---HHHHHHHHHHHHhhHHHhhhh
Confidence 4456667777888888888999998888764 6778888999999999999999 999999999999999999999
Q ss_pred HHHHHHhcCCCH
Q 027087 156 MEDVSISLKGYP 167 (228)
Q Consensus 156 ~~~al~~~~~~p 167 (228)
...+ .-.+|
T Consensus 468 ~~al---q~~~P 476 (758)
T KOG1310|consen 468 HWAL---QMSFP 476 (758)
T ss_pred HHHH---hhcCc
Confidence 9988 44455
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=0.51 Score=38.42 Aligned_cols=64 Identities=25% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
+.+-.+++.++..+|++|+|+..++... ++++.. ...-.+|.++...|+-++|++.|++++...
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIK--EESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456788999999999999999998753 233221 135678999999999999999999996654
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.86 E-value=3.7 Score=35.04 Aligned_cols=124 Identities=17% Similarity=-0.017 Sum_probs=79.6
Q ss_pred hCCCchHHHHHHHHHH----hcChhh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cC---CCchh----H
Q 027087 74 TYDPLTQAEKDASAAV----SSRVSD----ALELLEKGRELQAIG-DFNKALQYFTLVVEN----YK---DFAFS----E 133 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al----~~~p~~----a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l----~P---~~~~~----~ 133 (228)
+.+..+-|..++.++- ..+|+. +..+|+.|......+ ++++|+..++++.++ .. ..++. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3455566666665542 445655 456899999999999 999999999999888 22 22220 1
Q ss_pred HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 134 YARVGRALALYEVGDREE---AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 134 ~a~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
-.+..++.+|.+.+.++. |...++.+-...++.|......-.++.. .++.+++.+.+.+++.--
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 136678888988888764 4444444533345556555322222333 456788888888888753
No 294
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.84 E-value=0.3 Score=43.52 Aligned_cols=101 Identities=19% Similarity=0.048 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP------ 167 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------ 167 (228)
.+..-+|+++.-++.|+++++.|++|+...-++.+. ...+..+|..+-++.|+++|.-...++..+....-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 345667889999999999999999998886554431 01467889999999999999999888866544221
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 168 ----EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 168 ----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+.+.++.++.. .|+...|.+.-+++-++.
T Consensus 203 kyr~~~lyhmaValR~-~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRL-LGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHH
Confidence 344556666655 457788888888876654
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.72 E-value=3.1 Score=33.58 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=84.0
Q ss_pred CCchHHHHHHHHHHhcChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHHHHcCCHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSD--ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE--YARVGRALALYEVGDREE 151 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~--a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~--~a~~~la~~~~~~g~~~~ 151 (228)
+..+++..-+...-.-...+ ..+.+..|.+....|+-.+|+..|+.+-.-.|- +... -++..-+..+...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHH
Confidence 33444554444444434443 345678899999999999999999998665443 2210 157778889999999999
Q ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 152 AIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 152 A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
-....+.+. .+.+| .+...||.+-+. .|++..|..+|.....
T Consensus 151 V~srvepLa--~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLA--GDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhcc--CCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence 988888761 33455 567788888888 5699999999998876
No 296
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.70 E-value=0.37 Score=40.56 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
|..+|..++.+.|++...|+++|.+....|+.-+|+=.|-|++...--++. |..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~---A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPS---ARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666544433444 56666665555
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.61 E-value=0.73 Score=43.46 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hcCCCchhHHHHHHHHHHHHHcC--
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQA-----IGDFNKALQYFTLVVE-----NYKDFAFSEYARVGRALALYEVG-- 147 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~-----~g~~~~Ai~~~~~Al~-----l~P~~~~~~~a~~~la~~~~~~g-- 147 (228)
.+..+++.+. +-.+..+.+.+|.++.. .+|.+.|+.+|+.+.+ ..-.++. +.+.+|.+|.+..
T Consensus 230 ~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 230 EAFKYYREAA--KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGV 304 (552)
T ss_pred HHHHHHHHHH--hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCC
Confidence 3444444333 34567778888888864 4899999999999977 1122555 7899999999843
Q ss_pred ---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC
Q 027087 148 ---DREEAIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLAENQFTIATLLD 198 (228)
Q Consensus 148 ---~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~ 198 (228)
+++.|+..|.++. .-.+|++.+.+|.++..-. .++..|.++|..|....
T Consensus 305 ~~~d~~~A~~~~~~aA--~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAA--ELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHH--hcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 7888999999992 2356889999999877733 35679999999887653
No 298
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=1.4 Score=40.71 Aligned_cols=118 Identities=15% Similarity=-0.027 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcChh---hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc---CCCchh-HHHHHHHHHHHHHcC-CHHH
Q 027087 81 AEKDASAAVSSRVS---DALELLEKGRELQ-AIGDFNKALQYFTLVVENY---KDFAFS-EYARVGRALALYEVG-DREE 151 (228)
Q Consensus 81 a~~~~~~al~~~p~---~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~---P~~~~~-~~a~~~la~~~~~~g-~~~~ 151 (228)
.+...+..+...|. .+..+..+|.+++ ..++++.|...++++..+. |++.++ -.+.-.++.+|.+.. .+..
T Consensus 28 ~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~ 107 (629)
T KOG2300|consen 28 CIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPP 107 (629)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34444444444443 2455677776665 5788888888888887665 555321 013455677777666 6788
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 152 AIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 152 A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+...+++++......| ...+.++....- ..++..|.+. |..+-.+++
T Consensus 108 ~KalLrkaielsq~~p~wsckllfQLaql~~i-dkD~~sA~el----Lavga~sAd 158 (629)
T KOG2300|consen 108 AKALLRKAIELSQSVPYWSCKLLFQLAQLHII-DKDFPSALEL----LAVGAESAD 158 (629)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh-hccchhHHHH----Hhccccccc
Confidence 8888888877777777 445556665555 4577777774 555544443
No 299
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.31 E-value=1.3 Score=42.18 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-----EVH 170 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-----~~~ 170 (228)
...|..........|-++.-...|++++++.=-.++ ...|.|+.+....-++++.+.|++. ++..+ +.|
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPq---ii~NyAmfLEeh~yfeesFk~YErg---I~LFk~p~v~diW 550 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ---IIINYAMFLEEHKYFEESFKAYERG---ISLFKWPNVYDIW 550 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhhHHHHHHHHHHHcC---CccCCCccHHHHH
Confidence 345666777778889999999999999999988898 8999999999999999999999999 55442 666
Q ss_pred HHHH-HHHHHh-cCCHHHHHHHHHHHHhcCC
Q 027087 171 AALA-AALYVD-KHALLLAENQFTIATLLDP 199 (228)
Q Consensus 171 ~~la-~~l~~~-~~~~~~A~~~~~~al~l~P 199 (228)
...- ...... |...+.|+..|++||+.-|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 5433 222222 4578999999999999876
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.24 E-value=0.56 Score=42.84 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=55.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHH
Q 027087 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP--EVHAALAAALYV 179 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--~~~~~la~~l~~ 179 (228)
+.-++.+|+|.++.-.-.-..+++| ++. ++..+|.+++...+|++|-.++... -+++- +.+...+.+++.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~---~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQ---AYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHH---HHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHH
Confidence 5556789999999999999999999 688 8999999999999999999999987 55432 444444444443
No 301
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.15 E-value=2.3 Score=32.70 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 96 ALELLEKGRELQAI---GDFNKALQYFTLVVE-NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 96 a~a~~~lG~~~~~~---g~~~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
....|+++.++.+. .|..+.|..++..++ -+|+... .| .|-++..+++.|+|+.++.+.+..+...|+++++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR-e~-lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR-EC-LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch-hh-hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 45578888888654 556789999999996 5555443 23 788999999999999999999999888888876644
No 302
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.08 E-value=2.2 Score=42.77 Aligned_cols=121 Identities=21% Similarity=0.149 Sum_probs=88.2
Q ss_pred CchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc
Q 027087 77 PLTQAEKDASAAVSSRVSD---ALELLEKGRELQAI----G---DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV 146 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~----g---~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~ 146 (228)
-.+.|+.++++...--|+- -++.|..|..+..+ | .+++|+..|++.-. .|.-+. -|...|.+|.++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~ 565 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL---EYLGKALVYQRL 565 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch---HHHhHHHHHHHh
Confidence 3677888888777666543 56789999888532 3 58888888888633 466666 689999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAA-------LAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~-------la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|+|+|=+++|.-+++..+++|+.-.. +-.+++. +-..|....--++.+.|.....
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK---HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999843322 2333333 2266667777788888876554
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.07 E-value=4.7 Score=35.29 Aligned_cols=115 Identities=10% Similarity=-0.120 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH---HHHcCCHHHHHHHH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA---LYEVGDREEAIAEM 156 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~---~~~~g~~~~A~~~~ 156 (228)
-.+..+.++++.+|++...+..+=....+..+-++-.+.+++++..+|++.. .|..+-.. .+..-.+++....|
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~---LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE---LWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3455667888999999998888878888888999999999999999999887 44333222 12233567888888
Q ss_pred HHHHHhcCCCH------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 157 EDVSISLKGYP------------------EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 157 ~~al~~~~~~p------------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+++..+..-. .....+...+.+ .|..+.|...|+..++++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHH
Confidence 87766543211 111222333333 578999999999999986
No 304
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.01 E-value=0.66 Score=41.38 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc--hh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC-
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFA--FS-----EYARVGRALALYEVGDREEAIAEMEDVSISLK--GY- 166 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~--~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~- 166 (228)
.++..+|..+.+.+|+++|+.+..+|.++--+.. +| .-+++.++.++..+|+.-+|.++.+++..+.- .|
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 4577889999999999999999999988865432 11 12578899999999999999999999844321 12
Q ss_pred H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 167 P---EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 167 p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
+ ....-++.+|.. .|+.+.|-..|+.|....
T Consensus 243 a~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRS-RGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence 1 233445676766 457788888888886653
No 305
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.64 E-value=5.7 Score=33.67 Aligned_cols=117 Identities=17% Similarity=-0.008 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHhcChhh-HHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----
Q 027087 78 LTQAEKDASAAVSSRVSD-ALELLEKGRELQAI-----G--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE---- 145 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~-a~a~~~lG~~~~~~-----g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~---- 145 (228)
...+...+..+.+..... ..+.+++|..+..- - +...|+..|.++-... +.. +.+++|.+|..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~---a~~~lg~~y~~G~Gv 203 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD---AQLLLGRMYEKGLGV 203 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH---HHHHHHHHHHcCCCC
Confidence 345555556555543333 45578888877654 2 3348999999987766 666 89999988865
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C-------------CHHHHHHHHHHHHhcCCCCC
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK-H-------------ALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~-~-------------~~~~A~~~~~~al~l~P~~~ 202 (228)
..++++|..+|.++.... +....+.++ +++..+ + +...|..+++.+....+...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g--~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG--DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred CcCHHHHHHHHHHHHHCC--CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 348899999999994332 277888888 555533 1 66778888887777655443
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.46 E-value=6.5 Score=33.93 Aligned_cols=130 Identities=15% Similarity=0.011 Sum_probs=88.7
Q ss_pred HhhCCCchHHHHHHHHHHhcC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-C-----------------
Q 027087 72 AATYDPLTQAEKDASAAVSSR----VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD-F----------------- 129 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~----p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~----------------- 129 (228)
+.+.+-.+.|......+...+ ...+...+..+..+...|+..+|+..++..+..... .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 445555666666666555433 125778888999999999999999999998882111 0
Q ss_pred -------------chhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------
Q 027087 130 -------------AFSEYARVGRALALYEV------GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK--------- 181 (228)
Q Consensus 130 -------------~~~~~a~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~--------- 181 (228)
...+.++..+|...... ++.+++++.|++++...+....+++..|..+...-
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 01123456666666667 88899999999997777777777777776544431
Q ss_pred -------CCHHHHHHHHHHHHhcCCCC
Q 027087 182 -------HALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 182 -------~~~~~A~~~~~~al~l~P~~ 201 (228)
.-...|+..|-+++...+++
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 11244788888888888773
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.30 E-value=1.2 Score=36.36 Aligned_cols=55 Identities=15% Similarity=-0.050 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHHcCCHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF----AFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~----~~~~~a~~~la~~~~~~g~~~~A 152 (228)
++++..+.+|..|. ..|.++++..|-+++++...+ ++ .+..++.+++++|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~e---il~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPE---ILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHhcchhhh
Confidence 45666666665444 566667777777776665443 34 566666666666666665
No 308
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.91 E-value=5.1 Score=36.28 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA-IAEMED 158 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A-~~~~~~ 158 (228)
.+..+...+++++|+..-+-..-+..+++.|+..++-..++.+.+.+|.-. ..+..++.+.|+.... ++-.++
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhcCCCcHHHHHHHHHH
Confidence 344455666677777766666667777777777777777777777666522 1222334444443211 111122
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
....-+++.+.....+..-+. +|++..|+..-+.+.+..|...
T Consensus 321 L~slk~nnaes~~~va~aAld-a~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALD-AGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred HHhcCccchHHHHHHHHHHHh-ccchHHHHHHHHHHhhhCchhh
Confidence 211123344555444444444 4455666666666666555443
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.90 E-value=5 Score=35.81 Aligned_cols=109 Identities=11% Similarity=-0.075 Sum_probs=77.5
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCC---------------------chhHHHHHHHH
Q 027087 87 AAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE-----NYKDF---------------------AFSEYARVGRA 140 (228)
Q Consensus 87 ~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l~P~~---------------------~~~~~a~~~la 140 (228)
..++.+|-+.+.+..++.++.++||++.|-+..++|+- ..|.+ ..---+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34588999999999999999999999999999999962 22322 11012456677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 141 LALYEVGDREEAIAEMEDVSISLKG-YP-EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~~~-~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
..+.+.|-+.-|.+..+-.+..+|. || .++..+-. +.-..++|+--++.++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~-~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY-YALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH-HHHhcCCHHHHHHHHHhHhh
Confidence 7888899999999999999888887 88 33333333 22224566666665555433
No 310
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=2.5 Score=35.83 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----- 167 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----- 167 (228)
++-..|.++....++.++...|++|..+. |+-.. .-...+-=..+.-+.++|+..|++++.....+-
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA---maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA---MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 34445566667777888888888877664 33222 233333344556677777777777766554432
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 168 -EVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 168 -~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
+..-..+.++.. ++.+++|-..+.+
T Consensus 150 ~el~gk~sr~lVr-l~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 150 FELYGKCSRVLVR-LEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHhhhHhhh-hHHhhHHHHHHHH
Confidence 222223444444 3456666555544
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.46 E-value=4.1 Score=34.74 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=66.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhc----CCCch-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-------CH-----
Q 027087 106 LQAIGDFNKALQYFTLVVENY----KDFAF-SEYARVGRALALYEVG-DREEAIAEMEDVSISLKG-------YP----- 167 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~----P~~~~-~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-------~p----- 167 (228)
..++||++.|..+|.|+-.+. |+... -+...||.|...+..+ ++++|...++++...+.. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999996655 33211 1235789999999999 999999999999776422 22
Q ss_pred --HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCchh
Q 027087 168 --EVHAALAAALYVDK--HALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 168 --~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
..+..++.++...+ ...++|....+.+-.-.|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23445566665532 233445555555555567766654
No 312
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=1.4 Score=37.71 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=85.9
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 86 SAAVSSRVSDALELLEKGRELQAIGDFN-KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~-~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
...++.+|+|..+|..+-.+....|++. .-++....++..+..+.- +|..+-++...-+.+++=+....+.+..+-
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH---aWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH---AWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh---hhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 3445788999999999989999999888 888888999999988888 899999999999999999999999866655
Q ss_pred CCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCch
Q 027087 165 GYPEVHAALAAALYVDKH-----ALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 165 ~~p~~~~~la~~l~~~~~-----~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+-.++..+-.++....| ..+.=..+....|.+.|++..+
T Consensus 179 ~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSa 223 (318)
T KOG0530|consen 179 RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESA 223 (318)
T ss_pred hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence 554454433221111111 2244455666788899988775
No 313
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.43 E-value=0.77 Score=26.69 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~ 155 (228)
++.+|..++.+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 55556666666666666666
No 314
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=2.3 Score=40.54 Aligned_cols=100 Identities=7% Similarity=0.118 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
.+.|-+.-+++.++|..+++.|...+..-|.+... .....+++.||..+.+.|.|.+.++++-+..|.++--.....
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45666778899999999999999999887764320 125778999999999999999999999555566663333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 175 AALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+....+ .-++|..........-
T Consensus 436 ~~~~~E~-~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAED-KSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhc-chHHHHHHHHHHHhhh
Confidence 3333323 5688888877766653
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.13 E-value=3.1 Score=28.77 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA---AALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la---~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.....|+-++..++.++|+..+++++......++-...+| .++... |+|.+.+++--+-+++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~-Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEW-GKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999998888777666655 456564 5788887766554444
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.01 E-value=0.77 Score=38.59 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 115 Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
|+.+|.+|+.+.|++.. .++.+|.+....|+.=+|+-+|-+++.--..++.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~---p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN---PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH---HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC---cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999 999999999999999999999999965444456788888886665
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.95 E-value=0.92 Score=27.69 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
.+++|.+|.++|+++.|.+.+++++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3567777888888888888887774
No 318
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.81 E-value=1.3 Score=39.11 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcCCHHH
Q 027087 109 IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS--LKGYPEVHAALAAALYVDKHALLL 186 (228)
Q Consensus 109 ~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~p~~~~~la~~l~~~~~~~~~ 186 (228)
.-||..=...|+-...+.|+-. .-.|++.+..+..-.+.++...+.+... +..+--.+...+..+.. .|+.++
T Consensus 309 dtDW~~I~aLYdaL~~~apSPv----V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~e 383 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPSPV----VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEE 383 (415)
T ss_pred CCChHHHHHHHHHHHHhCCCCe----EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHH
Confidence 3466666667777777777754 5789999998888888899888888443 23333456667777777 458899
Q ss_pred HHHHHHHHHhcCCCCCchhhhhh
Q 027087 187 AENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 187 A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|...|++++.+.++..+..|+..
T Consensus 384 Ar~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 384 ARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999998887655
No 319
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=1.1 Score=38.31 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=51.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
.-...+.+.....+.+..+|+++..+-.+|.+|.+.|-+..|+..++..++.-|+.+.
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3355666777777888999999999999999999999999999999999999999987
No 320
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.73 E-value=4.2 Score=37.08 Aligned_cols=91 Identities=13% Similarity=-0.008 Sum_probs=55.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc--------CCCchh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 103 GRELQAIGDFNKALQYFTLVVENY--------KDFAFS-------EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~--------P~~~~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
+...+++|+|..|+.-|..++++- |..+.+ ....-.+..||..+++.+-|+.+..+.+...|.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444555666666666666665552 222221 12244677788888888888888888866666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
-.|...+.++.. .++|.+|-+.+.-+
T Consensus 263 rnHLrqAavfR~-LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRR-LERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 666666666555 34677776655444
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.47 E-value=1.4 Score=43.35 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
.|-..|..+...|+.|.|+..|..|- -|+.+-.++.-+|+.++|....++. .|-.+-+.++..|
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHh
Confidence 34455888889999999999998863 2555555666666666666655544 2333445556655
Q ss_pred HHhcCCHHHHHHHHHHH
Q 027087 178 YVDKHALLLAENQFTIA 194 (228)
Q Consensus 178 ~~~~~~~~~A~~~~~~a 194 (228)
-. .|++.+|...|.+|
T Consensus 978 En-~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 978 EN-DGDVVKAVKFFTRA 993 (1416)
T ss_pred hh-hHHHHHHHHHHHHH
Confidence 44 34666666666654
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.46 E-value=7.4 Score=36.73 Aligned_cols=109 Identities=16% Similarity=0.069 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhcCCCH-
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA---EMEDVSISLKGYP- 167 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~---~~~~al~~~~~~p- 167 (228)
-++.+..+..-+..-...|+++.|...|++..+--|+... +-.....+..++|+.+.+.. .+... .....++
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~---~~l~~~~~e~r~~~~~~~~~~~~l~s~~-~~~~~~~~ 437 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE---VVLRKINWERRKGNLEDANYKNELYSSI-YEGKENNG 437 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh---hHHHHHhHHHHhcchhhhhHHHHHHHHh-cccccCcc
Confidence 3445556666677777899999999999999998899998 77888888999999999883 33333 2222333
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 168 ---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 168 ---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
......+...+...++.+.|...+.+++++.|++...
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 2333445555555678899999999999999998764
No 323
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.14 E-value=8.1 Score=36.32 Aligned_cols=82 Identities=11% Similarity=-0.030 Sum_probs=69.0
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 86 SAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
+.-++.||.|.+.|+.+-.-+..+ .+++....|++.+..-|..+. +|.......+..++|+.-.+.|.+.|-.. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r---~W~~yi~~El~skdfe~VEkLF~RCLvkv-L 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR---AWKLYIERELASKDFESVEKLFSRCLVKV-L 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence 567889999999999997766555 999999999999999999999 89999999999999999999999994432 2
Q ss_pred CHHHHHH
Q 027087 166 YPEVHAA 172 (228)
Q Consensus 166 ~p~~~~~ 172 (228)
+-+.|..
T Consensus 85 nlDLW~l 91 (656)
T KOG1914|consen 85 NLDLWKL 91 (656)
T ss_pred hHhHHHH
Confidence 3455543
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.73 E-value=0.87 Score=39.83 Aligned_cols=83 Identities=10% Similarity=-0.015 Sum_probs=69.4
Q ss_pred HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG-RALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
.-..-|+|+..|.....-..+.|-|.+--..|.+++..+|.+.+ .|.- -+.-+...++++.+...+.++++..+.+
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---LWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---eeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 33556888888888888778889999999999999999999998 6655 5667788899999999999999999999
Q ss_pred HHHHHHH
Q 027087 167 PEVHAAL 173 (228)
Q Consensus 167 p~~~~~l 173 (228)
|..|+..
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 9666543
No 325
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=5.1 Score=37.39 Aligned_cols=62 Identities=29% Similarity=0.343 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAFSEYARVGRALALYEVGD-REEAIAEMEDV 159 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~~~~a 159 (228)
.++-+|.++.++|+...|..+|..+++. .-+..-+++|+|.+|..+..+|. ..++.+.+.+|
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA 517 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 4567788888888888888888877632 22223345688888888888888 88888888888
No 326
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=15 Score=31.52 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH-HHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQ-AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE-EAIA 154 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~-~A~~ 154 (228)
...-|......++.++|.+.-+|.-+=.++. ...+..+-++.++++++-+|.+.+ .|..+-.+....|+.. .=++
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---vWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---VWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---HHHHHHHHHHHhcCcccchHH
Confidence 3455666667788999999888766656655 456788889999999999999999 8999999999999988 8888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
..+.++....++=.++..+--++..-+ .++.=..+-.+.|+.|-.+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~-~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFK-DYEDELAYADELLEEDIRN 180 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHhhhc
Confidence 888986655555566666666665544 5788888888888876543
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.16 E-value=12 Score=33.47 Aligned_cols=104 Identities=17% Similarity=0.067 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-----LKGYPEVH 170 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~p~~~ 170 (228)
.+.+.....+.++|-+.-|.+..+-.+.+||+ |+- .+++.+-..-.+.++|+=-+..++..... ...-|+..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence 45677788899999999999999999999999 665 35666666777889998888888776331 11235667
Q ss_pred HHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCC
Q 027087 171 AALAAALYVDKHA--------------LLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 171 ~~la~~l~~~~~~--------------~~~A~~~~~~al~l~P~~~ 202 (228)
+..+.+++..++. .++|...+.+|+...|...
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 7777777775533 2799999999998877543
No 328
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.79 E-value=0.79 Score=40.08 Aligned_cols=85 Identities=5% Similarity=-0.126 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 118 YFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 118 ~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.|.++-..-|+++. .|...+.--.+.|-|.+--..|.+++.+.|.+.+.|..-+..-+...++++.++..|.++|++
T Consensus 95 ~~~R~tnkff~D~k---~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 95 ELYRSTNKFFNDPK---IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred eeehhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 45566666788888 787777777778889999999999999999999888765554445567999999999999999
Q ss_pred CCCCCchh
Q 027087 198 DPHYTDLS 205 (228)
Q Consensus 198 ~P~~~~~~ 205 (228)
+|+.+..+
T Consensus 172 N~~~p~iw 179 (435)
T COG5191 172 NSRSPRIW 179 (435)
T ss_pred CCCCchHH
Confidence 99998853
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.77 E-value=1.1 Score=27.41 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
.++++.+|...||++.|...++++++ ..++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 47899999999999999999999995 44443
No 330
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.74 E-value=4.5 Score=28.50 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
...+..+++.++...|++++|+..+++++++.....+
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 3567889999999999999999999999998766544
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.31 E-value=1.7 Score=25.66 Aligned_cols=27 Identities=19% Similarity=-0.037 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.+..+|.+-...++|++|+..|++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777777777777777777777744
No 332
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.00 E-value=18 Score=34.90 Aligned_cols=127 Identities=13% Similarity=-0.096 Sum_probs=91.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----------------
Q 027087 72 AATYDPLTQAEKDASAAVSSRVS----DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---------------- 131 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~----~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---------------- 131 (228)
....+..+.+...+.++...+.. -+.+|.+.|..-.+..+++.|+...++|... |..+.
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHH
Confidence 44455666666666666655443 3677888888888889999999988888654 33211
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 132 SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 132 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
....|..++......|-++.-...|++++.+--..|....+.+..+-. ..-++++-+.|++-+.+-+-
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKW 543 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCC
Confidence 012456667777778888888899999866555678888888887766 56889999999999988753
No 333
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.64 E-value=2.5 Score=32.57 Aligned_cols=51 Identities=29% Similarity=0.249 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
..+.....+......|+|.-|....+.++..+|++.. +...++.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~---ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE---ARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHHH
Confidence 3456778888889999999999999999999999999 88888888766543
No 334
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=25 Score=31.90 Aligned_cols=127 Identities=6% Similarity=-0.185 Sum_probs=86.8
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQ------------AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA 142 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~------------~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~ 142 (228)
...++.....-.+.+..+|+..-+|+-+=.++. ++.-.++-+.....++..+|+... +|+.+..+
T Consensus 42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~---aW~hR~w~ 118 (421)
T KOG0529|consen 42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG---AWHHRKWV 118 (421)
T ss_pred cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH---HHHHHHHH
Confidence 355666777777778888887777654433332 223567778888999999999999 99999999
Q ss_pred HHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCch
Q 027087 143 LYEVGD--REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA---LLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 143 ~~~~g~--~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~---~~~A~~~~~~al~l~P~~~~~ 204 (228)
+.+.+. +..=++..++++..++.+-.++.++-.+.-..... ..+=+++-+++|.-++.+-.+
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa 185 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA 185 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH
Confidence 998765 47888899999777776656665554433332211 344466667777776655444
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.07 E-value=10 Score=37.45 Aligned_cols=101 Identities=18% Similarity=0.052 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKD---------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP--- 167 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--- 167 (228)
...+.......++++|.....++...-|. ... .....|.+....|+.++|++..+.++..++.+.
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae---~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAE---FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 34466677889999999999888666554 112 355678888999999999999999988877653
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 168 --EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
-+...++.+..- .|++++|....+.+.++.-.+...
T Consensus 496 r~~~~sv~~~a~~~-~G~~~~Al~~~~~a~~~a~~~~~~ 533 (894)
T COG2909 496 RIVALSVLGEAAHI-RGELTQALALMQQAEQMARQHDVY 533 (894)
T ss_pred hhhhhhhhhHHHHH-hchHHHHHHHHHHHHHHHHHcccH
Confidence 344455665555 468999999999888886555543
No 336
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.91 E-value=19 Score=32.06 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------------C---------CchhHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYK--------------D---------FAFSEY 134 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--------------~---------~~~~~~ 134 (228)
..+-+..+..++++||+-+.+|..++.- ..--..+|+..|++|++..- . +.. .|
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl-~Y 276 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL-VY 276 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh-hH
Confidence 3445566677889999998888776432 22334455666665554311 1 111 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYP--EVHAALAAALYV 179 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p--~~~~~la~~l~~ 179 (228)
.-..+++|-.++|+..+|++.++...+..|... +++.++-.++.+
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE 323 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLE 323 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999999955444322 455555544444
No 337
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.43 E-value=3.9 Score=37.06 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKD---------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
..+-.++.-.|||..|++.++-. +++.. +.. .+|..|.+|..++||.+|++.|..++.-+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is---~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHIS---TYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchhee---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778899999999998764 22222 333 57899999999999999999999995533
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.17 E-value=7.1 Score=31.10 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
++..+|.-|.+.|++++|++.|.++ +..-..+ +....+-.+.+.. +++.....+..++-.+-..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999998 3333344 4444444555553 5889999998888776544
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.07 E-value=5.6 Score=34.29 Aligned_cols=62 Identities=18% Similarity=0.010 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
++..++..+...|+++.++..+++.+...|.+-..+..+-.+++. .|+...|+..|++.-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 567788889999999999999999977767666777777777777 56779999999987663
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.57 E-value=8.7 Score=32.15 Aligned_cols=60 Identities=22% Similarity=0.077 Sum_probs=50.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
.++-+..++++.....-++.+|.++.....+=.++.-.|+|++|...++-+-.++|++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 445566788888888888999999988888888899999999999999999999998765
No 341
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.13 E-value=2.9 Score=28.61 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
..+..++.-+-+.|++++|+.+|++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334445555555566555555555544
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.11 E-value=26 Score=33.44 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc--CCCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HH
Q 027087 95 DALELLEKGRELQ-AIGDFNKALQYFTLVVENY--KDFAFS-EYARVGRALALYEVGDREEAIAEMEDVSISLKGYP-EV 169 (228)
Q Consensus 95 ~a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~--P~~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-~~ 169 (228)
++.+++.+|.++. ...++++|+.+++|++.+. +++.+. -.+.+.++.++.+.|... |+..+++.+......+ ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5788999999998 7999999999999998887 444431 113456678888888877 9999999977766633 11
Q ss_pred H---HHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 170 H---AALA-AALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 170 ~---~~la-~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
+ +.+- ..+....+++..|.+.++....+.
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 1 2222 212222258899999999888876
No 343
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.93 E-value=27 Score=31.69 Aligned_cols=127 Identities=13% Similarity=-0.015 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC----HHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGD--FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD----REE 151 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~--~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~----~~~ 151 (228)
.+..+.+...++..+|+..-+|+.+-.++.+.+. +..-++..+++++.||.+.. +|.-+=.+..+... ..+
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh---~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH---AWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc---chHHHHHHHHHHhcccccchh
Confidence 3444556667889999999999999999987654 68889999999999998877 66555554444322 456
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----C------CHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDK-----H------ALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~-----~------~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
=+....+++.....|-.+|.++..++-.+- | -...-.+.-..|+-.||++....+.
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 677777774443333366666666554221 2 1223344445667789998887554
No 344
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.78 E-value=3.1 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRA 140 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la 140 (228)
|+++.+...|++++...|.+.. .|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~---~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE---LWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH---HHHHHH
Confidence 4566667777777777676665 454443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.60 E-value=4.8 Score=34.99 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=29.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 103 GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+..+...|.+.+|+..-++++.++|-+.. .+..+-.++..+||--.+++.|++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~---~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQ---DNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhH---HHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444555555555555555555555555 4555555555555555555555554
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.15 E-value=3.7 Score=27.15 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
..+.+.|.-.-+.|++++|+..|.+++
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555555555666666666665554
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.99 E-value=4.5 Score=34.94 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=46.6
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSE-YARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
+..+.++|+..|++++++.+.-.+|+ .|+-.+-.+.+++|+|++-+..|++.+.-+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI 95 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI 95 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 44689999999999999999887754 355667778999999999999999986543
No 348
>PF12854 PPR_1: PPR repeat
Probab=81.92 E-value=3.1 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMED 158 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~ 158 (228)
.|..+-..|.+.|+.++|.+.|++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 466677777777777777777765
No 349
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=1.8 Score=38.30 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
+.+++.+-.+.+++..|+..-..+++.+++... +++.++..+....++++|++.++.+....|.+...
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk---a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTK---AHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCc---HHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 455666677777777777777777777777777 77888888888888888888888776555655543
No 350
>PF12854 PPR_1: PPR repeat
Probab=81.34 E-value=4.1 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTL 121 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~ 121 (228)
|...|..+-..+.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455678888999999999999999976
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.68 E-value=3.9 Score=37.07 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKG---------YPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+...+..++.-+|||..|++.++.+ ...+. +...++..|.++.++ ++|.+|++.|...|..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMl-rRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLML-RRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4455667888899999999999887 22211 114567788888885 5999999999988753
No 352
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=79.79 E-value=11 Score=35.48 Aligned_cols=73 Identities=7% Similarity=-0.078 Sum_probs=58.9
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 120 TLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 120 ~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
++-++.+|.+.+ +|+.+-.-+..+ -+++..+.|++.+...|..|.+|.......+. .++|+.-+..|.++|..
T Consensus 10 ~~rie~nP~di~---sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDID---SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHH---HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 677889999999 888886655444 89999999999988888888777766665555 35899999999998864
No 353
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.73 E-value=6.7 Score=20.76 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
|+.+.+...|++++...+.+++.+..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566677777777666666666655443
No 354
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.58 E-value=8.5 Score=28.41 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhcCCCCCchh
Q 027087 139 RALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALAAALYVDKH----------ALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~----------~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
++.-+++.|++-+|++..++.+.....+. -.+...|.+++.+.. -.-.+.+.|.++..+.|+.+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999977777664 456667777766541 23457888999999999886655
Q ss_pred h
Q 027087 206 Y 206 (228)
Q Consensus 206 ~ 206 (228)
+
T Consensus 82 ~ 82 (111)
T PF04781_consen 82 F 82 (111)
T ss_pred H
Confidence 5
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.42 E-value=32 Score=27.89 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH----HHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH----AALA 174 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~----~~la 174 (228)
|.-+.-+.+.++.++|+..|...-.-.-. ++. -+.+..|.++.+.|+..+|+..|.++ .....-|... ...+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~Ypv--LA~mr~at~~a~kgdta~AV~aFdei-a~dt~~P~~~rd~ARlra 138 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPV--LARMRAATLLAQKGDTAAAVAAFDEI-AADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhhcccHHHHHHHHHHH-hccCCCcchhhHHHHHHH
Confidence 45556677889999999999887655433 332 26889999999999999999999999 3333334333 2233
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 027087 175 AALYVDKHALLLAENQFT 192 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~ 192 (228)
..+....|.|++-....+
T Consensus 139 a~lLvD~gsy~dV~srve 156 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred HHHHhccccHHHHHHHhh
Confidence 334444567777655433
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.28 E-value=27 Score=29.34 Aligned_cols=61 Identities=20% Similarity=0.026 Sum_probs=53.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 104 RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 104 ~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
..+.+.+..++||...+.-++-+|.+.. .+..+-..|.-.|++++|...++-+-+..|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~---~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAG---GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCcccc---chhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3467789999999999999999999999 899999999999999999999999877677663
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.07 E-value=51 Score=31.31 Aligned_cols=107 Identities=13% Similarity=-0.013 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-KGYPEVHAA 172 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~p~~~~~ 172 (228)
.+-..|...-..-...|+++...-.|++++---..+.. .|.+.+.-....|+.+-|...+..+.+.. +..|..+..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e---fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE---FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH---HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 33344444445556778888888888888777777777 68888877777788887777776664433 233555554
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
-+.+ ....|+++.|+..+++..+--|+..+.
T Consensus 372 ~a~f-~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 372 EARF-EESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHH-HHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 4443 333567888888888887777776654
No 358
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=9.8 Score=36.54 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+.|-|.-+++..+|..+++.|...++-++.|- ....++..||.... +.|.|.+++++|-+.+|...-..+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-QLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhccccHHHHH
Confidence 467788889999999999999999988888764 34556777777754 789999999999999998775433
No 359
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=77.25 E-value=13 Score=26.89 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
+.+......|.+....||++.|++...++-+..++... .+..-+.+-..+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l---~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLL---NYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCC
Confidence 34455678889899999999999999998666444433 44444555555554
No 360
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.92 E-value=13 Score=36.26 Aligned_cols=106 Identities=11% Similarity=0.127 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
-.++.++|..+..+.+|++|.++|.+.- -.-++..+|+...+|++-....+. +|.+.+.+-.++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~-----------~~e~~~ecly~le~f~~LE~la~~----Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG-----------DTENQIECLYRLELFGELEVLART----LPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------chHhHHHHHHHHHhhhhHHHHHHh----cCcccchHHHHHH
Confidence 4678899999999999999999998741 245677888888888876555444 6777766666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHH
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSS 220 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~ 220 (228)
++... |--++|.+.|-+.- .|+ .-..-..++.+|.+++..+
T Consensus 861 mf~sv-GMC~qAV~a~Lr~s--~pk-aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 861 MFTSV-GMCDQAVEAYLRRS--LPK-AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHhh-chHHHHHHHHHhcc--CcH-HHHHHHHHHHHHHHHHHHH
Confidence 66663 46677777664321 121 1123456667776654443
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.36 E-value=8.4 Score=30.79 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 112 FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 112 ~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
.+..++..++.+...|+ +. .+.+++.++...|+.++|....+++....|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~---~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PN---VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445556666666675 33 577778888888888888888888744433
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.65 E-value=46 Score=31.78 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhcCCCchhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHh
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFT--------LVVENYKDFAFSEYARVGRALALYEVGDREE----AIAEMEDVSIS 162 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~--------~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~----A~~~~~~al~~ 162 (228)
.+..+|-.|..+...|+.+.|+..|. .+....+...-..++..|+..++...+.-.+ ....++++
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i--- 479 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQI--- 479 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc---
Confidence 46778999999999999999999998 5555566665556678899999987776444 55555555
Q ss_pred cC---CCHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcC
Q 027087 163 LK---GYPEVHAALAAALYVD------KHALLLAENQFTIATLLD 198 (228)
Q Consensus 163 ~~---~~p~~~~~la~~l~~~------~~~~~~A~~~~~~al~l~ 198 (228)
.| ..+...+..+..++.. .-.+.++...+..+++..
T Consensus 480 ~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 480 EPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMA 524 (608)
T ss_pred CccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Confidence 34 2333333333322211 123457888888888766
No 363
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.54 E-value=7.9 Score=26.49 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+...+.-.-+.|+|++|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555566666666666666654
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.02 E-value=6.8 Score=38.78 Aligned_cols=56 Identities=18% Similarity=-0.016 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
++-||.+..++.-+|+.++|-+.-++ ..+.. |-|.+|..|...|++.+|+..|.++
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~A---AcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEE-----SGDKA---ACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHh-----cccHH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34456666666778888888665544 44555 7788888888888888888888776
No 365
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=2.9 Score=37.08 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
+++.++....++|.+|..+....++++|++.+..+....|++..
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 44578888999999999999999999999999999999999986
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=45 Score=30.48 Aligned_cols=119 Identities=8% Similarity=-0.090 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENY---KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--- 166 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~---P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 166 (228)
-=.+..||-+..++...|+...=...+..-+... -+....+-..+.+=..|...+.|+.|.....+.. .|..
T Consensus 166 ~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn 243 (493)
T KOG2581|consen 166 LIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN 243 (493)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc
Confidence 3346678888888999999776666655544332 2222111122334445666788999988888771 1211
Q ss_pred -HHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCC
Q 027087 167 -PEV--HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWP 214 (228)
Q Consensus 167 -p~~--~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~ 214 (228)
-.+ .+++|.+-.- +.+|..|.++|-.|+...|+..-.-|.....+|-
T Consensus 244 ne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ 293 (493)
T KOG2581|consen 244 NEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHAALGFRQQVNKLM 293 (493)
T ss_pred HHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHH
Confidence 123 3456665555 4699999999999999999977777777766664
No 367
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.24 E-value=11 Score=36.75 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYE--VGDREEAIAEMEDVSISLKGYPEVHAALAA 175 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~p~~~~~la~ 175 (228)
...-|+.+++.+++.++...|..++.+-|. +..+.+.+.|.+.++.+ .|+|.+++...+-++...|..-.+..-.+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 345578889999999999999999998883 33334456777777766 578889998888884444444455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 176 ALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+|... +.++-|.+...-....+|....+.+
T Consensus 136 ~y~al-~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 136 KYEAL-NKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHH-HHHHHHHHHHHHHhcCCCCcchHHH
Confidence 66664 4678888888888888998876655
No 368
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.08 E-value=9.1 Score=26.19 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+...|.-.-..|+|++|+.+|.+++
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555555666666666665554
No 369
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=73.00 E-value=86 Score=29.67 Aligned_cols=124 Identities=12% Similarity=-0.027 Sum_probs=77.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALEL-LEKGRELQAIGDFNKALQYFTLVV-ENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~-~~lG~~~~~~g~~~~Ai~~~~~Al-~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
.++.++...+..+..++-+-.+++...| ..-..++.+.|+.+.|-..+.+.- ++.|.... ..-...+.+.....++
T Consensus 38 ~lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~--~~~LL~ael~la~~q~ 115 (604)
T COG3107 38 LLQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRA--EKSLLAAELALAQKQP 115 (604)
T ss_pred hccCCcchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhccCh
Confidence 4455666666665555554444443333 344678889999999999999875 44443221 2345567778888999
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 150 EEAIAEMEDVSISLKGY----PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
..|...+.+. .+.+ -.+++..+.+-.... + ..++...+.-+..+|--.
T Consensus 116 ~~Al~~L~~~---~~~~ls~~Qq~Ry~q~~a~a~ea-~-~~~~~a~rari~~~~lL~ 167 (604)
T COG3107 116 AAALQQLAKL---LPADLSQNQQARYYQARADALEA-R-GDSIDAARARIAQDPLLS 167 (604)
T ss_pred HHHHHHHhhc---chhhcCHHHHHHHHHHHHHHHhc-c-cchHHHHHHHHHhhhhcc
Confidence 9999999988 4433 255666655544432 2 445555556666666433
No 370
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.97 E-value=42 Score=30.89 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.-++...|-.+|.....+|+++-|+.+|+++ . -+-.+..+|.-.|+.+.=.+..+.+
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~---d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKA--------K---DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T----HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------c---CccccHHHHHHhCCHHHHHHHHHHH
Confidence 3446667888888888888888888888874 1 2555666777778776666655555
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.16 E-value=57 Score=27.24 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCC
Q 027087 113 NKALQYFTLVVENYKDF---AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHA 183 (228)
Q Consensus 113 ~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~ 183 (228)
...|+.+++|++.-... -...+....+|..|+..|++++|++.|+.+......+. +....+..|.+.. |+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~-~~ 233 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL-GD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh-CC
Confidence 34455555555443322 22234567899999999999999999999954444332 4455556666664 35
Q ss_pred HHHHHHH
Q 027087 184 LLLAENQ 190 (228)
Q Consensus 184 ~~~A~~~ 190 (228)
.+..+..
T Consensus 234 ~~~~l~~ 240 (247)
T PF11817_consen 234 VEDYLTT 240 (247)
T ss_pred HHHHHHH
Confidence 5555443
No 372
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.15 E-value=6.5 Score=27.16 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
...+.|+.+-+.|+.++|+.+|+++++.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3444555555556666666666666444
No 373
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=71.33 E-value=6.2 Score=36.05 Aligned_cols=57 Identities=9% Similarity=-0.073 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
-.+..+|.++++.+.|+..--+.|.++|.+.. -+...|.|...+.+|.+|.+.+.-+
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~fr---nHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFR---NHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998 8999999999999999998776655
No 374
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.12 E-value=31 Score=32.35 Aligned_cols=69 Identities=17% Similarity=0.016 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSI---SLKGY----PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
-++.+|.++..+|+.+.|..+|...+. ....+ |-+++-+|..++.++|-..++++++.+|-+-.-+|.-
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 367899999999999999999999862 22333 5889999999999887689999999999988766553
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.73 E-value=22 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD 128 (228)
Q Consensus 88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~ 128 (228)
.+...| ++..+.+++.++...|+.++|....+++..+.|.
T Consensus 137 ~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 137 LLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 334344 6677888999999999999999999999999994
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.70 E-value=36 Score=30.34 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
+.+-.|++.+..+..-.+.++...+...+. -.++.. .+..+|..+.++|+.++|.+.|++++..-.+.++..+.
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~---~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHL---YHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccc---cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 344467888888888888888888776553 123333 58889999999999999999999997665555555443
No 377
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=69.42 E-value=13 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+...|...-..|++++|+..|.+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554
No 378
>PF13041 PPR_2: PPR repeat family
Probab=69.24 E-value=14 Score=22.30 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
|..+-..+.+.|++++|.+.|++.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444444445555555555544
No 379
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.20 E-value=64 Score=28.90 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---c---------------------------CCCchhHHHHHHHHHHHHHcCCH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVEN---Y---------------------------KDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l---~---------------------------P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
.+.|.++...|+|.+....++.+-.. + |...+-....+-+|+-|.+.+|+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 45588888888888777666554321 1 11111112244567778888999
Q ss_pred HHHHHHHHHH
Q 027087 150 EEAIAEMEDV 159 (228)
Q Consensus 150 ~~A~~~~~~a 159 (228)
+.|.-.++++
T Consensus 142 ~~ArVEfnRa 151 (449)
T COG3014 142 AKARVEFNRA 151 (449)
T ss_pred hhhHHHHHHH
Confidence 9999999888
No 380
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.53 E-value=9.3 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 027087 139 RALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~a 159 (228)
+-..|.+.|++++|.+.|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444445555555544444
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.37 E-value=60 Score=26.62 Aligned_cols=31 Identities=19% Similarity=-0.012 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 167 PEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 167 p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|+..+.+|..|.. .+.++++..+-++|++..
T Consensus 141 ~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 141 AELQYALATYYTK--RDPEKTIQLLLRALELSN 171 (203)
T ss_pred HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcC
Confidence 4444444443332 234555555555555543
No 382
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.34 E-value=15 Score=36.03 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHcC-CHHHHHHHHHH---------HH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGR-ALALYEVG-DREEAIAEMED---------VS 160 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~l-a~~~~~~g-~~~~A~~~~~~---------al 160 (228)
...-..++..++..+...|++++|-+.|-.+++++.-+..||.+.-.+ -.-..+.| +.++|...|-+ +.
T Consensus 991 k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aerva 1070 (1636)
T KOG3616|consen 991 KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVA 1070 (1636)
T ss_pred hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHH
Confidence 334456788889999999999999999999999998877654321111 11223344 45555554422 10
Q ss_pred Hh-cCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhH
Q 027087 161 IS-LKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSL 217 (228)
Q Consensus 161 ~~-~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~ 217 (228)
.. .+.. |+++...+.--.. .|++..|+..+-++ ..|+-.--+|++. .-|+.++
T Consensus 1071 e~h~~~~l~dv~tgqar~aie-e~d~~kae~fllra--nkp~i~l~yf~e~-~lw~dal 1125 (1636)
T KOG3616|consen 1071 EAHCEDLLADVLTGQARGAIE-EGDFLKAEGFLLRA--NKPDIALNYFIEA-ELWPDAL 1125 (1636)
T ss_pred HhhChhhhHHHHhhhhhcccc-ccchhhhhhheeec--CCCchHHHHHHHh-ccChHHH
Confidence 00 1111 2444444433333 24677777655333 2244444455444 7888755
No 383
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.32 E-value=14 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+...|.-.-..|+|++|+..|.+++
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554
No 384
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=67.99 E-value=15 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 027087 112 FNKALQYFTLVVE 124 (228)
Q Consensus 112 ~~~Ai~~~~~Al~ 124 (228)
+++|+..|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.00 E-value=30 Score=28.95 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
...+.+|..|+..|+|++|++.|+.+....-...- .......+-.|....|+.++.+...-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44578899999999999999999999655433211 0124667778888899998887766554
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.43 E-value=65 Score=30.29 Aligned_cols=89 Identities=16% Similarity=0.011 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALL 185 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~ 185 (228)
....||.-.|-.-...++...|.++. -...++.+...+|+|+.+...+..+-..+........-+-..++.. ++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l-~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL-ARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch-hhHH
Confidence 35679999999999999999999998 7788899999999999999988877333443333333333334453 4778
Q ss_pred HHHHHHHHHHhcC
Q 027087 186 LAENQFTIATLLD 198 (228)
Q Consensus 186 ~A~~~~~~al~l~ 198 (228)
+|...-+-.|.-.
T Consensus 375 ~a~s~a~~~l~~e 387 (831)
T PRK15180 375 EALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHHhccc
Confidence 8877666666543
No 387
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=66.34 E-value=17 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+...|.-.-..|++++|+..|..++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555554
No 388
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.24 E-value=15 Score=25.15 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 027087 146 VGDREEAIAEMEDVSI 161 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~ 161 (228)
.|+|++|+..|..++.
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3555555555555533
No 389
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.53 E-value=95 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--EYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
+...|-++.++|++.+|...|.++..-.-+.+.. .-.+.++-.--+-+++.+.-...+...-+..+..+-...-.+..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4566889999999999999999987765554320 00333444444556777766665555544467666555556666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 027087 177 LYVDKHALLLAENQFTIA 194 (228)
Q Consensus 177 l~~~~~~~~~A~~~~~~a 194 (228)
.|. .+.|.+|.+.+..=
T Consensus 89 ~Y~-~k~~~kal~~ls~w 105 (549)
T PF07079_consen 89 AYK-QKEYRKALQALSVW 105 (549)
T ss_pred HHH-hhhHHHHHHHHHHH
Confidence 667 45788888866433
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.51 E-value=14 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+..+|.-+-..|++++|+.+|++++.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566666677788877777777743
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=65.08 E-value=23 Score=36.60 Aligned_cols=108 Identities=13% Similarity=-0.029 Sum_probs=81.3
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY--------KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~--------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.+.|+.+..+..++.++.+.|++++|+..-.++.-+. |+... .+.|++...+..++...|...+.++..
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~---~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL---AYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH---HhhHHHHHHHhccCccchhhhHHHHHH
Confidence 6678888899999999999999999999887775432 44445 789999999999999999999998855
Q ss_pred hc-----CCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 162 SL-----KGYP---EVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 162 ~~-----~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.. +.+| ..-.+++.++... ++++.|+...+.|++++-+.
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v-~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGV-EEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhH-HHHHHHHHHHHHHHHHHhhh
Confidence 43 2234 2234566655553 47899999999999865443
No 392
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.83 E-value=39 Score=25.95 Aligned_cols=47 Identities=21% Similarity=0.098 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK 181 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~ 181 (228)
.....+...+..|++.-|....+.++...|.|.+++..++.++..++
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 56777777888999999999999999999999999888888877765
No 393
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.24 E-value=20 Score=18.99 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=10.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 027087 104 RELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 104 ~~~~~~g~~~~Ai~~~~~Al 123 (228)
..+.+.|++++|++.|++..
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555443
No 394
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.89 E-value=17 Score=19.90 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHH
Q 027087 111 DFNKALQYFTLVV 123 (228)
Q Consensus 111 ~~~~Ai~~~~~Al 123 (228)
|.++|+..|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555543
No 395
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.34 E-value=23 Score=23.21 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
...+.|.-.-+.|++++|+..|.+++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356667777778999999999988844
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.29 E-value=23 Score=32.56 Aligned_cols=25 Identities=12% Similarity=-0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
-|-.+|..-..+|+++-|+++|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5777777777777777777777776
No 397
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.83 E-value=1.7e+02 Score=32.68 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY----- 166 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 166 (228)
+..-++.|++.+.+....|.++-|-.+.-.|.+.. -+. +...+|..+-..|+-..|+..+++.+...-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~---i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPE---IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cch---HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 34457889999999999999999999999988777 355 78999999999999999999999997554433
Q ss_pred ---HHHHHH---------HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 167 ---PEVHAA---------LAAALYVDK-HALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 167 ---p~~~~~---------la~~l~~~~-~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
|...+. ++...-..+ -.-++-++.|+.+.+++|...+-+|.
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 211111 111111111 12356688999999999977766554
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.08 E-value=54 Score=28.71 Aligned_cols=56 Identities=20% Similarity=0.030 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 138 ~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
..+..|.+.|.+.+|+...++++...|.+...+..+-..+..+| +--+++.+|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~g-D~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLG-DEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc-cchhhhhHHHHH
Confidence 34567888999999999999997777777777777777777765 446777777654
No 399
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.80 E-value=37 Score=35.17 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
.|+....+.++....+..++...|+..+.++..+. |+.+...-...|++.++...++++.|++.++.|+..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46778889999998899999999999999998763 444443336789999999999999999999999653
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.06 E-value=1.1e+02 Score=28.01 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.++-.+|.-|..-|+++.|++.|-++-..--+-..+...+.|.-.+-..+|+|-.-.....++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 457788999999999999999999977666665555557788888888889988777777666
No 401
>PF13041 PPR_2: PPR repeat family
Probab=58.75 E-value=23 Score=21.29 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+..+-..+.. .|++++|.+.|++..+.
T Consensus 6 yn~li~~~~~-~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCK-AGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 3334444555 45777777777777654
No 402
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.00 E-value=33 Score=32.95 Aligned_cols=24 Identities=13% Similarity=-0.119 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
|-.+|.+....|++..|.+++.++
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh
Confidence 444455555555555555555544
No 403
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=57.60 E-value=28 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=8.6
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 027087 103 GRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~A 122 (228)
|.-.-..|+|++|+..|..+
T Consensus 13 Av~~D~~g~y~eA~~lY~~a 32 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSA 32 (75)
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 33333444444444444444
No 404
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.13 E-value=71 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
.....|.+-+..||+++|.+.+.++ ....++|...+
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a-~~~~~~~~l~~ 96 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKA-AKLSDNPLLNY 96 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHHHHH
Confidence 3456677888899999999999999 44455564433
No 405
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=56.86 E-value=40 Score=20.32 Aligned_cols=33 Identities=24% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 117 QYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 117 ~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
..|.++|--+|++.. .+.-++.-+.+.|+.+.|
T Consensus 3 ~all~AI~~~P~ddt---~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDT---PRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcc---hHHHHHHHHHHcCCHHHH
Confidence 356677788888888 888888888888887554
No 406
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.76 E-value=70 Score=30.56 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
....+.-+......+...+..+..+...|..++|-++|++.+..+|++ +++..+.-+++.|-..+|...+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 28 VALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE-----ARYEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred HHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc-----hHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 333333344455567778888999999999999999999999999994 6777788899999999998888866
No 407
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.05 E-value=54 Score=29.03 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 109 IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 109 ~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+..-+|+..++.++..+|.+.. ....+..+|..+|-.+.|...|+..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~---~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQ---LKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 44556888999999999999999 8999999999999999999999887
No 408
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.08 E-value=1.3e+02 Score=31.20 Aligned_cols=60 Identities=8% Similarity=-0.015 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+.+..|..+|.+..+.|...+||+.|-+| +++. .+.+.-.+-.+.|.|++-++.+.-+-.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps---~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPS---NYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45678999999999999999999999774 4555 678888888899999999998888733
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=55.04 E-value=81 Score=24.43 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=21.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+|+-|+=.+.+.....-+-.++. .++.+|.+|-+.|+..++-+.++++
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~---~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPE---FLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HH---HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHH---HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444444444432223334 4555555555555555555555555
No 410
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.61 E-value=26 Score=26.26 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
..+|..+...|++++|..+|-+|+...|+-.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46799999999999999999999999887443
No 411
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=54.43 E-value=78 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.++-.|..+.+..+++||.+.|.++
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3444455555555555555555544
No 412
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.30 E-value=1.3e+02 Score=25.18 Aligned_cols=104 Identities=18% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCch-----h----HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhcCCC--H--HHH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAF-----S----EYARVGRALALYEVGDRE--EAIAEMEDVSISLKGY--P--EVH 170 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~-----~----~~a~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~--p--~~~ 170 (228)
+...|+|+.|++..+.||+.+=.-++ + +.-...-+...+..|+.- .-...+..+......+ . ..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 36789999999999999998733222 0 001233344455555521 1122333332111111 1 233
Q ss_pred HHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 171 AALAAALYV--------DKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 171 ~~la~~l~~--------~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
-..|..+.. ..++...|..++++|+++||+-..-..+++
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~ 219 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIER 219 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 344554532 235678999999999999998766444433
No 413
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=53.61 E-value=83 Score=23.89 Aligned_cols=70 Identities=9% Similarity=-0.033 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-----h-------hHHHHHHHHHHHHHcCCHHHHHHHHHHH----HH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-----F-------SEYARVGRALALYEVGDREEAIAEMEDV----SI 161 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-----~-------~~~a~~~la~~~~~~g~~~~A~~~~~~a----l~ 161 (228)
-+..+|....+.+++-.+|-.|++|+.+.-+-. + +--.-.|+|..+..+|+.+=.+++++-+ +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 366788899999999999999999987753321 0 0013578999999999999988888654 45
Q ss_pred hcCCCH
Q 027087 162 SLKGYP 167 (228)
Q Consensus 162 ~~~~~p 167 (228)
++|.-|
T Consensus 83 LiPQCp 88 (140)
T PF10952_consen 83 LIPQCP 88 (140)
T ss_pred hccCCC
Confidence 567655
No 414
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.50 E-value=1.4e+02 Score=27.45 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKD 128 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~ 128 (228)
+..+|-+|.+..-+++|..|.+++-+|+...|.
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 444455566666666666666666666666665
No 415
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.41 E-value=35 Score=18.13 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 027087 138 GRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 138 ~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+-.++.+.|+++.|...|++.
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444444444444444
No 416
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=52.05 E-value=28 Score=23.73 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+...|.-.-..|+|++|+.+|.+++.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455556667888888888887744
No 417
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.75 E-value=1.7e+02 Score=30.27 Aligned_cols=57 Identities=12% Similarity=-0.076 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.|..+|.+..+.|...+|++.|-++ .||..+...-.+.-. .|.|++-..++..+-+.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHh
Confidence 6788888888888888888888777 455444433333333 46788888777766554
No 418
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=51.38 E-value=1.4e+02 Score=24.57 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcC-CCHH
Q 027087 96 ALELLEKGRELQ-AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE-----VGDREEAIAEMEDVSISLK-GYPE 168 (228)
Q Consensus 96 a~a~~~lG~~~~-~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~-----~g~~~~A~~~~~~al~~~~-~~p~ 168 (228)
++.-+.+|.-+. -+++|++|...|..--.- -.++. .-+.+|.-++. .++...|++.++.+ -. ++|+
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-n~y~k---SCyKyG~y~~~GKgG~~~~l~~a~r~~~~a---C~~n~~~ 106 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-NSYPK---SCYKYGMYMLAGKGGDDASLSKAIRPMKIA---CDANIPQ 106 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCcH---HHHHhhhhhhcccCCCccCHHHHHHHHHHH---hccCCHH
Confidence 444555665554 356777777766653321 22344 44555544332 34567788877777 43 4567
Q ss_pred HHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhcCC
Q 027087 169 VHAALAAALYVDK-----H--ALLLAENQFTIATLLDP 199 (228)
Q Consensus 169 ~~~~la~~l~~~~-----~--~~~~A~~~~~~al~l~P 199 (228)
+-.++|.+++. + . +.+.|+++++++..++-
T Consensus 107 aC~~~gLl~~~-g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 107 ACRYLGLLHWN-GEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred HHhhhhhhhcc-CcCCccCCCCcHHHHHHHHHhccCCC
Confidence 76667766655 3 1 25778888888776643
No 419
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.29 E-value=34 Score=30.69 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKD--------FAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--------~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
..-+...|+-.+.++++++|...|..|..+.-. +.. +++.+|.++++.++.+..+-.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~e---al~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFE---ALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 344788899999999999999999999877532 345 788899999998888766543
No 420
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=50.96 E-value=80 Score=21.77 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.....|.+-...|-.++|...+.-.-.+=||... -..--+.+++.+|+..+|++.+...
T Consensus 8 L~VEaalAavNH~L~~ea~ailnalP~li~D~~~---r~vcea~llfGL~~~~~A~~~L~~~ 66 (79)
T TIGR02498 8 LVVEAALAAVNHSLPKEAHSILNALPQIIPDKKD---RLVCEAILLFGLNHKNDAVKLLENM 66 (79)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhcccccCCHhH---HHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 3455566667788888998888877777777666 6777889999999999999988765
No 421
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.79 E-value=37 Score=23.06 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHH
Q 027087 147 GDREEAIAEMEDV 159 (228)
Q Consensus 147 g~~~~A~~~~~~a 159 (228)
|+|++|..+|.++
T Consensus 20 ~~y~eA~~~Y~~~ 32 (75)
T cd02677 20 GDYEAAFEFYRAG 32 (75)
T ss_pred hhHHHHHHHHHHH
Confidence 4445444444444
No 422
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=50.77 E-value=75 Score=24.26 Aligned_cols=42 Identities=19% Similarity=0.035 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
+..+=..+...-+.+.|...|+.+++..|++.. ++..+-..+
T Consensus 79 LRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLp---aHla~i~~l 120 (139)
T PF12583_consen 79 LRDFQCSWIAKLEPENAEQVYEELLEAHPDHLP---AHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-TH---HHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHH---HHHHHHHcc
Confidence 334444556667778999999999999999998 776654443
No 423
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=50.48 E-value=86 Score=29.25 Aligned_cols=73 Identities=5% Similarity=-0.006 Sum_probs=55.1
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
..+.-++.+|+|...||.+-.-+..+|.+++-.+.|++...-.|-.+. +|...-.--...++|..-...|-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~---aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH---AWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH---HHHHHhcchhhhhhHHHHHHHHHHH
Confidence 557778999999999999999999999999999999998765565555 4443333333346677777777666
No 424
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.33 E-value=1.8e+02 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=35.8
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+++++..+.|...+ .+.++..-|-.+|.+....|++..|.++|.++..
T Consensus 647 al~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 44555555544432 3456677899999999999999999999999754
No 425
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=50.17 E-value=48 Score=19.00 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDR---EEAIAEMEDV 159 (228)
Q Consensus 135 a~~~la~~~~~~g~~---~~A~~~~~~a 159 (228)
..+|+|+++.+.+.. .+++..++++
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l 30 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEEL 30 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 678888888887655 4777777777
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.70 E-value=2.8e+02 Score=27.95 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS--EYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
..--.|.+....|++++|++..+.+++.=|.+... .-+....|.+..-.|++++|....+++.+...
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34455888899999999999999999988875431 11467888999999999999999998844433
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.72 E-value=47 Score=22.14 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+...|.-+-..|++++|+..|.+++.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566667888888888888744
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.53 E-value=38 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+...|.-.-+.|+|++|+.+|.+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455556667888888888888844
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.52 E-value=2.1e+02 Score=25.65 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVEN-YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
-....+..+++.++|..|.+.++..... .++..-..+.....|.-+=..-++++|.+.++..+.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456677788999999999999998875 333221112233344444557888899888887743
No 430
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=47.31 E-value=1.4e+02 Score=25.93 Aligned_cols=64 Identities=20% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLK--GYPE----VHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~p~----~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
...-+..+...|..++|+..++.. .+ ..+. .+..++.++.. .|.++-|...|+...+.-.+..-
T Consensus 216 ~~~eA~~l~~~~gl~~Al~~L~~~---~~~~~s~R~rf~~rL~~A~l~~~-~g~~~lA~~ll~~L~~~~~~~~L 285 (301)
T TIGR03362 216 LREEARALAAEGGLEAALQRLQQR---LAQAREPRERFHWRLLLARLLEQ-AGKAELAQQLYAALDQQIQQLGL 285 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhh---cccCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCc
Confidence 344466777778888888888875 33 2331 22233444444 46778888888877776544443
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.91 E-value=1.8e+02 Score=24.50 Aligned_cols=90 Identities=19% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc------CCC
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDRE-EAIAEMEDVSISL------KGY 166 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~-~A~~~~~~al~~~------~~~ 166 (228)
++.=+..+.+.|++.-|.+.-.-.++. .+.+.. ..-++..++...+.-+ +-.+..++++.=. ..+
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~---~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE---SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH---HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 334445555666665554443332222 122222 3355555555554332 2222222222111 135
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087 167 PEVHAALAAALYVDKHALLLAENQFT 192 (228)
Q Consensus 167 p~~~~~la~~l~~~~~~~~~A~~~~~ 192 (228)
|+.|..+|..++.. +++.+|+.+|-
T Consensus 90 p~LH~~~a~~~~~e-~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKE-GNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHH
Confidence 78888888888884 57888888773
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.53 E-value=71 Score=26.64 Aligned_cols=27 Identities=11% Similarity=-0.159 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 169 VHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 169 ~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
...+.+..+|...|+.++|++..++++
T Consensus 170 l~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 170 LALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 334445555555555566555554444
No 433
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.24 E-value=1.2e+02 Score=29.04 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Q 027087 105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL 184 (228)
Q Consensus 105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~ 184 (228)
.+.+.+..+++....+.-+.-...... ..+..+..+...|..++|-++|++.+...+. +.++..+.-++.. |-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~ 90 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSL---AMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNT-GLA 90 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHH---HHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh-hhh
Confidence 345667777777777665433333444 6788888999999999999999999555444 5666667767664 355
Q ss_pred HHHHHHHH
Q 027087 185 LLAENQFT 192 (228)
Q Consensus 185 ~~A~~~~~ 192 (228)
..|...++
T Consensus 91 ~~~~~~~~ 98 (578)
T PRK15490 91 KDAQLILK 98 (578)
T ss_pred hHHHHHHH
Confidence 55655544
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.08 E-value=73 Score=25.90 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=29.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 102 lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
...++.+.|+|++|++.+++..+ +|++.. -...+..+-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~---~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQK---LRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchh---HHHHHHHHH
Confidence 36677899999999999999988 888876 455554443
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.75 E-value=1.3e+02 Score=22.31 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
+..++.+-.-.-.+++|...++-. +..++..++ +..-+...+..+|+|++|
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL-~~~~~~~E~--v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWL-EQEGEMEEV--VALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHH-HHTTTTHHH--HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH-HhCCcHHHH--HHHHHHHHHHhhHHHHHH
Confidence 344455555566677777666654 334444431 566677778888888888
No 436
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=43.72 E-value=2.2e+02 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=38.7
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.++++.+.++..++.+..+|-..+ .++..+.++.++|. +++...++..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLD---gq~~~~qal~~lG~-~~~a~aI~~e 158 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLD---GQRLSAQALERLGY-AAVAQAIRDE 158 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 678889999999999999998888 88999999999994 5444444433
No 437
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.08 E-value=2.2e+02 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.018 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCch
Q 027087 183 ALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 183 ~~~~A~~~~~~al~l~P~~~~~ 204 (228)
-.+.|..++.++++++|+...+
T Consensus 114 ~~d~A~~~ll~A~~l~pr~~~A 135 (277)
T PF13226_consen 114 ACDQAVAALLKAIELSPRPVAA 135 (277)
T ss_pred HHHHHHHHHHHHHhcCCCchHH
Confidence 3578899999999999987764
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.48 E-value=1.5e+02 Score=28.76 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=31.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
....++++.....+...-...-+... .+|-+|.++..+|+.++|...|+++
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~r---w~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDE---WRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHh---hHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667776666666554222223344 5667777766677777777777776
No 439
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=42.34 E-value=3.7e+02 Score=26.97 Aligned_cols=115 Identities=11% Similarity=-0.039 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH---HHHHcCCHHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL---ALYEVGDREEAIAE 155 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~---~~~~~g~~~~A~~~ 155 (228)
+..+..+..-+.+++.+...+..+-.++.+.|++++-...=.+..++.|..+. .|.+-.. .....++-.+....
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~---lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPH---LWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChH---HHHHHHHHHHhhccCcchhHHHHH
Confidence 34445555566888888889999999999999999998888888899999887 4444322 22334778899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhc
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDK------HALLLAENQFTIATLL 197 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~------~~~~~A~~~~~~al~l 197 (228)
|++++. +-.++..+...+..++..+ ++++.-+..|.++|+.
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 999932 2334445544444333322 4567777888888764
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.58 E-value=1.4e+02 Score=22.16 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 114 KALQYFTLVVENYKD--FAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 114 ~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+.+.|+......=. .+. -|...|..+...|++++|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~---fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL---FYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH---HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 566666665554432 333 3556666666777777777776665
No 441
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=40.50 E-value=9.1 Score=34.33 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.8
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|--||+||..
T Consensus 322 ~LCYVTPaEHL~LP~~ 337 (432)
T COG0422 322 MLCYVTPAEHLGLPNV 337 (432)
T ss_pred eEEecCcHHHcCCCCH
Confidence 6799999999988764
No 442
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.95 E-value=71 Score=18.04 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCc
Q 027087 110 GDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
++++.|...|++.+...|+-.
T Consensus 1 kE~dRAR~IyeR~v~~hp~~k 21 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPEVK 21 (32)
T ss_pred ChHHHHHHHHHHHHHhCCCch
Confidence 357788888888888887744
No 443
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.75 E-value=63 Score=21.43 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+...|.-.-..|++++|+..|.+++.
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556667888888888888844
No 444
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.38 E-value=2.3e+02 Score=26.40 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCch--hHHHHHH--HHHHHHHcCCHH---HHHHHHHHHHH-----
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVEN----YKDFAF--SEYARVG--RALALYEVGDRE---EAIAEMEDVSI----- 161 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l----~P~~~~--~~~a~~~--la~~~~~~g~~~---~A~~~~~~al~----- 161 (228)
.++..|.++.....|++|+..+-.|=+. +|...+ .-|+..| +.+||+.+.+.. +|..-+..+-+
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3567788889999999998887655322 111110 0123444 456777766543 44444333311
Q ss_pred -----------hcCCCHH-H-----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 162 -----------SLKGYPE-V-----HAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 162 -----------~~~~~p~-~-----~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+-+..|+ + +...|.+.|.++ +-++|-+.++.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg-~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQG-QRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHH
Confidence 1123452 2 223367777755 55999999988754
No 445
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.00 E-value=2.9e+02 Score=24.77 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CC--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCH---HHHHHHH
Q 027087 105 ELQAIGDFNKALQYFTLVVENYK-DF--AFSEYARVGRALALYEVGDREEAIAEMEDVSISLK----GYP---EVHAALA 174 (228)
Q Consensus 105 ~~~~~g~~~~Ai~~~~~Al~l~P-~~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~p---~~~~~la 174 (228)
+..+.+|.++|++.+++.++.-- .. ..+.|.....|.++...||.+++.+.+.+.-..+. -.+ ...+.++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 34567799999999999865421 11 23456778889999999999999998888722111 112 2345566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 027087 175 AALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~ 196 (228)
.-||+..|++. .+|+.+|.
T Consensus 164 sqYyk~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 164 SQYYKKIGDFA---SYYRHALL 182 (380)
T ss_pred HHHHHHHHhHH---HHHHHHHH
Confidence 66666544544 44555544
No 446
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.94 E-value=35 Score=31.22 Aligned_cols=30 Identities=37% Similarity=0.371 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 134 YARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
|+..++|+++-++|+.++|+..|++.|..+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i 52 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLI 52 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHH
Confidence 366777777777777777777777776554
No 447
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=38.31 E-value=74 Score=22.67 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
..++...+..+.-..+.|+|++|...++++
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456667777777778888888888888776
No 448
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.08 E-value=1.1e+02 Score=29.05 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 95 DALELLEKGRELQA--IGDFNKALQYFTLVVENYKDFA--FSEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 95 ~a~a~~~lG~~~~~--~g~~~~Ai~~~~~Al~l~P~~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
.+.++-++|.+-.. ..+-..+++.|.+||...-.+. ...|.|.-+|-.+++.++|.+|+..+-++-..+..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677766542 3334456777777776542211 12267888899999999999999998888554443
No 449
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=37.31 E-value=72 Score=21.35 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
+...|.-.-..|++++|+..|.+++..
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555678888888888887443
No 450
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=37.30 E-value=47 Score=29.32 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
+.+.++|..|....+.|..-+||..|+.|+++.|+-..
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs 54 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIES 54 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHH
Confidence 34667899999999999999999999999999888544
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.29 E-value=2.5e+02 Score=23.64 Aligned_cols=85 Identities=18% Similarity=0.015 Sum_probs=48.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
...+++.+..+|..+.+.|++.+|+.+|-.. ++.. ..+...+-. .++.+. .+.+++...
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~-~~~~~~ll~------------~~~~~~---~~~e~dlfi 144 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPS-AFAYVMLLE------------EWSTKG---YPSEADLFI 144 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHH-HHHHHHHHH------------HHHHHT---SS--HHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChh-HHHHHHHHH------------HHHHhc---CCcchhHHH
Confidence 3457888999999999999999998888442 2222 001111111 122222 444456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.++.+.+-..++...|...+..-++.
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66665555557888888877766665
No 452
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.67 E-value=3.1e+02 Score=24.47 Aligned_cols=97 Identities=16% Similarity=0.036 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch--h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF--S---EYARVGRALALYEVGDREEAIAEMEDVSISLK--GYPE 168 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~--~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~p~ 168 (228)
......++.+|.+.++|..|-..+.- +.++..... + .-.+..+|..|.+.|+..+|.....++..... .|++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 34568889999999999999877654 333332110 0 01357789999999999999999988844333 3454
Q ss_pred HHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 027087 169 VHAALA----AALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 169 ~~~~la----~~l~~~~~~~~~A~~~~~~a 194 (228)
....+- .++-. .++|-||-..|-+.
T Consensus 182 Lqie~kvc~ARvlD~-krkFlEAAqrYyel 210 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDY-KRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 433333 33323 24555554444444
No 453
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.47 E-value=85 Score=28.86 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 104 RELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 104 ~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
..+.-+||+.. --+.++++|.... .|..-|..|.+|..+++|.+|++.|-.++.-+..--....-....+-.
T Consensus 243 R~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~ 318 (525)
T KOG3677|consen 243 RMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDM 318 (525)
T ss_pred HHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhh
Confidence 34456899655 4455667776432 011236789999999999999999999854332211111111111222
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 180 DKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 180 ~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
.+++.+.--+....++.+.|..-+
T Consensus 319 inKq~eqm~~llai~l~~yPq~iD 342 (525)
T KOG3677|consen 319 INKQNEQMHHLLAICLSMYPQMID 342 (525)
T ss_pred hhhhHHHHHHHHHHHHHhCchhhh
Confidence 233445555556666677775443
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.19 E-value=2.5e+02 Score=25.19 Aligned_cols=61 Identities=18% Similarity=0.047 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--HHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPE--VHAAL--AAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~--~~~~l--a~~l~~~~~~~~~A~~~~~~al~l 197 (228)
....+.-++..++|..|.+.++.+...++.+.. .+..+ |...+. .-++++|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 356677888999999999999999776554443 23333 333444 35889999999988765
No 455
>PRK11619 lytic murein transglycosylase; Provisional
Probab=36.05 E-value=4.2e+02 Score=25.76 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=39.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 142 ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+-...++.+.....+..+-......+..++-+|.++.. .|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhc
Confidence 33377888887777777533334456778889998777 4678999999999854
No 456
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=36.02 E-value=83 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
..++...+.-+.-..+.|+|++|.+.++++
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666677777778887777777775
No 457
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=35.93 E-value=83 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=23.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
+..++...+.-+.-..+.|||++|.+.++++
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666777777778888888888887776
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.65 E-value=3.3e+02 Score=24.52 Aligned_cols=96 Identities=15% Similarity=-0.142 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG------------ 165 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------ 165 (228)
.-+.+-....+..+..+=|+.-..|++++|+-.. ++..++. .+.--..+|.+.++++++....
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~---AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECAT---AYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhh---HHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 3455556677888899999999999999999988 7776654 2334466788888887654321
Q ss_pred ---------CHHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 166 ---------YPEV--H--AALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 166 ---------~p~~--~--~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
|-.+ + ..++.|-.. .|+..||.+.|+...+--|
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence 1111 1 123444444 4689999999987776555
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.58 E-value=2.7e+02 Score=24.58 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=46.8
Q ss_pred cChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 91 SRVSDALE--LLEKGRELQAIGDFNKALQYFTLVVEN-YKDF--AFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 91 ~~p~~a~a--~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.||+.... -|..|..-...++.++=|+.+++.++- .-++ ....-++.|+|.-|.+.++.+.+.+.+++.++
T Consensus 68 ~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 68 GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35654433 355666666667777777777555443 2233 11122789999999999999999999888844
No 460
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=35.32 E-value=1.9e+02 Score=24.95 Aligned_cols=63 Identities=16% Similarity=-0.011 Sum_probs=43.1
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 027087 84 DASAAVSSRVSDALELLEKGRELQ----------------------AIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL 141 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~----------------------~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~ 141 (228)
..+.=++..|++..++..+|..+. ...-.+.|...+.+|++++|.... +...+-.
T Consensus 65 ~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~---A~~~m~~ 141 (277)
T PF13226_consen 65 VLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVA---AAIGMIN 141 (277)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchH---HHHHHHH
Confidence 334445778888888887777662 223356899999999999999988 6665555
Q ss_pred HHHHcCCH
Q 027087 142 ALYEVGDR 149 (228)
Q Consensus 142 ~~~~~g~~ 149 (228)
+-...|+.
T Consensus 142 ~s~~fgeP 149 (277)
T PF13226_consen 142 ISAYFGEP 149 (277)
T ss_pred HHhhcCCc
Confidence 44444443
No 461
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=34.46 E-value=1.3e+02 Score=20.03 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
|-.++|...+.-.=.+=||-.. -..--+.+++.+|+..+|++.+...
T Consensus 7 gL~~ea~aIL~alP~Li~D~~~---r~~c~alllfGL~~~~~Al~~L~~~ 53 (66)
T PF06287_consen 7 GLLKEARAILNALPQLIPDEED---RAVCEALLLFGLGEQAAALQLLADS 53 (66)
T ss_pred ccHHHHHHHHHhchhhcCCHhH---HHHHHHHHHHHcCChHHHHHHHhCC
Confidence 4556666666655555565554 4666778888888888888877665
No 462
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=33.57 E-value=94 Score=22.55 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=24.9
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
...++...+.-+.-..+.|||++|.+.++++-
T Consensus 16 ~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~ 47 (104)
T PRK09591 16 HSGNARTEVHEAFAAMREGNFDLAEQKLNQSN 47 (104)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888899988888888863
No 463
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.52 E-value=15 Score=34.68 Aligned_cols=61 Identities=23% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVV--ENYKDFAFSEYARVGRALALYEVGDREEAIAEMED 158 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al--~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 158 (228)
...++.-+.++...|+++.|...+++.- .+.|.... ......+.+....|++++|+..+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~--~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQA--RYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHH--HHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3444555777788888888888887765 33343321 1356667777778888888888874
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.88 E-value=1.8e+02 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALY-EVGDREEAIAEMEDV 159 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~-~~g~~~~A~~~~~~a 159 (228)
+..++.+..+.|+|++.+....+++..+++...- =+..+..+|- ..|....+...+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~e--ERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEE--ERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHH--HHHHHHHHHHhccccchHHHHhhhhH
Confidence 4455666666677777777777666666654331 2344444442 224444444444443
No 465
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.34 E-value=3.1e+02 Score=30.87 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 107 QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 107 ~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
...|+++.|..+|++++..+|+... .+...-...+..|.++..+...+-.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~---~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEK---HHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCcccc---chhhHHHhhhcccchhHHHhhhcch
Confidence 4556666666666666666666555 4454455555666666666665555
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.29 E-value=1.1e+02 Score=22.79 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=27.6
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
.+--+.+.-|...+..+...|++++|.+.|+++|
T Consensus 93 ~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 93 GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4445667778888999999999999999999875
No 467
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=31.25 E-value=2.5e+02 Score=21.76 Aligned_cols=97 Identities=19% Similarity=0.100 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCc------------h-----------------hHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVEN-------YKDFA------------F-----------------SEYARVGRALA 142 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-------~P~~~------------~-----------------~~~a~~~la~~ 142 (228)
....+......|+.++|+..++++... +|.+. . ........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 345566667788888888888877543 44444 0 01346777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhc-------CCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 143 LYEVGDREEAIAEMEDVSISL-------KGYP-EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~-------~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+.+.|+.++|.+.++-+-..+ |... ......+..+.. +|++.+|...+..+++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~-~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLD-EGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHH-CCCHHHHHHHHHHHhc
Confidence 999999999999999882111 1111 333445666666 5699999999988874
No 468
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=31.22 E-value=87 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=21.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
...|+...+--|.-+.+.|+|++|....+++
T Consensus 15 ~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA 45 (105)
T COG1447 15 HAGNARSKAYEALKAAKEGDFEEAEELIQEA 45 (105)
T ss_pred HcccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666666777777778888777777765
No 469
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=31.20 E-value=66 Score=31.35 Aligned_cols=90 Identities=18% Similarity=0.030 Sum_probs=55.1
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
++|-.+-+.+...+.-+.+...+.-|.+.|.+.=. .-.+...+.+.+++++|....++- -..-+++
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~h---Pe~~~dV 806 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKH---PEFKDDV 806 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhC---ccccccc
Confidence 44444455555666666677777777777776411 233345666778888887766664 2223566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 170 HAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
++-.|..+.+ .++++||.+.|-+|
T Consensus 807 y~pyaqwLAE-~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 807 YMPYAQWLAE-NDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHHHHhhh-hhhHHHHHHHHHHh
Confidence 6666766655 45677777766654
No 470
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.10 E-value=2.1e+02 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
.+-.+|.+|.+.|+.+.|.+.|+.=-.+-|++
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 34445555555555555555554444444443
No 471
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=30.83 E-value=1.6e+02 Score=24.81 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 150 EEAIAEMEDVSIS-----LKGYP---EVHAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 150 ~~A~~~~~~al~~-----~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
++|...|++++.. .|.+| ....+.+.++|...++.++|.+..+++
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~a 197 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 197 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666432 23445 334455566666656666665444433
No 472
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.83 E-value=93 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCch
Q 027087 100 LEKGRELQAIG-DFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 100 ~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
..+|..+...| +.+++..+|-+||...|+-.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 46699999999 999999999999998887544
No 473
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.59 E-value=1.3e+02 Score=28.20 Aligned_cols=49 Identities=29% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
..+++.-...+|+|-=+.+.+++++-.+|++.. |....+.++.++|=-.
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~---Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKA---ARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHH---HHHHHHhHHHHhhhhh
Confidence 356677778899999999999999999999999 8999999988877433
No 474
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=29.59 E-value=1.2e+02 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=26.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+..++...+.-+.-..+.|+|++|.+.++++-
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~ 58 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 58 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677778888888889999999999888873
No 475
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.27 E-value=4.9e+02 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 143 LYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
++..|++.-|-..|+-.++..++++
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~ 466 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDST 466 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCch
Confidence 3445555555555555544444444
No 476
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=28.89 E-value=19 Score=32.61 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.4
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|.-||.||..
T Consensus 321 fLCYVTPaEHL~LP~~ 336 (423)
T TIGR00190 321 FLCYVTPKEHLALPNV 336 (423)
T ss_pred eEEecCcHHHcCCCCH
Confidence 4699999999988754
No 477
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=28.77 E-value=71 Score=29.46 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
|--+=.+|++.|++.+|++.-...+-.+|++.. +..|+-.-.-.+|.-++-+.+++. ..-..++.++.-++
T Consensus 136 y~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~---ik~~ldyYq~~l~~s~d~l~DlE~------~~~~~~Fir~v~~y 206 (471)
T KOG4459|consen 136 YQYLQFAYFKVGELEKAVAAAHTFLVANPDDED---IKQNLDYYQTMLGVSEDELTDLER------REHEQWFIRGVRLY 206 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHhcceeeecCCcHHH---HHHHHHHHHhccCCCccccccccc------chHHHHHHHHhhhc
Confidence 333446788899999999998888888999887 666665444344544443332222 12245555555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 027087 179 VDKHALLLAENQFTIAT 195 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al 195 (228)
. +++.+.....++.+|
T Consensus 207 ~-~~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 207 S-GEDPRQCVPEVELAL 222 (471)
T ss_pred c-ccCchhcchhHHHHH
Confidence 5 334444444444333
No 478
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=28.75 E-value=2.1e+02 Score=20.15 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+.-.+..+...+..|+|++|.....++..
T Consensus 45 A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 45 AREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44456667777777888888777777643
No 479
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.65 E-value=5.4e+02 Score=24.83 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHh---cCCCHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALAL-YEVGDREEAIAEMEDVSIS---LKGYPEVHAA 172 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~-~~~g~~~~A~~~~~~al~~---~~~~p~~~~~ 172 (228)
+.|..-..+.+.|=+.-|.+...-.++++|. ++. +...+-..| .+..+|+==|..++.. +. +..-|...+.
T Consensus 344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALrareYqwiI~~~~~~-e~~n~l~~~PN~~yS 419 (665)
T KOG2422|consen 344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL---GILYLIDIYALRAREYQWIIELSNEP-ENMNKLSQLPNFGYS 419 (665)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHHHHhHHHHHHHHHHH-HhhccHhhcCCchHH
Confidence 3444456667899999999999999999999 776 433333333 4445565444444443 11 1223444444
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHhcCC
Q 027087 173 LAAALYVDKHA----LLLAENQFTIATLLDP 199 (228)
Q Consensus 173 la~~l~~~~~~----~~~A~~~~~~al~l~P 199 (228)
++.+++...++ -+.|...+.+|+...|
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 44444433222 4678888999999888
No 480
>PRK12798 chemotaxis protein; Reviewed
Probab=28.46 E-value=4.5e+02 Score=24.16 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC-CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHH
Q 027087 117 QYFTLVVENYKD-FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----EVHAALAAALYVDKHALLLAENQF 191 (228)
Q Consensus 117 ~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~ 191 (228)
..++..++.++. +.+ ....-|..-|-.|+-+++.+.+..+ .+.+- ..+..|.........+..+|++.|
T Consensus 98 ~vlr~L~~~d~~~~~d---~~L~~g~laY~~Gr~~~a~~~La~i---~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~l 171 (421)
T PRK12798 98 ATLRKLLARDKLGNFD---QRLADGALAYLSGRGREARKLLAGV---APEYLPAELGAYLALVQGNLMVATDPATALKLL 171 (421)
T ss_pred HHHHHHHHcCCCChhh---HHHHHHHHHHHcCCHHHHHHHhhcC---ChhhcCchhhhHHHHHHHHHhcccCHHHHHHHH
Q ss_pred HHHHhcCC
Q 027087 192 TIATLLDP 199 (228)
Q Consensus 192 ~~al~l~P 199 (228)
..+--+.|
T Consensus 172 D~aRLlaP 179 (421)
T PRK12798 172 DQARLLAP 179 (421)
T ss_pred HHHHHhCC
No 481
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=27.16 E-value=20 Score=33.72 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.8
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|--||+||..
T Consensus 474 ~LCYVTPaEHLgLP~~ 489 (607)
T PRK09284 474 MLCYVTPKEHLGLPNK 489 (607)
T ss_pred eEEecChHHHcCCCCH
Confidence 6799999999988754
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.32 E-value=1.1e+02 Score=30.36 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-HHHHHHHHHHH-HHhc---C--CCH-------HHHHHH
Q 027087 108 AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-REEAIAEMEDV-SISL---K--GYP-------EVHAAL 173 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~~~~a-l~~~---~--~~p-------~~~~~l 173 (228)
..+-.+.|+..|+++.+..|... +=.|++..+...|+ |+...+ ++++ +.+. . ..- ++-+.+
T Consensus 299 Da~s~~~a~~WyrkaFeveP~~~----sGIN~atLL~aaG~~Fens~E-lq~IgmkLn~LlgrKG~leklq~YWdV~~y~ 373 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEVEPLEY----SGINLATLLRAAGEHFENSLE-LQQIGMKLNSLLGRKGALEKLQEYWDVATYF 373 (1226)
T ss_pred chhhHHHHHHHHHHHhccCchhh----ccccHHHHHHHhhhhccchHH-HHHHHHHHHHHhhccchHHHHHHHHhHHHhh
Confidence 34667889999999999999865 46788888887776 343333 3332 1110 0 011 222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+.... .++|.+|++.-+...++.|-
T Consensus 374 ~asVL--And~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 374 EASVL--ANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhhh--ccCHHHHHHHHHHHhccCCc
Confidence 32222 25899999999999999873
No 483
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=26.29 E-value=1.6e+02 Score=25.59 Aligned_cols=99 Identities=17% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhcCCCH------H
Q 027087 105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----------VGDREEAIAEMEDVSISLKGYP------E 168 (228)
Q Consensus 105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~p------~ 168 (228)
.++..++.-.|+..|...+.-.|.+.- +...-+.++.+ .-..+.|.+.+..++....... -
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~---~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~ 80 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLT---ALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGL 80 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCccee---EEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeee
Confidence 344556666677777777776776654 33222222211 2334577777777754333211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 169 VHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 169 ~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
..+.++..+|.. .+|+-|..+|..|+.+.-++.-..|.
T Consensus 81 ~~~~~~v~~~~i-k~Ye~a~~~F~~A~~~~~~d~L~~We 118 (368)
T COG5091 81 VNFRYFVHFFNI-KDYELAQSYFKKAKNLYVDDTLPLWE 118 (368)
T ss_pred ehhhhHHHhhhH-HHHHHHHHHHHHHHHHhhcccchHHH
Confidence 223344445553 47888888888888876666555553
No 484
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=26.19 E-value=21 Score=32.44 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.3
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|.-||.||..
T Consensus 324 fLCYVTPaEHL~LP~~ 339 (431)
T PRK13352 324 FLCYVTPAEHLGLPNV 339 (431)
T ss_pred eEEecChHHHcCCCCH
Confidence 4699999999988754
No 485
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=26.04 E-value=1.2e+02 Score=16.25 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 116 LQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 116 i~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
++.-.+++..+|.+.. +|..+-.++
T Consensus 3 l~~~~~~l~~~pknys---~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYS---AWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHCccccc---HHHHHHHHH
Confidence 4455566666776666 565554444
No 486
>PLN02444 HMP-P synthase
Probab=25.98 E-value=22 Score=33.62 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.7
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|--||.||..
T Consensus 479 fLCYVTPaEHLgLP~~ 494 (642)
T PLN02444 479 LLCYVTPKEHLGLPNR 494 (642)
T ss_pred eEEecChHHHcCCCCH
Confidence 5699999999988764
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.39 E-value=1.1e+02 Score=25.63 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=16.6
Q ss_pred HcCCHHHHHHHHHHHHHhcCCC
Q 027087 108 AIGDFNKALQYFTLVVENYKDF 129 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l~P~~ 129 (228)
..++...|+..+++|++++|+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3457778888888888888774
No 488
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.25 E-value=2e+02 Score=18.61 Aligned_cols=56 Identities=23% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..|..+...|+|=+|=+.++.+-...++.... +.....-|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345566667777777777777766544433210 01122223344556666666543
No 489
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=25.06 E-value=20 Score=32.42 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=8.1
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|.-||.||+.
T Consensus 320 fLCYVTPaEHL~LP~~ 335 (420)
T PF01964_consen 320 FLCYVTPAEHLGLPTP 335 (420)
T ss_dssp EEE---TTTTTS---H
T ss_pred eEeeccHHHHhCCCCH
Confidence 4599999999987753
No 490
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.89 E-value=97 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVEN 125 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l 125 (228)
-++.+-+..++|.++-..+++++|+..|++.|.+
T Consensus 18 ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 18 AYKGAYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 3445666789999999999999999999999865
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.86 E-value=4.7e+02 Score=26.38 Aligned_cols=24 Identities=21% Similarity=-0.046 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+-..+.-|...|+|+-|.+.|.++
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc
Confidence 334455566667777777766665
No 492
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=23.61 E-value=1.3e+02 Score=26.59 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+++..|....+.|..-+|+..|+.|
T Consensus 21 ~l~~~av~~Eq~G~l~dai~fYR~A 45 (366)
T KOG2997|consen 21 ALYEKAVLKEQDGSLYDAINFYRDA 45 (366)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 5677778888889999999999999
No 493
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.51 E-value=2e+02 Score=22.17 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
..+|..+..+|+++++..++-.||...|...+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 46799999999999999999888888777544
No 494
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.50 E-value=1.4e+02 Score=27.16 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 027087 149 REEAIAEMEDVSISLKGYPEVHAALAAALYVDK-----------HALLLAENQFTIAT 195 (228)
Q Consensus 149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~-----------~~~~~A~~~~~~al 195 (228)
+..|+++++++. ...+|+.|..++-++..+| .-|.+|+..+++|=
T Consensus 334 ~~~Al~yL~kA~--d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 334 IKKALEYLKKAQ--DEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHH--HS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--ccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 346777888772 3566777777777666654 23455555555543
No 495
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=23.16 E-value=2.5e+02 Score=19.11 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+-.++|...+.-.-.+=||... -..-.+++++.+|+..+|++.+...
T Consensus 8 ~L~~qa~aiLnvlPqLIpD~~~---r~vC~alllfGLne~~~A~~~La~~ 54 (75)
T PRK15356 8 SLISQVHAMLPALTVIVPDKKL---QLVCLALLLAGLNEPLKAAKILSDI 54 (75)
T ss_pred chHHHHHHHHHhhhhhcCCHHH---HHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 3345666666666666677665 5677888889999999988877665
No 496
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.08 E-value=4.5e+02 Score=23.79 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=43.6
Q ss_pred ChhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 92 RVSDALELLE--KGRELQAIGDFNKALQYFTLVVENYKDFAFS----EYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 92 ~p~~a~a~~~--lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~----~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
||-+...... +...+++.++|..|...|+.++...++.... .|.....|..+=..-++++|.+.++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 5555444444 4557889999999999999999876532110 1123334444455788889999998
No 497
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=23.05 E-value=3.7e+02 Score=20.92 Aligned_cols=61 Identities=18% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 136 RVGRAL-ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 136 ~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+..+|+ ++..+|+-|+-.+.+..+..-...+|+....++.+|... |+..++.+.+++|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl-g~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL-GNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh-cchhhHHHHHHHHHHh
Confidence 455655 456778888888888887333345689999999999885 5779999998888763
No 498
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=22.99 E-value=1.6e+02 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 111 DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 111 ~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
-...|+.++++|.. -+.++ .|.++|-++..+|+.
T Consensus 333 l~~~Al~yL~kA~d--~ddPe---tWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPE---TWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--cCChh---HHHHHHHHHhhhhcc
Confidence 35678888888864 55666 788888888776653
No 499
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.96 E-value=5.2e+02 Score=27.14 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 027087 140 ALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 140 a~~~~~~g~~~~A~~~~~~a 159 (228)
|..|...|+.++|++.|+..
T Consensus 959 al~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 44555556666666555544
No 500
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=21.68 E-value=2e+02 Score=23.35 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENY 126 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~ 126 (228)
+++++..+.++.++|+.++|++.+.++.+..
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~Ra 163 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKRA 163 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Done!