BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027089
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 193 bits (490), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
G + I + ++ + + I+ +G LA + + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 181 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 240
Query: 57 MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M L+ + + VK ++ Y+ + +FPSGNYP G D LVHWCHGAPGV L +
Sbjct: 241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 300
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+++L A +V+W+ GLLK+ G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 301 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA 360
Query: 173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA C Y E D P+SLFEG+ G + D++ P++ARFPA+EL
Sbjct: 361 CKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 411
>pdb|1Z8P|A Chain A, Ferrous Dioxygen Complex Of The A245s Cytochrome P450eryf
Length = 404
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1JIP|A Chain A, P450eryf(A245s)KETOCONAZOLE
Length = 403
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|1Z8Q|A Chain A, Ferrous Dioxygen Complex Of The A245t Cytochrome P450eryf
Length = 404
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1JIO|A Chain A, P450eryf/6deb
Length = 403
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|1Z8O|A Chain A, Ferrous Dioxygen Complex Of The Wild-Type Cytochrome
P450eryf
Length = 404
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1EGY|A Chain A, Cytochrome P450eryf With 9-Aminophenanthrene Bound
pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P450eryf With
Androstendione Bound
pdb|1JIN|A Chain A, P450eryfKETOCONAZOLE
pdb|1OXA|A Chain A, Cytochrome P450 (Donor:o2 Oxidoreductase)
Length = 403
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 44 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMI----------KNRFPSGNYPSSEGSE 93
G AHGLAG+ +L +K E L+ +I K +F + ++ +
Sbjct: 203 GLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELK 262
Query: 94 SDRLVH--------WCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVG- 144
++++ WC+G PG++L F VD E + + + +++G
Sbjct: 263 KEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYF----VDKAEKILESAMQRKLGI 318
Query: 145 ----ICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYD---RAQKLIAEGKMHGGDR 197
ICHG SG L + + L K F ++ + +++++ E +G +
Sbjct: 319 DSYMICHGYSG-------LIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE---YGDES 368
Query: 198 PYSLFEGIGG 207
EGI G
Sbjct: 369 GTGFLEGISG 378
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-D 68
Q V EI +A RR W G G HG+AG+ V ++L P+EV+
Sbjct: 169 QTANPVFEITQAVRR------------WTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQ 216
Query: 69 VKGTLRYMIKNRFP---SGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF 118
V G + NRF YP + +L W P T A + +
Sbjct: 217 VAGVNHGIWLNRFRYRGEDAYPLLDEWIEKKLPEWEPKNPWDTQXSPAAXDXY 269
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 130 AGEVVWKRGLLKRVGICHGISGNTYV 155
+GEV W LLKRVG+ GI T++
Sbjct: 47 SGEVEWLDSLLKRVGLIRGIDEGTFL 72
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 130 AGEVVWKRGLLKRVGICHGISGNTYV 155
+GEV W LLKRVG+ GI T++
Sbjct: 47 SGEVEWLDSLLKRVGLIRGIDEGTFL 72
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-D 68
Q V EI +A RR W G G HG+AG+ V + L P+EV+
Sbjct: 157 QTANPVFEITQAVRR------------WTGANIIGFCHGVAGVYEVFERLGLDPEEVDWQ 204
Query: 69 VKGTLRYMIKNRF 81
V G + NRF
Sbjct: 205 VAGVNHGIWLNRF 217
>pdb|3RZM|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
Length = 206
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 43 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 102
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 103 LINRYKDGSDHICEHRDDEREL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 153
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 154 SRRVAVVRLPLAHG 167
>pdb|3BTY|A Chain A, Crystal Structure Of Human Abh2 Bound To Dsdna Containing
1mea Through Cross-Linking Away From Active Site
pdb|3BUC|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna With Mn(Ii)
And 2kg
Length = 203
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 42 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 101
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 102 LINRYKDGSDHICEHRDDEREL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 152
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 153 SRRVAVVRLPLAHG 166
>pdb|3RZH|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
pdb|3RZJ|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
pdb|3RZK|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
Length = 209
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 45 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 104
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 105 LINRYKDGSDHICEHRDDEREL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 155
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 156 SRRVAVVRLPLAHG 169
>pdb|3S57|A Chain A, Abh2 Cross-Linked With Undamaged Dsdna-1 Containing
Cofactors
pdb|3S5A|A Chain A, Abh2 Cross-Linked To Undamaged Dsdna-2 With Cofactors
Length = 204
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 43 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 102
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 103 LINRYKDGSDHICEHRDDEREL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 153
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 154 SRRVAVVRLPLAHG 167
>pdb|3RZG|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
Length = 209
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 45 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 104
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 105 LINRYKDGSDHICEHRDDERDL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 155
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 156 SRRVAVVRLPLAHG 169
>pdb|3RZL|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
pdb|3RZL|D Chain D, Duplex Interrogation By A Direct Dna Repair Protein In The
Search Of Damage
Length = 208
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 44 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 103
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFG-EKEFLQAAVDA-GEVV 134
+ NR+ G+ E + +R + APG + A+ FG ++F+ D+ G+
Sbjct: 104 LINRYKDGSDHICEHRDDEREL-----APGSPI----ASVSFGASRDFVFRHKDSRGKSP 154
Query: 135 WKRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 155 SRRVAVVRLPLAHG 168
>pdb|1FL9|A Chain A, The Yjee Protein
pdb|1FL9|B Chain B, The Yjee Protein
pdb|1FL9|C Chain C, The Yjee Protein
Length = 161
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 123 FLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEY---LYR 171
+L + AG+ RG+L+ +G + TY + Y + G + Y LYR
Sbjct: 40 YLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYR 91
>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through
Active Site Cross-Linking
Length = 204
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 43 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 102
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVW 135
+ NR+ G+ G D G+P +++ + + VF K+ G+
Sbjct: 103 LINRYKDGS--DHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKD------SRGKSPS 154
Query: 136 KRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 155 RRVAVVRLPLAHG 167
>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With
Cofactors
Length = 203
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 42 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 101
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVW 135
+ NR+ G+ G D G+P +++ + + VF K+ G+
Sbjct: 102 LINRYKDGS--DHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKD------SRGKSPS 153
Query: 136 KRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 154 RRVAVVRLPLAHG 166
>pdb|1HTW|A Chain A, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|B Chain B, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|C Chain C, Complex Of Hi0065 With Adp And Magnesium
Length = 158
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 123 FLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEY---LYR 171
+L + AG+ RG+L+ +G + TY + Y + G + Y LYR
Sbjct: 37 YLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYR 88
>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna
Length = 202
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 41 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 100
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVW 135
+ NR+ G+ G D G+P +++ + + VF K+ G+
Sbjct: 101 LINRYKDGS--DHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKD------SRGKSPS 152
Query: 136 KRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 153 RRVAVVRLPLAHG 165
>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea
And N3-mec In Duplex Dna Using A Cross-linked Host-guest
System
pdb|3H8R|A Chain A, Structure Determination Of Dna Methylation Lesions N1-Mea
And N3-Mec In Duplex Dna Using A Cross-Linked Host-Guest
System
pdb|3H8X|A Chain A, Structure Determination Of Dna Methylation Lesions N1-Mea
And N3-Mec In Duplex Dna Using A Cross-Linked Host-Guest
System
Length = 209
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 29 GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP-----------DEVEDVKG-TLRYM 76
R + +WH A +G AG+ + + L P D V V G T ++
Sbjct: 45 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFV 104
Query: 77 IKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVW 135
+ NR+ G+ G D G+P +++ + + VF K+ G+
Sbjct: 105 LINRYKDGS--DHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKD------SRGKSPS 156
Query: 136 KRGLLKRVGICHG 148
+R + R+ + HG
Sbjct: 157 RRVAVVRLPLAHG 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,108,967
Number of Sequences: 62578
Number of extensions: 301246
Number of successful extensions: 554
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 29
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)