Query 027087
Match_columns 228
No_of_seqs 271 out of 2189
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 4E-21 1.4E-25 144.0 15.1 115 88-206 5-119 (126)
2 3gyz_A Chaperone protein IPGC; 99.8 3.6E-20 1.2E-24 143.7 13.2 113 86-202 26-138 (151)
3 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-19 4.6E-24 139.3 13.6 127 78-208 13-140 (150)
4 4gyw_A UDP-N-acetylglucosamine 99.8 4.6E-19 1.6E-23 168.5 19.5 150 72-226 19-173 (723)
5 2vgx_A Chaperone SYCD; alterna 99.8 6.2E-19 2.1E-23 135.5 14.8 116 85-204 10-125 (148)
6 2pl2_A Hypothetical conserved 99.8 2.9E-18 9.8E-23 139.2 16.1 130 72-206 49-189 (217)
7 3urz_A Uncharacterized protein 99.8 1.9E-18 6.6E-23 139.3 14.2 127 73-202 15-191 (208)
8 2xcb_A PCRH, regulatory protei 99.8 2E-18 6.9E-23 130.8 13.4 118 85-206 7-124 (142)
9 2h6f_A Protein farnesyltransfe 99.8 4.2E-18 1.4E-22 150.8 16.4 151 73-227 108-269 (382)
10 2pl2_A Hypothetical conserved 99.8 7.7E-18 2.6E-22 136.7 16.2 129 73-206 16-155 (217)
11 3sz7_A HSC70 cochaperone (SGT) 99.8 1.1E-17 3.6E-22 129.4 14.6 117 91-211 6-122 (164)
12 4gcn_A Protein STI-1; structur 99.7 1.4E-17 4.9E-22 124.4 12.5 105 93-201 5-116 (127)
13 4gyw_A UDP-N-acetylglucosamine 99.7 1.8E-17 6.1E-22 157.7 16.2 132 91-227 4-140 (723)
14 3vtx_A MAMA; tetratricopeptide 99.7 1.6E-16 5.4E-21 124.1 19.0 150 73-227 16-170 (184)
15 3upv_A Heat shock protein STI1 99.7 2.6E-17 9E-22 121.4 13.5 102 93-198 1-102 (126)
16 2h6f_A Protein farnesyltransfe 99.7 1.7E-17 5.9E-22 146.8 12.6 133 72-207 141-279 (382)
17 1hxi_A PEX5, peroxisome target 99.7 1E-16 3.5E-21 118.9 13.7 102 98-203 19-120 (121)
18 3vtx_A MAMA; tetratricopeptide 99.7 3.3E-16 1.1E-20 122.3 16.2 127 72-202 49-175 (184)
19 2hr2_A Hypothetical protein; a 99.7 7.3E-17 2.5E-21 126.0 12.0 109 95-204 10-138 (159)
20 4i17_A Hypothetical protein; T 99.7 2.3E-16 7.8E-21 127.5 15.2 131 72-206 17-157 (228)
21 4gco_A Protein STI-1; structur 99.7 3.1E-16 1.1E-20 117.1 14.4 103 72-177 23-125 (126)
22 2e2e_A Formate-dependent nitri 99.7 4.6E-16 1.6E-20 121.1 14.6 126 76-205 24-152 (177)
23 4i17_A Hypothetical protein; T 99.7 4.6E-16 1.6E-20 125.7 14.6 131 72-206 52-218 (228)
24 3q49_B STIP1 homology and U bo 99.7 6.6E-16 2.3E-20 114.6 13.1 107 91-201 4-110 (137)
25 2pzi_A Probable serine/threoni 99.7 1.1E-16 3.8E-21 151.0 10.9 133 73-210 444-576 (681)
26 3urz_A Uncharacterized protein 99.7 7.3E-16 2.5E-20 124.1 12.9 109 95-207 3-127 (208)
27 4ga2_A E3 SUMO-protein ligase 99.7 6.8E-17 2.3E-21 124.0 6.3 123 101-227 2-129 (150)
28 2kck_A TPR repeat; tetratricop 99.7 5.4E-16 1.9E-20 110.0 10.6 108 91-202 1-111 (112)
29 3rkv_A Putative peptidylprolyl 99.7 1.1E-15 3.7E-20 117.7 12.5 105 94-202 9-131 (162)
30 2vyi_A SGTA protein; chaperone 99.7 4.6E-15 1.6E-19 107.6 14.8 113 90-206 6-118 (131)
31 2lni_A Stress-induced-phosphop 99.6 2.2E-15 7.6E-20 110.2 12.7 111 92-206 12-122 (133)
32 1elw_A TPR1-domain of HOP; HOP 99.6 6.5E-15 2.2E-19 105.1 14.8 108 95-206 3-110 (118)
33 1w3b_A UDP-N-acetylglucosamine 99.6 9.5E-15 3.2E-19 126.6 18.8 128 75-206 216-343 (388)
34 3qky_A Outer membrane assembly 99.6 5E-15 1.7E-19 122.3 15.9 131 72-203 25-183 (261)
35 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-15 4.4E-20 132.0 12.8 122 81-206 132-268 (336)
36 2pzi_A Probable serine/threoni 99.6 9.8E-16 3.4E-20 144.5 12.5 149 73-227 402-563 (681)
37 2fo7_A Synthetic consensus TPR 99.6 1.6E-14 5.4E-19 104.8 16.3 124 74-201 13-136 (136)
38 3as5_A MAMA; tetratricopeptide 99.6 1.9E-14 6.6E-19 110.3 17.4 128 73-204 53-180 (186)
39 1w3b_A UDP-N-acetylglucosamine 99.6 5E-15 1.7E-19 128.4 15.2 134 72-209 247-380 (388)
40 2xev_A YBGF; tetratricopeptide 99.6 6.1E-15 2.1E-19 108.2 13.4 109 97-206 3-114 (129)
41 1na0_A Designed protein CTPR3; 99.6 1.5E-14 5.2E-19 104.0 15.2 113 91-207 3-116 (125)
42 2dba_A Smooth muscle cell asso 99.6 5.6E-15 1.9E-19 110.2 13.2 112 91-206 23-137 (148)
43 4abn_A Tetratricopeptide repea 99.6 3.9E-15 1.3E-19 134.6 14.4 130 73-206 113-262 (474)
44 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.2E-14 4.1E-19 115.6 15.7 125 73-204 17-157 (213)
45 2vsy_A XCC0866; transferase, g 99.6 4.9E-15 1.7E-19 136.0 15.2 135 72-209 33-169 (568)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.1E-19 118.5 16.5 120 79-202 22-145 (275)
47 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-14 1.2E-18 114.2 18.4 131 72-206 67-197 (243)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-14 4.9E-19 116.5 15.6 134 72-209 101-234 (243)
49 3uq3_A Heat shock protein STI1 99.6 2.2E-14 7.4E-19 116.1 16.7 111 84-198 127-237 (258)
50 3qou_A Protein YBBN; thioredox 99.6 6.1E-15 2.1E-19 124.7 13.1 128 72-203 127-254 (287)
51 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 5.4E-15 1.8E-19 133.3 13.3 122 81-206 253-389 (457)
52 2vsy_A XCC0866; transferase, g 99.6 3.2E-14 1.1E-18 130.6 18.6 125 78-206 5-129 (568)
53 4eqf_A PEX5-related protein; a 99.6 1.2E-14 4E-19 124.9 14.6 125 75-203 190-316 (365)
54 4abn_A Tetratricopeptide repea 99.6 6.1E-15 2.1E-19 133.3 12.9 129 73-206 148-296 (474)
55 1a17_A Serine/threonine protei 99.6 3.6E-14 1.2E-18 107.7 15.3 122 74-199 25-148 (166)
56 3as5_A MAMA; tetratricopeptide 99.6 2.4E-14 8.1E-19 109.8 14.3 129 74-206 20-148 (186)
57 3gyz_A Chaperone protein IPGC; 99.6 1.1E-14 3.9E-19 112.6 12.5 93 72-167 46-138 (151)
58 2vq2_A PILW, putative fimbrial 99.6 5.1E-14 1.7E-18 111.6 16.3 124 76-203 22-148 (225)
59 2fbn_A 70 kDa peptidylprolyl i 99.6 3.4E-14 1.2E-18 112.8 15.1 112 91-206 33-160 (198)
60 3uq3_A Heat shock protein STI1 99.6 3.2E-14 1.1E-18 115.1 15.2 131 72-206 48-211 (258)
61 4eqf_A PEX5-related protein; a 99.6 4.4E-14 1.5E-18 121.3 16.4 127 74-204 111-283 (365)
62 1a17_A Serine/threonine protei 99.6 1.3E-13 4.4E-18 104.7 17.2 108 94-205 11-118 (166)
63 3hym_B Cell division cycle pro 99.6 3.9E-14 1.3E-18 118.7 15.6 126 75-204 172-306 (330)
64 3mkr_A Coatomer subunit epsilo 99.6 5.1E-14 1.8E-18 119.5 16.4 130 73-205 141-272 (291)
65 1elr_A TPR2A-domain of HOP; HO 99.6 4.5E-14 1.5E-18 102.5 13.8 104 93-200 1-111 (131)
66 3qky_A Outer membrane assembly 99.6 4.5E-14 1.6E-18 116.5 15.3 134 72-205 62-232 (261)
67 3upv_A Heat shock protein STI1 99.6 7.4E-14 2.5E-18 102.6 14.7 104 72-178 14-123 (126)
68 2ho1_A Type 4 fimbrial biogene 99.6 5.6E-14 1.9E-18 114.2 15.5 127 74-204 83-211 (252)
69 2c2l_A CHIP, carboxy terminus 99.6 1.4E-14 4.7E-19 122.2 12.1 106 93-202 1-106 (281)
70 2r5s_A Uncharacterized protein 99.6 1.9E-14 6.6E-19 112.4 12.0 127 72-203 16-143 (176)
71 1fch_A Peroxisomal targeting s 99.6 5.7E-14 1.9E-18 120.0 15.8 123 75-201 194-318 (368)
72 3u4t_A TPR repeat-containing p 99.6 1.9E-14 6.6E-19 118.0 12.4 130 72-206 47-180 (272)
73 3hym_B Cell division cycle pro 99.6 7.1E-14 2.4E-18 117.0 15.2 130 73-206 67-197 (330)
74 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-13 4.3E-18 112.1 16.2 129 74-206 49-179 (252)
75 1zu2_A Mitochondrial import re 99.6 7.9E-15 2.7E-19 114.3 8.6 92 110-204 16-127 (158)
76 2vq2_A PILW, putative fimbrial 99.6 9E-14 3.1E-18 110.1 14.9 131 72-206 52-186 (225)
77 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-13 4.4E-18 119.3 16.8 122 72-197 157-294 (336)
78 2yhc_A BAMD, UPF0169 lipoprote 99.6 7.8E-14 2.7E-18 113.2 14.3 129 73-202 15-181 (225)
79 3ieg_A DNAJ homolog subfamily 99.6 1.9E-13 6.4E-18 115.4 16.9 126 75-204 16-156 (359)
80 2vgx_A Chaperone SYCD; alterna 99.5 1.5E-13 5E-18 105.2 14.5 96 72-170 31-126 (148)
81 3sz7_A HSC70 cochaperone (SGT) 99.5 1.2E-13 4.1E-18 106.4 13.8 105 72-179 21-125 (164)
82 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.8E-13 2.7E-17 108.2 19.6 128 72-204 53-180 (275)
83 3u4t_A TPR repeat-containing p 99.5 7E-14 2.4E-18 114.7 13.2 133 73-207 14-147 (272)
84 3mkr_A Coatomer subunit epsilo 99.5 2.1E-13 7.1E-18 115.7 16.4 130 93-226 127-263 (291)
85 2xcb_A PCRH, regulatory protei 99.5 1.3E-13 4.5E-18 104.0 13.5 98 72-172 28-125 (142)
86 3cv0_A Peroxisome targeting si 99.5 1.8E-13 6.3E-18 114.4 15.7 121 77-201 153-273 (327)
87 1wao_1 Serine/threonine protei 99.5 1.8E-14 6.1E-19 130.7 10.1 131 73-207 17-160 (477)
88 1fch_A Peroxisomal targeting s 99.5 5.2E-13 1.8E-17 114.0 18.3 86 73-161 75-160 (368)
89 3k9i_A BH0479 protein; putativ 99.5 7.7E-14 2.6E-18 101.9 11.2 95 77-174 5-102 (117)
90 3k9i_A BH0479 protein; putativ 99.5 9.5E-15 3.3E-19 106.7 5.7 94 108-205 2-98 (117)
91 2if4_A ATFKBP42; FKBP-like, al 99.5 2.3E-14 7.9E-19 124.2 8.9 127 74-203 191-334 (338)
92 1zu2_A Mitochondrial import re 99.5 4.9E-14 1.7E-18 109.8 9.8 96 74-172 14-130 (158)
93 1hxi_A PEX5, peroxisome target 99.5 7.6E-14 2.6E-18 103.2 10.4 92 72-166 27-118 (121)
94 3rkv_A Putative peptidylprolyl 99.5 8.5E-14 2.9E-18 107.0 10.1 105 72-179 21-144 (162)
95 3fp2_A TPR repeat-containing p 99.5 3.2E-13 1.1E-17 121.0 15.3 127 74-204 288-414 (537)
96 2lni_A Stress-induced-phosphop 99.5 5.6E-13 1.9E-17 97.2 13.9 106 73-181 27-132 (133)
97 2xpi_A Anaphase-promoting comp 99.5 4.9E-13 1.7E-17 121.7 16.2 128 73-204 418-552 (597)
98 2ond_A Cleavage stimulation fa 99.5 3.9E-13 1.3E-17 114.1 14.2 117 81-201 35-167 (308)
99 1qqe_A Vesicular transport pro 99.5 2.7E-13 9.3E-18 114.4 12.9 131 73-204 88-235 (292)
100 2vyi_A SGTA protein; chaperone 99.5 1.8E-12 6.2E-17 93.7 15.4 106 73-181 23-128 (131)
101 2y4t_A DNAJ homolog subfamily 99.5 8.6E-13 3E-17 115.8 16.3 130 73-206 37-181 (450)
102 2yhc_A BAMD, UPF0169 lipoprote 99.5 9.5E-13 3.3E-17 106.7 15.2 134 72-206 51-222 (225)
103 3ieg_A DNAJ homolog subfamily 99.5 1.8E-12 6.2E-17 109.3 17.4 128 73-204 82-224 (359)
104 2if4_A ATFKBP42; FKBP-like, al 99.5 5.1E-14 1.8E-18 122.0 7.8 113 90-206 173-302 (338)
105 2y4t_A DNAJ homolog subfamily 99.5 1.6E-12 5.3E-17 114.1 17.4 133 72-205 221-366 (450)
106 2hr2_A Hypothetical protein; a 99.5 1.8E-13 6E-18 106.8 10.0 93 73-168 22-137 (159)
107 2fbn_A 70 kDa peptidylprolyl i 99.5 8.7E-13 3E-17 104.5 14.3 123 72-198 48-187 (198)
108 2ond_A Cleavage stimulation fa 99.5 8.4E-13 2.9E-17 112.0 15.1 124 79-204 81-205 (308)
109 1ihg_A Cyclophilin 40; ppiase 99.5 3.3E-13 1.1E-17 118.6 12.4 109 94-206 221-345 (370)
110 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 3.9E-17 94.8 13.3 106 97-206 2-107 (136)
111 1qqe_A Vesicular transport pro 99.5 1.2E-12 3.9E-17 110.6 15.2 132 72-204 47-194 (292)
112 4gcn_A Protein STI-1; structur 99.5 1.2E-12 3.9E-17 97.5 13.2 100 72-172 18-121 (127)
113 1wao_1 Serine/threonine protei 99.5 9.2E-14 3.2E-18 126.0 8.5 111 92-206 2-112 (477)
114 3fp2_A TPR repeat-containing p 99.5 1.2E-12 4E-17 117.3 15.0 130 72-206 253-382 (537)
115 2l6j_A TPR repeat-containing p 99.5 6.5E-14 2.2E-18 99.8 5.3 93 95-191 3-101 (111)
116 1na3_A Designed protein CTPR2; 99.4 2E-12 7E-17 88.7 12.8 85 93-180 6-90 (91)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.9E-12 9.9E-17 101.6 15.4 103 93-202 3-105 (213)
118 1elw_A TPR1-domain of HOP; HOP 99.4 3.2E-12 1.1E-16 90.9 14.0 101 73-176 15-115 (118)
119 3cv0_A Peroxisome targeting si 99.4 5.8E-13 2E-17 111.3 11.7 126 72-201 182-319 (327)
120 1na0_A Designed protein CTPR3; 99.4 6E-12 2E-16 90.2 15.4 105 73-180 20-124 (125)
121 2r5s_A Uncharacterized protein 99.4 1.3E-13 4.5E-18 107.6 6.9 111 92-206 2-112 (176)
122 2xpi_A Anaphase-promoting comp 99.4 2.8E-12 9.6E-17 116.6 15.9 126 76-205 353-478 (597)
123 2c2l_A CHIP, carboxy terminus 99.4 5.1E-13 1.7E-17 112.6 10.1 126 72-203 14-170 (281)
124 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.3E-12 4.6E-17 117.6 13.4 120 72-195 278-413 (457)
125 2gw1_A Mitochondrial precursor 99.4 1.8E-12 6E-17 115.2 14.1 125 76-203 318-450 (514)
126 2dba_A Smooth muscle cell asso 99.4 1.8E-11 6.2E-16 90.9 17.5 102 73-177 39-143 (148)
127 3q49_B STIP1 homology and U bo 99.4 3.2E-12 1.1E-16 94.4 13.0 104 72-178 19-127 (137)
128 2xev_A YBGF; tetratricopeptide 99.4 5.5E-12 1.9E-16 92.1 13.9 101 73-176 13-119 (129)
129 2kat_A Uncharacterized protein 99.4 3.3E-12 1.1E-16 92.4 12.5 82 80-164 3-84 (115)
130 2gw1_A Mitochondrial precursor 99.4 2E-12 7E-17 114.7 13.5 133 73-206 349-487 (514)
131 3ma5_A Tetratricopeptide repea 99.4 1.8E-12 6.2E-17 92.3 10.2 71 91-164 2-72 (100)
132 1ihg_A Cyclophilin 40; ppiase 99.4 9.3E-12 3.2E-16 109.3 14.8 114 72-189 233-362 (370)
133 3edt_B KLC 2, kinesin light ch 99.4 7.9E-12 2.7E-16 101.9 12.9 127 72-199 53-200 (283)
134 1dce_A Protein (RAB geranylger 99.4 7.3E-12 2.5E-16 116.0 13.8 128 78-208 89-232 (567)
135 1dce_A Protein (RAB geranylger 99.4 1.1E-11 3.7E-16 114.8 14.6 129 76-207 43-183 (567)
136 2kat_A Uncharacterized protein 99.3 2.9E-12 9.9E-17 92.7 8.5 93 113-209 2-94 (115)
137 3qou_A Protein YBBN; thioredox 99.3 4.3E-12 1.5E-16 107.1 10.5 120 73-196 162-283 (287)
138 3edt_B KLC 2, kinesin light ch 99.3 9.4E-12 3.2E-16 101.4 12.0 121 76-197 15-156 (283)
139 4g1t_A Interferon-induced prot 99.3 2.5E-11 8.7E-16 107.3 15.0 88 112-202 316-406 (472)
140 4g1t_A Interferon-induced prot 99.3 1.3E-11 4.6E-16 109.1 13.1 127 77-207 153-286 (472)
141 3nf1_A KLC 1, kinesin light ch 99.3 1E-11 3.6E-16 102.9 11.6 124 73-200 122-310 (311)
142 2e2e_A Formate-dependent nitri 99.3 7.5E-12 2.6E-16 97.0 10.0 98 106-206 20-119 (177)
143 1elr_A TPR2A-domain of HOP; HO 99.3 4.4E-11 1.5E-15 86.4 13.3 103 73-179 15-124 (131)
144 3u3w_A Transcriptional activat 99.3 1.1E-11 3.9E-16 104.1 11.1 138 76-213 129-282 (293)
145 3dra_A Protein farnesyltransfe 99.3 8.4E-11 2.9E-15 101.0 16.1 127 76-206 47-184 (306)
146 2kck_A TPR repeat; tetratricop 99.3 2.3E-11 7.7E-16 85.7 10.5 91 73-166 17-110 (112)
147 1ouv_A Conserved hypothetical 99.3 1.9E-10 6.4E-15 94.9 17.5 111 78-198 22-144 (273)
148 3gw4_A Uncharacterized protein 99.3 1E-10 3.5E-15 91.5 14.9 133 73-206 37-185 (203)
149 2ifu_A Gamma-SNAP; membrane fu 99.3 1.6E-11 5.6E-16 104.2 11.0 129 73-204 87-230 (307)
150 2kc7_A BFR218_protein; tetratr 99.3 9E-12 3.1E-16 87.4 7.7 94 99-203 3-96 (99)
151 3ulq_A Response regulator aspa 99.3 5.7E-11 2E-15 103.0 14.2 128 72-200 153-296 (383)
152 3ro3_A PINS homolog, G-protein 99.3 9E-11 3.1E-15 87.3 13.3 126 74-200 21-161 (164)
153 2qfc_A PLCR protein; TPR, HTH, 99.3 4.3E-11 1.5E-15 100.6 12.7 131 75-206 128-275 (293)
154 3dra_A Protein farnesyltransfe 99.3 1.1E-10 3.7E-15 100.3 15.1 130 73-206 78-224 (306)
155 3nf1_A KLC 1, kinesin light ch 99.3 8.6E-11 2.9E-15 97.3 13.9 128 72-200 79-227 (311)
156 3dss_A Geranylgeranyl transfer 99.3 1.8E-10 6.3E-15 99.9 16.4 125 79-206 91-231 (331)
157 4f3v_A ESX-1 secretion system 99.3 1.5E-11 5.2E-16 104.3 8.9 126 73-204 113-243 (282)
158 1ouv_A Conserved hypothetical 99.2 2E-10 7E-15 94.7 14.4 99 92-198 2-108 (273)
159 3ulq_A Response regulator aspa 99.2 7.3E-11 2.5E-15 102.4 12.1 124 73-197 114-253 (383)
160 3q15_A PSP28, response regulat 99.2 2.3E-10 7.9E-15 99.3 15.0 131 72-203 151-296 (378)
161 2ifu_A Gamma-SNAP; membrane fu 99.2 5.3E-11 1.8E-15 101.0 10.6 129 73-203 47-190 (307)
162 3ma5_A Tetratricopeptide repea 99.2 3.1E-11 1.1E-15 85.8 7.2 81 125-209 2-82 (100)
163 2ooe_A Cleavage stimulation fa 99.2 1.2E-10 4.3E-15 105.6 12.9 123 80-205 304-428 (530)
164 3dss_A Geranylgeranyl transfer 99.2 5.6E-10 1.9E-14 96.8 16.1 128 76-206 44-183 (331)
165 4a1s_A PINS, partner of inscut 99.2 1.3E-10 4.4E-15 100.8 11.9 125 72-200 58-215 (411)
166 3q7a_A Farnesyltransferase alp 99.2 3.3E-10 1.1E-14 98.9 14.0 128 75-206 67-205 (349)
167 3rjv_A Putative SEL1 repeat pr 99.2 2E-10 6.8E-15 92.5 11.3 114 76-197 32-158 (212)
168 3gw4_A Uncharacterized protein 99.2 7.9E-10 2.7E-14 86.3 14.2 109 90-202 19-141 (203)
169 2ooe_A Cleavage stimulation fa 99.2 3.4E-10 1.2E-14 102.7 13.4 122 80-205 256-393 (530)
170 2qfc_A PLCR protein; TPR, HTH, 99.2 1.6E-09 5.3E-14 91.0 16.4 127 73-200 86-228 (293)
171 3sf4_A G-protein-signaling mod 99.1 3.2E-10 1.1E-14 97.3 11.9 126 73-202 198-341 (406)
172 3ro3_A PINS homolog, G-protein 99.1 5.3E-10 1.8E-14 83.1 11.4 107 94-201 7-122 (164)
173 3ro2_A PINS homolog, G-protein 99.1 3.2E-10 1.1E-14 94.1 11.2 121 76-200 197-335 (338)
174 3ro2_A PINS homolog, G-protein 99.1 4.4E-10 1.5E-14 93.2 12.0 124 72-199 15-174 (338)
175 3rjv_A Putative SEL1 repeat pr 99.1 4.6E-10 1.6E-14 90.3 11.4 117 77-199 68-199 (212)
176 4a1s_A PINS, partner of inscut 99.1 2.7E-10 9.1E-15 98.8 10.7 131 72-203 233-378 (411)
177 3q15_A PSP28, response regulat 99.1 8.1E-10 2.8E-14 95.8 13.5 131 73-204 112-263 (378)
178 3sf4_A G-protein-signaling mod 99.1 4.3E-10 1.5E-14 96.5 11.3 125 72-200 19-179 (406)
179 3q7a_A Farnesyltransferase alp 99.1 4.8E-10 1.6E-14 97.8 10.9 130 74-206 100-246 (349)
180 3u3w_A Transcriptional activat 99.1 1.1E-09 3.6E-14 92.0 12.6 129 73-202 86-230 (293)
181 3n71_A Histone lysine methyltr 99.1 3.7E-09 1.3E-13 96.3 17.0 124 74-198 321-465 (490)
182 3bee_A Putative YFRE protein; 99.1 8.7E-10 3E-14 78.1 9.1 73 92-167 2-77 (93)
183 1hz4_A MALT regulatory protein 99.1 2.9E-09 9.9E-14 91.5 14.2 101 99-200 56-167 (373)
184 2l6j_A TPR repeat-containing p 99.0 8.2E-11 2.8E-15 83.4 3.1 84 73-159 15-104 (111)
185 1klx_A Cysteine rich protein B 99.0 1.4E-08 4.9E-13 76.4 14.1 111 78-199 11-128 (138)
186 1na3_A Designed protein CTPR2; 99.0 3E-09 1E-13 72.5 8.8 72 135-207 11-82 (91)
187 1hz4_A MALT regulatory protein 98.9 1.1E-08 3.6E-13 88.0 12.8 126 74-200 65-206 (373)
188 3u64_A Protein TP_0956; tetrat 98.9 3.4E-09 1.2E-13 89.8 8.8 112 90-204 146-277 (301)
189 2xm6_A Protein corresponding t 98.9 3.4E-08 1.1E-12 88.6 15.2 116 76-200 310-435 (490)
190 3bee_A Putative YFRE protein; 98.9 2.5E-08 8.5E-13 70.5 10.8 74 126-203 2-78 (93)
191 3e4b_A ALGK; tetratricopeptide 98.9 2E-08 6.8E-13 89.9 12.6 114 79-204 196-320 (452)
192 3e4b_A ALGK; tetratricopeptide 98.9 1.6E-08 5.6E-13 90.5 11.9 115 78-207 233-359 (452)
193 3n71_A Histone lysine methyltr 98.9 4.2E-08 1.4E-12 89.3 14.4 105 99-204 312-434 (490)
194 3ly7_A Transcriptional activat 98.8 2.1E-08 7E-13 87.9 11.6 129 78-211 215-353 (372)
195 2v5f_A Prolyl 4-hydroxylase su 98.8 4.3E-08 1.5E-12 70.2 11.4 76 96-174 5-87 (104)
196 2kc7_A BFR218_protein; tetratr 98.8 1.8E-08 6.1E-13 70.2 9.1 70 136-206 3-73 (99)
197 1pc2_A Mitochondria fission pr 98.8 2E-08 6.8E-13 77.4 9.7 82 86-170 22-108 (152)
198 3qww_A SET and MYND domain-con 98.8 6.2E-08 2.1E-12 86.8 13.9 101 103-204 305-423 (433)
199 4f3v_A ESX-1 secretion system 98.8 6.4E-10 2.2E-14 94.3 0.5 95 104-206 110-212 (282)
200 2xm6_A Protein corresponding t 98.8 2.1E-07 7.3E-12 83.4 16.6 113 76-197 57-180 (490)
201 1pc2_A Mitochondria fission pr 98.8 7.2E-08 2.5E-12 74.2 10.7 95 111-209 13-112 (152)
202 3qww_A SET and MYND domain-con 98.7 1.7E-07 5.7E-12 84.1 12.4 89 75-163 311-412 (433)
203 3qwp_A SET and MYND domain-con 98.7 3.3E-07 1.1E-11 82.0 14.2 105 99-204 290-412 (429)
204 3qwp_A SET and MYND domain-con 98.7 5.2E-07 1.8E-11 80.7 14.8 104 74-177 299-423 (429)
205 3u64_A Protein TP_0956; tetrat 98.6 2.7E-07 9.3E-12 78.2 10.5 84 79-165 180-272 (301)
206 1klx_A Cysteine rich protein B 98.5 1.9E-06 6.4E-11 64.6 12.0 88 78-174 41-136 (138)
207 3mv2_B Coatomer subunit epsilo 98.5 1.6E-06 5.5E-11 74.3 13.1 118 72-197 110-240 (310)
208 2v5f_A Prolyl 4-hydroxylase su 98.5 9.6E-07 3.3E-11 63.0 9.2 71 135-206 7-84 (104)
209 3mv2_B Coatomer subunit epsilo 98.4 1.6E-06 5.6E-11 74.3 11.2 117 81-200 85-210 (310)
210 4b4t_Q 26S proteasome regulato 98.4 2.9E-06 9.8E-11 73.8 11.8 66 135-201 137-208 (434)
211 4b4t_Q 26S proteasome regulato 98.2 8.9E-06 3.1E-10 70.6 11.7 120 76-199 109-247 (434)
212 1nzn_A CGI-135 protein, fissio 98.2 1.7E-05 5.8E-10 59.0 11.3 93 110-209 15-115 (126)
213 3ly7_A Transcriptional activat 98.2 4.2E-06 1.4E-10 73.3 7.8 75 90-168 271-345 (372)
214 1xi4_A Clathrin heavy chain; a 98.1 4.1E-05 1.4E-09 76.9 13.3 62 92-161 1101-1162(1630)
215 1b89_A Protein (clathrin heavy 98.0 4E-05 1.4E-09 68.7 10.2 116 97-224 123-266 (449)
216 1b89_A Protein (clathrin heavy 97.9 5.2E-06 1.8E-10 74.4 3.7 104 72-194 71-174 (449)
217 4e6h_A MRNA 3'-END-processing 97.9 0.00012 4.3E-09 68.9 13.1 111 83-197 330-463 (679)
218 1nzn_A CGI-135 protein, fissio 97.9 8.3E-05 2.9E-09 55.2 9.4 88 82-172 21-113 (126)
219 1xi4_A Clathrin heavy chain; a 97.8 0.00024 8.2E-09 71.5 14.4 115 95-224 1194-1339(1630)
220 4e6h_A MRNA 3'-END-processing 97.8 0.00019 6.4E-09 67.7 12.1 124 77-203 358-505 (679)
221 4h7y_A Dual specificity protei 97.6 0.00062 2.1E-08 52.0 10.0 111 91-203 8-129 (161)
222 2uy1_A Cleavage stimulation fa 97.5 0.0015 5.3E-08 59.0 14.2 117 82-203 199-355 (493)
223 3ffl_A Anaphase-promoting comp 97.4 0.0014 4.9E-08 50.7 9.7 78 96-177 63-165 (167)
224 1y8m_A FIS1; mitochondria, unk 97.4 0.0042 1.4E-07 46.9 12.0 77 93-171 36-115 (144)
225 3o48_A Mitochondria fission 1 97.3 0.0019 6.4E-08 48.2 9.2 74 95-171 39-116 (134)
226 1y8m_A FIS1; mitochondria, unk 97.1 0.015 5.3E-07 43.8 12.8 77 128-208 37-117 (144)
227 3ffl_A Anaphase-promoting comp 97.1 0.006 2E-07 47.2 10.6 95 98-193 22-147 (167)
228 3o48_A Mitochondria fission 1 97.1 0.0055 1.9E-07 45.7 9.9 74 135-209 42-119 (134)
229 4g26_A Pentatricopeptide repea 96.5 0.14 4.7E-06 46.3 16.5 98 95-197 104-204 (501)
230 1ya0_A SMG-7 transcript varian 96.4 0.027 9.1E-07 51.1 11.2 79 98-179 154-232 (497)
231 2ff4_A Probable regulatory pro 96.4 0.057 1.9E-06 47.1 12.9 96 100-196 119-233 (388)
232 4gns_B Protein CSD3, chitin bi 95.8 0.035 1.2E-06 52.8 9.3 59 98-159 339-397 (754)
233 2ff4_A Probable regulatory pro 95.6 0.051 1.8E-06 47.4 9.1 61 99-162 174-234 (388)
234 2uy1_A Cleavage stimulation fa 95.6 0.084 2.9E-06 47.5 10.7 92 97-194 287-380 (493)
235 1zbp_A Hypothetical protein VP 95.5 0.22 7.4E-06 41.4 12.0 118 73-202 8-134 (273)
236 3kae_A CDC27, possible protein 95.5 0.3 1E-05 38.2 11.7 104 93-204 30-150 (242)
237 1zbp_A Hypothetical protein VP 94.6 0.51 1.7E-05 39.2 11.6 58 105-165 6-63 (273)
238 4g26_A Pentatricopeptide repea 94.4 1.8 6E-05 38.9 15.8 118 75-198 39-170 (501)
239 4b4t_R RPN7, 26S proteasome re 93.9 0.2 6.7E-06 44.3 8.3 102 96-198 131-238 (429)
240 3mkq_B Coatomer subunit alpha; 93.5 1.4 4.6E-05 34.3 11.5 46 72-122 15-60 (177)
241 3txn_A 26S proteasome regulato 93.2 0.95 3.2E-05 39.6 11.4 98 100-197 103-210 (394)
242 4h7y_A Dual specificity protei 92.9 0.44 1.5E-05 36.3 7.6 69 96-168 61-129 (161)
243 3mkq_A Coatomer beta'-subunit; 92.9 1.3 4.5E-05 41.0 12.6 29 94-122 679-707 (814)
244 3spa_A Mtrpol, DNA-directed RN 92.8 1.2 4.1E-05 43.9 12.3 97 97-198 128-231 (1134)
245 3mkq_A Coatomer beta'-subunit; 92.4 0.57 1.9E-05 43.5 9.5 46 106-159 662-707 (814)
246 3kae_A CDC27, possible protein 90.3 3.2 0.00011 32.5 10.0 71 95-167 61-148 (242)
247 4gns_B Protein CSD3, chitin bi 90.3 3.8 0.00013 38.9 12.7 114 79-194 266-397 (754)
248 1ya0_A SMG-7 transcript varian 89.9 0.82 2.8E-05 41.3 7.5 66 77-145 167-232 (497)
249 4b4t_P 26S proteasome regulato 89.6 9 0.00031 33.7 14.0 101 95-197 136-247 (445)
250 3txn_A 26S proteasome regulato 87.5 8.6 0.00029 33.5 12.2 60 138-198 104-169 (394)
251 4fhn_B Nucleoporin NUP120; pro 80.2 9.3 0.00032 37.8 10.3 98 92-191 838-961 (1139)
252 2ijq_A Hypothetical protein; s 79.7 7.6 0.00026 29.5 7.4 69 99-167 35-109 (161)
253 1qsa_A Protein (soluble lytic 79.4 7.4 0.00025 36.0 8.7 59 98-160 288-346 (618)
254 2crb_A Nuclear receptor bindin 77.2 4.9 0.00017 27.7 5.0 28 96-123 15-42 (97)
255 1qsa_A Protein (soluble lytic 76.0 29 0.00098 32.0 11.6 83 109-196 265-347 (618)
256 2w2u_A Hypothetical P60 katani 75.5 5.5 0.00019 26.7 5.0 27 98-124 21-47 (83)
257 4gq2_M Nucleoporin NUP120; bet 74.6 22 0.00074 34.5 10.9 23 176-198 905-927 (950)
258 3mkq_B Coatomer subunit alpha; 73.5 29 0.00098 26.7 11.2 54 95-159 7-60 (177)
259 3ax2_A Mitochondrial import re 72.3 9.8 0.00033 24.9 5.4 32 100-131 21-52 (73)
260 2v6y_A AAA family ATPase, P60 72.3 7.4 0.00025 26.0 5.0 26 99-124 14-39 (83)
261 4b4t_R RPN7, 26S proteasome re 71.9 4.5 0.00015 35.4 4.9 64 135-199 133-199 (429)
262 4b4t_S RPN3, 26S proteasome re 71.0 8 0.00027 35.1 6.3 109 90-203 175-305 (523)
263 2v6x_A Vacuolar protein sortin 68.0 10 0.00035 25.2 5.0 27 98-124 15-41 (85)
264 1wy6_A Hypothetical protein ST 67.8 32 0.0011 25.8 8.0 52 144-196 102-153 (172)
265 1wfd_A Hypothetical protein 15 67.0 11 0.00037 25.7 5.0 26 99-124 18-43 (93)
266 4a5x_A MITD1, MIT domain-conta 63.7 14 0.00049 24.7 5.1 26 99-124 19-44 (86)
267 2cwy_A Hypothetical protein TT 62.9 26 0.00088 23.9 6.3 65 100-166 5-72 (94)
268 3t5x_A PCI domain-containing p 62.3 22 0.00075 27.7 6.7 35 97-131 15-49 (203)
269 2cfu_A SDSA1; SDS-hydrolase, l 62.3 14 0.00049 34.3 6.4 48 98-148 451-498 (658)
270 2cpt_A SKD1 protein, vacuolar 61.8 12 0.00042 26.7 4.7 26 99-124 21-46 (117)
271 1om2_A Protein (mitochondrial 61.3 9.9 0.00034 26.2 3.9 31 100-130 24-54 (95)
272 3spa_A Mtrpol, DNA-directed RN 57.8 57 0.002 32.3 9.8 98 95-203 164-264 (1134)
273 2rpa_A Katanin P60 ATPase-cont 57.1 11 0.00036 25.1 3.3 26 99-124 15-40 (78)
274 4fhn_B Nucleoporin NUP120; pro 55.6 46 0.0016 32.8 9.1 94 102-202 818-933 (1139)
275 4b4t_S RPN3, 26S proteasome re 55.6 18 0.00062 32.7 5.7 68 96-166 231-303 (523)
276 2crb_A Nuclear receptor bindin 53.9 24 0.00082 24.2 4.7 25 136-160 18-42 (97)
277 4gq2_M Nucleoporin NUP120; bet 51.8 97 0.0033 29.9 10.6 29 94-122 838-866 (950)
278 2w2u_A Hypothetical P60 katani 51.8 22 0.00075 23.6 4.3 25 136-160 22-46 (83)
279 3esl_A Checkpoint serine/threo 51.5 85 0.0029 24.6 8.7 70 90-161 74-143 (202)
280 2v6y_A AAA family ATPase, P60 48.6 26 0.00089 23.2 4.3 24 137-160 15-38 (83)
281 2dl1_A Spartin; SPG20, MIT, st 44.7 35 0.0012 24.3 4.7 34 90-123 16-49 (116)
282 2dl1_A Spartin; SPG20, MIT, st 41.8 38 0.0013 24.1 4.5 27 135-161 24-50 (116)
283 3ax2_A Mitochondrial import re 41.6 70 0.0024 20.7 5.7 29 136-164 20-48 (73)
284 4a5x_A MITD1, MIT domain-conta 41.5 39 0.0013 22.5 4.3 26 136-161 19-44 (86)
285 2o8p_A 14-3-3 domain containin 41.1 98 0.0034 24.7 7.3 52 145-196 137-196 (227)
286 3t5x_A PCI domain-containing p 40.3 44 0.0015 25.9 5.2 39 127-166 9-47 (203)
287 2rpa_A Katanin P60 ATPase-cont 40.0 30 0.001 22.8 3.4 29 136-164 15-43 (78)
288 2e2a_A Protein (enzyme IIA); h 38.6 49 0.0017 23.1 4.6 32 92-123 16-47 (105)
289 1wcr_A PTS system, N, N'-diace 38.2 50 0.0017 22.9 4.6 32 92-123 14-45 (103)
290 1wfd_A Hypothetical protein 15 38.2 46 0.0016 22.5 4.3 25 137-161 19-43 (93)
291 3re2_A Predicted protein; meni 38.1 1.6E+02 0.0054 25.6 8.4 72 94-165 253-328 (472)
292 3t5v_B Nuclear mRNA export pro 37.2 39 0.0013 29.9 4.8 65 101-166 181-254 (455)
293 1wy6_A Hypothetical protein ST 37.2 1.3E+02 0.0044 22.5 8.4 58 99-159 93-151 (172)
294 2p58_C Putative type III secre 37.1 1.1E+02 0.0036 21.5 9.4 81 101-191 12-92 (116)
295 2v6x_A Vacuolar protein sortin 36.0 53 0.0018 21.5 4.3 25 137-161 17-41 (85)
296 2vkj_A TM1634; membrane protei 35.3 99 0.0034 21.1 5.4 32 94-125 51-82 (106)
297 3k1s_A PTS system, cellobiose- 34.8 60 0.002 22.8 4.6 31 92-122 18-48 (109)
298 2uwj_G Type III export protein 33.7 1.2E+02 0.0042 21.2 8.5 54 102-159 12-65 (115)
299 2cpt_A SKD1 protein, vacuolar 32.5 51 0.0018 23.3 4.0 24 138-161 23-46 (117)
300 3lew_A SUSD-like carbohydrate 32.5 1.3E+02 0.0044 26.5 7.5 49 113-161 175-231 (495)
301 3l8r_A PTCA, putative PTS syst 32.4 68 0.0023 22.9 4.6 31 92-122 33-63 (120)
302 2wvi_A Mitotic checkpoint seri 32.2 1.4E+02 0.0048 22.4 6.6 65 90-161 60-124 (164)
303 2vh3_A Ranasmurfin, RSF-1; LTQ 31.5 66 0.0022 21.4 4.0 42 182-226 47-88 (113)
304 3u84_A Menin; MLL, JUND, ledgf 31.0 2.2E+02 0.0076 25.2 8.3 70 95-164 276-349 (550)
305 4b4t_P 26S proteasome regulato 30.7 1.9E+02 0.0064 25.1 8.2 66 96-161 177-246 (445)
306 2br9_A 14-3-3E, 14-3-3 protein 30.2 1.9E+02 0.0065 23.0 7.4 47 113-159 147-199 (234)
307 3t5v_B Nuclear mRNA export pro 29.6 52 0.0018 29.1 4.3 92 109-201 139-254 (455)
308 2npm_A 14-3-3 domain containin 29.3 2E+02 0.0067 23.4 7.4 47 113-159 173-224 (260)
309 2yhe_A SEC-alkyl sulfatase; hy 35.4 12 0.00039 35.1 0.0 50 99-151 464-513 (668)
310 2npm_A 14-3-3 domain containin 28.7 1.7E+02 0.0057 23.8 6.9 47 150-196 173-226 (260)
311 1om2_A Protein (mitochondrial 28.5 1E+02 0.0034 21.1 4.7 29 136-164 23-51 (95)
312 4a1g_A Mitotic checkpoint seri 28.3 98 0.0033 23.0 5.1 44 115-159 84-127 (152)
313 3myv_A SUSD superfamily protei 28.0 1.5E+02 0.0052 25.6 7.2 48 113-160 165-217 (454)
314 3epo_A Thiamine biosynthesis p 27.3 14 0.00049 33.5 0.3 16 1-16 472-487 (612)
315 2cfu_A SDSA1; SDS-hydrolase, l 26.9 1.5E+02 0.0052 27.3 7.2 47 135-181 451-497 (658)
316 4a1g_A Mitotic checkpoint seri 26.3 1.1E+02 0.0037 22.7 5.0 41 90-130 95-135 (152)
317 4gq4_A Menin; tumor suppressor 25.8 3.2E+02 0.011 24.1 8.4 68 95-164 261-334 (489)
318 3eab_A Spastin; spastin, MIT, 25.4 46 0.0016 22.5 2.5 12 110-121 33-44 (89)
319 3kez_A Putative sugar binding 24.3 2E+02 0.0067 25.0 7.1 48 113-160 171-223 (461)
320 3efz_A 14-3-3 protein; 14-3-3, 24.1 1.2E+02 0.0042 24.8 5.3 48 150-197 169-226 (268)
321 2ijq_A Hypothetical protein; s 24.1 2.3E+02 0.0078 21.2 8.1 62 136-197 35-104 (161)
322 4aez_C MAD3, mitotic spindle c 24.0 1.9E+02 0.0065 22.9 6.3 66 90-162 114-179 (223)
323 3re2_A Predicted protein; meni 23.8 1.3E+02 0.0044 26.1 5.4 73 109-197 251-325 (472)
324 2br9_A 14-3-3E, 14-3-3 protein 23.7 1.8E+02 0.0063 23.1 6.2 47 150-196 147-201 (234)
325 3iqu_A 14-3-3 protein sigma; s 22.7 2E+02 0.0069 22.9 6.3 46 150-195 150-203 (236)
326 2wvi_A Mitotic checkpoint seri 22.2 1.4E+02 0.0048 22.4 5.0 41 90-130 90-130 (164)
327 1o9d_A 14-3-3-like protein C; 21.4 2.1E+02 0.0073 23.2 6.2 45 151-195 153-205 (260)
328 2ak0_A Alpha-conotoxin MII; al 21.2 16 0.00053 18.2 -0.4 10 3-12 2-11 (26)
329 4fm3_A Uncharacterized hypothe 20.8 1.9E+02 0.0065 19.8 4.9 28 96-123 34-61 (98)
330 3esl_A Checkpoint serine/threo 20.6 1.5E+02 0.0052 23.1 5.0 41 90-130 109-149 (202)
331 3uzd_A 14-3-3 protein gamma; s 20.3 2.4E+02 0.0081 22.7 6.2 46 150-195 148-201 (248)
332 3mcx_A SUSD superfamily protei 20.2 1.9E+02 0.0066 25.1 6.3 26 135-160 204-229 (477)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=4e-21 Score=144.00 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=108.4
Q ss_pred HHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 88 AVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 88 al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
+..+||+.++++.++|+.+++.|+|++|+..|+++++++|+++. +++++|.++..+|++++|+..|++++...|.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 45689999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++++.+|.++..+ |++++|++.|+++++++|++.+++.
T Consensus 82 ~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 82 KGYIRKAACLVAM-REWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999885 5999999999999999999988654
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=3.6e-20 Score=143.72 Aligned_cols=113 Identities=10% Similarity=-0.108 Sum_probs=107.5
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 86 SAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 86 ~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
..+++++|+++.+++++|.++.+.|++++|+..|+++++++|+++. +|+++|.++..+|++++|+..|++++...|.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3456899999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 166 YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 166 ~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
++++++++|.++..+ |++++|+..|+++++++|+..
T Consensus 103 ~~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999984 599999999999999999765
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=1.3e-19 Score=139.29 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+.++..+..++..+|+++..++++|.+|.+.|+|++|+..|+++++++|+++. +++++|.++..+|++++|+..|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---AHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCchHHHHHHHH
Confidence 466778888899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchhhhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAEN-QFTIATLLDPHYTDLSYVK 208 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~-~~~~al~l~P~~~~~~~~~ 208 (228)
+++...|.++++++.+|.++...+ ++++|.. +++++++++|+++.++...
T Consensus 90 ~al~~~p~~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 90 RSVELNPTQKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 999999999999999999998865 6666655 4699999999998875543
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=4.6e-19 Score=168.55 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=135.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..++|+..++++++++|+++.+++++|.++.++|++++|+..|+++++++|++.. +++|+|.++..+|++++
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---AYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence 456788999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCChhHHHHHHHhhc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPPSLVSSLRHFIT 226 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 226 (228)
|++.|++++...|.+++++.++|.++.. .|++++|++.|+++++++|++..++. ...+.+|.++ ++.++++++
T Consensus 96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A-~~~~~kal~ 173 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY-DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH-HHHHHHHHH
Confidence 9999999999999999999999999988 56999999999999999999998755 3555667653 444555543
No 5
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.81 E-value=6.2e-19 Score=135.47 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=110.5
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
+.++++.+|++..+++++|.++...|++++|+..|+++++++|+++. +++++|.++..+|++++|+..|++++...|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56788999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.++.+++++|.++... |++++|+..|+++++++|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999884 68999999999999999987765
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.9e-18 Score=139.19 Aligned_cols=130 Identities=19% Similarity=0.150 Sum_probs=115.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI-----------GDFNKALQYFTLVVENYKDFAFSEYARVGRA 140 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-----------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la 140 (228)
....+..+.|+..+.++++.+|+++.+++++|.++..+ |++++|+..|+++++++|++.. +++++|
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~lg 125 (217)
T 2pl2_A 49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---LHLQRG 125 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---HHHHHH
Confidence 44567778888888889999999999999999999999 9999999999999999999998 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++..+|++++|+..|++++... .+++++.++|.++... |++++|+..|+++++++|++...++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~~~~~ 189 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYAKALEQAPKDLDLRV 189 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999998888 8889999999988884 5889999999999999999887655
No 7
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.9e-18 Score=139.34 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=115.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLE----------------KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR 136 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~----------------lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~ 136 (228)
...+..+.|+..+..+++.+|+++.+++. +|.++...|++++|+..|+++++++|++.. ++
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 91 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD---CL 91 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HH
Confidence 45577889999999999999999999999 999999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----------------------------------C
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK----------------------------------H 182 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~----------------------------------~ 182 (228)
+++|.++..+|++++|+..|++++...|.++++++++|.+++..+ |
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988765432 3
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 027087 183 ALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 183 ~~~~A~~~~~~al~l~P~~~ 202 (228)
++++|+..|+++++++|+..
T Consensus 172 ~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 172 RYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp THHHHHHHHHHHTTTSCCHH
T ss_pred CHHHHHHHHHHHHHhCCCHH
Confidence 57889999999999999754
No 8
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=2e-18 Score=130.80 Aligned_cols=118 Identities=15% Similarity=-0.005 Sum_probs=109.6
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 85 ASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 85 ~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
+..+++.+|++...++++|.++...|++++|+..|++++.++|++.. +++++|.++..+|++++|+..|++++...|
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---YFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34567889999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 165 GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 165 ~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++.+++.+|.++... |++++|+..|+++++++|+++....
T Consensus 84 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999884 6999999999999999998877543
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=4.2e-18 Score=150.80 Aligned_cols=151 Identities=10% Similarity=-0.006 Sum_probs=132.4
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD-FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~-~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
...+..+.|+..+..+++++|++..+|+++|.++..+|+ +++|+..|+++++++|++.. +|+++|.++..+|++++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCTT
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHccCHHH
Confidence 445668889999999999999999999999999999997 99999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh-----hcCCC-ChhH----HHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK-----DTKHW-PPSL----VSSL 221 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-----~~~~~-~~~~----~~~~ 221 (228)
|+..|++++...|.++.+++++|.++..+ |++++|+..|+++|+++|++..+++.. .+... .+++ +..+
T Consensus 185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~ 263 (382)
T 2h6f_A 185 ELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 263 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 99999999999999999999999999985 488999999999999999999876532 21233 4444 4566
Q ss_pred HHhhcc
Q 027087 222 RHFITL 227 (228)
Q Consensus 222 ~~~~~~ 227 (228)
+++|++
T Consensus 264 ~~Al~l 269 (382)
T 2h6f_A 264 LEMIKL 269 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 10
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=7.7e-18 Score=136.66 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=121.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc------
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV------ 146 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~------ 146 (228)
.+.+..+.|+..+.++++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHTCSS
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhhhhhhh
Confidence 45567889999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 147 -----GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 147 -----g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|++++|+..|++++...|.+++++..+|.++.. .|++++|+..|+++++++ ++...++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-LGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcc-cchHHHH
Confidence 999999999999999999999999999999988 569999999999999999 7776554
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.77 E-value=1.1e-17 Score=129.36 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=109.1
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
.++.++..++.+|.++...|+|++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...|.++.++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 36778999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcC
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTK 211 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~ 211 (228)
+.+|.+++.+ |++++|+..|+++++++|++...++...+.
T Consensus 83 ~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 83 SRLGLARFDM-ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999884 699999999999999999999977665533
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.75 E-value=1.4e-17 Score=124.45 Aligned_cols=105 Identities=15% Similarity=0.028 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP----- 167 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p----- 167 (228)
++.+.++.++|++++++|+|++|+..|+++++++|++.. +++|+|.+|..+|++++|+..|++++...|.++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 466788999999999999999999999999999999999 999999999999999999999999988777553
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 168 --EVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.++..+|.++.. .|++++|++.|+++++.+|+.
T Consensus 82 ~a~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQK-QNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcCH
Confidence 467788888877 469999999999999998864
No 13
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=1.8e-17 Score=157.66 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=116.0
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
..|+++++++++|.++.++|++++|++.|+++++++|++.. +++|+|.+|.++|++++|+..|++++...|.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 36999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhcc
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFITL 227 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 227 (228)
+++|.++..+ |++++|++.|+++++++|++.+++.. ....++ +..+..+++++++
T Consensus 81 ~nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-~eAi~~~~~Al~l 140 (723)
T 4gyw_A 81 SNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-PEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 9999999884 69999999999999999999987653 222233 3445666766654
No 14
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=1.6e-16 Score=124.14 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=118.7
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+..+.++++++|+++.+++++|.++...|++++|+..+++++..+|++.. ++.++|.++...+++++|
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---AYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---HHHHHHHHHHHcCCHHHH
Confidence 44567788888889999999999999999999999999999999999999998888888 888888888888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhcc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFITL 227 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 227 (228)
+..+++++...|.+++++..+|.++.. .|++++|++.|+++++++|++..+++. ....++ +..+..+++++++
T Consensus 93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~ 170 (184)
T 3vtx_A 93 IDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH-HHHHHHHHHHHhC
Confidence 888888888888888888888888877 457888888888888888888776552 222222 2345556665543
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.6e-17 Score=121.38 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
|.++..++++|..+...|+|++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...|.++.+++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 567889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
+|.++..+ |++++|+..|+++++++
T Consensus 78 lg~~~~~~-~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 78 KATAQIAV-KEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCHHHHHHHHHHHHHhC
Confidence 99999884 68999999999999999
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1.7e-17 Score=146.81 Aligned_cols=133 Identities=9% Similarity=-0.033 Sum_probs=122.8
Q ss_pred HhhCCC-chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 72 AATYDP-LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 72 a~~~~~-~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
....+. .+.++..+.++++++|+++.+|+++|.++..+|++++|+..|+++++++|++.. +|+++|.++..+|+++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~---a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH---AWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH---HHHHHHHHHHHcCChH
Confidence 345565 889999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHhcCCCCCchhhh
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA-----ENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A-----~~~~~~al~l~P~~~~~~~~ 207 (228)
+|+..|++++...|.++.+++++|.++..++|.+++| ++.|+++++++|++..+++.
T Consensus 218 eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~ 279 (382)
T 2h6f_A 218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 279 (382)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999998866665777 59999999999999887553
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.72 E-value=1e-16 Score=118.86 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
.++.+|..+.+.|++++|+..|+++++++|++.. +++++|.++...|++++|+..|++++...|.+++++..+|.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 178 YVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 178 ~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
... |++++|+..|+++++++|++..
T Consensus 96 ~~~-g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNE-HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHH-HHHHHHHHHHHHHHC-------
T ss_pred HHc-CCHHHHHHHHHHHHHhCcCCCC
Confidence 885 5899999999999999998764
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=3.3e-16 Score=122.31 Aligned_cols=127 Identities=15% Similarity=0.030 Sum_probs=119.3
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.++..+..++..+|++..++..+|.++...++++.|+..++++++++|++.. ++..+|.++..+|++++
T Consensus 49 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 49 YMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYAD---AYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHhCCchh
Confidence 345677788888889999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
|++.|++++...|.+++++.++|.++.. .|++++|++.|+++++++|+++
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999988 4689999999999999999764
No 19
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=7.3e-17 Score=125.99 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---------SEYARVGRALALYEVGDREEAIAEMEDVSIS--- 162 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--- 162 (228)
.+..++++|+.+...|+|++|+..|+++++++|+++. ..-+|+|+|.++..+|+|++|+.+|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5667899999999999999999999999999999421 0117999999999999999999999999999
Q ss_pred ----cCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 163 ----LKGYPEVH----AALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 163 ----~~~~p~~~----~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.|.++.+| +++|.++..+ |++++|+..|+++++++|++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHHH
Confidence 89899999 9999999995 59999999999999999998774
No 20
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=2.3e-16 Score=127.50 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=120.3
Q ss_pred HhhCCCchHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
....+..+.|+..+..+++.+| .+..+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|+++
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---AYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---HHHHHHHHHHHTTCHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---HHHHHHHHHHHcccHH
Confidence 3456778899999999999999 89999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhh
Q 027087 151 EAIAEMEDVSISLKGYP-------EVHAALAAALYVDKHALLLAENQFTIATLLDPH--YTDLSY 206 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p-------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~--~~~~~~ 206 (228)
+|+..|++++...|.++ +++..+|.++.. .|++++|+..|+++++++|+ +..+++
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 99999999999999998 668888998888 46999999999999999999 766544
No 21
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=3.1e-16 Score=117.15 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=97.5
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+.|+..+..+++++|+++.+++++|.++..+|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK---GYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHCCCHHH
Confidence 456677899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
|+..|++++...|.+++++..++.++
T Consensus 100 A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 100 AQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999888754
No 22
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=4.6e-16 Score=121.06 Aligned_cols=126 Identities=9% Similarity=0.026 Sum_probs=114.9
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHHcCCH--HHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALA-LYEVGDR--EEA 152 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~-~~~~g~~--~~A 152 (228)
+..+.++..+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++.. +++++|.+ +...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---LYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---HHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhcCCcchHHH
Confidence 34556677788899999999999999999999999999999999999999999999 99999999 8899999 999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+..|++++...|.++.+++.+|.+++. .|++++|+..|+++++++|++....
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFM-QANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999988 4699999999999999999987643
No 23
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=4.6e-16 Score=125.71 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=119.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-------FSEYARVGRALALY 144 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------~~~~a~~~la~~~~ 144 (228)
....+..+.|+..+..+++.+|++..+++++|.++..+|++++|+..|+++++++|++. . +++++|.++.
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~---~~~~~g~~~~ 128 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI---YYLKEGQKFQ 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH---HHHHHhHHHH
Confidence 45667788999999999999999999999999999999999999999999999999998 5 6999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHH
Q 027087 145 EVGDREEAIAEMEDVSISLKG--YPEVHAALAAALYVDKHAL---------------------------LLAENQFTIAT 195 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~---------------------------~~A~~~~~~al 195 (228)
.+|++++|+..|++++...|. +++++.++|.+++..+ +. ++|+..|++++
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887788 7889999999988855 55 89999999999
Q ss_pred hcCCCCCchhh
Q 027087 196 LLDPHYTDLSY 206 (228)
Q Consensus 196 ~l~P~~~~~~~ 206 (228)
+++|++..+..
T Consensus 208 ~l~p~~~~~~~ 218 (228)
T 4i17_A 208 TLSPNRTEIKQ 218 (228)
T ss_dssp HHCTTCHHHHH
T ss_pred hcCCCCHHHHH
Confidence 99999987644
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.68 E-value=6.6e-16 Score=114.57 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=100.7
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
.++.++..++.+|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...|.++.++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 46788999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
+.+|.++... |++++|+..|+++++++|+.
T Consensus 81 ~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 81 FFLGQCQLEM-ESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHChhH
Confidence 9999999884 68999999999999999983
No 25
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.68 E-value=1.1e-16 Score=150.97 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=123.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+.+..+.|+..+.++++.+|+++.+++++|.++..+|++++|++.|+++++++|++.. +++++|.++.++|++++
T Consensus 444 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 444 LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---PKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHHTCCCT-
T ss_pred HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCChHH-
Confidence 34566778888888999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDT 210 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~ 210 (228)
+..|++++...|.++++++++|.++.. .|++++|++.|+++++++|++..+++....
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHH
Confidence 999999999999999999999999988 468999999999999999999988765443
No 26
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=7.3e-16 Score=124.11 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH----------------HHHHHHHcCCHHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG----------------RALALYEVGDREEAIAEMED 158 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~----------------la~~~~~~g~~~~A~~~~~~ 158 (228)
++..++..|..+...|++++|+..|+++++++|+++. ++++ +|.++..+|++++|+..|++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5677899999999999999999999999999999999 8999 99999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 159 VSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 159 al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
++...|.+++++..+|.++... |++++|+..|+++++++|++..+++.
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~ 127 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIF 127 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999885 58999999999999999999987653
No 27
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.66 E-value=6.8e-17 Score=124.01 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=103.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087 101 EKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 101 ~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~ 180 (228)
++|.++..+|++++|++.|++++..+|+++. +++++|.+|+++|++++|+..|++++...|.+++++..+|.++..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 77 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL- 77 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT---THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 4789999999999999999999999999998 899999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhh-----hhhcCCCChhHHHHHHHhhcc
Q 027087 181 KHALLLAENQFTIATLLDPHYTDLSY-----VKDTKHWPPSLVSSLRHFITL 227 (228)
Q Consensus 181 ~~~~~~A~~~~~~al~l~P~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 227 (228)
.|++++|+..|+++++++|++.++++ .....++.++...-+++++++
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 46999999999999999999998755 334456665544444666543
No 28
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.66 E-value=5.4e-16 Score=110.00 Aligned_cols=108 Identities=20% Similarity=0.125 Sum_probs=101.8
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPE 168 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~ 168 (228)
++|+++..++.+|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...+. ++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence 36888899999999999999999999999999999999999 9999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 027087 169 VHAALAAALYVDK-HALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 169 ~~~~la~~l~~~~-~~~~~A~~~~~~al~l~P~~~ 202 (228)
++..++.++.. . |++++|++.|++++..+|...
T Consensus 78 ~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 78 VWAAKADALRY-IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHTT-CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999888 5 588999999999999999864
No 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=1.1e-15 Score=117.73 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVEN------------------YKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------------------~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+.+..+.++|..+++.|+|++|+..|++++++ +|.+.. +++|+|.++..+|++++|+..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP---LYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHH---HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH---HHHHHHHHHHhcCcHHHHHHH
Confidence 45778999999999999999999999999999 777777 899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
+++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999985 599999999999999999987
No 30
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.65 E-value=4.6e-15 Score=107.63 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=104.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
+.+|+++..++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..+++++...|.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 456888999999999999999999999999999999999998 99999999999999999999999999988999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..+|.++.. .|++++|+..|+++++++|++.....
T Consensus 83 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (131)
T 2vyi_A 83 YGRMGLALSS-LNKHVEAVAYYKKALELDPDNETYKS 118 (131)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHhcCccchHHHH
Confidence 9999999888 56999999999999999998876544
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=110.23 Aligned_cols=111 Identities=20% Similarity=0.127 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
.|.+..+++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..+++++...|.++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 5778889999999999999999999999999999999998 9999999999999999999999999998899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+|.++.. .|++++|+..|+++++++|++.....
T Consensus 89 ~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 89 RKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 99999888 46899999999999999998876544
No 32
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=6.5e-15 Score=105.09 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
.+..++.+|.++...|++++|+..|++++..+|++.. +++++|.++...|++++|+..+++++...|.++..+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 5678999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 175 AALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++.. .|++++|+..|+++++++|++.....
T Consensus 80 ~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 80 AALEF-LNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHH-HhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99888 56999999999999999998876544
No 33
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=9.5e-15 Score=126.64 Aligned_cols=128 Identities=16% Similarity=0.007 Sum_probs=86.4
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+..+.++..+.++++.+|++..+++++|.++...|++++|+..|+++++++|+++. +++++|.++...|++++|+.
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Confidence 344555666666666666777777777777777777777777777777777777666 67777777777777777777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.|++++...|.+++.+..++.++.. .|++++|+..|+++++++|++...++
T Consensus 293 ~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 293 CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 7777766666666666666666655 34667777777777777776655433
No 34
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.64 E-value=5e-15 Score=122.27 Aligned_cols=131 Identities=13% Similarity=-0.011 Sum_probs=117.2
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH---
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE--- 145 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~--- 145 (228)
....+..+.|+..+..+++.+|++ ..+++.+|.++..+|++++|+..|+++++++|+++....+++++|.+++.
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence 345677899999999999999998 99999999999999999999999999999999876555589999999999
Q ss_pred -----cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 146 -----VGDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 146 -----~g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+|++++|+..|++++...|.++.+. +.+|.+++. .|++++|+..|+++++.+|+...
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCch
Confidence 9999999999999998888886444 778998888 56999999999999999998654
No 35
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=1.3e-15 Score=131.96 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=110.6
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------chhHHHHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---------------AFSEYARVGRALALYE 145 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---------------~~~~~a~~~la~~~~~ 145 (228)
++..+..+++.+|+++.+++++|.++...|+|++|+..|+++++++|++ .. +++|+|.++..
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~ 208 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLK 208 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3334455567789999999999999999999999999999999999999 47 89999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+|++++|+..|++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++..++.
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999999999999999999884 5899999999999999999987654
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=9.8e-16 Score=144.52 Aligned_cols=149 Identities=17% Similarity=0.022 Sum_probs=129.0
Q ss_pred hhCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALY 144 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~ 144 (228)
...+..+.|+..+.+++ +.+|++..+++++|.++..+|++++|+..|+++++++|++.. +++++|.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---LVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---HHHHHHHHHH
Confidence 45566788888999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhh-----hcCCCChhHHH
Q 027087 145 EVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVK-----DTKHWPPSLVS 219 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-----~~~~~~~~~~~ 219 (228)
.+|++++|++.|++++...|.++++++++|.++..+ |++++ ++.|+++++++|++..+++.. .+.++ +..+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR-VGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH-HHHHH
Confidence 999999999999999999999999999999999885 58899 999999999999999876632 22222 33455
Q ss_pred HHHHhhcc
Q 027087 220 SLRHFITL 227 (228)
Q Consensus 220 ~~~~~~~~ 227 (228)
.+++++++
T Consensus 556 ~~~~al~l 563 (681)
T 2pzi_A 556 TLDEVPPT 563 (681)
T ss_dssp HHHTSCTT
T ss_pred HHHhhccc
Confidence 66666554
No 37
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=1.6e-14 Score=104.83 Aligned_cols=124 Identities=22% Similarity=0.170 Sum_probs=114.3
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.+...+..+++.+|++...++.+|.++...|++++|+..|++++..+|++.. +++++|.++...|++++|+
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~ 89 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAI 89 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---HHHHHHHHHHHhcCHHHHH
Confidence 3355778888889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
..+++++...+.++..+..++.++.. .|++++|+..|+++++++|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 90 EYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence 99999988888889999999998887 568999999999999999863
No 38
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=1.9e-14 Score=110.31 Aligned_cols=128 Identities=16% Similarity=0.041 Sum_probs=101.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 53 VKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN---VRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHH---HHHHHHHHHHHcCcHHHH
Confidence 34566777777777778888888888888888888888888888888888888888877 788888888888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+..+++++...+.++.++..++.++.. .|++++|...|+++++++|++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 130 IDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCchhh
Confidence 888888877777777888888887777 457788888888888888776654
No 39
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=5e-15 Score=128.40 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=123.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.++..+.++++.+|+++.+++++|.++.+.|++++|+..|+++++++|++.. ++.++|.++...|++++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHHHHHcCCHHH
Confidence 345567788888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|+..|++++...|.++.++..++.++.. .|++++|+..|+++++++|++..+++..+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 9999999988778888999999998888 46889999999999999999988776544
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=6.1e-15 Score=108.17 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAAL 173 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~l 173 (228)
.+++++|.++...|++++|+..|+++++.+|++.....+++++|.+++..|++++|+..|++++...|.+ +++++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578999999999999999999999999999998222289999999999999999999999999998988 8899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|.++.. .|++++|+..|+++++.+|++.....
T Consensus 83 a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYG-EGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 999988 56899999999999999998876543
No 41
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.63 E-value=1.5e-14 Score=104.01 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=101.5
Q ss_pred cChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 91 SRVSD-ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 91 ~~p~~-a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
.+|.+ +..++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..+++++...+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 35555 788999999999999999999999999999999998 99999999999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
+..++.++.. .|++++|+..|+++++++|++......
T Consensus 80 ~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (125)
T 1na0_A 80 WYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQN 116 (125)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999988 568999999999999999988776543
No 42
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-15 Score=110.22 Aligned_cols=112 Identities=21% Similarity=0.119 Sum_probs=103.9
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
.+++++..++.+|..+...|++++|+..|+++++++|++ .. +++++|.++...|++++|+..+++++...|.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAV---LHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 467888999999999999999999999999999999997 66 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+++.+|.++... |++++|+..|+++++++|++.....
T Consensus 100 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 100 KALYRRSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999885 5899999999999999999877543
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=3.9e-15 Score=134.63 Aligned_cols=130 Identities=15% Similarity=0.031 Sum_probs=113.2
Q ss_pred hhCCCc-hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-----
Q 027087 73 ATYDPL-TQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----- 146 (228)
Q Consensus 73 ~~~~~~-~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----- 146 (228)
...+.. +.|+..+.++++.+|+++.+++++|.++..+|++++|+..|+++++++|+ .. +++++|.++..+
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV---SLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH---HHHHHHHHHTTCCCSCH
T ss_pred HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH---HHHHHHHHHHHhccCCh
Confidence 345566 88999999999999999999999999999999999999999999999998 56 899999999999
Q ss_pred ----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----c--CCHHHHHHHHHHHHhcCC---CCCchhh
Q 027087 147 ----GDREEAIAEMEDVSISLKGYPEVHAALAAALYVD-----K--HALLLAENQFTIATLLDP---HYTDLSY 206 (228)
Q Consensus 147 ----g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~-----~--~~~~~A~~~~~~al~l~P---~~~~~~~ 206 (228)
|++++|+..|++++...|.++.++..+|.++... . |++++|+..|+++++++| ++...++
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 262 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 9999999999999888888899999999988874 0 478999999999999999 7776654
No 44
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.2e-14 Score=115.58 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=110.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+..+..++ ++ ++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---AYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---HHHHHHHHHHHcccHHHH
Confidence 34566777777777764 33 6789999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 153 IAEMEDVSISLKGYP----------------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 153 ~~~~~~al~~~~~~p----------------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+..|++++...+.++ .+++++|.+++. .|++++|+..|+++++++|++...
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCcccccc
Confidence 999999988777655 899999999988 469999999999999999987543
No 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=4.9e-15 Score=135.97 Aligned_cols=135 Identities=14% Similarity=-0.010 Sum_probs=111.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+.++++.+|+++.+++++|.++..+|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~ 109 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---IALWLGHALEDAGQAEA 109 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHH
Confidence 345566778888888888888888888888888888888888888888888888888888 88888888888888888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDK--HALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~--~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|++.|++++...|.+++++..++.++..++ |++++|++.|+++++.+|++...+..-.
T Consensus 110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888888888887741 5788888888888888888777655443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.5e-14 Score=118.51 Aligned_cols=120 Identities=18% Similarity=0.091 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhc----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 79 TQAEKDASAAVSS----RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 79 ~~a~~~~~~al~~----~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
+.++..+..+++. +|+++.+++.+|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+.
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHccCHHHHHH
Confidence 3444444444443 2444555555555555555555555555555555555555 55555555555555555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++.
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCh
Confidence 5555555555555555555555544 2355555555555555555544
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=3.5e-14 Score=114.23 Aligned_cols=131 Identities=16% Similarity=0.058 Sum_probs=112.8
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.++..+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHTSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhccHHH
Confidence 345667788888888888889999999999999999999999999999999999998888 88999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|+..+++++...+.++..+..+|.++... |++++|+..|+++++.+|++...++
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHH
Confidence 99999999888888888888888888885 4789999999999999988776543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=1.4e-14 Score=116.50 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=123.5
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++.. +++++|.++...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---ARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHcCCHHH
Confidence 445677888888899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|+..|++++...+.++..+..++.++... |++++|+..|+++++++|++...+....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 99999999998899999999999999884 5889999999999999999988765433
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.2e-14 Score=116.08 Aligned_cols=111 Identities=21% Similarity=0.123 Sum_probs=103.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 027087 84 DASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 84 ~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 163 (228)
.+..++..+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+..|++++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 333444489999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 164 KGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 164 ~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
|.++.++..+|.++.. .|++++|+..|+++++++
T Consensus 204 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIA-VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhC
Confidence 9999999999999988 468999999999999999
No 50
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=6.1e-15 Score=124.69 Aligned_cols=128 Identities=13% Similarity=-0.052 Sum_probs=115.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+...+..+.|+..+.++++.+|+++.+++++|.++...|++++|+..|++++..+|++.. ...+.+..+...|+.++
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---QGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---HHHHHHHHHHHHHTSCH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---HHHHHHHHHHhhcccCc
Confidence 456677888888999999999999999999999999999999999999999999997665 78888888999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
|+..|++++...|.++++++++|.++.. .|++++|++.|+++++++|++.+
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGG
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999988 56899999999999999999843
No 51
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.61 E-value=5.4e-15 Score=133.25 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------chhHHHHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF---------------AFSEYARVGRALALYE 145 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---------------~~~~~a~~~la~~~~~ 145 (228)
+...+..+++.+|+++..++++|.++.++|+|++|+..|+++++++|++ .. +++|+|.+|.+
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~ 329 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA---AFLNLAMCYLK 329 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3334445567788999999999999999999999999999999999998 46 89999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+|++++|+..|++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++..++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~ 389 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARL 389 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999985 5999999999999999999998755
No 52
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.61 E-value=3.2e-14 Score=130.57 Aligned_cols=125 Identities=17% Similarity=0.022 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+.|+..+.++++.+|+++.+++++|.++...|++++|++.|+++++++|++.. +++++|.++..+|++++|++.|+
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---AVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHH
Confidence 456777888899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++...|.+++++.++|.++.. .|++++|++.|+++++++|++...++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 129 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITA 129 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999988 56899999999999999999887644
No 53
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=1.2e-14 Score=124.86 Aligned_cols=125 Identities=16% Similarity=0.044 Sum_probs=115.7
Q ss_pred CCCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+..+.++..+..+++.+|+ ++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---LWNRLGATLANGDRSEEA 266 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence 44467788888999999999 9999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..|++++...|.++.++..+|.++... |++++|+..|+++++++|+...
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccCC
Confidence 9999999999999999999999999885 5889999999999999998544
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=6.1e-15 Score=133.33 Aligned_cols=129 Identities=15% Similarity=0.067 Sum_probs=119.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI---------GDFNKALQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~---------g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
...+..+.|+..+.++++++|+ ..+++++|.++... |++++|+..|+++++++|++.. +++++|.++
T Consensus 148 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~ 223 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---SWYILGNAY 223 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence 3456677888888889999999 69999999999999 9999999999999999999999 999999999
Q ss_pred HHc--------CCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 144 YEV--------GDREEAIAEMEDVSISLK---GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 144 ~~~--------g~~~~A~~~~~~al~~~~---~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..+ |++++|+..|++++...| .++.+++++|.++.. .|++++|++.|+++++++|++..++.
T Consensus 224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999 999999999999999999 899999999999988 46999999999999999999987644
No 55
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=3.6e-14 Score=107.74 Aligned_cols=122 Identities=16% Similarity=0.019 Sum_probs=75.2
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+
T Consensus 25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~a~~~~~~~~~~~A~ 101 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAASNMALGKFRAAL 101 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhccHHHHH
Confidence 4455566666666666666666666666666666666666666666666666666666 6666666666666666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 027087 154 AEMEDVSISLKGYPEVHAALAAA--LYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~--l~~~~~~~~~A~~~~~~al~l~P 199 (228)
..|++++...|.++..+..++.+ +.. .|++++|+..++++..+.+
T Consensus 102 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 102 RDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHcccchHHHhc
Confidence 66666666666666555333332 444 2456666666666655443
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.60 E-value=2.4e-14 Score=109.80 Aligned_cols=129 Identities=16% Similarity=0.046 Sum_probs=118.6
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++.. ++.++|.++...|++++|+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---VATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHH
Confidence 3455677888888888999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..+++++...+.++..+..+|.++.. .|++++|+..|+++++.+|++...++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 97 PLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCccchHHHH
Confidence 99999999889999999999999888 56899999999999999998876544
No 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=1.1e-14 Score=112.57 Aligned_cols=93 Identities=10% Similarity=-0.084 Sum_probs=87.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+.|+..+.++++++|+++.+|+++|.++..+|+|++|+..|+++++++|+++. +++++|.+|..+|++++
T Consensus 46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~---~~~~lg~~~~~lg~~~e 122 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT---PVFHTGQCQLRLKAPLK 122 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHH
Confidence 456678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCH
Q 027087 152 AIAEMEDVSISLKGYP 167 (228)
Q Consensus 152 A~~~~~~al~~~~~~p 167 (228)
|+..|++++...+..+
T Consensus 123 A~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 123 AKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9999999977666544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=5.1e-14 Score=111.58 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-CCHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-GDREEAIA 154 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g~~~~A~~ 154 (228)
+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++.. ++.++|.++... |++++|+.
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---INNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhcCcHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555 555555555555 55555555
Q ss_pred HHHHHHH--hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 155 EMEDVSI--SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 155 ~~~~al~--~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
.+++++. ..+.++..+..+|.++.. .|++++|+..|+++++.+|++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAK-QGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCch
Confidence 5555533 112223445555554444 23555555555555555555443
No 59
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=3.4e-14 Score=112.78 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=102.5
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc----------------hhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA----------------FSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~----------------~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
..++.+..++++|..+...|+|++|+..|++++++.|+++ . +++++|.++..+|++++|+.
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS---CNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH---HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH---HHHHHHHHHHHhcCHHHHHH
Confidence 3456778899999999999999999999999999999987 6 89999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+++++...|.++.+++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 99999999999999999999999885 5899999999999999999877644
No 60
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-14 Score=115.08 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=119.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD-------ALELLEKGRELQAIGDFNKALQYFTLVVE-------------------- 124 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~-------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-------------------- 124 (228)
....+..+.++..+..+++.+|++ +.+++.+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 456677889999999999988887 89999999999999999999999999999
Q ss_pred ------hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 125 ------NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 125 ------l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+|++.. +++++|.++...|++++|+..|++++...|.++..+..+|.++.. .|++++|+..|+++++++
T Consensus 128 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYVNPEKAE---EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHCCHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcchHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhC
Confidence 5555666 899999999999999999999999999999999999999999988 569999999999999999
Q ss_pred CCCCchhh
Q 027087 199 PHYTDLSY 206 (228)
Q Consensus 199 P~~~~~~~ 206 (228)
|++...++
T Consensus 204 ~~~~~~~~ 211 (258)
T 3uq3_A 204 PNFVRAYI 211 (258)
T ss_dssp TTCHHHHH
T ss_pred HHHHHHHH
Confidence 99887655
No 61
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=4.4e-14 Score=121.25 Aligned_cols=127 Identities=11% Similarity=0.019 Sum_probs=74.5
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------------------
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD------------------------- 128 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~------------------------- 128 (228)
..+..+.|+..+.++++.+|++..+++++|.++...|++++|+..|+++++++|+
T Consensus 111 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 3444555555555566666666666666666666666655555555555554433
Q ss_pred ---------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Q 027087 129 ---------------------FAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA 187 (228)
Q Consensus 129 ---------------------~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A 187 (228)
++. +++++|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 266 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPD---LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence 333 556666666666666666666666655556666666666665555 3456666
Q ss_pred HHHHHHHHhcCCCCCch
Q 027087 188 ENQFTIATLLDPHYTDL 204 (228)
Q Consensus 188 ~~~~~~al~l~P~~~~~ 204 (228)
+..|+++++++|++...
T Consensus 267 ~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCchHH
Confidence 66666666666665544
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=1.3e-13 Score=104.66 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAAL 173 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~l 173 (228)
+.+..++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+..+++++...|.++.++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 45678999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 174 AAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 174 a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
|.++.. .|++++|+..|+++++++|++....
T Consensus 88 a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 88 AASNMA-LGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHhCCCCHHHH
Confidence 999988 4699999999999999999988765
No 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.58 E-value=3.9e-14 Score=118.67 Aligned_cols=126 Identities=16% Similarity=0.050 Sum_probs=72.7
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------CCCchhHHHHHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY---------KDFAFSEYARVGRALALYE 145 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~---------P~~~~~~~a~~~la~~~~~ 145 (228)
.+..+.+...+..+++.+|+++.+++++|.++...|++++|+..|++++++. |.+.. +++++|.++..
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~la~~~~~ 248 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP---LLNNLGHVCRK 248 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH---HHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH---HHHHHHHHHHH
Confidence 3444555555555555566666666666666666666666666666665554 44444 55566666666
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.|++++|+..|++++...|.++.++..+|.++... |++++|++.|+++++++|++...
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTCSCCHHH
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccCCCchHH
Confidence 66666666666666555555555555566555553 35566666666666666655544
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=5.1e-14 Score=119.48 Aligned_cols=130 Identities=13% Similarity=0.043 Sum_probs=80.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKG--RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG--~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
.+.+..+.|...+.++++.+|++....+..| .++...|++++|+..|+++++.+|+++. +++++|.++..+|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL---LLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHH
Confidence 3455566666666666666666543333222 2223346677777777777766676666 6677777777777777
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+|+..|++++...|.+++++.+++.++...|+..+++.+.++++++++|+++...
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777776666666777777776666644332345566667777777666543
No 65
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.58 E-value=4.5e-14 Score=102.50 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY------ 166 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------ 166 (228)
|+.+..++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..+++++...+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 356788999999999999999999999999999999998 99999999999999999999999998887776
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 167 -PEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 167 -p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+.++..+|.++.. .|++++|+..|+++++++|+
T Consensus 78 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 78 IAKAYARIGNSYFK-EEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCC
Confidence 7889999999888 56999999999999999984
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.58 E-value=4.5e-14 Score=116.45 Aligned_cols=134 Identities=13% Similarity=0.013 Sum_probs=117.2
Q ss_pred HhhCCCchHHHHHHHHHHhcCh---hhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCchhHHHH----
Q 027087 72 AATYDPLTQAEKDASAAVSSRV---SDALELLEKGRELQA--------IGDFNKALQYFTLVVENYKDFAFSEYAR---- 136 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p---~~a~a~~~lG~~~~~--------~g~~~~Ai~~~~~Al~l~P~~~~~~~a~---- 136 (228)
....+..+.|+..+..+++.+| ....+++.+|.++.. .|++++|+..|+++++.+|++.....+.
T Consensus 62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR 141 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence 4567888999999999999877 457899999999999 9999999999999999999998722233
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 027087 137 ----------VGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAALAAALYVDK---------HALLLAENQFTIA 194 (228)
Q Consensus 137 ----------~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~la~~l~~~~---------~~~~~A~~~~~~a 194 (228)
+++|.+|...|++++|+..|++++...|.+ +++++.+|.++..+| |++++|+..|+++
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 899999999999999999999998888874 578999999998752 6899999999999
Q ss_pred HhcCCCCCchh
Q 027087 195 TLLDPHYTDLS 205 (228)
Q Consensus 195 l~l~P~~~~~~ 205 (228)
++.+|++....
T Consensus 222 ~~~~p~~~~~~ 232 (261)
T 3qky_A 222 LQIFPDSPLLR 232 (261)
T ss_dssp HHHCTTCTHHH
T ss_pred HHHCCCChHHH
Confidence 99999987643
No 67
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.4e-14 Score=102.62 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=95.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR---AYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHhCHHH
Confidence 345677889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc------CCCHHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISL------KGYPEVHAALAAALY 178 (228)
Q Consensus 152 A~~~~~~al~~~------~~~p~~~~~la~~l~ 178 (228)
|+..|++++... |.+++++..+..+..
T Consensus 91 A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 91 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999998888 777777777666543
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=5.6e-14 Score=114.17 Aligned_cols=127 Identities=16% Similarity=0.088 Sum_probs=72.4
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVE--NYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~--l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++ .+|++.. +++++|.++...|++++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR---VFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHH---HHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHH---HHHHHHHHHHHcCCHHH
Confidence 344455555555555555555555566666666666666666666666555 4444444 55566666666666666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|+..|++++...+.++..+..++.++.. .|++++|+..|+++++.+|++...
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 160 AKEYFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHH
Confidence 6666666655555555555555555555 335566666666666655555443
No 69
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=1.4e-14 Score=122.24 Aligned_cols=106 Identities=18% Similarity=0.090 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
|+++..++++|..+...|+|++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...|.++.+++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 467889999999999999999999999999999999999 99999999999999999999999998888888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
+|.++.. .|++++|+..|+++++++|++.
T Consensus 78 lg~~~~~-~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 78 LGQCQLE-MESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCccch
Confidence 9999988 4589999999999999999774
No 70
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=1.9e-14 Score=112.36 Aligned_cols=127 Identities=13% Similarity=-0.066 Sum_probs=110.2
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHcCCHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALAL-YEVGDRE 150 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~-~~~g~~~ 150 (228)
....+..+.++..+.++++.+|+++.+++++|.++...|++++|+..|+++++++| ++. .+..++.+. ...++..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---YKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---HHHHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---HHHHHHHHHHHhhcccc
Confidence 34556788899999999999999999999999999999999999999999999999 776 555556443 3334555
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+|+..|++++...|.++++++.+|.++.. .|++++|+..|+++++++|++.+
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccCh
Confidence 78999999999999999999999999988 56999999999999999998754
No 71
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=5.7e-14 Score=119.98 Aligned_cols=123 Identities=18% Similarity=0.064 Sum_probs=115.2
Q ss_pred CCCchHHHHHHHHHHhcChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVS--DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+..+.++..+..+++.+|+ ++..++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---LWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---HHHHHHHHHHHcCCHHHH
Confidence 34456778888899999999 8999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
+..|++++...|.++.++..+|.++... |++++|+..|+++++++|++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999885 58999999999999999987
No 72
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.9e-14 Score=118.04 Aligned_cols=130 Identities=21% Similarity=0.152 Sum_probs=103.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG 147 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g 147 (228)
....+..+.++..+..+++ .+++ +.+++++|.++...|++++|+..|+++++++|++.. ++.++|.++...|
T Consensus 47 ~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---MYGQIGSYFYNKG 122 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHcc
Confidence 4566777788888888887 3333 445888888888888888888888888888888888 8888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++++|+..|++++...|.++..+..+|...+..+ ++++|+..|+++++++|++...++
T Consensus 123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~ 180 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYL 180 (272)
T ss_dssp CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHH
Confidence 8888888888887777777888888884344423 888888888888888888876544
No 73
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.56 E-value=7.1e-14 Score=117.03 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=108.5
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
...+..+.+...+..+++.+|+++.+++.+|.++...| ++++|+..|+++++++|++.. +++++|.++...|++++
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---AWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---HHHHHHHHHHHHTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHccCHHH
Confidence 44566777888888888888888888888888888888 888888888888888888888 88888888888888888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|+..|++++...|.++..+..+|.++.. .|++++|+..|+++++++|++...+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~ 197 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQALSIAPEDPFVMH 197 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCChHHHH
Confidence 8888888888778777888888888877 45888888888888888888766543
No 74
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.2e-13 Score=112.10 Aligned_cols=129 Identities=16% Similarity=0.004 Sum_probs=113.2
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---VLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---HHHHHHHHHHHHhHHHHHH
Confidence 3455677888889999999999999999999999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHH--hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 154 AEMEDVSI--SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 154 ~~~~~al~--~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..|++++. ..+.++.++..+|.++.. .|++++|+..|+++++++|++...++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999965 444556888889998888 46899999999999999998876544
No 75
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.56 E-value=7.9e-15 Score=114.27 Aligned_cols=92 Identities=20% Similarity=0.027 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR----------EEAIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
+.|++|++.|+++++++|++++ +++++|.++..+|++ ++|+..|++++...|.++++++++|.++..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~ae---a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4444444444444444444444 444444444444432 244444444444444444444444444444
Q ss_pred hc----------CCHHHHHHHHHHHHhcCCCCCch
Q 027087 180 DK----------HALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 180 ~~----------~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++ |++++|+++|++|++++|++...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 32 47788888888888888876543
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=9e-14 Score=110.13 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=115.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHHHHcCC
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAI-GDFNKALQYFTLVVE--NYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~--l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
....+..+.+...+..+++.+|++...++++|.++... |++++|+..|+++++ .+|++.. +++++|.++...|+
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI---ANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH---HHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH---HHHHHHHHHHHcCC
Confidence 34567778888889999999999999999999999999 999999999999999 5555566 89999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchhh
Q 027087 149 REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP-HYTDLSY 206 (228)
Q Consensus 149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P-~~~~~~~ 206 (228)
+++|+..|++++...|.++..+..++.++... |++++|+..|+++++++| ++....+
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999888888999999999988884 589999999999999999 7766544
No 77
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=1.3e-13 Score=119.27 Aligned_cols=122 Identities=16% Similarity=-0.015 Sum_probs=111.3
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD---------------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR 136 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~---------------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~ 136 (228)
....+..+.|+..+.++++++|++ ..+++++|.++.++|++++|+..|+++++++|++.. ++
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~ 233 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---GL 233 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HH
Confidence 345577889999999999999998 799999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLA-ENQFTIATLL 197 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A-~~~~~~al~l 197 (228)
+++|.+|..+|++++|+..|++++...|.++.++..++.++..++ ++++| ...|++++..
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR-RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865 77888 6677877754
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.55 E-value=7.8e-14 Score=113.23 Aligned_cols=129 Identities=11% Similarity=-0.051 Sum_probs=111.5
Q ss_pred hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE---- 145 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~---- 145 (228)
...+..+.|+..+..+++.+|++ ..+++++|.++...|++++|+..|+++++++|++..+.++++.+|.++..
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 34567888999999999988876 47899999999999999999999999999999998766689999999986
Q ss_pred --------------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 146 --------------VGDREEAIAEMEDVSISLKGYPEVH-----------------AALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 146 --------------~g~~~~A~~~~~~al~~~~~~p~~~-----------------~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
.|++++|+..|++++...|.++.+. ..+|.+++. .|++++|+..|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGM 173 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHH
Confidence 6799999999999988778776332 456777777 46999999999999
Q ss_pred HhcCCCCC
Q 027087 195 TLLDPHYT 202 (228)
Q Consensus 195 l~l~P~~~ 202 (228)
++.+|++.
T Consensus 174 l~~~p~~~ 181 (225)
T 2yhc_A 174 LRDYPDTQ 181 (225)
T ss_dssp HHHSTTSH
T ss_pred HHHCcCCC
Confidence 99999976
No 79
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=1.9e-13 Score=115.37 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++.+|.++...|++++|+.
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA---ARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch---HHHHHHHHHHHcCChHHHHH
Confidence 344555555566666666666666666666666666666666666666666666655 56666666666666666666
Q ss_pred HHHHHHHhcC---CCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 155 EMEDVSISLK---GYPEVHAAL------------AAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 155 ~~~~al~~~~---~~p~~~~~l------------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.|++++...| .+++.+..+ +.++.. .|++++|+..|+++++.+|++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 93 DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHH
Confidence 6666644444 444444444 233333 345555555555555555555443
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=1.5e-13 Score=105.20 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=89.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|+++. +++++|.++..+|++++
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR---FPFHAAECLLQXGELAE 107 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHcCCHHH
Confidence 345677889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~ 170 (228)
|+..|++++...|.+|+..
T Consensus 108 A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 108 AESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHCcCCCcch
Confidence 9999999999888887543
No 81
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=1.2e-13 Score=106.37 Aligned_cols=105 Identities=15% Similarity=0.036 Sum_probs=95.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+..+++++|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK---AWSRLGLARFDMADYKG 97 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHH
Confidence 345577889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
|+..|++++...|.+++.+..++.....
T Consensus 98 A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 98 AKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999998876666654433
No 82
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=7.8e-13 Score=108.18 Aligned_cols=128 Identities=20% Similarity=0.075 Sum_probs=115.1
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---HHHHHHHHHHHhccHHH
Confidence 446677889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|+..|++++...|.++.....++.. .. .|++++|+..|++++..+|++...
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HH-HHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHH-HH-hcCHHHHHHHHHHHHhcCCcchHH
Confidence 9999999999888888666555544 34 368999999999999999987664
No 83
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=7e-14 Score=114.68 Aligned_cols=133 Identities=8% Similarity=-0.021 Sum_probs=112.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHcCCHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVGRALALYEVGDREE 151 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~la~~~~~~g~~~~ 151 (228)
...+..+.|+..+..+++.+|++..+++.+|.++...|++++|+..|+++++ .|++... ..+++++|.++...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 3456678888889999999999999999999999999999999999999998 5544441 2258899999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
|+..|++++...|.+++++..+|.++.. .|++++|+..|+++++++|++...++.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~ 147 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPKVFYE 147 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCCHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 9999999988888888999999998888 458999999999999999988876553
No 84
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.54 E-value=2.1e-13 Score=115.73 Aligned_cols=130 Identities=10% Similarity=-0.043 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRA--LALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
|++..+++.+|.++.++|++++|++.|+++++.+|++.. .....+ .++...|++++|+..|++++...|.++.++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~---~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL---TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH---HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 788899999999999999999999999999999999764 333333 233345899999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh-----hhcCCCChhHHHHHHHhhc
Q 027087 171 AALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV-----KDTKHWPPSLVSSLRHFIT 226 (228)
Q Consensus 171 ~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 226 (228)
+++|.++.. .|++++|++.|+++++++|++++++.. ..+.++.+....-++++++
T Consensus 204 ~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 204 NGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999988 469999999999999999999987542 2334454445555566554
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=1.3e-13 Score=104.02 Aligned_cols=98 Identities=18% Similarity=0.061 Sum_probs=90.5
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+..++..+|+++.+++++|.++...|++++|+..|+++++++|+++. +++++|.++..+|++++
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR---FPFHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---HHHHHHHHHHHTTCHHH
T ss_pred HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHcCCHHH
Confidence 345577889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~ 172 (228)
|+..|++++...|.+|+....
T Consensus 105 A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 105 AESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHhCCCCcchHHH
Confidence 999999999888888755443
No 86
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=1.8e-13 Score=114.36 Aligned_cols=121 Identities=17% Similarity=0.046 Sum_probs=113.8
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
..+.+...+..+++.+|++..+++.+|.++...|++++|+..|+++++.+|++.. ++.++|.++...|++++|+..|
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---LWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHH
Confidence 3567788888899999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 157 EDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 157 ~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
++++...|.++.++..+|.++.. .|++++|+..|+++++++|+.
T Consensus 230 ~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 230 NRALDINPGYVRVMYNMAVSYSN-MSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence 99999889999999999999988 568999999999999999983
No 87
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=1.8e-14 Score=130.69 Aligned_cols=131 Identities=15% Similarity=0.047 Sum_probs=115.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+.+..+.|+..+.++++.+|+++.+++++|.++.++|++++|+..|+++++++|++.. +++++|.+|..+|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---GYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-----------HHHhcCCCCCchhhh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAA--LYVDKHALLLAENQFT-----------IATLLDPHYTDLSYV 207 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~--l~~~~~~~~~A~~~~~-----------~al~l~P~~~~~~~~ 207 (228)
++.|++++...|.+++++..++.+ +.. .|++++|++.++ ++++++|++...++.
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 999999999999998898888887 666 458999999999 999999988776543
No 88
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=5.2e-13 Score=113.96 Aligned_cols=86 Identities=15% Similarity=-0.046 Sum_probs=53.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|
T Consensus 75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT---ALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666 566666666666666655
Q ss_pred HHHHHHHHH
Q 027087 153 IAEMEDVSI 161 (228)
Q Consensus 153 ~~~~~~al~ 161 (228)
+..|++++.
T Consensus 152 ~~~~~~~~~ 160 (368)
T 1fch_A 152 CEILRDWLR 160 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 89
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.53 E-value=7.7e-14 Score=101.86 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=82.3
Q ss_pred CchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 77 PLTQAEKDASAAVSS---RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 77 ~~~~a~~~~~~al~~---~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+.|+..+.++++. +|+++.+++++|.++..+|++++|+..|+++++++|+++. +++++|.++..+|++++|+
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---LRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHcCCHHHHH
Confidence 345677788889988 6999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 027087 154 AEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la 174 (228)
..|++++...|.+++......
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHhCCCcHHHHHHHH
Confidence 999999888888887654333
No 90
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=9.5e-15 Score=106.74 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=83.6
Q ss_pred HcCCHHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Q 027087 108 AIGDFNKALQYFTLVVEN---YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL 184 (228)
Q Consensus 108 ~~g~~~~Ai~~~~~Al~l---~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~ 184 (228)
.+|++++|+..|++++++ +|++.. +++++|.++..+|++++|+..|++++...|.++++++.+|.++... |++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCH
Confidence 469999999999999999 688887 9999999999999999999999999999999999999999999985 589
Q ss_pred HHHHHHHHHHHhcCCCCCchh
Q 027087 185 LLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 185 ~~A~~~~~~al~l~P~~~~~~ 205 (228)
++|+..|+++++++|++....
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999999987753
No 91
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=2.3e-14 Score=124.20 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=79.9
Q ss_pred hCCCchHHHHHHHHHHhcChhhH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDA-----------------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR 136 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a-----------------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~ 136 (228)
+.+..+.|+..+..+++.+|++. .+++++|.++.++|+|++|+..|+++++++|++.. ++
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~ 267 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK---AL 267 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH---HH
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence 45668889999999999999887 48999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+++|.+|..+|++++|+..|++++...|.++.++..++.+.....+..+++...|++++..+|++..
T Consensus 268 ~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 268 FRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999988888888899999988666667889999999999999998764
No 92
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=4.9e-14 Score=109.78 Aligned_cols=96 Identities=16% Similarity=0.012 Sum_probs=85.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF----------NKALQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~----------~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
++...+.++..+..+++++|+++++|+++|.++...|++ ++|+..|++|++++|++.+ +++++|.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---AVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---HHHHHHHHH
Confidence 344567888889999999999999999999999999875 5999999999999999999 999999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 144 YEVG-----------DREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 144 ~~~g-----------~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
..+| ++++|+++|++++...|.++....+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9885 8999999999999998888755443
No 93
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=7.6e-14 Score=103.20 Aligned_cols=92 Identities=11% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
..+.+..+.|+..+.++++.+|+++.+++.+|.++...|++++|+..|+++++++|++.. +++++|.++...|++++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence 345677889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 027087 152 AIAEMEDVSISLKGY 166 (228)
Q Consensus 152 A~~~~~~al~~~~~~ 166 (228)
|+..|++++...|.+
T Consensus 104 A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 104 ALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCcCC
Confidence 999999996555544
No 94
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=8.5e-14 Score=106.96 Aligned_cols=105 Identities=13% Similarity=0.000 Sum_probs=93.7
Q ss_pred HhhCCCchHHHHHHHHHHhc------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhH
Q 027087 72 AATYDPLTQAEKDASAAVSS------------------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSE 133 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~------------------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~ 133 (228)
..+.+..+.|+..+..++.. +|.+..+++++|.++..+|+|++|+..++++++++|++..
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 98 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK-- 98 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH--
Confidence 34556788899999999987 8888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 027087 134 YARVGRALALYEVGDREEAIAEMEDVSISLKGYP-EVHAALAAALYV 179 (228)
Q Consensus 134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p-~~~~~la~~l~~ 179 (228)
+++++|.++..+|++++|+..|++++...|.++ .+...++.+...
T Consensus 99 -a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 99 -ALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 556666665444
No 95
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.50 E-value=3.2e-13 Score=120.96 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=106.7
Q ss_pred hCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAI 153 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~ 153 (228)
..+..+.+...+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY---PYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---HHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Confidence 3455677777778888888888888888888888888888888888888888888888 8888888888888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhh
Confidence 88888888888888888888888877 458888888888888888876654
No 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-13 Score=97.22 Aligned_cols=106 Identities=15% Similarity=0.069 Sum_probs=98.5
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.++..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|
T Consensus 27 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~~~~~~A 103 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---GYTRKAAALEAMKDYTKA 103 (133)
T ss_dssp HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHHhhHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDK 181 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~ 181 (228)
+..|++++...|.+++++..++.++..++
T Consensus 104 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 104 MDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999998888888899999999887743
No 97
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.50 E-value=4.9e-13 Score=121.67 Aligned_cols=128 Identities=15% Similarity=0.088 Sum_probs=74.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
.+.+..+.|+..+..+++.+|++...++.+|.++.+.|++++|++.|+++++++|+++. +++++|.++.+.|++++|
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---LLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCHHHH
Confidence 34455555666666666666666666666666666666666666666666666666555 566666666666666666
Q ss_pred HHHHHHHHHhc------CCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 153 IAEMEDVSISL------KGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 153 ~~~~~~al~~~------~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++.|++++... |.+ +..+..++.++.. .|++++|++.|+++++++|++...
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHH
Confidence 66666665442 221 3455555555555 335566666666666666655543
No 98
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.9e-13 Score=114.11 Aligned_cols=117 Identities=10% Similarity=-0.086 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQA-------IGDF-------NKALQYFTLVVE-NYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~-------~g~~-------~~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~~ 145 (228)
+...+.+++..+|+++.+|+++|..+.. .|++ ++|+..|+++++ ++|++.. +|.++|.++..
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---~~~~~~~~~~~ 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHh
Confidence 3344455555555555555555554432 3443 555555555555 4555554 55555555555
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 146 VGDREEAIAEMEDVSISLKGYPE-VHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~-~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.|++++|+..|++++...|.+++ ++..++.++... |++++|+..|+++++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCC
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC
Confidence 55555555555555444444443 455555544442 24455555555555555544
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=2.7e-13 Score=114.44 Aligned_cols=131 Identities=18% Similarity=0.056 Sum_probs=82.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAI-GDFNKALQYFTLVVENYKDFAF---SEYARVGRALA 142 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~-g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~ 142 (228)
...+..+.|+..+.+++++.++. +.++.++|.++... |++++|+..|++++++.|++.. ...++.++|.+
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 34556666777777776555432 45677777777775 7777777777777777765411 01156777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 143 LYEVGDREEAIAEMEDVSISLKGYPE-------VHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~~p~-------~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+..+|++++|+..|++++...+.++. .+.++|.++.. .|++++|+..|+++++++|++...
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCc
Confidence 77777777777777777665555432 45666776666 347777777777777777776653
No 100
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=1.8e-12 Score=93.69 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=99.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.++..+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---AYGRMGLALSSLNKHVEA 99 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---HHHHHHHHHHHhCCHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDK 181 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~ 181 (228)
+..|++++...|.++.++..++.++...+
T Consensus 100 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 100 VAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999887754
No 101
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=8.6e-13 Score=115.76 Aligned_cols=130 Identities=21% Similarity=0.160 Sum_probs=108.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|+..+..+++.+|+++.+++.+|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA---ARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHH
Confidence 45566788888888889889999999999999999999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHhcCCCH---HHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 153 IAEMEDVSISLKGYP---EVHAAL------------AAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 153 ~~~~~~al~~~~~~p---~~~~~l------------a~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..|++++...|.++ ..+..+ |.++.. .|++++|+..|+++++++|++...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG-SGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999977666666 665544 444655 46889999999999999888776543
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.48 E-value=9.5e-13 Score=106.75 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=115.9
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhcCCCc
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDAL---ELLEKGRELQA------------------IGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~---a~~~lG~~~~~------------------~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
....+..+.|+..+.++++.+|++.. +++.+|.++.. .|++++|+..|+++++.+|++.
T Consensus 51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 45667889999999999999998864 89999999986 6899999999999999999998
Q ss_pred hhHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 131 FSEYA--------------RVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 131 ~~~~a--------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
.+..+ .+.+|.+++..|++++|+..|++++...|.++ +++..+|.++..+ |++++|++.+++
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~-g~~~~A~~~~~~ 209 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM-QMNAQAEKVAKI 209 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc-CCcHHHHHHHHH
Confidence 72111 16789999999999999999999999888886 7899999999885 589999999999
Q ss_pred HHhcCCCCCchhh
Q 027087 194 ATLLDPHYTDLSY 206 (228)
Q Consensus 194 al~l~P~~~~~~~ 206 (228)
++...|+..+-++
T Consensus 210 l~~~~~~~~~~~~ 222 (225)
T 2yhc_A 210 IAANSSNTLEHHH 222 (225)
T ss_dssp HHHCCSCCCCCTT
T ss_pred HHhhCCCchhhcc
Confidence 9999998877543
No 103
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=1.8e-12 Score=109.27 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=108.3
Q ss_pred hhCCCchHHHHHHHHHHhcCh---hhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRV---SDALELLEK------------GRELQAIGDFNKALQYFTLVVENYKDFAFSEYARV 137 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p---~~a~a~~~l------------G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~ 137 (228)
...+..+.+...+..+++.+| ++...++.+ |.++...|++++|+..|+++++.+|++.. ++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE---LRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH---HHH
Confidence 345667778888888888888 888887777 68888889999999999999988898888 889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 138 GRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 138 ~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
++|.++...|++++|+..+++++...|.+++.+..+|.++... |++++|+..|+++++++|++...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL-GDHELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCccchHH
Confidence 9999999999999999999999888888888888899888884 58899999999999999988764
No 104
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=5.1e-14 Score=122.00 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=96.1
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-----------------hhHHHHHHHHHHHHHcCCHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-----------------FSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-----------------~~~~a~~~la~~~~~~g~~~~A 152 (228)
+..++.+..++++|..+...|+|++|+..|++++.++|++. . +++|+|.++..+|++++|
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~---~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP---CHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTH---HHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHH---HHHHHHHHHHHcCCHHHH
Confidence 44567788999999999999999999999999999999876 4 789999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..|++++...|.++.+++.+|.++.. .|++++|+..|+++++++|++..++.
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999988 56999999999999999999887654
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=1.6e-12 Score=114.13 Aligned_cols=133 Identities=11% Similarity=-0.000 Sum_probs=108.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCCCchh-HHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEK------------GRELQAIGDFNKALQYFTLVVENYKDFAFS-EYARVG 138 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~l------------G~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~-~~a~~~ 138 (228)
....+..+.+...+..+++.+|++...+..+ |.++...|++++|+..|+++++++|+++.. ...+.+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3455667777778888888888887776555 888888888888888888888888887421 115788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 139 RALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHH
Confidence 89999999999999999999988888888999999998887 4588999999999999999887653
No 106
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.48 E-value=1.8e-13 Score=106.79 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=85.4
Q ss_pred hhCCCchHHHHHHHHHHhcChh-------h-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCchhH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVS-------D-----ALELLEKGRELQAIGDFNKALQYFTLVVEN-------YKDFAFSE 133 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~-------~-----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-------~P~~~~~~ 133 (228)
.+.+..+.|+..++++++++|+ + +.+|+|+|.++..+|+|++|+.+|+++|++ +|++..
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~-- 99 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK-- 99 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH--
T ss_pred HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH--
Confidence 3557789999999999999998 4 349999999999999999999999999999 999999
Q ss_pred HHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087 134 YAR----VGRALALYEVGDREEAIAEMEDVSISLKGYPE 168 (228)
Q Consensus 134 ~a~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~ 168 (228)
+| +++|.++..+|++++|+.+|++++...|.+..
T Consensus 100 -A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 100 -LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99 99999999999999999999999888887763
No 107
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=8.7e-13 Score=104.53 Aligned_cols=123 Identities=13% Similarity=-0.040 Sum_probs=101.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDA----------------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYA 135 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a----------------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a 135 (228)
....+..+.|+..+..+++..|+++ .+++++|.++...|++++|+..|+++++++|++.. +
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 124 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---A 124 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---H
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH---H
Confidence 3456778889999999999888876 89999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcC
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAE-NQFTIATLLD 198 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~-~~~~~al~l~ 198 (228)
++++|.++..+|++++|+..|++++...|.++.++..++.++...+ +.+++. ..|.+.+...
T Consensus 125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK-EARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHC-------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999887754 556665 5566555543
No 108
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=8.4e-13 Score=112.03 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 79 TQAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 79 ~~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
+.+...+.++++ ++|++..+|+++|.++...|++++|+..|+++++++|++.. .+|.++|.++.+.|++++|+..|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 677777888887 68888888888888888888888888888888888887763 167888888888888888888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+++...|.+...+...+.+.+...|++++|+..|+++++++|++...
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 88665555555555444443333457777777777777777776554
No 109
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.47 E-value=3.3e-13 Score=118.62 Aligned_cols=109 Identities=10% Similarity=-0.024 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVE----------------NYKDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~----------------l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
+.+..++++|..+.+.|+|++|+..|+++++ ++|.+.. +++|+|.+++.+|++++|+..++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS---CVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHH---HHHHHHHHHHhccCHHHHHHHHH
Confidence 4466799999999999999999999999999 7777788 89999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++...|.++.+++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~ 345 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQA 345 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99988889999999999999884 6999999999999999999877544
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.47 E-value=1.2e-12 Score=94.80 Aligned_cols=106 Identities=24% Similarity=0.225 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
.+++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..+++++...+.++..+..++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 46899999999999999999999999999999998 899999999999999999999999988888889999999998
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 177 LYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 177 l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+.. .|++++|+..|+++++.+|++....+
T Consensus 79 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 107 (136)
T 2fo7_A 79 YYK-QGDYDEAIEYYQKALELDPRSAEAWY 107 (136)
T ss_dssp HHT-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH-hcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 887 56899999999999999998876543
No 111
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=1.2e-12 Score=110.57 Aligned_cols=132 Identities=10% Similarity=-0.058 Sum_probs=109.9
Q ss_pred HhhCCCchHHHHHHHHHHhcC-----h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSR-----V-SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALA 142 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~-----p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~ 142 (228)
....+..+.|+..+.+++++. + ..+.++.++|.++..+|++++|+.+|++++++.|+... ...++.++|.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677888888888888653 3 23789999999999999999999999999999876521 12378999999
Q ss_pred HHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 143 LYEV-GDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 143 ~~~~-g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|... |++++|+..|++++...+.+ ..++..+|.++.. .|++++|+..|+++++++|+....
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcc
Confidence 9996 99999999999998877643 3567889998888 469999999999999999987764
No 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=1.2e-12 Score=97.50 Aligned_cols=100 Identities=15% Similarity=0.040 Sum_probs=86.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHHcC
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALALYEVG 147 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~~~~~g 147 (228)
..+.+..+.|+..+.++++++|+++.+++++|.++..+|+|++|+..|+++++++|++.. .+.+++++|.++..+|
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 445677899999999999999999999999999999999999999999999999998743 1237899999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 148 DREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 148 ~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
++++|+..|++++... .+|+....
T Consensus 98 ~~~~A~~~~~kal~~~-~~~~~~~~ 121 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF-RDPELVKK 121 (127)
T ss_dssp CHHHHHHHHHHHHHHS-CCHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cCHHHHHH
Confidence 9999999999996644 46765443
No 113
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.46 E-value=9.2e-14 Score=125.98 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
.++.+..++++|.++..+|++++|++.|+++++++|++.. +++++|.++.++|++++|++.|++++...|.++.+++
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3566777899999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++|.++..+ |++++|++.|+++++++|++...+.
T Consensus 79 ~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~ 112 (477)
T 1wao_1 79 RRAASNMAL-GKFRAALRDYETVVKVKPHDKDAKM 112 (477)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999885 5899999999999999999988654
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=1.2e-12 Score=117.27 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=120.3
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.+...+..+++.+|+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---TYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHhcCCHHH
Confidence 34456678888899999999999 999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+.
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999988 56999999999999999999987644
No 115
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.5e-14 Score=99.76 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY------PE 168 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------p~ 168 (228)
++..++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...|.+ +.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5678999999999999999999999999999999999 99999999999999999999999998888888 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 027087 169 VHAALAAALYVDKHALLLAENQF 191 (228)
Q Consensus 169 ~~~~la~~l~~~~~~~~~A~~~~ 191 (228)
+++.+|.++...+ ++++|+..|
T Consensus 80 ~~~~~~~~~~~~~-~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVG-SVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHH-CCCCCSSSS
T ss_pred HHHHHHHHHHHHH-hHhhhHhHH
Confidence 8888888887754 555555543
No 116
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.45 E-value=2e-12 Score=88.68 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
+.++..++++|.++...|++++|+..|+++++++|++.. +++++|.++...|++++|+..|++++...|.++.++..
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 357889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027087 173 LAAALYVD 180 (228)
Q Consensus 173 la~~l~~~ 180 (228)
+|.++...
T Consensus 83 l~~~~~~~ 90 (91)
T 1na3_A 83 LGNAKQKQ 90 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99987663
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.45 E-value=2.9e-12 Score=101.64 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAA 172 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~ 172 (228)
..++..++++|.++...|++++|+..|++++ +| ++. +++++|.++...|++++|+..|++++...|.++.++..
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3456678999999999999999999999995 45 566 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 173 LAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 173 la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
+|.++.. .|++++|+..|++++++.|++.
T Consensus 77 lg~~~~~-~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 77 RGMLYYQ-TEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHH-cccHHHHHHHHHHHHHhCCCcc
Confidence 9999988 5699999999999999999877
No 118
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=3.2e-12 Score=90.86 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=93.5
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+..++..+|++...++++|.++...|++++|+..++++++++|++.. +++++|.++...|++++|
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~A 91 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---GYSRKAAALEFLNRFEEA 91 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHHhhHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
+..|++++...|.++..+..++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 92 KRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999988888888888777764
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.45 E-value=5.8e-13 Score=111.31 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=115.8
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR---VMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhccHHH
Confidence 445677888999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 152 AIAEMEDVSISLKG------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 152 A~~~~~~al~~~~~------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
|+..|++++...|. ++..+..++.++... |++++|...++++++..|+.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM-NRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT-TCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcchh
Confidence 99999999999888 688999999999884 68999999999888876654
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=6e-12 Score=90.16 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=97.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|
T Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A 96 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEA 96 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhcCHHHH
Confidence 34566788899999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087 153 IAEMEDVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 153 ~~~~~~al~~~~~~p~~~~~la~~l~~~ 180 (228)
+..|++++...|.++.++..++.++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 97 IEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999998877653
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=1.3e-13 Score=107.57 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~ 171 (228)
||...+.++.+|..+...|++++|+..|+++++++|++.. +++++|.++...|++++|+..|++++...| ++..+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence 3455566899999999999999999999999999999999 999999999999999999999999988778 887666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.++.+....++...+|+..|+++++++|++...++
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~ 112 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 66654333222335689999999999999988765
No 122
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.43 E-value=2.8e-12 Score=116.62 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.+...+..+++.+|++...++.+|.++.+.|++++|+..|+++++++|++.. +++++|.++.+.|++++|++.
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP---AWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555556667777777788888888888888888888888888887777 778888888888888888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
|++++...|.++..+..++.++.. .|++++|++.|+++++++|++...+
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 888776666677777777777766 3477888888888888877766543
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.43 E-value=5.1e-13 Score=112.56 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=107.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Confidence 345577889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCH-----H--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 152 AIAEMEDVSISLKGYP-----E--------------------------VHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 152 A~~~~~~al~~~~~~p-----~--------------------------~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
|+..|++++...|.++ . ....++.++ .|++++|++.|+++++++|+
T Consensus 91 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~---~~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI---AAERERELEECQRNHEGHED 167 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH---HHHHHHHHTTTSGGGTTTSC
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhccccc
Confidence 9999999988776542 1 111222211 24789999999999999997
Q ss_pred CCc
Q 027087 201 YTD 203 (228)
Q Consensus 201 ~~~ 203 (228)
+..
T Consensus 168 ~~~ 170 (281)
T 2c2l_A 168 DGH 170 (281)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=1.3e-12 Score=117.55 Aligned_cols=120 Identities=12% Similarity=-0.039 Sum_probs=102.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD---------------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYAR 136 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~---------------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~ 136 (228)
..+.+..+.|+..+.++++++|++ ..+++++|.++.++|+|++|+..|+++++++|++.. ++
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~ 354 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---GL 354 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---HH
Confidence 446677889999999999999988 799999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAE-NQFTIAT 195 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~-~~~~~al 195 (228)
+++|.+|..+|++++|+..|++++...|.++.++..++.++..++ +++++. ..|++++
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK-EHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH-HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999998888888899999999888865 566665 3444444
No 125
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-12 Score=115.15 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAE 155 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~ 155 (228)
+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---HHHHHHHHHHHCCCHHHHHHH
Confidence 33444444444444444444444455555555555555555555555555554444 444445555445555555555
Q ss_pred HHHHHHhcCCCHH------HHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCc
Q 027087 156 MEDVSISLKGYPE------VHAALAAALYVD--KHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 156 ~~~al~~~~~~p~------~~~~la~~l~~~--~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
|++++...+.++. ++..+|.++... .|++++|+..|+++++++|++..
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence 5444444443332 444444444330 12444444444444444444443
No 126
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-11 Score=90.86 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=93.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD---ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDR 149 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~---a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~ 149 (228)
...+..+.++..+..+++.+|++ ..+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++
T Consensus 39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---ALYRRSQALEKLGRL 115 (148)
T ss_dssp HTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH---HHHHHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH---HHHHHHHHHHHcCCH
Confidence 34566888999999999999998 899999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
++|+..|++++...|.+++++..++.+.
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 116 DQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999998887776643
No 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=3.2e-12 Score=94.38 Aligned_cols=104 Identities=15% Similarity=-0.002 Sum_probs=92.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~ 95 (137)
T 3q49_B 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---AHFFLGQCQLEMESYDE 95 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHH
T ss_pred HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH---HHHHHHHHHHHHhhHHH
Confidence 345567889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISLKG-----YPEVHAALAAALY 178 (228)
Q Consensus 152 A~~~~~~al~~~~~-----~p~~~~~la~~l~ 178 (228)
|+..|++++...|. +.++...+..+..
T Consensus 96 A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999999887776 4455555555443
No 128
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.42 E-value=5.5e-12 Score=92.15 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=90.8
Q ss_pred hhCCCchHHHHHHHHHHhcChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHc
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDA---LELLEKGRELQAIGDFNKALQYFTLVVENYKDF---AFSEYARVGRALALYEV 146 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a---~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~---~~~~~a~~~la~~~~~~ 146 (228)
...+..+.|+..+..+++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +. +++++|.++..+
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~~~~la~~~~~~ 89 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG---GLLKLGLSQYGE 89 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH---HHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH---HHHHHHHHHHHc
Confidence 455678889999999999999988 899999999999999999999999999999999 66 899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAALAAA 176 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~ 176 (228)
|++++|+..|++++...|.++.+...+..+
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999988888888766655543
No 129
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.42 E-value=3.3e-12 Score=92.40 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.++..+.++++.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---AWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566778889999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcC
Q 027087 160 SISLK 164 (228)
Q Consensus 160 l~~~~ 164 (228)
+...|
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 76655
No 130
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2e-12 Score=114.75 Aligned_cols=133 Identities=19% Similarity=0.041 Sum_probs=119.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHH---c
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYE---V 146 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~---~ 146 (228)
...+..+.+...+..+++.+|++...++++|.++...|++++|+..|+++++++|++... ..+++++|.++.. .
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 345667888889999999999999999999999999999999999999999999988421 0169999999999 9
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
|++++|+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++.....
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999988 56899999999999999999887644
No 131
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.40 E-value=1.8e-12 Score=92.32 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=65.2
Q ss_pred cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 91 SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
.+|+++.+++++|.++...|++++|+..|+++++++|++.. +++++|.++..+|++++|+..|++++...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 47999999999999999999999999999999999999999 999999999999999999999999966544
No 132
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=9.3e-12 Score=109.33 Aligned_cols=114 Identities=15% Similarity=0.019 Sum_probs=102.6
Q ss_pred HhhCCCchHHHHHHHHHHh----------------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHH
Q 027087 72 AATYDPLTQAEKDASAAVS----------------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYA 135 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~----------------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a 135 (228)
..+....+.|+..+..+++ .+|.++.+++++|.++.++|+|++|+..|+++++++|++.. +
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---a 309 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---A 309 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---H
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---H
Confidence 3455677888888888887 88999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAEN 189 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~ 189 (228)
++++|.+|..+|++++|+..|++++...|.+++++..++.++..++ +++++.+
T Consensus 310 ~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~-~~~~a~k 362 (370)
T 1ihg_A 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK-AQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999887754 5566654
No 133
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=7.9e-12 Score=101.85 Aligned_cols=127 Identities=13% Similarity=-0.038 Sum_probs=105.6
Q ss_pred HhhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG 138 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~ 138 (228)
....+..+.++..+..+++. +|....+++++|.++...|++++|+..|++++++. ++++....++.+
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34567778888888888855 58889999999999999999999999999999983 333332338999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 139 RALALYEVGDREEAIAEMEDVSIS--------LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~--------~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
+|.++...|++++|+..|++++.. .+....++..+|.++..+ |++++|+..|++++++.+
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776 233347788999999885 589999999999999743
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=7.3e-12 Score=116.02 Aligned_cols=128 Identities=9% Similarity=-0.023 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-CHHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-DREEAIA 154 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-~~~~A~~ 154 (228)
.+.++.++..+++.+|++..+|+.+|.++.+.| +++++++.++++++++|.+.. ||.+++.++...| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~---aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc---HHHHHHHHHHHcCCChHHHHH
Confidence 577888888899999999999999999999999 779999999999999999999 9999999999999 9999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcCCCCCchhhhh
Q 027087 155 EMEDVSISLKGYPEVHAALAAALYVDK-------------HALLLAENQFTIATLLDPHYTDLSYVK 208 (228)
Q Consensus 155 ~~~~al~~~~~~p~~~~~la~~l~~~~-------------~~~~~A~~~~~~al~l~P~~~~~~~~~ 208 (228)
.+++++...+.+..+|.+++.++.... +.++++++.+.+++.++|++..+++..
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999998888888899999999988751 468999999999999999999876543
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.1e-11 Score=114.84 Aligned_cols=129 Identities=6% Similarity=-0.183 Sum_probs=120.3
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD----------FNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~----------~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
...++++..+..++..+|++..+|+.+|.++...|+ ++++++.++++++.+|++.. +|+++++++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Confidence 456788999999999999999999999999999998 99999999999999999999 99999999999
Q ss_pred cC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 146 VG--DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 146 ~g--~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
.| +++++++.+++++...+.+..+|.+++.++...+..+++++++++++++.+|++..+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 99 779999999999999999999999999999886558999999999999999999887553
No 136
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.35 E-value=2.9e-12 Score=92.71 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 027087 113 NKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFT 192 (228)
Q Consensus 113 ~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~ 192 (228)
++|+..|+++++.+|++.. +++++|.++...|++++|+..|++++...|.++.+++.+|.++... |++++|+..|+
T Consensus 2 ~~a~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML---LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 3689999999999999999 9999999999999999999999999999999999999999999885 58999999999
Q ss_pred HHHhcCCCCCchhhhhh
Q 027087 193 IATLLDPHYTDLSYVKD 209 (228)
Q Consensus 193 ~al~l~P~~~~~~~~~~ 209 (228)
++++++|+........+
T Consensus 78 ~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHhccccccHHHHHH
Confidence 99999998766544433
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=4.3e-12 Score=107.09 Aligned_cols=120 Identities=14% Similarity=-0.020 Sum_probs=106.2
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEA 152 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A 152 (228)
...+..+.|...+.+++..+|+....+...+..+...|+.++|++.|+++++++|++.. +++++|.++...|++++|
T Consensus 162 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~---~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAA---LATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHH---HHHHHHHHHHHcccHHHH
Confidence 44555666666666667888988888888899899999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 153 IAEMEDVSISLKGY--PEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 153 ~~~~~~al~~~~~~--p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+..|++++...|.+ +.++..++.++... |+.++|...|++++.
T Consensus 239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 239 LELLFGHLRXDLTAADGQTRXTFQEILAAL-GTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTGGGGHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHc-CCCCcHHHHHHHHHH
Confidence 99999999998988 78999999988885 577999999999986
No 138
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=9.4e-12 Score=101.40 Aligned_cols=121 Identities=14% Similarity=-0.055 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHHHh--------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVS--------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVGRALA 142 (228)
Q Consensus 76 ~~~~~a~~~~~~al~--------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~la~~ 142 (228)
+..+.|+..+.++++ .+|..+.+++++|.++...|++++|+..|++++++. ++++....++.++|.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344555666665553 348889999999999999999999999999999985 4443333389999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 143 LYEVGDREEAIAEMEDVSISL-----KGY---PEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~-----~~~---p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+...|++++|+..|++++... +.+ ..++..+|.++.. .|++++|+..|++++++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 999999999999999997763 323 4778889998888 56999999999999998
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.5e-11 Score=107.30 Aligned_cols=88 Identities=10% Similarity=-0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcCCHHHHH
Q 027087 112 FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP---EVHAALAAALYVDKHALLLAE 188 (228)
Q Consensus 112 ~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p---~~~~~la~~l~~~~~~~~~A~ 188 (228)
+++|+..|+++++++|++.. +++++|.++...|++++|+..|++++...+.+. ..+..+|.++....|++++|+
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~---~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFR---VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhh---hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34444445555555555555 556677777778888888888888865544433 235566665555567788888
Q ss_pred HHHHHHHhcCCCCC
Q 027087 189 NQFTIATLLDPHYT 202 (228)
Q Consensus 189 ~~~~~al~l~P~~~ 202 (228)
..|+++++++|++.
T Consensus 393 ~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 393 HHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHHHHSCCCCH
T ss_pred HHHHHHHhcCcccH
Confidence 88888887776543
No 140
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=109.09 Aligned_cols=127 Identities=14% Similarity=-0.005 Sum_probs=111.4
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc----CCH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQ---AIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV----GDR 149 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~---~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~----g~~ 149 (228)
..+.|+..+.++++++|+++.+++++|.++. ..|++++|++.|+++++++|++.. ++.++|..+... |++
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---LKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---HHHHHHHHHHHCC------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---HHHHHHHHHHHHHhhhhHH
Confidence 3578899999999999999999999998865 468889999999999999999998 899999877664 678
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
++|++.|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++..+++.
T Consensus 230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 899999999999999999999999999888 569999999999999999999887653
No 141
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1e-11 Score=102.87 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=104.4
Q ss_pred hhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCchhHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVEN--------YKDFAFSEYAR 136 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--------~P~~~~~~~a~ 136 (228)
...+..+.+...+..+++. ++....+++++|.++...|++++|+..|++++++ +|.... ++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~ 198 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK---TK 198 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH---HH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH---HH
Confidence 3456677778778777755 4788899999999999999999999999999998 555555 89
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------------------------------CCCH
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSISL-------------------------------------------------KGYP 167 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------------~~~p 167 (228)
+++|.++..+|++++|+..|++++... +.++
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 999999999999999999999997642 2234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
.++..+|.++... |++++|++.|++++++.|+
T Consensus 279 ~~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 279 TTLKNLGALYRRQ-GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhc
Confidence 6788899988885 5899999999999999875
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.32 E-value=7.5e-12 Score=96.96 Aligned_cols=98 Identities=13% Similarity=-0.007 Sum_probs=85.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAL- 184 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~- 184 (228)
+...|++++|+..|+++++.+|++.. +++++|.++...|++++|+..|++++...|.++.++..+|.+++...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSE---QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45689999999999999999999999 99999999999999999999999999999999999999999944436688
Q ss_pred -HHHHHHHHHHHhcCCCCCchhh
Q 027087 185 -LLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 185 -~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++|+..|+++++++|++...++
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999887655
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=4.4e-11 Score=86.39 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=92.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------chhHHHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF-------AFSEYARVGRALALYE 145 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~-------~~~~~a~~~la~~~~~ 145 (228)
...+..+.++..+..+++.+|+++.+++++|.++...|++++|+..|+++++++|++ .. +++++|.++..
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~~ 91 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK---AYARIGNSYFK 91 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH---HHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH---HHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999887 66 89999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 027087 146 VGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 179 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~ 179 (228)
.|++++|+..|++++...+ +++....++.+...
T Consensus 92 ~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 9999999999999977666 78777777766544
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.31 E-value=1.1e-11 Score=104.14 Aligned_cols=138 Identities=11% Similarity=0.042 Sum_probs=103.3
Q ss_pred CCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYK----DFAFSEYARVGRALALYE 145 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P----~~~~~~~a~~~la~~~~~ 145 (228)
...+.|+..+..++...+. ...+++++|.++..+|++++|+..|+++++... +......+++|+|.+|..
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 3557788888888864322 145789999999999999999999999985321 222222378999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcCCC
Q 027087 146 VGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTKHW 213 (228)
Q Consensus 146 ~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~ 213 (228)
+|++++|+..+++++...+.. +.+++.+|.++..+++.+++|++.|++++.+........+...+..+
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~l~~~ 282 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK 282 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGGGGTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999997765433 57889999999886546799999999999886655555554444433
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=8.4e-11 Score=100.98 Aligned_cols=127 Identities=9% Similarity=-0.128 Sum_probs=117.2
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----HHc---
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG--DFNKALQYFTLVVENYKDFAFSEYARVGRALAL----YEV--- 146 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~----~~~--- 146 (228)
...+.++.....++.++|++..+|+.+|.++...| ++++++..+++++..+|++.. +|+.++.++ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---IWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---HHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---HHHHHHHHHHHHHHhcccc
Confidence 45678899999999999999999999999999999 999999999999999999999 999999999 777
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCchhh
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALL--LAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~--~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++++++..+++++...|.+..++..++.++...+ .++ ++++.+++++++||.+-.+..
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 89999999999999999999999999999888754 677 999999999999999888754
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=2.3e-11 Score=85.70 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=83.5
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHc-CCH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD--FAFSEYARVGRALALYEV-GDR 149 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~-g~~ 149 (228)
...+..+.+...+..+++.+|++..+++++|.++...|++++|+..|+++++++|+ +.. +++++|.++... |++
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD---VWAAKADALRYIEGKE 93 (112)
T ss_dssp HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH---HHHHHHHHHTTCSSCS
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH---HHHHHHHHHHHHhCCH
Confidence 34566788999999999999999999999999999999999999999999999999 998 999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 027087 150 EEAIAEMEDVSISLKGY 166 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~ 166 (228)
++|++.+++++...|.+
T Consensus 94 ~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 94 VEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhhcccCC
Confidence 99999999996655543
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.9e-10 Score=94.92 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDR 149 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~ 149 (228)
.+.++..+.++++ ++++.+++++|.++.. .|++++|+..|+++++++ ++. +++++|.++.. .|++
T Consensus 22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN---GCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---HHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH---HHHHHHHHHhCCCCcccCH
Confidence 3444444444444 3444445555555555 555555555555554442 334 44555555555 5555
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcC
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYV----DKHALLLAENQFTIATLLD 198 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~----~~~~~~~A~~~~~~al~l~ 198 (228)
++|+..|++++.. .+++++..+|.++.. . +++++|+.+|+++++++
T Consensus 95 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 95 NKALQYYSKACDL--KYAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC
Confidence 5555555554322 244444445444443 2 24455555555555443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.29 E-value=1e-10 Score=91.46 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=106.7
Q ss_pred hhCCCchHHHHHHHHHHh------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCc-hhHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVS------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN---YKDFA-FSEYARVGRALA 142 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l---~P~~~-~~~~a~~~la~~ 142 (228)
...+..+.+...+..+++ ..+..+.+++++|.++...|++++|+..|++++++ .+++. ....+++++|.+
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV 116 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 345667888888888886 56778899999999999999999999999999998 45332 223478999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcC--CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 143 LYEVGDREEAIAEMEDVSISLK--GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~--~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+..+|++++|+..+++++...+ .++ ..+..+|.++.. .|++++|++.|++++++.....+..+
T Consensus 117 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 185 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EKNLLEAQQHWLRARDIFAELEDSEA 185 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999976543 233 345788888888 56899999999999998765555433
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.29 E-value=1.6e-11 Score=104.18 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=102.5
Q ss_pred hhCCCchHHHHHHHHHHhcC-----hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSR-----VS-DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALAL 143 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~-----p~-~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~ 143 (228)
...+..+.|+..+.+++++. +. .+.++.++|.++.. |++++|+..|++++++.|... ....++.++|.++
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 44566778888888887552 22 36788999999998 999999999999999987642 1123789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 144 YEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
..+|++++|+..|++++...+.+. ..+..++.++.. .|++++|+..|++++ ++|++...
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCCCCC
Confidence 999999999999999977655432 356667777776 468999999999999 99988764
No 150
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.28 E-value=9e-12 Score=87.42 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALY 178 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~ 178 (228)
.+++|.++...|++++|+..|+++++.+|++.. ++++++|.++..+|++++|+..|++++...|.++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 478899999999999999999999999999863 268999999999999999999999999988888877532
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 179 VDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+.+.++...|++++..+|+...
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCSS
T ss_pred ---HHHHHHHHHHHHHhccCccccc
Confidence 3578899999999999887654
No 151
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=5.7e-11 Score=103.03 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=105.9
Q ss_pred HhhCCCchHHHHHHHHHHhc-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSS-------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRAL 141 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~-------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~ 141 (228)
....+..+.|+..+..++++ .+..+.+++++|.++..+|++++|+..|++++++.+... ....+++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34566778888888888755 455677899999999999999999999999999876543 12237999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-----c-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 142 ALYEVGDREEAIAEMEDVSIS-----L-KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~-----~-~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
++..+|++++|+..|++++.. . +..+.++.++|.++..+ |++++|+..|++++++.+.
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999773 3 44458899999999884 5899999999999998654
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=9e-11 Score=87.35 Aligned_cols=126 Identities=10% Similarity=-0.042 Sum_probs=99.9
Q ss_pred hCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALY 144 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~ 144 (228)
..+..+.++..+..+++..++. +.+++++|.++...|++++|+..|++++++.+.... ...+++++|.++.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3455677888888887554432 358899999999999999999999999998765411 1237899999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 145 EVGDREEAIAEMEDVSISLKG--Y----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~~~--~----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..|++++|+..+++++...+. + +..+..++.++... |++++|++.+++++++...
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH
Confidence 999999999999999766432 2 25677889888885 5899999999999987654
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.27 E-value=4.3e-11 Score=100.58 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=91.0
Q ss_pred CCCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCchhH-HHHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVV---ENYKDFAFSE-YARVGRALALY 144 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al---~l~P~~~~~~-~a~~~la~~~~ 144 (228)
.+..+.|+..+..+++..++ .+.+++++|.++..+|++++|+..|++++ +..|++.... .+++|+|.+|.
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 34556777777777744322 25678888888888888888888888888 4455543111 26788888888
Q ss_pred HcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCCCchhh
Q 027087 145 EVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLA-ENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A-~~~~~~al~l~P~~~~~~~ 206 (228)
.+|++++|+..+++++...+.. ..+++++|.++..+ |++++| ..+|++++.+........+
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 8888888888888886654321 46777888888774 467888 7778888877554444333
No 154
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=1.1e-10 Score=100.29 Aligned_cols=130 Identities=6% Similarity=-0.112 Sum_probs=119.0
Q ss_pred hhCC--CchHHHHHHHHHHhcChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 027087 73 ATYD--PLTQAEKDASAAVSSRVSDALELLEKGREL----QAI---GDFNKALQYFTLVVENYKDFAFSEYARVGRALAL 143 (228)
Q Consensus 73 ~~~~--~~~~a~~~~~~al~~~p~~a~a~~~lG~~~----~~~---g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~ 143 (228)
..+. ..+.++.+...++..+|++..+|+.++.++ ... +++++++..++++++.+|.+.. +|+.++.++
T Consensus 78 ~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~---aW~~R~~vl 154 (306)
T 3dra_A 78 KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH---VWSYRKWLV 154 (306)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH
Confidence 3445 678889999999999999999999999999 777 8999999999999999999999 999999999
Q ss_pred HHcCCHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCCchhh
Q 027087 144 YEVGDRE--EAIAEMEDVSISLKGYPEVHAALAAALYVDKHA------LLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 144 ~~~g~~~--~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~------~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
...|+++ ++++.+++++...+.|-.++..++.++...+ + ++++++.++++|.++|++..+.+
T Consensus 155 ~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~ 224 (306)
T 3dra_A 155 DTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKCPQNPSTWN 224 (306)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence 9999999 9999999999999999999999999887754 4 89999999999999999998753
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=8.6e-11 Score=97.29 Aligned_cols=128 Identities=14% Similarity=-0.004 Sum_probs=105.9
Q ss_pred HhhCCCchHHHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCchhHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSS--------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----KDFAFSEYARVG 138 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~--------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----P~~~~~~~a~~~ 138 (228)
....+..+.+...+..+++. ++....+++++|.++...|++++|+..|++++++. ++++....++.+
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34567778888888888755 58889999999999999999999999999999985 444433348999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 139 RALALYEVGDREEAIAEMEDVSIS--------LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 139 la~~~~~~g~~~~A~~~~~~al~~--------~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+|.++...|++++|+..|++++.. .+..+..+..+|.++... |++++|+..|++++++.|.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ-GKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776 222346788899988885 5899999999999986543
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.26 E-value=1.8e-10 Score=99.86 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC-HHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAIGD--FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD-REEAIAE 155 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~--~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~-~~~A~~~ 155 (228)
+.++.++..++..+|++..+|+.++.++...|+ +++++..++++++++|.+.. +|.+++.++...|+ ++++++.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~---AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---CWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCcCHHHHHHH
Confidence 567777888889999999999999999999994 99999999999999999999 99999999999999 6999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 156 MEDVSISLKGYPEVHAALAAALYVDK-------------HALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 156 ~~~al~~~~~~p~~~~~la~~l~~~~-------------~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++++...|.|..++.+++.++.... +.++++++.+.+++.++|++..+.+
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999888762 4689999999999999999998753
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.25 E-value=1.5e-11 Score=104.34 Aligned_cols=126 Identities=14% Similarity=0.014 Sum_probs=104.7
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHcCCHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF--AFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~--~~~~~a~~~la~~~~~~g~~~ 150 (228)
...+..++|...+...+..+|++. ++|.+|.++.+.|+|++|+..|++++...+.+ .. +++++|.++..+|+++
T Consensus 113 ~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~---a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA---AGVAHGVAAANLALFT 188 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH---HHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH---HHHHHHHHHHHCCCHH
Confidence 345667777777777778899999 99999999999999999999999887643221 24 7999999999999999
Q ss_pred HHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 151 EAIAEMEDVSISL--KG-YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 151 ~A~~~~~~al~~~--~~-~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
+|+..|++++... |. .+++++++|.++..+ |+.++|+..|+++++.+|+ ..+
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc-HHH
Confidence 9999999995322 33 457999999999996 4889999999999999998 554
No 158
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.23 E-value=2e-10 Score=94.71 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~p 167 (228)
+|+++.+++.+|.++...|++++|+..|+++++ |++.. +++++|.++.. .|++++|+..|++++.. .++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~---a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS---GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYS 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCH
Confidence 578999999999999999999999999999998 88888 99999999999 99999999999999654 378
Q ss_pred HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcC
Q 027087 168 EVHAALAAALYV----DKHALLLAENQFTIATLLD 198 (228)
Q Consensus 168 ~~~~~la~~l~~----~~~~~~~A~~~~~~al~l~ 198 (228)
++++.+|.++.. . +++++|+..|+++++.+
T Consensus 75 ~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC
Confidence 999999998877 4 58999999999999985
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=7.3e-11 Score=102.37 Aligned_cols=124 Identities=14% Similarity=0.024 Sum_probs=103.9
Q ss_pred hhCCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch----hHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF----SEYARVGRALA 142 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~----~~~a~~~la~~ 142 (228)
...+..+.|...+..++++ ++..+.+++++|.++...|++++|+..|++++++.+.... ...+++++|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 4556788888888888865 4457899999999999999999999999999999655432 12378999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 143 LYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+..+|++++|+..|++++...+... .++.++|.++.. .|++++|+.+|++++++
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999977655332 578889999988 46999999999999995
No 160
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=2.3e-10 Score=99.26 Aligned_cols=131 Identities=13% Similarity=0.021 Sum_probs=106.6
Q ss_pred HhhCCCchHHHHHHHHHHhcC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CchhHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSR-------VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKD---FAFSEYARVGRAL 141 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~-------p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~---~~~~~~a~~~la~ 141 (228)
....+..+.|...+..+++.. +..+.+++++|.++...|++++|+..|++++++.+. ......+++++|.
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888877432 245778999999999999999999999999997542 2222347899999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 142 ALYEVGDREEAIAEMEDVSI-----SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~-----~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
++..+|++++|+..|++++. ..+..+.++..+|.++.. .|++++|+..|++++++.+....
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999977 455556889999999988 46899999999999999776443
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.22 E-value=5.3e-11 Score=100.97 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=104.9
Q ss_pred hhCCCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALAL 143 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~ 143 (228)
...+..+.+...+..++++.+. .+..+.++|.++..+|++++|+..|++++++.+... ....++.++|.+|
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456778888888888755432 367899999999999999999999999999965431 1234789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 144 YEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
.. |++++|+..|++++...+.. ..++.++|.++.. .|++++|+..|++++++.|+...
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCC
Confidence 99 99999999999998776543 3678889998888 56999999999999999876653
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.21 E-value=3.1e-11 Score=85.83 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=71.8
Q ss_pred hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 125 NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 125 l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
.+|+++. +++++|.+++.+|++++|+..|++++...|.++.+++.+|.++.. .|++++|++.|++++++.|+..+.
T Consensus 2 ~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPF---TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCch
Confidence 4799999 999999999999999999999999999999999999999999988 569999999999999999887776
Q ss_pred hhhhh
Q 027087 205 SYVKD 209 (228)
Q Consensus 205 ~~~~~ 209 (228)
....+
T Consensus 78 ~~~~~ 82 (100)
T 3ma5_A 78 KDLSE 82 (100)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65544
No 163
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.2e-10 Score=105.59 Aligned_cols=123 Identities=8% Similarity=-0.052 Sum_probs=101.5
Q ss_pred HHHHHHHHHHh-cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 80 QAEKDASAAVS-SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA-FSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 80 ~a~~~~~~al~-~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
.+...+.++++ .+|++...|+.+|.++...|++++|+..|+++++++|+++ . +|.++|.++.+.|++++|++.|+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchH---HHHHHHHHHHHhcCHHHHHHHHH
Confidence 77888888887 7999999999999999999999999999999999999874 5 78999999888999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 158 DVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 158 ~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
+++...+.+...+...+.+.+...|++++|+..|+++++.+|++....
T Consensus 381 ~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 381 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 996655555555555555444345688999999999999988877643
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=5.6e-10 Score=96.81 Aligned_cols=128 Identities=6% Similarity=-0.180 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGD----------FNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~----------~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
+..+.++.....++.+||++..+|+.++.++...|+ +++++..+++++..+|.+.. +|+.++.++..
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---aW~hR~wlL~~ 120 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TWHHRCWLLSR 120 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHhc
Confidence 456778999999999999999999999999998876 79999999999999999999 99999999999
Q ss_pred cCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 146 VGD--REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 146 ~g~--~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.|+ +++++..+++++...|.|..++...+.++...+..++++++.++++++.+|.+..+..
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 995 8999999999999999999999999998888553379999999999999999988744
No 165
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=1.3e-10 Score=100.76 Aligned_cols=125 Identities=17% Similarity=0.024 Sum_probs=107.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCchhHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDA----LELLEKGRELQAIGDFNKALQYFTLVVEN------YKDFAFSEYARVGRAL 141 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a----~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------~P~~~~~~~a~~~la~ 141 (228)
....+..+.++..+..+++.+|++. .+++.+|.++...|++++|+..|++++++ +|.... +++++|.
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~ 134 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK---SSGNLGN 134 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH---HHHHHHH
Confidence 3456778899999999999999876 58999999999999999999999999998 566666 8999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhcC
Q 027087 142 ALYEVGDREEAIAEMEDVSISL------KGYPEVHAALAAALYVDKHA-----------------LLLAENQFTIATLLD 198 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~------~~~p~~~~~la~~l~~~~~~-----------------~~~A~~~~~~al~l~ 198 (228)
++...|++++|+..|++++... +....++..+|.++... |+ +++|++.|++++++.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997763 22346888899988885 47 999999999999875
Q ss_pred CC
Q 027087 199 PH 200 (228)
Q Consensus 199 P~ 200 (228)
+.
T Consensus 214 ~~ 215 (411)
T 4a1s_A 214 RD 215 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.18 E-value=3.3e-10 Score=98.87 Aligned_cols=128 Identities=10% Similarity=-0.099 Sum_probs=116.4
Q ss_pred CCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHc-C-CHHH
Q 027087 75 YDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEV-G-DREE 151 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~-g-~~~~ 151 (228)
....+.++.....++.+||++..+|+.+|.++...| ++++++..+++++..+|++.. +|+.++.++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---VWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhcCCChHH
Confidence 345667899999999999999999999999999999 599999999999999999999 999999999998 8 9999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCchhh
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALL--------LAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~--------~A~~~~~~al~l~P~~~~~~~ 206 (228)
+++.+++++...|.|..++..++.++...+ .++ ++++.++++++++|.+..+..
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999998888888899999999887755 456 999999999999999888744
No 167
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=2e-10 Score=92.48 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=63.5
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cC
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG----DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VG 147 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g----~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g 147 (228)
...+.++..+.++++. +++.+++++|.++.. | ++++|+..|++++ +++++. +++++|.+|.. .+
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~---a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKS---GEIVLARVLVNRQAGAT 103 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHH---HHHHHHHHHTCGGGSSC
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHH---HHHHHHHHHHcCCCCcc
Confidence 3344555555555543 455666666666655 4 6666666666663 345555 66666666655 56
Q ss_pred CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 027087 148 DREEAIAEMEDVSISLKG--YPEVHAALAAALYVD---KHALLLAENQFTIATLL 197 (228)
Q Consensus 148 ~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l 197 (228)
++++|+..|++++...+. ++++++++|.++..- .+++++|+.+|++++++
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 666666666666222211 146666666655541 12556666666666665
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=7.9e-10 Score=86.32 Aligned_cols=109 Identities=11% Similarity=-0.003 Sum_probs=90.7
Q ss_pred hcCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 90 SSRV-SDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 90 ~~~p-~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
..+| ..+.+++.+|.++...|++++|+..|++++++. +.... ++.++|.++..+|++++|+..+++++..
T Consensus 19 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 19 LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR---ALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455 678999999999999999999999999999943 33444 8999999999999999999999999776
Q ss_pred ---cCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 163 ---LKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 163 ---~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.+.++ .++.++|.++... |++++|+..+++++++.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcc
Confidence 33343 5678889988885 589999999999998755433
No 169
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=3.4e-10 Score=102.70 Aligned_cols=122 Identities=11% Similarity=-0.081 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hcCCCchhHHHHHHHHHHHH
Q 027087 80 QAEKDASAAVSSRVSDALELLEKGRELQA-------IGDFN-------KALQYFTLVVE-NYKDFAFSEYARVGRALALY 144 (228)
Q Consensus 80 ~a~~~~~~al~~~p~~a~a~~~lG~~~~~-------~g~~~-------~Ai~~~~~Al~-l~P~~~~~~~a~~~la~~~~ 144 (228)
.+...+.+++..+|+++..|+++|..+.. .|+++ +|+..|+++++ ++|++.. .|+++|.++.
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~---l~~~~~~~~~ 332 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---LYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH---HHHHHHHHHH
Confidence 45667889999999999999999999986 79987 99999999997 8999999 9999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 027087 145 EVGDREEAIAEMEDVSISLKGYP-EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS 205 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~ 205 (228)
..|++++|+..|++++...|.++ .++..++.++... |++++|++.|+++++..|.....+
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCCchHHH
Confidence 99999999999999988777776 6888899887774 578999999999999988765543
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=1.6e-09 Score=90.96 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=100.4
Q ss_pred hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALAL 143 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~ 143 (228)
...+..+.+...+..+++..+.. ...++.+|.++...|++++|+..|++++++.+.... ...+++++|.+|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 34456667777777777655433 245678899999999999999999999987655411 123789999999
Q ss_pred HHcCCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 144 YEVGDREEAIAEMEDVS---ISLKGYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al---~~~~~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..+|++++|+..|++++ ...+.++ .+++++|.++.. .|++++|+..|++++++.++
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999997 4445543 578899999988 56999999999999998754
No 171
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.14 E-value=3.2e-10 Score=97.33 Aligned_cols=126 Identities=11% Similarity=-0.043 Sum_probs=100.0
Q ss_pred hhCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRA 140 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la 140 (228)
...+..+.+...+..+++..++. +.+++++|.++...|++++|+..|++++++.|+. .. ++.++|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la 274 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ---SCYSLG 274 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH---HHHHHH
Confidence 34566777777777777554433 3488999999999999999999999999887765 44 788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 141 LALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.++...|++++|+..|++++...+.. +.++..+|.++... |++++|+..|++++++.+...
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999997765433 35777888888874 589999999999998865543
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.13 E-value=5.3e-10 Score=83.08 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA---FSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY---- 166 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---- 166 (228)
..+.+++.+|.++...|++++|+..|++++++.+... ....++.++|.++...|++++|+..+++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 3467899999999999999999999999999876432 112378999999999999999999999997765532
Q ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 167 --PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 167 --p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
...+..+|.++.. .|++++|+..+++++++.+..
T Consensus 87 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHc
Confidence 3567888998888 569999999999999886543
No 173
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=3.2e-10 Score=94.06 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=66.6
Q ss_pred CCchHHHHHHHHHHhcChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVSSRVS------DALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRALAL 143 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~------~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la~~~ 143 (228)
+..+.+...+..+++..+. .+.+++++|.++...|++++|+..|++++++.++. .. ++.++|.++
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la~~~ 273 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ---SCYSLGNTY 273 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH---HHHHHHHHH
Confidence 4445555555555533222 12356666666666666666666666666665543 33 556666666
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 144 YEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
...|++++|+..+++++...+.. ..++..++.++... |++++|...|++++++.+.
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHh
Confidence 66666666666666664443321 13455566655553 3566666666666666554
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=4.4e-10 Score=93.19 Aligned_cols=124 Identities=17% Similarity=0.033 Sum_probs=104.8
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCchhHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVEN------YKDFAFSEYARVGRAL 141 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l------~P~~~~~~~a~~~la~ 141 (228)
....+..+.++..+..+++.+|++ +..++.+|.++...|++++|+..+++++++ .|.... ++.++|.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~l~~ 91 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK---ASGNLGN 91 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH---HHHHHHH
Confidence 345677889999999999999888 578899999999999999999999999988 344445 8999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 027087 142 ALYEVGDREEAIAEMEDVSISLKGYP------EVHAALAAALYVDKHA--------------------LLLAENQFTIAT 195 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~~~~p------~~~~~la~~l~~~~~~--------------------~~~A~~~~~~al 195 (228)
++...|++++|+..+++++...+... .++..+|.++... |+ +++|+..|++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999977655432 4778889988885 47 999999999998
Q ss_pred hcCC
Q 027087 196 LLDP 199 (228)
Q Consensus 196 ~l~P 199 (228)
++.+
T Consensus 171 ~~~~ 174 (338)
T 3ro2_A 171 SLVT 174 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=4.6e-10 Score=90.31 Aligned_cols=117 Identities=14% Similarity=-0.017 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHH----c
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYK--DFAFSEYARVGRALALYE----V 146 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P--~~~~~~~a~~~la~~~~~----~ 146 (228)
..+.++..+..+++ ++++.+++++|.++.. .+++++|+..|+++++..+ +++. +++++|.+|.. .
T Consensus 68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~---a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD---AQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH---HHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH---HHHHHHHHHHcCCCCC
Confidence 35566666776654 5678888999998887 8899999999999988877 3467 88999999988 8
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCC
Q 027087 147 GDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKH-----ALLLAENQFTIATLLDP 199 (228)
Q Consensus 147 g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~-----~~~~A~~~~~~al~l~P 199 (228)
+++++|+..|++++.. +.++.+.+++|.++..-.+ ++++|+.+|+++++...
T Consensus 143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8899999999998544 5677888889988776323 78999999999988754
No 176
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.12 E-value=2.7e-10 Score=98.77 Aligned_cols=131 Identities=8% Similarity=-0.083 Sum_probs=93.7
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDA------LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALA 142 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a------~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~ 142 (228)
....+..+.+...+..+++..++.. .+++++|.++..+|++++|+..|++++++.++... ...++.++|.+
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 312 (411)
T 4a1s_A 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT 312 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666777777777776555433 37788888888888888888888888888775411 01267888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 143 LYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+..+|++++|+..|++++...+.. ..++..+|.++.. .|++++|.+.|++++++.+....
T Consensus 313 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 313 YTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhccc
Confidence 888888888888888886654322 2467777887777 45788888888888888765443
No 177
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=8.1e-10 Score=95.79 Aligned_cols=131 Identities=8% Similarity=-0.031 Sum_probs=106.1
Q ss_pred hhCCCchHHHHHHHHHHhc------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSS------RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA----FSEYARVGRALA 142 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~------~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~----~~~~a~~~la~~ 142 (228)
...+..+.|+..+..+++. ++..+.+++++|.++...|++++|+..+++++++.+... ....+++++|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3456678888888888754 345788999999999999999999999999999876432 223478999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 027087 143 LYEVGDREEAIAEMEDVSISLKG--YP----EVHAALAAALYVDKHALLLAENQFTIATL-----LDPHYTDL 204 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~--~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~-----l~P~~~~~ 204 (228)
+..+|++++|+..|++++...+. ++ .++.++|.++..+ |++++|+..|+++++ .+|....+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 99999999999999999775442 22 5788899999885 589999999999999 66665443
No 178
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.11 E-value=4.3e-10 Score=96.52 Aligned_cols=125 Identities=17% Similarity=0.030 Sum_probs=105.4
Q ss_pred HhhCCCchHHHHHHHHHHhcChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSD----ALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRAL 141 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~----a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~ 141 (228)
....+..+.++..+..+++.+|++ +.+++.+|.++...|++++|+..|++++++. |.... ++.++|.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~la~ 95 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK---ASGNLGN 95 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHH
Confidence 345567888999999999998887 4689999999999999999999999999883 33444 8999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 027087 142 ALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHA--------------------LLLAENQFTIAT 195 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~--------------------~~~A~~~~~~al 195 (228)
++...|++++|+..+++++...+.. ..++..+|.++... |+ +++|+..|++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999997765532 25788899988885 47 999999999999
Q ss_pred hcCCC
Q 027087 196 LLDPH 200 (228)
Q Consensus 196 ~l~P~ 200 (228)
++...
T Consensus 175 ~~~~~ 179 (406)
T 3sf4_A 175 SLVTA 179 (406)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87443
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=4.8e-10 Score=97.83 Aligned_cols=130 Identities=7% Similarity=-0.141 Sum_probs=118.2
Q ss_pred hCC-CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHH
Q 027087 74 TYD-PLTQAEKDASAAVSSRVSDALELLEKGRELQAI-G-DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 74 ~~~-~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~-g-~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
.++ ..+.++.+...++..+|++..+|+.++.++... + +++++++.++++++++|.+.. +|..++.++...|+++
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~---AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH---TWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH---HHHHHHHHHHHHHHTT
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcccc
Confidence 344 467888888899999999999999999999988 8 999999999999999999999 9999999999999988
Q ss_pred --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCCCchhh
Q 027087 151 --------EAIAEMEDVSISLKGYPEVHAALAAALYVDKH------ALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 151 --------~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~------~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
++++.+++++...+.|..++..++.++...++ .++++++.+++++.++|++..+.+
T Consensus 177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~ 246 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN 246 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999998877553 279999999999999999988743
No 180
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=1.1e-09 Score=91.99 Aligned_cols=129 Identities=12% Similarity=-0.016 Sum_probs=100.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDAL------ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALAL 143 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~------a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~ 143 (228)
...+..+.+...+..++...+.+.. .++.+|.++...|++++|+..|++++++.+...++ ..++.++|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3456677777888877765544333 34468999999999999999999999976554331 22689999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 144 YEVGDREEAIAEMEDVSISLK---GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~---~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
..+|++++|+..|++++.... .+. .+++++|.++.. .|++++|+..+++++++.++..
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999975322 232 578899999988 4699999999999999876653
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.09 E-value=3.7e-09 Score=96.26 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=103.4
Q ss_pred hCCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHH
Q 027087 74 TYDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRA 140 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la 140 (228)
..+..++|+..+.+++ ..+|+-+..+.++|.+|..+|+|++|+..+++++++ .|+++.++..++|+|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456777888887777 345667788999999999999999999999999977 488888888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhc-----CCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 141 LALYEVGDREEAIAEMEDVSISL-----KGYP---EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-----~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+|..+|++++|+..|++++... +++| +...+++.++..+ +.+++|+..|+++.+..
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999997643 5667 4556777777774 58999999999987654
No 182
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.06 E-value=8.7e-10 Score=78.12 Aligned_cols=73 Identities=14% Similarity=-0.114 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 92 RVSDALELLEKGRELQAIGD---FNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~---~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
+|+++..++.+|.+++..++ .++|+..++++++++|++.. +++.+|..+++.|+|++|+..+++++...|.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---ALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987766 79999999999999999999 999999999999999999999999966666644
No 183
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=2.9e-09 Score=91.51 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS---EYARVGRALALYEVGDREEAIAEMEDVSISLKG--------YP 167 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~p 167 (228)
++++|.++...|++++|+..+++++++.|+.... ..++.++|.++...|++++|+..+++++...+. ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 4444444444455555555555544444332210 112344444444455555555554444333211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 168 EVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 168 ~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
..+.++|.+++. .|++++|+..+++++++.+.
T Consensus 136 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 136 FLVRIRAQLLWA-WARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence 233334444444 23445555555544444443
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=8.2e-11 Score=83.36 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=77.1
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHHHc
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDF------AFSEYARVGRALALYEV 146 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~------~~~~~a~~~la~~~~~~ 146 (228)
...+..+.|+..+..+++.+|+++.+++++|.++..+|++++|+..|+++++++|++ .. +++++|.++..+
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~ 91 (111)
T 2l6j_A 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK---LQYRLELAQGAV 91 (111)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH---HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH---HHHHHHHHHHHH
Confidence 355678899999999999999999999999999999999999999999999999998 77 899999999999
Q ss_pred CCHHHHHHHHHHH
Q 027087 147 GDREEAIAEMEDV 159 (228)
Q Consensus 147 g~~~~A~~~~~~a 159 (228)
|++++|+..++++
T Consensus 92 ~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 92 GSVQIPVVEVDEL 104 (111)
T ss_dssp HCCCCCSSSSSSC
T ss_pred HhHhhhHhHHHHh
Confidence 9999888777665
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=1.4e-08 Score=76.37 Aligned_cols=111 Identities=14% Similarity=-0.080 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCHHHHH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDREEAI 153 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~~~A~ 153 (228)
.+.++..+.++.+.+...+. +|.++...+.+++|+..|+++.+. +++. +++++|.+|.. .+++++|+
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGN---GCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHcCCCCCccHHHHH
Confidence 35567777777776644443 999999999999999999999886 7788 99999999999 89999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 027087 154 AEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLLDP 199 (228)
Q Consensus 154 ~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l~P 199 (228)
.+|+++... .++++.+++|.++..- .+++++|+.+|+++.+...
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999543 6899999999988771 2589999999999998743
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=3e-09 Score=72.47 Aligned_cols=72 Identities=24% Similarity=0.166 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
+++++|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+..|+++++++|++...+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999988 569999999999999999998776543
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=1.1e-08 Score=87.96 Aligned_cols=126 Identities=17% Similarity=0.070 Sum_probs=98.7
Q ss_pred hCCCchHHHHHHHHHHhcChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHH
Q 027087 74 TYDPLTQAEKDASAAVSSRVSD------ALELLEKGRELQAIGDFNKALQYFTLVVENYKD-----FAFSEYARVGRALA 142 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~~~p~~------a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-----~~~~~~a~~~la~~ 142 (228)
..+..+.+...+.++++..++. ..+++++|.++..+|++++|+..|++++++.+. ++....++.++|.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 3455677777777777554432 345789999999999999999999999998632 12223378899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 027087 143 LYEVGDREEAIAEMEDVSISLKGY-----PEVHAALAAALYVDKHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~~~~-----p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~ 200 (228)
+...|++++|+..+++++...+.. ...+..++.++... |++++|+..+++++++.+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Confidence 999999999999999997766542 25677888888874 6899999999999988543
No 188
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.91 E-value=3.4e-09 Score=89.80 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=96.9
Q ss_pred hcChhhHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHc-----CCHHH
Q 027087 90 SSRVSDALELLEKGRELQA-----IGD------FNKALQYFTLVVENYKD--FAFSEYARVGRALALYEV-----GDREE 151 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~-----~g~------~~~Ai~~~~~Al~l~P~--~~~~~~a~~~la~~~~~~-----g~~~~ 151 (228)
+.+|++++.++..|.+... .|+ ..+|...+++|+++||+ +.. ++..+|.+|... |+.++
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs---A~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA---VWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH---HHHHHHHHHHHSCTTTTCCHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH---HHHHHHHHHHhCCCccCCCHHH
Confidence 6678889999988887743 233 57899999999999999 566 899999999996 99999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-Cch
Q 027087 152 AIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY-TDL 204 (228)
Q Consensus 152 A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~-~~~ 204 (228)
|.++|++++.+.|+. .++++.+|..++...|++++|.+.++++++.+|+. +..
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 999999999999975 89999999988886679999999999999999985 443
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.89 E-value=3.4e-08 Score=88.63 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCC
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQAIG---DFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGD 148 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g---~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~ 148 (228)
...+.++..+..+++. +++.+++++|.++...| ++++|+..|+++++. +++. +++++|.+|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKA---AQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHcCCCCCCC
Confidence 3455666666666654 45667888888888766 888888888888876 5677 88999999988 889
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC
Q 027087 149 REEAIAEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 149 ~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l~P~ 200 (228)
+++|+.+|++++.. .++++++.+|.++..- .+++++|+.+|+++++.+|+
T Consensus 383 ~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999999998542 4688888899887761 25889999999999998854
No 190
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=2.5e-08 Score=70.51 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=67.8
Q ss_pred cCCCchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 126 YKDFAFSEYARVGRALALYEVGD---REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 126 ~P~~~~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
+|++++ .+..+|.+++..++ .++|...+++++...|.++.+.+.+|..++. .|+|++|+..|+++++.+|..+
T Consensus 2 ~p~~~~---~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTAT---QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHH---HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 688999 99999999987766 7999999999999999999999999999988 5699999999999999999944
Q ss_pred c
Q 027087 203 D 203 (228)
Q Consensus 203 ~ 203 (228)
.
T Consensus 78 ~ 78 (93)
T 3bee_A 78 D 78 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.87 E-value=2e-08 Score=89.94 Aligned_cols=114 Identities=19% Similarity=0.153 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-H--HHcCCHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQAI----GDFNKALQYFTLVVENYKDFAFSEYARVGRALA-L--YEVGDREE 151 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~----g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~-~--~~~g~~~~ 151 (228)
..++..+..+.+.++.++..++++|.+|... +++++|+..|+++. |+++. +++++|.+ + ...|++++
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---SWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---HHHHHHHHHHHSGGGCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---HHHHHHHHHHhCCCCCCHHH
Confidence 3444444445555555555555555555433 45555555555554 55555 55555555 2 24555555
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCch
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|+.+|++++ ...++++++++|.++.. | .++++|+.+|+++. +.+..+
T Consensus 270 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 270 MMKYLDNGR--AADQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 555555552 12345555555555542 2 25555666665555 444444
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.86 E-value=1.6e-08 Score=90.48 Aligned_cols=115 Identities=13% Similarity=0.032 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC-----CH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRE-L--QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG-----DR 149 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~-~--~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g-----~~ 149 (228)
.+.++..+..+. |+++.+++++|.+ + ...|++++|+..|+++.+ .+++. +++++|.+|. .| ++
T Consensus 233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPR---AELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHH---HHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHH-cCCCCCCCH
Confidence 455666666665 8999999999999 4 478999999999999885 45888 9999999998 56 99
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchhhh
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALAAALYVDK----HALLLAENQFTIATLLDPHYTDLSYV 207 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~----~~~~~A~~~~~~al~l~P~~~~~~~~ 207 (228)
++|+.+|+++. +.++++.+++|.++.. | .++++|..+|+++.+. .+..+.+.
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 99999999993 8889999999987765 3 4999999999999874 45665553
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.85 E-value=4.2e-08 Score=89.31 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH-
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP- 167 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p- 167 (228)
..+....+..+|+|++|+..|++++++ .|+++.+...+.|+|.+|..+|+|++|+..+++++... +.+|
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 445566678899999999999999987 37777766789999999999999999999999997643 4567
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087 168 --EVHAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL 204 (228)
Q Consensus 168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~ 204 (228)
..++++|.++.. +|++++|+..|++|+++ .|+++.+
T Consensus 392 ~a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 392 LGMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 567889998888 56999999999999985 5666654
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=2.1e-08 Score=87.89 Aligned_cols=129 Identities=14% Similarity=0.014 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCH----HHHHH----HHHH--HHHhcCCCchhHHHHHHHHHHHHHcC
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQAIGDF----NKALQ----YFTL--VVENYKDFAFSEYARVGRALALYEVG 147 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~----~~Ai~----~~~~--Al~l~P~~~~~~~a~~~la~~~~~~g 147 (228)
...+...+.+++++||+++.++-.++.++.....+ ...+. .++. ++..+|.++. ++..++.++...|
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~---~~~alal~~l~~g 291 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI---IYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH---HHHHHHHHHHhCC
Confidence 35667778888899999988888887777521111 11111 2222 2355677777 7888888888899
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhhcC
Q 027087 148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKDTK 211 (228)
Q Consensus 148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~~~ 211 (228)
++++|+..+++++.+.+ +...+..+|.++.. .|++++|++.|++|+.++|......|.+++-
T Consensus 292 d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~ 353 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGANTLYWIENGI 353 (372)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence 99999999999988763 56677777887776 6799999999999999999998777777643
No 195
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.84 E-value=4.3e-08 Score=70.21 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYK-------DFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE 168 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P-------~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~ 168 (228)
+...+.+|..++..|+|+.|+..|++|++..+ .... .+.++|.+++++|++++|+..+++++...|.++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~---i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS---VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45679999999999999999999999998752 2344 7899999999999999999999999999999988
Q ss_pred HHHHHH
Q 027087 169 VHAALA 174 (228)
Q Consensus 169 ~~~~la 174 (228)
+..+++
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 877776
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.84 E-value=1.8e-08 Score=70.17 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGYPE-VHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~-~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
.+++|.++...|++++|+..|++++...|.++. +++.+|.++..+ |++++|+..|+++++++|++...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 468899999999999999999999999999999 999999999885 5899999999999999999998763
No 197
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=2e-08 Score=77.38 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=44.3
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 86 SAAVSSRVSDALELLEKGRELQAIG---DFNKALQYFTLVVENY-K-DFAFSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 86 ~~al~~~p~~a~a~~~lG~~~~~~g---~~~~Ai~~~~~Al~l~-P-~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
...++.++.+.++.|++|.++.+.+ +.++++..++.+++.+ | +..+ .+|++|..++++|+|++|++++++++
T Consensus 22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd---~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD---YVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH---HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444555555555555555555 4445555555555555 4 3344 45555555555555555555555555
Q ss_pred HhcCCCHHHH
Q 027087 161 ISLKGYPEVH 170 (228)
Q Consensus 161 ~~~~~~p~~~ 170 (228)
+..|.+..+.
T Consensus 99 ~ieP~n~QA~ 108 (152)
T 1pc2_A 99 QTEPQNNQAK 108 (152)
T ss_dssp HHCTTCHHHH
T ss_pred hcCCCCHHHH
Confidence 5555554443
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.81 E-value=6.2e-08 Score=86.84 Aligned_cols=101 Identities=10% Similarity=-0.064 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH---HH
Q 027087 103 GRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP---EV 169 (228)
Q Consensus 103 G~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p---~~ 169 (228)
+......|+|++|+..|++++++ .|+++.+...+.|+|.+|..+|+|++|+..+++++... +.+| ..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 34444678999999999999985 57888777789999999999999999999999997643 4567 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL 204 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~ 204 (228)
++++|.++.. +|++++|+..|++|+++ .|+++.+
T Consensus 385 l~nLa~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 385 WLKLGRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7889998888 56999999999999986 4555443
No 199
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=6.4e-10 Score=94.32 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH----HHHHHHHHHHH
Q 027087 104 RELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG-YP----EVHAALAAALY 178 (228)
Q Consensus 104 ~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~p----~~~~~la~~l~ 178 (228)
.++...|+|++|++.|+.++..+|++. +++.+|.++++.|++++|+..|+++ ... ++ ++++++|.++.
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a---~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL----VAWMKAVVYGAAERWTDVIDQVKSA---GKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTG---GGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHcCCHHHHHHHHHHh---hccCCcccHHHHHHHHHHHHH
Confidence 567788999999999998888777655 5889999999999999999999988 332 33 58999999988
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CC-CCchhh
Q 027087 179 VDKHALLLAENQFTIATLLD--PH-YTDLSY 206 (228)
Q Consensus 179 ~~~~~~~~A~~~~~~al~l~--P~-~~~~~~ 206 (228)
.+ |++++|+.+|++++... |. +.++.+
T Consensus 183 ~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 183 NL-ALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HT-TCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred HC-CCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 84 59999999999999654 54 333444
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.78 E-value=2.1e-07 Score=83.36 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cC
Q 027087 76 DPLTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VG 147 (228)
Q Consensus 76 ~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g 147 (228)
...+.++..+..+++. +++.+++.+|.++.. .+++++|+..|+++.+. +++. +++++|.+|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQ---AQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHcCCCCCC
Confidence 3456667777777664 567888888888888 88888888888888764 5677 88888888888 78
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 027087 148 DREEAIAEMEDVSISLKGYPEVHAALAAALYVD---KHALLLAENQFTIATLL 197 (228)
Q Consensus 148 ~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~---~~~~~~A~~~~~~al~l 197 (228)
++++|+..|+++.. ..++++++.+|.++..- .+++++|+++|+++++.
T Consensus 130 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 88888888888843 35678888888877651 24778888888888775
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=7.2e-08 Score=74.23 Aligned_cols=95 Identities=15% Similarity=-0.007 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHhcCCHH
Q 027087 111 DFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVG---DREEAIAEMEDVSISL-K-GYPEVHAALAAALYVDKHALL 185 (228)
Q Consensus 111 ~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~p~~~~~la~~l~~~~~~~~ 185 (228)
....+.+.|.+.++.++.+.+ +.+++|+++.+.+ +.++++..+++++... | .+.+.++++|..++. .++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~---~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHH
T ss_pred HHHHHHHHHHHHHccCCCcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHH
Confidence 456788899999998998898 9999999999998 7779999999997766 4 345899999999988 56999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhh
Q 027087 186 LAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 186 ~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
+|+++++++|+++|++.++...++
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998766433
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.68 E-value=1.7e-07 Score=84.08 Aligned_cols=89 Identities=8% Similarity=-0.011 Sum_probs=76.3
Q ss_pred CCCchHHHHHHHHHH--------hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAV--------SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRAL 141 (228)
Q Consensus 75 ~~~~~~a~~~~~~al--------~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~ 141 (228)
....++|+..+.+++ ..+|.-+..+.++|.+|..+|+|++|+..|++++++ -|++++++..++|+|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 345677888888877 335666788999999999999999999999999976 4888888888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc
Q 027087 142 ALYEVGDREEAIAEMEDVSISL 163 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~ 163 (228)
+|..+|++++|+..|++++...
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999996643
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.68 E-value=3.3e-07 Score=82.01 Aligned_cols=105 Identities=13% Similarity=0.002 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH-
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISL-----KGYP- 167 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~p- 167 (228)
..+...-+..+|+|++|+..|++++++ .|+++.+...+.|+|.+|..+|+|++|+..+++++... +.+|
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 344455677899999999999999975 47777766689999999999999999999999997543 4667
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCch
Q 027087 168 --EVHAALAAALYVDKHALLLAENQFTIATLL-----DPHYTDL 204 (228)
Q Consensus 168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l-----~P~~~~~ 204 (228)
..++++|.++.. +|++++|+..|++|+++ .|+++.+
T Consensus 370 ~a~~l~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 370 RGVQVMKVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 457889998888 56999999999999986 5555544
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.65 E-value=5.2e-07 Score=80.68 Aligned_cols=104 Identities=13% Similarity=-0.055 Sum_probs=83.3
Q ss_pred hCCCchHHHHHHHHHHh--------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCchhHHHHHHHH
Q 027087 74 TYDPLTQAEKDASAAVS--------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVEN-----YKDFAFSEYARVGRA 140 (228)
Q Consensus 74 ~~~~~~~a~~~~~~al~--------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-----~P~~~~~~~a~~~la 140 (228)
.....+.++..+.++++ .+|.-+..+.++|.+|..+|+|++|+..+++++++ -|+++.++..++|+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 34566777888888873 35666788999999999999999999999999976 488888877899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhc-----CCCHH---HHHHHHHHH
Q 027087 141 LALYEVGDREEAIAEMEDVSISL-----KGYPE---VHAALAAAL 177 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-----~~~p~---~~~~la~~l 177 (228)
.+|..+|++++|+..|++++... +++|. ...+|+.+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999997653 45663 334444443
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.60 E-value=2.7e-07 Score=78.19 Aligned_cols=84 Identities=14% Similarity=-0.015 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhcChh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHH-cCCH
Q 027087 79 TQAEKDASAAVSSRVS--DALELLEKGRELQAI-----GDFNKALQYFTLVVENYKDF-AFSEYARVGRALALYE-VGDR 149 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~--~a~a~~~lG~~~~~~-----g~~~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~-~g~~ 149 (228)
..+.....+++++||+ +..+|..+|.+|... |+.++|.++|++|++++|+. .+ +++.+|..+.. +|++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id---~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD---HHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH---HHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhcCCH
Confidence 4556667888999999 778999999999995 99999999999999999975 88 99999999988 5999
Q ss_pred HHHHHHHHHHHHhcCC
Q 027087 150 EEAIAEMEDVSISLKG 165 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~ 165 (228)
++|.+.+++++...+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999665554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1.9e-06 Score=64.60 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhcChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH----cCCH
Q 027087 78 LTQAEKDASAAVSSRVSDALELLEKGRELQA----IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE----VGDR 149 (228)
Q Consensus 78 ~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~----~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~----~g~~ 149 (228)
.+.++..+.++.+. +++.+++++|.+|.. .+|+++|+..|+++.+. +++. +.+++|.+|.. .+++
T Consensus 41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~---a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQD---GCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHH---HHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHH---HHHHHHHHHHCCCCCCcCH
Confidence 34477888888775 788999999999999 99999999999999876 7788 99999999999 9999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 150 EEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 150 ~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
++|+.+|+++... .++++...++
T Consensus 114 ~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 114 KQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHh
Confidence 9999999999432 4566665554
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.50 E-value=1.6e-06 Score=74.28 Aligned_cols=118 Identities=9% Similarity=-0.017 Sum_probs=74.7
Q ss_pred HhhCCCchHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CchhHHHHHHHH--HH
Q 027087 72 AATYDPLTQAEKDASAAVSSRV--SDALELLEKGRELQAIGDFNKALQYFTLVVENYKD-----FAFSEYARVGRA--LA 142 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p--~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-----~~~~~~a~~~la--~~ 142 (228)
....+..+.|+..+.+.+..+| ++.+++...+.++.++|+.+.|.+.+++..+.+|+ +. ...+++ ++
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----~l~~Laea~v 185 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----MILNLAESYI 185 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----HHHHHHHHHH
Confidence 3344667777777777777765 77777888888888888888888888777777772 22 344443 33
Q ss_pred HHHcC--CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 143 LYEVG--DREEAIAEMEDVSISLKG--YPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 143 ~~~~g--~~~~A~~~~~~al~~~~~--~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
....| ++++|...|+++....|. .+..+++ ++.. .|++++|++.++.+++.
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HTCHHHHHHHHHHHHSH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cCCHHHHHHHHHHHHHh
Confidence 55445 777777777777333332 1233333 4444 35777777777766665
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=9.6e-07 Score=63.03 Aligned_cols=71 Identities=20% Similarity=0.010 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLK-------GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY 206 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 206 (228)
..+.+|..++..|+|+.|+.+|++++...+ ..++++..+|.+++.+ |++++|+..++++++++|++..+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 578999999999999999999999987652 2358899999999995 5899999999999999999977643
No 209
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.43 E-value=1.6e-06 Score=74.25 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027087 81 AEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYK--DFAFSEYARVGRALALYEVGDREEAIAEMED 158 (228)
Q Consensus 81 a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P--~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~ 158 (228)
++..+.+.++.++.+...++.+|.++...|++++|++.+.+.+..+| ++.+ ++..++.++..+|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le---a~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE---LLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666766555667778999999999999999999999999887 7788 899999999999999999999999
Q ss_pred HHHhcCC----CHHHHHHHHHH--HHHh-cCCHHHHHHHHHHHHhcCCC
Q 027087 159 VSISLKG----YPEVHAALAAA--LYVD-KHALLLAENQFTIATLLDPH 200 (228)
Q Consensus 159 al~~~~~----~p~~~~~la~~--l~~~-~~~~~~A~~~~~~al~l~P~ 200 (228)
+....+. +-.....++.+ .... ++++.+|...|+++.+..|+
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 8554441 12445555544 3332 35899999999999988886
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.9e-06 Score=73.79 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGY------PEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.+.++|.++...|+|++|+..+++++...... .+.+..++.++.. .|++++|+..|++++.+.+..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcC
Confidence 56788999999999999999999886654321 2677788888877 458999999999998876543
No 211
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.9e-06 Score=70.62 Aligned_cols=120 Identities=6% Similarity=-0.040 Sum_probs=89.6
Q ss_pred CCchHHHHHHHHHHh------cChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHH
Q 027087 76 DPLTQAEKDASAAVS------SRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY------KDFAFSEYARVGRALAL 143 (228)
Q Consensus 76 ~~~~~a~~~~~~al~------~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~------P~~~~~~~a~~~la~~~ 143 (228)
+..+.+...+..++. ..+..+..+.++|.++...|+|++|+..+++++... +.... ++.++|.++
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 185 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD---VHLLESKVY 185 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH---HHHHHHHHH
Confidence 445666666666653 234457889999999999999999999999998763 22234 789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 144 YEVGDREEAIAEMEDVSISLK---GYP----EVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~---~~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
..+|++++|...|++++...+ ..+ ..+..+|..+.. .+++++|..+|.++++..+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE-DKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhh
Confidence 999999999999999966543 222 233344444444 5799999999999987643
No 212
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.23 E-value=1.7e-05 Score=58.97 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCC-H----HHHHHHHHHHHHhc
Q 027087 110 GDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE---AIAEMEDVSISLKGY-P----EVHAALAAALYVDK 181 (228)
Q Consensus 110 g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~-p----~~~~~la~~l~~~~ 181 (228)
.......+.|.+.+..++...+ +.+++|+++...++..+ ++..++.+ ...+ | +.++.++..++..
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~---~~F~yAw~Lv~S~~~~d~~~GI~lLe~l---~~~~~p~~~Rd~lY~LAvg~ykl- 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRTRYNDDIRKGIVLLEEL---LPKGSKEEQRDYVFYLAVGNYRL- 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHTTSSSHHHHHHHHHHHHHH---TTTSCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhccCCCcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHH---HhcCCcchHHHHHHHHHHHHHHh-
Confidence 3455667778888777777777 88999999988887766 88888888 4444 4 7788888888884
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 182 HALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 182 ~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
|+|++|+.+++.+|+++|++.++.-.+.
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5889999999999999998887755443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.16 E-value=4.2e-06 Score=73.25 Aligned_cols=75 Identities=11% Similarity=-0.097 Sum_probs=68.2
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE 168 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~ 168 (228)
..+|.++.++..++..+...|++++|+..+++|++++|+ .. ++..+|.++...|++++|++.|++++++.|..+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~---a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WL---NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 667899999999999999999999999999999999975 55 7899999999999999999999999888786653
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.06 E-value=4.1e-05 Score=76.85 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..+++.+|+++|.++...|++++|+++|.++ +++. ++++.|.++.+.|++++|++.|..+..
T Consensus 1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---ay~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---SYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567889999999999999999999999886 7777 899999999999999999999988743
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.96 E-value=4e-05 Score=68.70 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI--------------- 161 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--------------- 161 (228)
.+|.++|..+...|+|++|+..|.++ . .|..+|.++.++|+|++|++.++++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~---n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 191 (449)
T ss_dssp --------------CTTTHHHHHHHT--------T---CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------h---hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC
Confidence 36666666666666666666666654 2 356666666666666666666666600
Q ss_pred ----------hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhh---hhhcCCCChhHHHHHHHh
Q 027087 162 ----------SLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSY---VKDTKHWPPSLVSSLRHF 224 (228)
Q Consensus 162 ----------~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~---~~~~~~~~~~~~~~~~~~ 224 (228)
.+-.+|+-...+... |...|++++|+..+++++.+++.+..... +---+--++++.+.++.+
T Consensus 192 ef~lA~~~~l~L~~~ad~l~~lv~~-Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHADELEELINY-YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHTTTTTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCHhhHHHHHHH-HHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 011233332223333 34457999999999999999987654322 111122355555555544
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.92 E-value=5.2e-06 Score=74.43 Aligned_cols=104 Identities=13% Similarity=-0.036 Sum_probs=43.6
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
+...+..++++.++..+.+ +..++.+...++.+|.+.|+++++++.++. |+. . +|.++|..++..|+|++
T Consensus 71 ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~---a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFING-----PNN-A---HIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTC-----C--------------------CTTT
T ss_pred HHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-H---HHHHHHHHHHHcCCHHH
Confidence 4456667777776666665 444578889999999999999999988853 654 4 79999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 152 AIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 152 A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
|+..|.++ ..+..++.+++.+ |+|++|++.|+++
T Consensus 141 A~~~Y~~a--------~n~~~LA~~L~~L-g~yq~AVea~~KA 174 (449)
T 1b89_A 141 AKLLYNNV--------SNFGRLASTLVHL-GEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHh--------hhHHHHHHHHHHh-ccHHHHHHHHHHc
Confidence 99999988 3667789989884 5899999999999
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.91 E-value=0.00012 Score=68.93 Aligned_cols=111 Identities=8% Similarity=-0.083 Sum_probs=90.1
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 83 KDASAAVSSRVSDALELLEKGRELQAIGDFNKAL-QYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 83 ~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai-~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..+.+++...|.++..|+..+..+...|+.++|+ ..|++++...|.+.. .|+.++......|++++|...|++++.
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~---Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV---LAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577888889999999999999999999998997 999999999998887 788899999999999999999999976
Q ss_pred hc-----------CC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 162 SL-----------KG-----------YPEVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 162 ~~-----------~~-----------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.+ |. .+.++..+..+.... +..+.|+..|.+|++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 53 32 124566666655554 4679999999999887
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.90 E-value=8.3e-05 Score=55.20 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCchhHHHHHHHHHHHHHcCCHHHHHHHH
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNK---ALQYFTLVVENY-K-DFAFSEYARVGRALALYEVGDREEAIAEM 156 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~---Ai~~~~~Al~l~-P-~~~~~~~a~~~la~~~~~~g~~~~A~~~~ 156 (228)
...+......++.+..+.|+++.++.+.++... +|..++..+..+ | ...+ .+|.+|..++++|+|++|+..+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd---~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---YVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHH---HHHHHHHHHHHhhhHHHHHHHH
Confidence 334445556677888999999999999888887 999999998876 5 3455 6999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHH
Q 027087 157 EDVSISLKGYPEVHAA 172 (228)
Q Consensus 157 ~~al~~~~~~p~~~~~ 172 (228)
+.+|...|.+..+...
T Consensus 98 ~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999999876553
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.84 E-value=0.00024 Score=71.47 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--------- 165 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------- 165 (228)
+...++++|..+...|+|++|+..|+++ . .|..+|.+|.++|++++|++.++++ ...
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~---ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 1259 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------h---HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHH
Confidence 3355677888888888888888888885 3 4788888888888888888888887 222
Q ss_pred -------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh--h-hhhcCCCChhHHHHHHH
Q 027087 166 -------------------YPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLS--Y-VKDTKHWPPSLVSSLRH 223 (228)
Q Consensus 166 -------------------~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~--~-~~~~~~~~~~~~~~~~~ 223 (228)
+|+....++..| ...|.+++|+..++++|.++|.+.... + +-..+--++.+.+.++-
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yY-e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYY-QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 223333334433 446899999999999999998776543 1 11212345555555544
Q ss_pred h
Q 027087 224 F 224 (228)
Q Consensus 224 ~ 224 (228)
|
T Consensus 1339 f 1339 (1630)
T 1xi4_A 1339 F 1339 (1630)
T ss_pred H
Confidence 3
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.79 E-value=0.00019 Score=67.71 Aligned_cols=124 Identities=6% Similarity=-0.076 Sum_probs=80.7
Q ss_pred CchHHH-HHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC-----------CchhH
Q 027087 77 PLTQAE-KDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENY-----------KD-----------FAFSE 133 (228)
Q Consensus 77 ~~~~a~-~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~-----------P~-----------~~~~~ 133 (228)
..+.+. ..+.+++...|.+...|+..+......|+++.|...|++++..- |. +..
T Consensus 358 ~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-- 435 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY-- 435 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH--
Confidence 344554 66777778888888888888888888888888888888887641 42 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 134 YARVGRALALYEVGDREEAIAEMEDVSISLK-GYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 134 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+|...+....+.|+.+.|.+.|.+++...+ .....+...+.+-+..+++++.|+..|+++++..|++..
T Consensus 436 -vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 436 -VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 566666666667777777777777744312 223444444444444344467777777777777666554
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.58 E-value=0.00062 Score=52.01 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=90.1
Q ss_pred cChhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 91 SRVSDALELLEKGRELQAIGDF------NKALQYFTLVVENYKDFAF-----SEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 91 ~~p~~a~a~~~lG~~~~~~g~~------~~Ai~~~~~Al~l~P~~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+|+|++.|+..-..+.+.|+. +.-++.|++|+..-|-... =.|.|.+.+.. ...+|.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999999988999 8999999999988775321 12456666654 5669999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 160 SISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 160 l~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+...+.++.+|...+..-.. +|+.+.|++.+.+++.+.|...+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELS-QGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHhccCCCcHH
Confidence 87767778889988987777 56899999999999999997654
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.55 E-value=0.0015 Score=58.97 Aligned_cols=117 Identities=17% Similarity=-0.020 Sum_probs=89.5
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHH--------------------
Q 027087 82 EKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRAL-------------------- 141 (228)
Q Consensus 82 ~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~-------------------- 141 (228)
...+.+++...|.++..|++.+..+...|+.++|...|++++.. |.+.. .++..+.
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~---l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF---LSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH---HHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH---HHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 45678888889999999999999999999999999999999999 98765 3333222
Q ss_pred --------------------HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 027087 142 --------------------ALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHY 201 (228)
Q Consensus 142 --------------------~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~ 201 (228)
.+.+.|+.+.|...|+++ ...+.....+...+.+-+..+++.+.|+..|+.+++..|+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 223466788899999998 32223445555556666555656899999999999988876
Q ss_pred Cc
Q 027087 202 TD 203 (228)
Q Consensus 202 ~~ 203 (228)
++
T Consensus 354 ~~ 355 (493)
T 2uy1_A 354 TL 355 (493)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.36 E-value=0.0014 Score=50.72 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC----------------------chhHHHHHHHHHHHHHcCCHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYK---DF----------------------AFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P---~~----------------------~~~~~a~~~la~~~~~~g~~~ 150 (228)
+.+++.+|.+++..|+|..|+..|++|+.+.- .+ .+ ..|.++.||.++|+++
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~E---lkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIE---VKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHH---HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHH---HHHHHHHHHHHHCCHH
Confidence 45789999999999999999999999876532 11 14 5799999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 151 EAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
+|+..++.+ -.-...|.+...||..+
T Consensus 140 ~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 140 DAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 999999886 11224677777777643
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.36 E-value=0.0042 Score=46.89 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 027087 93 VSDALELLEKGRELQAIGDFN---KALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEV 169 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~---~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~ 169 (228)
.-.....|+++.++.+..+.+ ++|..++..+..+|.... . -+|.+|..++++|+|++|.++.+.+|...|.|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R-d-cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR-E-CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH-H-HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh-H-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 445677777777777665544 577777777777775433 1 46777777788888888888777777777777655
Q ss_pred HH
Q 027087 170 HA 171 (228)
Q Consensus 170 ~~ 171 (228)
..
T Consensus 114 ~~ 115 (144)
T 1y8m_A 114 GA 115 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.28 E-value=0.0019 Score=48.23 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 027087 95 DALELLEKGRELQAIGDF---NKALQYFTLVVENYKDF-AFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVH 170 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~---~~Ai~~~~~Al~l~P~~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~ 170 (228)
.....|+.+.++.+..+. .++|..++..+..+|.. .+ -+|.+|..++++|+|++|.+..+.++...|.|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd---~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRE---CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 567788888888776654 46888888888888744 44 578888888888888888888888877777776554
Q ss_pred H
Q 027087 171 A 171 (228)
Q Consensus 171 ~ 171 (228)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.11 E-value=0.015 Score=43.77 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 128 DFAFSEYARVGRALALYEVGDRE---EAIAEMEDVSISLKGYP-EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 128 ~~~~~~~a~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~p-~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
-..+ +.+++|+++....+.+ +++..++..++..+... +.++.++..++.+ |+|++|+++.+.+|+++|++.+
T Consensus 37 vs~~---t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl-~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQ---SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHH
Confidence 3456 8999999999987754 89999999977666554 8999999999995 5999999999999999999988
Q ss_pred hhhhh
Q 027087 204 LSYVK 208 (228)
Q Consensus 204 ~~~~~ 208 (228)
+.-.+
T Consensus 113 A~~Lk 117 (144)
T 1y8m_A 113 VGALK 117 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.006 Score=47.23 Aligned_cols=95 Identities=16% Similarity=0.025 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCH-
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFS------EYARVGRALALYEVGDREEAIAEMEDVSISLK---GYP- 167 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~p- 167 (228)
+++.-...+...|.|+.|+...+.++.+..++.++ .-+++.+|.+++..|+|..|...|+++|.... +++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46777788899999999999999987765433320 11578899999999999999999999865432 111
Q ss_pred ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 027087 168 ---------------------EVHAALAAALYVDKHALLLAENQFTI 193 (228)
Q Consensus 168 ---------------------~~~~~la~~l~~~~~~~~~A~~~~~~ 193 (228)
+..+-++.|+..+ +++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l-~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL-KQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHT-TCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHH-CCHHHHHHHHhc
Confidence 6778889999885 588999996553
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.07 E-value=0.0055 Score=45.67 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhhhhh
Q 027087 135 ARVGRALALYEVGDR---EEAIAEMEDVSISLKGY-PEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDLSYVKD 209 (228)
Q Consensus 135 a~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~-p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~~ 209 (228)
+.+++|+++....+. .+++..++..++..+.. -+.++.++..++.+ |+|++|+++.+.+|+++|++..+.-.+.
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 899999999998765 47999999997766544 38899999999995 5999999999999999999998765443
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.48 E-value=0.14 Score=46.27 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVEN--YKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-LKGYPEVHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~p~~~~ 171 (228)
|...|..+-..+.+.|++++|+..|++..+. .|+. . .|..+-..|.+.|+.++|.+.|++.... +..+...+.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-R---SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-H---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-c---eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5667888889999999999999999998775 3553 3 5788888999999999999999999442 223456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
.+-.++.. .|+.++|.+.|++..+.
T Consensus 180 ~Li~~~~~-~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 180 ALLKVSMD-TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-CCCHHHHHHHHHHHHHh
Confidence 77777777 56999999999988764
No 230
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.39 E-value=0.027 Score=51.10 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAAL 177 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l 177 (228)
.+..+|.+......++.|..+|.+|+.+.|++.. .++.+|.+....|+.-+|+-+|-+++.....++.+..++...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 4678899999999999999999999999999999 9999999999999999999999999766666778887777655
Q ss_pred HH
Q 027087 178 YV 179 (228)
Q Consensus 178 ~~ 179 (228)
-.
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.36 E-value=0.057 Score=47.15 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc-------hhH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFA-------FSE------------YARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~-------~~~------------~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
...|......|+.++|++.+++|+.+-.... .|. .+...++..+...|++++++..+++++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555667999999999999998863321 110 123356677888999999999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 161 ISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 161 ~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
...|.+...+..+-.+++.. |+..+|++.|+++-+
T Consensus 199 ~~~P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLS-DRQSDALGAYRRVKT 233 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 88888888888888888884 578999999988744
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.035 Score=52.80 Aligned_cols=59 Identities=19% Similarity=0.039 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
.+..-+.-+..+|+|+-|+..-++|+...|+... .|+.|+.+|..+|+|+.|+-.+...
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444466677899999999999999999999999 9999999999999999999888775
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.61 E-value=0.051 Score=47.43 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
...+...+...|++++++..+++++..+|-+.. ++..+-.+|+..|+..+|++.|++....
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~---~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREP---LWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345577788999999999999999999999999 8999999999999999999999998443
No 234
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.60 E-value=0.084 Score=47.47 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKD-FAFSEYARVGRALALYEVG-DREEAIAEMEDVSISLKGYPEVHAALA 174 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~-~~~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~p~~~~~la 174 (228)
..|...+....+.|+.+.|...|+++ ..|. ... .+...+...+..| +.+.|...|+.++...+.+|+.+..+.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~~~---v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGVGPH---VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCCHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCChH---HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34555555556678889999999998 3443 333 5566666666655 689999999999888888887766666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 027087 175 AALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 175 ~~l~~~~~~~~~A~~~~~~a 194 (228)
..... .|+.+.|+..|+++
T Consensus 362 d~e~~-~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 362 LFLLR-IGDEENARALFKRL 380 (493)
T ss_dssp HHHHH-HTCHHHHHHHHHHS
T ss_pred HHHHH-cCCHHHHHHHHHHH
Confidence 55544 34677777777776
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.53 E-value=0.22 Score=41.45 Aligned_cols=118 Identities=16% Similarity=0.013 Sum_probs=78.6
Q ss_pred hhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHcCCHHH
Q 027087 73 ATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVG-RALALYEVGDREE 151 (228)
Q Consensus 73 ~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~-la~~~~~~g~~~~ 151 (228)
.+-...++++......++.+|.|+.....+-..++-.|+|+.|++.++.+.+++|+... .-.. +..+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~---~a~~yr~lI~-------- 76 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLVK-------- 76 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHH--------
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH---HHHHHHHHHH--------
Confidence 45567788888888899999999999999999999999999999999999999998765 2211 21211
Q ss_pred HHHHHHHHHHhcC------CCHHHHHH-H-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 152 AIAEMEDVSISLK------GYPEVHAA-L-AAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 152 A~~~~~~al~~~~------~~p~~~~~-l-a~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
|+. +++.+..-. ..|..+.. + ........|+.++|.+.-.++++..|...
T Consensus 77 aE~-~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 77 AAQ-ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHH-HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111 222211111 12222222 1 11111224688999999999999987644
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.45 E-value=0.3 Score=38.17 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-c--------
Q 027087 93 VSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-L-------- 163 (228)
Q Consensus 93 p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~-------- 163 (228)
|+.++-...++..++-.|+|..++-.+.+ -+-.. +.+-...||...++|..|+..++..+.. +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~T---s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCT---SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 33345567778889999999888876643 33345 6777889999999999999999998521 1
Q ss_pred --------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 027087 164 --------KGYPEVHAALAAALYVDKHALLLAENQFTIATLLDPHYTDL 204 (228)
Q Consensus 164 --------~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~~ 204 (228)
|.|-+..+.+-..+..+.|+.+||+.+|......+|=++..
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 22334444443444455678899999999998888866554
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.57 E-value=0.51 Score=39.23 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=48.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 105 ELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 105 ~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
.+.+.|+.++|++.....++.+|.+.+ .+..+-..+.-.|+++.|.+.++-.....|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~---~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 356778899999999999999999988 8888888999999999999988888655553
No 238
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.37 E-value=1.8 Score=38.90 Aligned_cols=118 Identities=8% Similarity=-0.067 Sum_probs=83.1
Q ss_pred CCCchHHHHHHHHHHhc--ChhhHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhc--CCCchhHHHHHHHHH
Q 027087 75 YDPLTQAEKDASAAVSS--RVSDALELLEKGRELQAIG---------DFNKALQYFTLVVENY--KDFAFSEYARVGRAL 141 (228)
Q Consensus 75 ~~~~~~a~~~~~~al~~--~p~~a~a~~~lG~~~~~~g---------~~~~Ai~~~~~Al~l~--P~~~~~~~a~~~la~ 141 (228)
.+..+.|...+....+. .| +...|..+-.++.+.+ +.++|.+.|++..+.. |+.. .+..+-.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~----tyn~lI~ 113 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA----TFTNGAR 113 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH----HHHHHHH
Confidence 35566777777666532 33 4445555545554433 4789999999887653 5433 6888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 142 ALYEVGDREEAIAEMEDVSIS-LKGYPEVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~-~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+.+.|+.++|.+.|+++... +..+...+..+-..+.. .|+.++|.+.|++..+..
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcC
Confidence 999999999999999998432 22345566666666766 569999999999998753
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.2 Score=44.30 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHH---
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEVH--- 170 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~~--- 170 (228)
..++..+|..+.+.||+++|++.|.++.............+++...++...+++..+...++++...... +++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4568899999999999999999999998876555433336777788888999999999999999554433 33322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 171 -AALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 171 -~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
...|.++.. .++|.+|-..|-.++.-.
T Consensus 211 k~~~gl~~l~-~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLA-VRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGG-TSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hChHHHHHHHHHHHhccC
Confidence 223333333 478999999998887653
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.47 E-value=1.4 Score=34.26 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=36.0
Q ss_pred HhhCCCchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 72 AATYDPLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 72 a~~~~~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
+++.+..+.|...+... ++...|-.+|......|+++-|+.+|+++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 55666666666665432 56778999999999999999999999885
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.18 E-value=0.95 Score=39.64 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHHHH---
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKD--FAF-SEYARVGRALALYEVGDREEAIAEMEDVSISL---KGYPEVH--- 170 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~--~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~p~~~--- 170 (228)
..+|..|...|+|.+|+..+.+.++--.. +.. ---.+..-..+|..+|++.++...|.++.... ..+|...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999998774332 111 00135666778999999999999999884332 2556322
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 027087 171 AALAAALYV-DKHALLLAENQFTIATLL 197 (228)
Q Consensus 171 ~~la~~l~~-~~~~~~~A~~~~~~al~l 197 (228)
...++.++. ..++|.+|-..|-++++-
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 223344444 467999999999888754
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.92 E-value=0.44 Score=36.29 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPE 168 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~ 168 (228)
...|...+.. ...+|.++|.+.|+.+++++..++. .|...|....++|+.+.|.+.+.+++...+..-+
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAK---iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAF---VHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 3445555644 5669999999999999999888877 8999999999999999999999999665554443
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.90 E-value=1.3 Score=41.00 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
++...|-++|..+.+.|+++.|+.+|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666666666666666666666654
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.80 E-value=1.2 Score=43.86 Aligned_cols=97 Identities=10% Similarity=-0.123 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHH
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVE-----NYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKG--YPEV 169 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-----l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~p~~ 169 (228)
..+..+-..+.+.|+.++|...|++..+ ..|+-. .|+.+-..|.+.|+.++|.+.|++... ... |.-.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdvv----TYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvT 202 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD----MYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHh----HHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHH
Confidence 3577778889999999999999976532 456644 688899999999999999999999933 333 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 170 HAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 170 ~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
+..+-.++...|+..++|.+.|++..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 56666667775544678889898887753
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.44 E-value=0.57 Score=43.48 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=36.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 106 LQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 106 ~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
....|++++|.+..+ .-++.. .|.++|..+.+.|+++.|+++|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~---~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEM---KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHh---HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345667776666543 335566 7999999999999999999999997
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.33 E-value=3.2 Score=32.46 Aligned_cols=71 Identities=14% Similarity=0.012 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--c---------------CCCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVEN--Y---------------KDFAFSEYARVGRALALYEVGDREEAIAEME 157 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l--~---------------P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 157 (228)
..-..+-...++.+.++|..|+..++..++- + |.+. ++-+..+|.++.+.|+-+||+..+.
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk--EfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE--EFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH--HHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 3444566689999999999999999999932 2 2233 3667889999999999999999999
Q ss_pred HHHHhcCCCH
Q 027087 158 DVSISLKGYP 167 (228)
Q Consensus 158 ~al~~~~~~p 167 (228)
......+..+
T Consensus 139 ~Sf~~~~lf~ 148 (242)
T 3kae_A 139 RSFGKSFLFS 148 (242)
T ss_dssp HHHHHCCCHH
T ss_pred hhcCCccccc
Confidence 8865555444
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.32 E-value=3.8 Score=38.91 Aligned_cols=114 Identities=11% Similarity=-0.131 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------cCCCchhH-------HHHHHHH
Q 027087 79 TQAEKDASAAVSSRVSDALELLEKGRELQ--AI-GDFNKALQYFTLVVEN--------YKDFAFSE-------YARVGRA 140 (228)
Q Consensus 79 ~~a~~~~~~al~~~p~~a~a~~~lG~~~~--~~-g~~~~Ai~~~~~Al~l--------~P~~~~~~-------~a~~~la 140 (228)
+.++..+.+....+|.....+ ....+.. .. .+--+|+....++++- .+.+.... -.+...+
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 557777778888888765433 2222222 22 3345677777777642 23332100 0233446
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 027087 141 LALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIA 194 (228)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~a 194 (228)
..+...|+|+-|+++.++++...|.+-..|+.|+.+|..+ |+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l-~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK-EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh-ccHHHHHHHHhcC
Confidence 6677899999999999999999999999999999999995 5999999865544
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.85 E-value=0.82 Score=41.31 Aligned_cols=66 Identities=18% Similarity=0.074 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 027087 77 PLTQAEKDASAAVSSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYE 145 (228)
Q Consensus 77 ~~~~a~~~~~~al~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~ 145 (228)
....|..+|..+..++|++...++.+|.+....|+.-+|+-+|-+++....-++. +..|+...+..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~---a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA---ASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh---HHHHHHHHHHH
Confidence 3568888999999999999999999999999999999999999999988777888 89999887764
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.59 E-value=9 Score=33.72 Aligned_cols=101 Identities=11% Similarity=-0.024 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVEN-YKDFA---FSEYARVGRALALYEVGDREEAIAEMEDVSI---SLKGYP 167 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l-~P~~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~p 167 (228)
.+.....++.++...|++.+|...+.....- .-... .+. .+.....++...+++.+|...++++.. ..+.+|
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve-~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ-FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 4555678899999999999999999887532 11111 112 356667788899999999999999732 233445
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 168 E----VHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 168 ~----~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+ .....|..+.. .++|.+|-.+|..+++.
T Consensus 215 ~lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 3 22333444444 56899998888888764
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.49 E-value=8.6 Score=33.50 Aligned_cols=60 Identities=18% Similarity=0.033 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 027087 138 GRALALYEVGDREEAIAEMEDVSISLKG--YP----EVHAALAAALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 138 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~p----~~~~~la~~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
.+|..|+..|+|.+|.+.+.+++..... +. +.+..-..++.. .+++.++...|+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhh
Confidence 6899999999999999999999777654 22 555555666666 458999999999987654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.24 E-value=9.3 Score=37.77 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcC--------------------CCchhHHHHHHHHHHHHHcCCHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVVE-NYK--------------------DFAFSEYARVGRALALYEVGDRE 150 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~-l~P--------------------~~~~~~~a~~~la~~~~~~g~~~ 150 (228)
-+.++...|.+|.++...|++++|..+|+++-. +.. .+....| |+....++.+.|.++
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~Y-Y~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCY-YLHLSKKLFEESAYI 916 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHH-HHHHHHHHHHTSCCH
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHH-HHHHHHHHHHcCCHH
Confidence 345556679999999999999999999988721 001 1111234 666777888889999
Q ss_pred HHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHhcCCHHHHHHHH
Q 027087 151 EAIAEMEDVSISLKGY-PE----VHAALAAALYVDKHALLLAENQF 191 (228)
Q Consensus 151 ~A~~~~~~al~~~~~~-p~----~~~~la~~l~~~~~~~~~A~~~~ 191 (228)
.+++..+.++.....+ ++ .+..+-...... ++|++|-..+
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL 961 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHH
Confidence 9999999997766543 32 334444444453 5788886633
No 252
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=79.65 E-value=7.6 Score=29.52 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--ch---hHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDF--AF---SEYAR-VGRALALYEVGDREEAIAEMEDVSISLKGYP 167 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~--~~---~~~a~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~p 167 (228)
-+..|..++..|+|=+|-+.++.+....++. .. .+-++ ..-|..+.+.|+...|...+++++..+...+
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999998877665 11 11123 3345556778999999999999988776654
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.35 E-value=7.4 Score=35.97 Aligned_cols=59 Identities=19% Similarity=0.045 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
..+..+.++ +.||++.|...|++.-.-..+... +.|-+|.++..+|+.++|...|+++.
T Consensus 288 ~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r---~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 288 IERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDE---WRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHH---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHccccccccHh---HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334445544 569999999999775443233445 67888999999999999999998873
No 254
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=77.15 E-value=4.9 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+..+-.++..+.+.|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445667888888888888888888864
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.05 E-value=29 Score=32.03 Aligned_cols=83 Identities=12% Similarity=0.008 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Q 027087 109 IGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAE 188 (228)
Q Consensus 109 ~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~ 188 (228)
.+...++...+.++.....++.. .....+.++ +.|+++.|...|+++-......+...+-+|.++.. .|+.++|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~---~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g~~~~a~ 339 (618)
T 1qsa_A 265 NDVTDEQAKWRDDAIMRSQSTSL---IERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAK 339 (618)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHH---HHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHH
T ss_pred cCCChHHHHHHHhccccCCChHH---HHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cCCHHHHH
Confidence 34355777778876654444333 333344544 56999999999988722222345778889998877 45779999
Q ss_pred HHHHHHHh
Q 027087 189 NQFTIATL 196 (228)
Q Consensus 189 ~~~~~al~ 196 (228)
..|+++..
T Consensus 340 ~~~~~~a~ 347 (618)
T 1qsa_A 340 EILHQLMQ 347 (618)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999876
No 256
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.55 E-value=5.5 Score=26.69 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
.+...|.-.-+.|+|++|+..|..+++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356666666777777777777777654
No 257
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.62 E-value=22 Score=34.51 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=14.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 027087 176 ALYVDKHALLLAENQFTIATLLD 198 (228)
Q Consensus 176 ~l~~~~~~~~~A~~~~~~al~l~ 198 (228)
-+++..+.++.+++..+.||+.-
T Consensus 905 ~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 905 KKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHHhhc
Confidence 35555667777777777777643
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=73.50 E-value=29 Score=26.67 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
|.+..|.+ ....|+++.|.+..+.. ++.. -|..+|..-...|+++-|+.+|.++
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~---~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSI---TWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHH---HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHH---HHHHHHHHHHHcCChHHHHHHHHHh
Confidence 44556665 45789999999987664 5566 7999999999999999999999987
No 259
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=72.30 E-value=9.8 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
..+|..+...|++++|+.+|-+|+...|+-.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 56799999999999999999999999888654
No 260
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.26 E-value=7.4 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+...|.-.-+.|+|++|+..|..+++
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555566666666666655543
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.89 E-value=4.5 Score=35.42 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGY---PEVHAALAAALYVDKHALLLAENQFTIATLLDP 199 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---p~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P 199 (228)
++..+|..|++.|++++|.+.|.++....... -+.....-.+... .+++..+...++++..+-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhh
Confidence 68899999999999999999999985543322 2666666665656 3589999999999976643
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.97 E-value=8 Score=35.06 Aligned_cols=109 Identities=8% Similarity=-0.036 Sum_probs=52.1
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHH-----hcCCCchhHHHHHHHHHHHHHcCCHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFT----------LVVE-----NYKDFAFSEYARVGRALALYEVGDREEAIA 154 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~----------~Al~-----l~P~~~~~~~a~~~la~~~~~~g~~~~A~~ 154 (228)
.+|+=.+..||-.+.++...|+..+...... .+++ .|.+-.. =.++.+-..|...+.|++|..
T Consensus 175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa--~l~nllLRnYL~~~~y~qA~~ 252 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKA--MLINLILRDFLNNGEVDSASD 252 (523)
T ss_dssp ----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHH--HHHHHHHHHHHHSSCSTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhH--HHHHHHHHHHHccCcHHHHHH
Confidence 3456677788888888888887766432222 2221 1222111 134555667888999999999
Q ss_pred HHHHHHHhcCCC----H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 155 EMEDVSISLKGY----P---EVHAALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 155 ~~~~al~~~~~~----p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
...++. .|.. . ..++++|.+... .++|.+|.+++..|++.-|....
T Consensus 253 lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 253 FISKLE--YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHhcCc--CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchh
Confidence 999982 3322 1 234566777766 56999999999999998887654
No 263
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=68.01 E-value=10 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
.+...+.-.-..|+|++|+..|..+++
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555666777777777666654
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.80 E-value=32 Score=25.77 Aligned_cols=52 Identities=15% Similarity=-0.036 Sum_probs=22.7
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 144 YEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
..+|+-|+-.+.+...+.-.+.+|+....++.+|... |+..+|.+.+.+|.+
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Kl-g~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRV-GDERDATTLLIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHh-cchhhHHHHHHHHHH
Confidence 3444455554555544222222345555555544443 244555554444443
No 265
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=66.97 E-value=11 Score=25.75 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+...+.-.-..|+|++|+..|..+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555666666777777777766654
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=63.65 E-value=14 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+...+.-.-..|+|++|+..|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555556677777777777777654
No 267
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=62.86 E-value=26 Score=23.88 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFAF---SEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
+..|..++..|+|=+|-+.++.+-...|+... .+-+...-|..+.+.|+. |...+++++..+...
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 44566677777777777777777666654211 011222233344455666 666677765555443
No 268
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=62.30 E-value=22 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCch
Q 027087 97 LELLEKGRELQAIGDFNKALQYFTLVVENYKDFAF 131 (228)
Q Consensus 97 ~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~ 131 (228)
.-+|-+|..+...++|.+|.+.+.+|+...|....
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 34688899999999999999999999999887653
No 269
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=62.26 E-value=14 Score=34.27 Aligned_cols=48 Identities=29% Similarity=0.245 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCC
Q 027087 98 ELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGD 148 (228)
Q Consensus 98 a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~ 148 (228)
.....+...+..|+|.-|.+..+.++..+|++.. |+..++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~---a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRA---ARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHH
Confidence 3456678888999999999999999999999999 99999998887763
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=61.83 E-value=12 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
+...+.-.-..|+|++|+..|..+++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555666666666666544
No 271
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.28 E-value=9.9 Score=26.22 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087 100 LEKGRELQAIGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 100 ~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
..+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 5679999999999999999999998877643
No 272
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=57.78 E-value=57 Score=32.29 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCCHHHHH
Q 027087 95 DALELLEKGRELQAIGDFNKALQYFTLVVENY--KDFAFSEYARVGRALALYEVGDR-EEAIAEMEDVSISLKGYPEVHA 171 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~--P~~~~~~~a~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~p~~~~ 171 (228)
|...|..+-..+.+.|+.++|++.|++..+.. ||-. .|..+-.++.+.|+. ++|.+.|++... ....|+...
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv----TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vt 238 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL----SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALF 238 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHH
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhh
Confidence 66778888899999999999999999987654 6543 577777788999985 789999999933 344566543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 027087 172 ALAAALYVDKHALLLAENQFTIATLLDPHYTD 203 (228)
Q Consensus 172 ~la~~l~~~~~~~~~A~~~~~~al~l~P~~~~ 203 (228)
+-+.+ ..++=...++.+-+++|++..
T Consensus 239 Y~~ll------~~~eR~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 239 TAVLL------SEEDRATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHSCC------CHHHHHHHHHHHGGGCCCCCC
T ss_pred ccccc------ChhhHHHHHHHHHHhCcccCC
Confidence 22221 112223445555556777664
No 273
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.08 E-value=11 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVE 124 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~ 124 (228)
...+|.-+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34556666667777777777776654
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.64 E-value=46 Score=32.85 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------
Q 027087 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY--------------- 166 (228)
Q Consensus 102 lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------- 166 (228)
+...+...|.++-+.+ .+...|.++. ..|-+|.++...|++++|..+|+++...+..+
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~---~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPI---AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHH---HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445667777776654 3455788877 78999999999999999999999872211110
Q ss_pred ------HH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 027087 167 ------PE-VHAALAAALYVDKHALLLAENQFTIATLLDPHYT 202 (228)
Q Consensus 167 ------p~-~~~~la~~l~~~~~~~~~A~~~~~~al~l~P~~~ 202 (228)
.. .++.....+++..+.++.+++.-+.|++..+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 933 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC
Confidence 00 1223334466666789999999999998765443
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.55 E-value=18 Score=32.73 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----ch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVENYKDF----AF-SEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~----~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
+..+..+-..|...+.|++|.....++. .|.. .+ +-| +|-+|.++..+++|.+|.+++..+++..|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY-~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARY-FFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4455566777889999999999999984 4543 12 224 6778999999999999999999996655543
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.86 E-value=24 Score=24.22 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
+-.++..+...|+|++||++.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567788889999999999998884
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.79 E-value=97 Score=29.94 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
.++-.-|.+|.++...|++++|..+|++|
T Consensus 838 ~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344455555555555555555555554
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.78 E-value=22 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
+...|.-.-..|+|++|+..|.+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444455556777777777777773
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.53 E-value=85 Score=24.56 Aligned_cols=70 Identities=10% Similarity=-0.162 Sum_probs=50.1
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..||.....|...+..+ ..+...++.+.|.-.....=....+. -|...|..+...|++++|.+.|+..+.
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSL-FYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566566666665544 23447788999988877665544422 377788889999999999999999933
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.61 E-value=26 Score=23.17 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 137 VGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al 160 (228)
...|.-.-+.|+|++|+..|.+++
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444456677887777777773
No 281
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.71 E-value=35 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=21.4
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+...+.+..+.+.|...-..|+-+.|++.|++.+
T Consensus 16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3344455556677776666777777776666654
No 282
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.84 E-value=38 Score=24.15 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.+.+.|+..-+.|+-+.|+..|++.+.
T Consensus 24 ~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 24 LFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 455566666666777777777766644
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.61 E-value=70 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
...+|..+...|++++|..+|-+|+...+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 34567777777777777777777744333
No 284
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=41.51 E-value=39 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+...|.-.-..|+|++|+..|.+++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555677888888888888854
No 285
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=41.08 E-value=98 Score=24.68 Aligned_cols=52 Identities=13% Similarity=-0.140 Sum_probs=33.0
Q ss_pred HcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 145 EVGDREEAIAEMEDVSIS-----LKGYP---EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 145 ~~g~~~~A~~~~~~al~~-----~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
..|+.+.|...|+.+... .|.+| ....+.+.++|...++.++|....++++.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356666777777776442 23344 45556667777777777777777777755
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.33 E-value=44 Score=25.94 Aligned_cols=39 Identities=8% Similarity=-0.191 Sum_probs=31.3
Q ss_pred CCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 027087 127 KDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGY 166 (228)
Q Consensus 127 P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 166 (228)
|....+-| .|-+|..+...++|.+|.+.+.+|++..+.+
T Consensus 9 ~~~q~v~Y-~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 9 STAQRVTY-KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHH-HHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 33333446 7889999999999999999999998876654
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.04 E-value=30 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
...+|.=+...|+|+.|+.+|+.++..+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 46677788889999999999999966554
No 288
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=38.58 E-value=49 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.141 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+..++...+.-+.-..+.|+|++|.+.++++-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677778888888889999999999888863
No 289
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=38.18 E-value=50 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+..++...+.-+.-..+.|+|++|.+.++++-
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677777777888888899999988888863
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.16 E-value=46 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
...|.-.-..|+|++|+..|.+++.
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444556777777777777744
No 291
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.08 E-value=1.6e+02 Score=25.62 Aligned_cols=72 Identities=15% Similarity=-0.014 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 027087 94 SDALELLEKGRELQAI--GDFNKALQYFTLVVENYKDFAF--SEYARVGRALALYEVGDREEAIAEMEDVSISLKG 165 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~--g~~~~Ai~~~~~Al~l~P~~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 165 (228)
..+.++-|+|.+-... .....++..|.+++...-.+.. ..|.+.-+|-.+++.+++.+|+..+-++-..+..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3466777777765432 2222378888888776432111 1267888999999999999999999888554443
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.21 E-value=39 Score=29.92 Aligned_cols=65 Identities=12% Similarity=-0.085 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC
Q 027087 101 EKGRELQAIGDFNKALQYFTLVVENYK--------DFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS-LKGY 166 (228)
Q Consensus 101 ~lG~~~~~~g~~~~Ai~~~~~Al~l~P--------~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 166 (228)
++=.+|++.|+..-+...++..-...+ ....+-| +|-+|..+...++|.+|.+++..|++. .+.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y-~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEY-RYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEee-eHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345678899999999888865533322 1122345 788999999999999999999999887 5644
No 293
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.17 E-value=1.3e+02 Score=22.52 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 99 LLEKGREL-QAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 99 ~~~lG~~~-~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+++++.-+ ..+|+-|+=.+.+...+.-++-++. .++.+|.+|.+.|+..+|.+.+.++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~---~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSAS---ILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChH---HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 56666544 5889998888888886666666677 8999999999999999999999999
No 294
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=37.09 E-value=1.1e+02 Score=21.53 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 027087 101 EKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVD 180 (228)
Q Consensus 101 ~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~ 180 (228)
.++.+-.-...+++|...-+- ++..++ .+ .+..-+...+...|+|++|....+.. . .|+..-.++.+-+..
T Consensus 12 E~AL~gTG~H~HqEA~tIAdw-L~~~~~-~E--~v~lIR~sSLmNrG~Yq~Al~l~~~~---c--~pdlepw~ALce~rl 82 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAEW-LHLKGE-EE--AVQLIRLSSLMNRGDYASALQQGNKL---A--YPDLEPWLALCEYRL 82 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH-HHHTTC-HH--HHHHHHHHHHHHTTCHHHHHHHHTTS---C--CGGGHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHH-HHhCCc-HH--HHHHHHHHHHHcchhHHHHHHhcCCC---C--CchHHHHHHHHHHhc
Confidence 344444445566666544433 444555 33 14556666777777777777666554 2 453333333333442
Q ss_pred cCCHHHHHHHH
Q 027087 181 KHALLLAENQF 191 (228)
Q Consensus 181 ~~~~~~A~~~~ 191 (228)
|.-+++...+
T Consensus 83 -Gl~s~le~rL 92 (116)
T 2p58_C 83 -GLGSALESRL 92 (116)
T ss_dssp -TCHHHHHHHH
T ss_pred -ccHHHHHHHH
Confidence 3434444433
No 295
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.05 E-value=53 Score=21.54 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 137 VGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 137 ~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
...|.-.-..|+|++|+..|.+++.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444567888888888888744
No 296
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.26 E-value=99 Score=21.05 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 94 SDALELLEKGRELQAIGDFNKALQYFTLVVEN 125 (228)
Q Consensus 94 ~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l 125 (228)
+++.....-|.-+++.++|.+|...|+++..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34445555566666666666666666666543
No 297
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=34.85 E-value=60 Score=22.79 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
+..++...+.-+.-..+.|+|++|.+.++++
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777788888888999999999988886
No 298
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.71 E-value=1.2e+02 Score=21.20 Aligned_cols=54 Identities=20% Similarity=0.045 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 102 KGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 102 lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
++.+-.-...+++|...-+- ++..++ .+ .+..-+...+...|+|++|....+..
T Consensus 12 ~AL~gTG~H~HqEA~tIAdw-L~~~~~-~E--~v~lIR~sSLmNrG~Yq~Al~l~~~~ 65 (115)
T 2uwj_G 12 LALAGSGQHCHEEALCIAEW-LERLGQ-DE--AARLIRISSLANQGRYQEALAFAHGN 65 (115)
T ss_dssp HHHHHHTTTCHHHHHHHHHH-HHHTTC-HH--HHHHHHHHHHHHTTCHHHHHGGGTTC
T ss_pred HHHHHccchHHHHHHHHHHH-HHhCCc-HH--HHHHHHHHHHHcchhHHHHHHhcCCC
Confidence 33333444555666444332 344555 33 14455556666677777766555444
No 299
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.46 E-value=51 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 138 GRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 138 ~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..|.-.-..|+|++|+..|.+++.
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 333344456788888888877754
No 300
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=32.45 E-value=1.3e+02 Score=26.52 Aligned_cols=49 Identities=10% Similarity=-0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 113 NKALQYFTLVVENYKDF--------AFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 113 ~~Ai~~~~~Al~l~P~~--------~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
+.-++.++.|+..-|.. ....-|+..+|.+|+.+|++++|+...++++.
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555665554432 11112456667777777777777777777743
No 301
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.36 E-value=68 Score=22.94 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=27.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 92 RVSDALELLEKGRELQAIGDFNKALQYFTLV 122 (228)
Q Consensus 92 ~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~A 122 (228)
+..++...+.-+.-..+.|+|++|.+.++++
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678888888888899999999999999887
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.22 E-value=1.4e+02 Score=22.43 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=43.1
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
..|+.....|...+... + ++.+.|.......=....+. -|...|..+...|++.+|.+.|+..+.
T Consensus 60 knD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~Al-fY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQ-FYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555556666555442 3 36667777666554433311 477788888999999999999999944
No 303
>2vh3_A Ranasmurfin, RSF-1; LTQ, bisltq, unknown function; HET: DAH TY2; 1.16A {Polypedates leucomystax} PDB: 2vh3_B*
Probab=31.52 E-value=66 Score=21.43 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhhhhhcCCCChhHHHHHHHhhc
Q 027087 182 HALLLAENQFTIATLLDPHYTDLSYVKDTKHWPPSLVSSLRHFIT 226 (228)
Q Consensus 182 ~~~~~A~~~~~~al~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
.+|+.|.+.|..+++-.---...-.+++ -++-..++|.+|+.
T Consensus 47 enyeraaedfdsavkctgckegvdlheg---npelieegfekfla 88 (113)
T 2vh3_A 47 ENYERAAEDFDSAVKCTGCKEGVDLHEG---NPELIEEGFEKFLA 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCCCCTT---CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcccCcccccccccC---CHHHHHHHHHHHHH
Confidence 4567777777777765433333333444 45566677777763
No 304
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.04 E-value=2.2e+02 Score=25.18 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 95 DALELLEKGRELQAIGDFN--KALQYFTLVVENYKDFAF--SEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g~~~--~Ai~~~~~Al~l~P~~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
.+.++-|+|.+-...--.. .++..|.+++...-.+.. ..|.|.-+|-.+++.+++.+|+..+-++-..+.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 3455566665544321111 366777777665422110 126788889999999999999999988855444
No 305
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.67 E-value=1.9e+02 Score=25.08 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVVE---NYKDFAF-SEYARVGRALALYEVGDREEAIAEMEDVSI 161 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~---l~P~~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 161 (228)
.+.+.....++...+|+..|...++++.. -.+.++. ...-+...|..+...++|.+|-.+|.+++.
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45667778889999999999999998732 2233322 111267788899999999999999999954
No 306
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.16 E-value=1.9e+02 Score=23.03 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH-----hcCCCchhHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 027087 113 NKALQYFTLVVE-----NYKDFAFSEYARVGRALALYE-VGDREEAIAEMEDV 159 (228)
Q Consensus 113 ~~Ai~~~~~Al~-----l~P~~~~~~~a~~~la~~~~~-~g~~~~A~~~~~~a 159 (228)
+.|...|++|++ +.|.++.--....|.+..|+. +|+.++|....+++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~a 199 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 199 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456667777764 346665311123444444554 57777777766665
No 307
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.61 E-value=52 Score=29.12 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-----------chh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCH---
Q 027087 109 IGDFNKALQYFTLVVENYKDF-----------AFS--EYARVGRALALYEVGDREEAIAEMEDVSISLK-----GYP--- 167 (228)
Q Consensus 109 ~g~~~~Ai~~~~~Al~l~P~~-----------~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~p--- 167 (228)
....+++.....++...--++ ..+ -|...++-.+|++.|+..-+...++.+-.... .+|
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 345677777788887763221 111 13445667899999999999888876622111 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC
Q 027087 168 --EVHAALAAALYVDKHALLLAENQFTIATLL-DPHY 201 (228)
Q Consensus 168 --~~~~~la~~l~~~~~~~~~A~~~~~~al~l-~P~~ 201 (228)
.-++++|..+.. .++|.+|.+++..|++. -|..
T Consensus 219 ~v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCcc
Confidence 346778887766 67999999999999998 7765
No 308
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=29.25 E-value=2e+02 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 027087 113 NKALQYFTLVVEN----YKDFAFSEYARVGRALALYE-VGDREEAIAEMEDV 159 (228)
Q Consensus 113 ~~Ai~~~~~Al~l----~P~~~~~~~a~~~la~~~~~-~g~~~~A~~~~~~a 159 (228)
+.|...|++|.++ .|.++.--....|....|+. +|+.++|....+++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~A 224 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEA 224 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677778877764 44444211123444445555 67777777766666
No 309
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=35.39 E-value=12 Score=35.06 Aligned_cols=50 Identities=26% Similarity=0.165 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHH
Q 027087 99 LLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREE 151 (228)
Q Consensus 99 ~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~ 151 (228)
....+...+..|+|.-|.+..+.++..+|++.. |+..++.+|.++|--.+
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~---ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKD---ARALQADAMEQLGYQTE 513 (668)
Confidence 345567778899999999999999999999999 99999999988876543
No 310
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=28.68 E-value=1.7e+02 Score=23.80 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHh----cCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 150 EEAIAEMEDVSIS----LKGYP---EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 150 ~~A~~~~~~al~~----~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
+.|...|++|+.. .|.+| ....+.+..+|...++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677788888653 34566 45566778888888888999887777665
No 311
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.54 E-value=1e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
...+|..+...|+++.|+.+|-+|+...+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 45678888889999999998888855444
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.27 E-value=98 Score=23.00 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027087 115 ALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDV 159 (228)
Q Consensus 115 Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 159 (228)
+.+.|.-.....=....+. -|...|..+...|++++|.+.|+..
T Consensus 84 p~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSP-LYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544333322211 2455555666666666666666666
No 313
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.04 E-value=1.5e+02 Score=25.62 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 113 NKALQYFTLVVENYKDFA-----FSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 113 ~~Ai~~~~~Al~l~P~~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
+.-++.++.|+.+-|... ...-|+..++.+|..+|++++|++..++++
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445555566655544321 111245566666666677777766666664
No 314
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Probab=27.32 E-value=14 Score=33.52 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.5
Q ss_pred CCCCccCcccccCCCC
Q 027087 1 MAAYQAPVCHLLLSGS 16 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (228)
|-||.+|--||.||..
T Consensus 472 fLCYVTPaEHLgLP~~ 487 (612)
T 3epo_A 472 MLCYVTPKEHLGLPDR 487 (612)
T ss_dssp EEECCCTTTTTSCCCH
T ss_pred heeeccHHHHcCCCCH
Confidence 5699999999988753
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.91 E-value=1.5e+02 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDK 181 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~p~~~~~la~~l~~~~ 181 (228)
.....|...+..|+|.-|.+..+.++...|.|.+++..++.++.+++
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999988888877765
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.28 E-value=1.1e+02 Score=22.74 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=32.8
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
.+--..+.-|-..+..+...|++++|.+.|+..++.+-.-.
T Consensus 95 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 95 GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33445566777889999999999999999999999765543
No 317
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.80 E-value=3.2e+02 Score=24.12 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 027087 95 DALELLEKGRELQAIG--DFNKALQYFTLVVENYK----DFAFSEYARVGRALALYEVGDREEAIAEMEDVSISLK 164 (228)
Q Consensus 95 ~a~a~~~lG~~~~~~g--~~~~Ai~~~~~Al~l~P----~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~ 164 (228)
.+.++-++|.+-...- .-..++..|++|+...- +..- |.|.-+|-.+++.++|.+|+..+-++-..+.
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv--YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc--cceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 4566667776654321 22246777888776532 2222 5677788999999999999999988855444
No 318
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=25.36 E-value=46 Score=22.55 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHH
Q 027087 110 GDFNKALQYFTL 121 (228)
Q Consensus 110 g~~~~Ai~~~~~ 121 (228)
|+-++|+..|++
T Consensus 33 G~k~~A~~~Ykk 44 (89)
T 3eab_A 33 GQKEQAVEWYKK 44 (89)
T ss_dssp SSGGGSHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333333333333
No 319
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.30 E-value=2e+02 Score=24.98 Aligned_cols=48 Identities=13% Similarity=-0.058 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 113 NKALQYFTLVVENYKDFA-----FSEYARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 113 ~~Ai~~~~~Al~l~P~~~-----~~~~a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
+.-++.++.|+.+-|... ...-|+..+|.+|..+|++++|+...++++
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi 223 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAI 223 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555544321 111245556666666666666666666663
No 320
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=24.13 E-value=1.2e+02 Score=24.76 Aligned_cols=48 Identities=15% Similarity=-0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHH-----h--cCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 027087 150 EEAIAEMEDVSI-----S--LKGYP---EVHAALAAALYVDKHALLLAENQFTIATLL 197 (228)
Q Consensus 150 ~~A~~~~~~al~-----~--~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~l 197 (228)
+.|...|++|.. . .|.+| ....+.+..+|...++.++|....++++.-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467777777743 1 35677 455666788888788899998888888764
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.07 E-value=2.3e+02 Score=21.19 Aligned_cols=62 Identities=16% Similarity=-0.016 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--H----HHHHH-HHHHHHHh-cCCHHHHHHHHHHHHhc
Q 027087 136 RVGRALALYEVGDREEAIAEMEDVSISLKGY--P----EVHAA-LAAALYVD-KHALLLAENQFTIATLL 197 (228)
Q Consensus 136 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--p----~~~~~-la~~l~~~-~~~~~~A~~~~~~al~l 197 (228)
-+..|..++..|+|=+|-+.++.+=...+.. . ..... ++.+++.. .|+..-|...+++++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566788889999999999999993333222 1 22233 33333332 47889999999999874
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.96 E-value=1.9e+02 Score=22.89 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=0.0
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFAFSEYARVGRALALYEVGDREEAIAEMEDVSIS 162 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 162 (228)
..|+.....|...+... +++.+.|.-.....=....+.+ |...|..+...|++.+|.+.|+..+..
T Consensus 114 knD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~Alf-Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIF-YEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.75 E-value=1.3e+02 Score=26.15 Aligned_cols=73 Identities=15% Similarity=-0.013 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHHH
Q 027087 109 IGDFNKALQYFTLVVENYKDFAFSE-YARVGRALALYEVGDREEAIAEMEDVSISLKG-YPEVHAALAAALYVDKHALLL 186 (228)
Q Consensus 109 ~g~~~~Ai~~~~~Al~l~P~~~~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~p~~~~~la~~l~~~~~~~~~ 186 (228)
+.+|.-|+-.+...-+++|...... -.+ |.+|+..-+.- ..+ +.-.+..+|..+|+ .+++.+
T Consensus 251 L~rYPmALgnLgDLEe~~pt~gr~~~l~L------------~~~AI~sa~~y---Y~n~HvYPYtylgGy~yR-~~~~re 314 (472)
T 3re2_A 251 IKTYPMAIANLGDLEEISPTPGRPPAEEL------------FKEAITVAKRE---YSDHHIYPYTYLGGYYYR-KKKYYE 314 (472)
T ss_dssp TTTCHHHHHHHHHHHHHSCCTTSCCHHHH------------HHHHHHHHHHH---STTCCSHHHHHHHHHHHH-TTCHHH
T ss_pred hhhCchhhcchhhHHhcCCCCCCCCHHHH------------HHHHHHHHHHH---hccCCccchhhhhhhhhh-cchHHH
Confidence 4567777777777777777643210 011 23344433333 222 23567788887877 679999
Q ss_pred HHHHHHHHHhc
Q 027087 187 AENQFTIATLL 197 (228)
Q Consensus 187 A~~~~~~al~l 197 (228)
|.+.|..+-..
T Consensus 315 Al~~WA~Aa~V 325 (472)
T 3re2_A 315 AIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 324
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.75 E-value=1.8e+02 Score=23.11 Aligned_cols=47 Identities=13% Similarity=-0.056 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 027087 150 EEAIAEMEDVSI-----SLKGYP---EVHAALAAALYVDKHALLLAENQFTIATL 196 (228)
Q Consensus 150 ~~A~~~~~~al~-----~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al~ 196 (228)
++|...|++|+. ..|.+| ....+.+..+|...++.++|...-++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356667777653 245677 45566778888888888998877776664
No 325
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.68 E-value=2e+02 Score=22.95 Aligned_cols=46 Identities=9% Similarity=-0.053 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 150 EEAIAEMEDVSI-----SLKGYP---EVHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 150 ~~A~~~~~~al~-----~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
+.|...|++|.. ..|.+| ....+.+..+|...++.++|....++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355555555532 123455 3444556666666666666665554443
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.25 E-value=1.4e+02 Score=22.40 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=33.2
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
.+--..+.-|...+..+...|++.+|.+.|+..++..-.-.
T Consensus 90 ~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 90 GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34445567778889999999999999999999999775533
No 327
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.45 E-value=2.1e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=-0.050 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 151 EAIAEMEDVSI-----SLKGYP---EVHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 151 ~A~~~~~~al~-----~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
.|...|++++. ..|.+| ....+.+.++|...++.++|...-++++
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555555532 134455 3344555666666666666655544444
No 328
>2ak0_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR {Synthetic}
Probab=21.25 E-value=16 Score=18.20 Aligned_cols=10 Identities=50% Similarity=0.986 Sum_probs=6.6
Q ss_pred CCccCccccc
Q 027087 3 AYQAPVCHLL 12 (228)
Q Consensus 3 ~~~~~~~~~~ 12 (228)
|-.-||||+-
T Consensus 2 ccsnpvchle 11 (26)
T 2ak0_A 2 CCSNPVCHLE 11 (26)
T ss_dssp CTTSHHHHHH
T ss_pred CcCCcceeee
Confidence 4455888873
No 329
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.84 E-value=1.9e+02 Score=19.80 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 96 ALELLEKGRELQAIGDFNKALQYFTLVV 123 (228)
Q Consensus 96 a~a~~~lG~~~~~~g~~~~Ai~~~~~Al 123 (228)
+.-.+..+...+..++|..|....+++.
T Consensus 34 A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 34 AQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4456777888899999999999999874
No 330
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.57 E-value=1.5e+02 Score=23.09 Aligned_cols=41 Identities=20% Similarity=-0.035 Sum_probs=33.5
Q ss_pred hcChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCc
Q 027087 90 SSRVSDALELLEKGRELQAIGDFNKALQYFTLVVENYKDFA 130 (228)
Q Consensus 90 ~~~p~~a~a~~~lG~~~~~~g~~~~Ai~~~~~Al~l~P~~~ 130 (228)
.+--..+.-|-..+..+...|++++|...|+..++..-.-.
T Consensus 109 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 109 GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44455677778889999999999999999999999775533
No 331
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.34 E-value=2.4e+02 Score=22.74 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027087 150 EEAIAEMEDVSI-----SLKGYP---EVHAALAAALYVDKHALLLAENQFTIAT 195 (228)
Q Consensus 150 ~~A~~~~~~al~-----~~~~~p---~~~~~la~~l~~~~~~~~~A~~~~~~al 195 (228)
+.|...|++|.. ..|.+| ....+.+.++|...++.++|....++++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666533 234566 4455566777777777777766555554
No 332
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.23 E-value=1.9e+02 Score=25.07 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027087 135 ARVGRALALYEVGDREEAIAEMEDVS 160 (228)
Q Consensus 135 a~~~la~~~~~~g~~~~A~~~~~~al 160 (228)
|+..+|.+|...|++++|++..++++
T Consensus 204 a~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 204 AQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555566666666666666666664
Done!