BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027089
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1
Length = 450
Score = 223 bits (568), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 19/239 (7%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
+G T+ ++ VV II++G+ L+ R CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct: 214 IGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYML 273
Query: 57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M E K D+ E VK ++ Y+ +F SGNYPSS +E+DRLVHWCHGAPGV L +
Sbjct: 274 MQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQ 333
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+++L+ A++ +V+W+RGLL++ GICHG SGN Y FLSLYRLT + +YLYRA
Sbjct: 334 AYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRA 393
Query: 173 KAFACFLYDRAQKLIAEGKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA + D HG DRPYSLFEG+ G H D++ P ARFPA+EL
Sbjct: 394 CKFAEWCLDYG--------AHGCRIPDRPYSLFEGMAGAVHFLSDILVPETARFPAFEL 444
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1
Length = 450
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 19/239 (7%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVL 56
+G T+ + ++ VV+ II++G+ L+ R CPL+Y+WH K+Y GAAHG+AGI ++L
Sbjct: 214 IGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYML 273
Query: 57 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M K D+ E VK ++ Y+ +F SGNYPSS +E+DRLVHWCHGAPGV L +
Sbjct: 274 MQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQ 333
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+++L+ A++ +V+W+RGLL++ GICHG +GN Y FLSLYRLT + +YLYRA
Sbjct: 334 AYKVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 393
Query: 173 KAFACFLYDRAQKLIAEGKMHGG---DRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA + D HG DRPYSLFEG+ G H D++ P +RFPA+EL
Sbjct: 394 CKFAEWCLDYG--------AHGCRIPDRPYSLFEGMAGAIHFLSDVLGPETSRFPAFEL 444
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1
Length = 399
Score = 193 bits (491), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
G + I + ++ + + I+ +G LA + + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 228
Query: 57 MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M L+ + + VK ++ Y+ + +FPSGNYP G D LVHWCHGAPGV L +
Sbjct: 229 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 288
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+++L A +V+W+ GLLK+ G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 289 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRA 348
Query: 173 KAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA C Y E D P+SLFEG+ G + D++ P++ARFPA+EL
Sbjct: 349 CKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1
Length = 399
Score = 191 bits (484), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 145/236 (61%), Gaps = 13/236 (5%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
G++ I + ++ + + I+ +G L+ + + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYL 228
Query: 57 MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M L+ ++ + VK ++ ++ + +FPSGNYP D LVHWCHGAPGV L +
Sbjct: 229 MQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQ 288
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+ +L A +V+W+ GLLK+ G+CHG +GN Y FL+LY LT +++YLYRA
Sbjct: 289 AYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRA 348
Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA + D E D P+SLFEG+ G + D++ P++A+FPA+EL
Sbjct: 349 CKFAEWCLD-----YGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1
Length = 405
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 149/239 (62%), Gaps = 23/239 (9%)
Query: 3 KDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
++ I ++ + D I+++G+ L+ R + PLMYEW+ ++Y GAAHGL+GI + LM
Sbjct: 177 QEKIPFQYIQQICDAILESGQILSQRNKIQDQSPLMYEWYQEEYVGAAHGLSGIYYYLMQ 236
Query: 59 MELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAA 115
L + VK ++ Y+ + +FPSGNY G D LVHWCHG+PGV L +A
Sbjct: 237 PGLVAGQDRVFSLVKPSVNYVCQLKFPSGNYAPCVGDARDLLVHWCHGSPGVIYMLIQAF 296
Query: 116 EVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRAKA 174
+VFG +++L+ A+ GEV+W+RGLLK+ G+CHG +GN Y FL+LY++T + ++LYRA
Sbjct: 297 KVFGVRQYLEDALQCGEVIWQRGLLKKGYGLCHGAAGNAYGFLALYKITQDPKHLYRACM 356
Query: 175 FA--CFLYDRAQKLIAEGKMHGG---DRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA C Y R HG D P+SLFEG+ G + D+++P+ A+FP +E+
Sbjct: 357 FADWCMNYGR----------HGCRTPDTPFSLFEGMAGTIYFLADLLQPARAKFPCFEV 405
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2
Length = 399
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 13/236 (5%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 56
G++ I + ++ + + I+ +G +L+ + + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 169 FGEEKIPQSHIQQICETILTSGEKLSRKRNFTTKSPLMYEWYQEYYVGAAHGLAGIYYYL 228
Query: 57 MDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113
M L + + VK ++ ++ + +FPSGNYPS D LVHWCHGAPGV L +
Sbjct: 229 MQPSLHVSQGKLHSLVKPSVDFVCQLKFPSGNYPSCLDDTRDLLVHWCHGAPGVIYMLIQ 288
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A +VF E+ +L A +V+W+ GLLK+ G+CHG +GN Y FL+LY LT + +YLYRA
Sbjct: 289 AYKVFKEEHYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDAKYLYRA 348
Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
FA + D E D P+SLFEG+ G + D++ P++A+FPA+EL
Sbjct: 349 CKFAEWCLD-----YGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061
PE=1 SV=1
Length = 419
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 19/239 (7%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
+ + I+ + ++ I+ +GR + N CPLMY++HG +Y GAAHGL I+H+L+D
Sbjct: 179 LPEKKITDDDLVSICQLIVTSGREYSKQNNSPCPLMYQYHGTEYLGAAHGLCAILHMLLD 238
Query: 59 --------MELKPDEVEDVKGTLRYMIKNRFPSGNYPSS----EGSESDRLVHWCHGAPG 106
+ E+ D+K ++ + ++ + GN+P + RLVHWCHGAPG
Sbjct: 239 SPWFRTLPISAPAAELRDIKRSIDFFLELQDSDGNFPVALEDLRSGRDKRLVHWCHGAPG 298
Query: 107 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGN 165
LAKA +F E+++L + ++VWK+G L++ GICHG++GN YVFL L+RLT
Sbjct: 299 AVYVLAKAYLIFKEEKYLASLRRCADMVWKKGFLRKGPGICHGVAGNGYVFLLLFRLTNE 358
Query: 166 VEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224
+ YLYRA F L + KL A DRP+SL+EG+ G +D++EP +A FP
Sbjct: 359 MRYLYRAHKFMELLTNAEFKLRARTP----DRPHSLYEGVAGTVCYLVDLLEPEQAYFP 413
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2
Length = 420
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 146/240 (60%), Gaps = 21/240 (8%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
+ ++ ++ AQ++++ I+ +G++ A + R PLMY ++G +Y GAAHGL+ I+ +L+
Sbjct: 188 LAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLS 247
Query: 59 ME--LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR---LVHWCHGAPGVTLTLAK 113
LKP + E V ++ ++++ + N+P G +R LVHWCHGAPG+ AK
Sbjct: 248 YHEHLKPSDRELVWQSVDFLMEQE-QNCNWPPELGETIERENELVHWCHGAPGIAYLFAK 306
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A V + ++L + GE+ W++GLLK+ GICHG++G+ YVFL LYRLTGN +Y+YRA
Sbjct: 307 AYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRP----YSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
+ FA FL+ + G R YSL+EG G +D+++P++A FP + +
Sbjct: 367 QRFAQFLFTE--------EFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 418
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2
Length = 420
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 146/240 (60%), Gaps = 21/240 (8%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
+ ++ ++ Q++A+ I+ +G++ A + R PLMY ++G +Y GAAHGL+ I+ +L+
Sbjct: 188 LAQEVLTPTQIKAICQAILDSGKQYALKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLS 247
Query: 59 ME--LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR---LVHWCHGAPGVTLTLAK 113
+ LKP + E V ++ ++++ + N+P G +R LVHWCHGAPG+ AK
Sbjct: 248 YQEHLKPSDRELVWQSVDFLMEQE-QNCNWPPELGETIERENELVHWCHGAPGIAYLFAK 306
Query: 114 AAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRA 172
A + + ++L + GE+ W++GLLK+ GICHG++G+ YVFL LYRLTGN +Y+YRA
Sbjct: 307 AYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
Query: 173 KAFACFLYDRAQKLIAEGKMHGGDRP----YSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228
+ FA FL+ + G R YSL+EG G +D+++P++A FP + +
Sbjct: 367 QRFAQFLFTE--------EFKSGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 418
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA15215 PE=3 SV=1
Length = 420
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 19/234 (8%)
Query: 6 ISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD----- 58
I+ + ++ I+ +GR + N PLM+++HG +Y GAAHGL I+H+L+D
Sbjct: 185 ITDDDLISICQLIVTSGREYSKMNNSPLPLMFQYHGTEYLGAAHGLCAILHMLLDSPWFR 244
Query: 59 ---MELKPDEVEDVKGTLRYMIKNRFPSGNYPSS----EGSESDRLVHWCHGAPGVTLTL 111
+ E+ ++K ++ Y + + GN+P + RLVHWCHGAPG L
Sbjct: 245 TVPISAPAAELREIKRSIDYFLVLQDAEGNFPVALEDLRSGRDKRLVHWCHGAPGAVYML 304
Query: 112 AKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLY 170
AKA +F E+++L + + ++VWK+G L++ GICHG++GN YVFL L+RLT ++YLY
Sbjct: 305 AKAYLIFKEEKYLTSLRRSADLVWKKGFLRKGPGICHGVAGNGYVFLLLFRLTNEMKYLY 364
Query: 171 RAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224
RA F L + K + D P+SL+EG+ G +D++EP +A FP
Sbjct: 365 RAHKFMELLTNSEFK----QRARIPDNPHSLYEGVAGTVCFLVDILEPEQAYFP 414
>sp|P33115|SPAC_BACIU Subtilin biosynthesis protein SpaC OS=Bacillus subtilis GN=spaC
PE=4 SV=1
Length = 441
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 38 HGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRL 97
G K G + + + L++ K + KG + + + G+ P++ D
Sbjct: 246 QGIKVKGQEAAIEKMANFLLEFSEKEQDSLFWKGIISF---EEYQYGSPPNAVNFSRDA- 301
Query: 98 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWK--RGLLKRVGICHGISGNTYV 155
WC+G PGV L L KA + E + V RG+ ICHG SG +
Sbjct: 302 --WCYGRPGVCLALVKAGKALQNTELINIGVQNLRYTISDIRGIFSPT-ICHGYSGIGQI 358
Query: 156 FLSLYRLTGN 165
L++ LTG
Sbjct: 359 LLAVNLLTGQ 368
>sp|P37609|LCN2_LACLL Lacticin 481/lactococcin biosynthesis protein lcnDR2 OS=Lactococcus
lactis subsp. lactis GN=lcnDR2 PE=4 SV=1
Length = 922
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 86 YPSSEGSESDRLVHWCHGAPGVT------LTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL 139
+ S +S WCHGA G +T+ K A E ++ + GE++ +
Sbjct: 766 WTDSRKVDSSYSSQWCHGASGQAIARMEWITVNKTARFLSNSELIKVKKELGELI---DI 822
Query: 140 LKRVG-------ICHGISGNTYVF 156
LK+ G +CHGI GN +
Sbjct: 823 LKKEGMYTDNFCLCHGILGNLLIL 846
>sp|Q00441|CPXJ_SACEN 6-deoxyerythronolide B hydroxylase OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=eryF PE=1 SV=2
Length = 404
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 98 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 147
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>sp|Q03202|NISC_LACLL Nisin biosynthesis protein NisC OS=Lactococcus lactis subsp. lactis
GN=nisC PE=1 SV=1
Length = 418
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 44 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMI----------KNRFPSGNYPSSEGSE 93
G AHGLAG+ +L +K E L+ +I K +F + ++ +
Sbjct: 209 GLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELK 268
Query: 94 SDRLVH--------WCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVG- 144
++++ WC+G PG++L F VD E + + + +++G
Sbjct: 269 KEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYF----VDKAEKILESAMQRKLGI 324
Query: 145 ----ICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYD---RAQKLIAEGKMHGGDR 197
ICHG SG L + + L K F ++ + +++++ E +G +
Sbjct: 325 DSYMICHGYSG-------LIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE---YGDES 374
Query: 198 PYSLFEGIGG 207
EGI G
Sbjct: 375 GTGFLEGISG 384
>sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein RapA OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rapA PE=3
SV=1
Length = 968
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 39 GKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLV 98
G+ + A+H VL D+ L PD +E G L + + + P EG+ +RL+
Sbjct: 570 GRNFQFASH------LVLFDLPLNPDLLEQRIGRLDRIGQKNDIQIHLPYLEGTAQERLM 623
Query: 99 HWC-HGAPGVTLTLAKAAEVFGE 120
W HG LT +F E
Sbjct: 624 QWYHHGLNAFELTCPSGHVLFNE 646
>sp|Q6ZPJ3|UBE2O_MOUSE Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1
SV=3
Length = 1288
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 59 MELKPD-EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV 117
ME PD E ++ K ++ +K +PS E+ L C G PGVT T AK EV
Sbjct: 876 MEAVPDTERKEEKPEVQSPVKAEWPS---------ETPVLCQQCGGRPGVTFTSAK-GEV 925
Query: 118 FGEKEF 123
F EF
Sbjct: 926 FSVLEF 931
>sp|P37512|YYAL_BACSU Uncharacterized protein YyaL OS=Bacillus subtilis (strain 168)
GN=yyaL PE=4 SV=1
Length = 689
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 111 LAKAAEVFGEKEFLQAAVDA-----------GEVV--WKRGLLKRVGICHGISGNTYVFL 157
LAKAA+V+ E ++L A DA G V+ ++ G +K G + + +L
Sbjct: 429 LAKAAKVYQEPKYLSLAKDAITFIENKLIIDGRVMVRYRDGEVKNKGFIDDYAFLLWAYL 488
Query: 158 SLYRLTGNVEYLYRAK 173
LY + ++ YL +AK
Sbjct: 489 DLYEASFDLSYLQKAK 504
>sp|A7TL17|YD156_VANPO WD repeat-containing protein Kpol_530p43 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_530p43
PE=3 SV=1
Length = 536
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 1 MGKDTISTAQMRAVVDEIIKAGRRLAN--RGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD 58
+D + A M+ +D G++LA+ P + WH + W A +G + + D
Sbjct: 468 QDQDVFAIANMKRAIDIYDSQGQQLAHLPTATVPAVISWHPLRNWIAGGNSSGKIFLFTD 527
Query: 59 MELKPDEVE 67
+K +E E
Sbjct: 528 ETVKKEEEE 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,038,360
Number of Sequences: 539616
Number of extensions: 3735852
Number of successful extensions: 8600
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8541
Number of HSP's gapped (non-prelim): 25
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)