Query 027089
Match_columns 228
No_of_seqs 124 out of 896
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 1.2E-45 2.5E-50 308.6 19.4 224 1-228 174-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 2E-36 4.3E-41 265.8 22.5 216 5-224 121-343 (343)
3 PF05147 LANC_like: Lanthionin 100.0 2E-34 4.4E-39 252.6 8.3 218 9-227 129-354 (355)
4 cd04793 LanC LanC is the cycla 100.0 2E-30 4.4E-35 230.7 21.2 184 40-223 165-379 (382)
5 cd04434 LanC_like LanC-like pr 100.0 8.3E-30 1.8E-34 221.6 21.4 216 4-225 117-342 (343)
6 cd04791 LanC_SerThrkinase Lant 100.0 4E-30 8.8E-35 223.2 17.8 189 34-225 126-321 (321)
7 cd04792 LanM-like LanM-like pr 100.0 2.9E-28 6.4E-33 235.7 20.4 178 39-219 635-819 (825)
8 COG4403 LcnDR2 Lantibiotic mod 99.9 1.8E-25 4E-30 207.7 13.9 198 13-227 762-963 (963)
9 cd04434 LanC_like LanC-like pr 99.9 1.4E-20 2.9E-25 163.7 14.6 170 40-219 92-282 (343)
10 cd04794 euk_LANCL eukaryotic L 99.8 1.5E-20 3.2E-25 165.2 14.6 168 43-220 97-287 (343)
11 cd04791 LanC_SerThrkinase Lant 99.8 1.7E-19 3.7E-24 156.5 17.1 165 41-218 77-256 (321)
12 cd04793 LanC LanC is the cycla 99.8 3.5E-18 7.6E-23 152.1 19.5 173 41-220 99-310 (382)
13 cd04792 LanM-like LanM-like pr 99.8 1.1E-17 2.4E-22 162.2 16.8 164 41-217 581-761 (825)
14 PF05147 LANC_like: Lanthionin 99.6 2.1E-15 4.6E-20 132.1 10.5 165 43-217 102-288 (355)
15 KOG2787 Lanthionine synthetase 99.5 3.4E-14 7.3E-19 120.1 9.2 166 45-220 156-343 (403)
16 COG4403 LcnDR2 Lantibiotic mod 99.2 2.6E-09 5.6E-14 100.9 17.9 203 2-218 589-808 (963)
17 cd00249 AGE AGE domain; N-acyl 96.7 0.036 7.7E-07 49.2 12.4 139 46-184 52-210 (384)
18 PF07944 DUF1680: Putative gly 96.7 0.039 8.3E-07 51.5 12.9 132 44-178 61-206 (520)
19 TIGR02474 pec_lyase pectate ly 96.2 0.13 2.7E-06 44.3 12.4 133 48-182 45-218 (290)
20 PF09492 Pec_lyase: Pectic aci 95.6 0.051 1.1E-06 46.7 7.4 131 48-180 40-211 (289)
21 COG1331 Highly conserved prote 95.6 1.7 3.7E-05 41.5 17.8 128 52-183 416-571 (667)
22 cd00249 AGE AGE domain; N-acyl 95.5 1.4 3.1E-05 38.8 16.5 169 9-183 76-275 (384)
23 PF07944 DUF1680: Putative gly 95.4 0.15 3.3E-06 47.5 10.2 123 52-182 130-269 (520)
24 COG3533 Uncharacterized protei 94.6 0.66 1.4E-05 42.7 11.7 170 4-176 28-207 (589)
25 COG1331 Highly conserved prote 94.0 0.82 1.8E-05 43.6 11.3 76 107-184 416-505 (667)
26 PLN02993 lupeol synthase 92.9 0.77 1.7E-05 44.7 9.6 118 10-138 591-714 (763)
27 PF03663 Glyco_hydro_76: Glyco 92.2 0.85 1.9E-05 40.7 8.4 131 50-183 91-257 (370)
28 PF03663 Glyco_hydro_76: Glyco 91.4 1.8 3.9E-05 38.6 9.6 72 107-181 93-189 (370)
29 PF07221 GlcNAc_2-epim: N-acyl 91.3 0.35 7.6E-06 42.4 4.9 131 52-183 26-175 (346)
30 PF07470 Glyco_hydro_88: Glyco 90.7 7.5 0.00016 33.9 12.7 146 63-215 86-262 (336)
31 PLN03012 Camelliol C synthase 89.8 2.8 6.1E-05 40.9 9.8 117 10-137 591-713 (759)
32 TIGR02474 pec_lyase pectate ly 89.6 13 0.00027 32.2 12.7 118 103-220 45-202 (290)
33 PF07470 Glyco_hydro_88: Glyco 89.0 4.6 0.0001 35.2 10.0 72 111-182 76-159 (336)
34 PF09492 Pec_lyase: Pectic aci 88.6 5.7 0.00012 34.3 9.9 117 103-219 40-196 (289)
35 COG4225 Predicted unsaturated 88.6 1.6 3.4E-05 38.4 6.5 73 108-183 42-115 (357)
36 COG4225 Predicted unsaturated 85.6 7.5 0.00016 34.2 9.0 69 108-176 85-164 (357)
37 KOG2430 Glycosyl hydrolase, fa 84.0 8.4 0.00018 34.0 8.6 84 101-184 183-285 (587)
38 PLN02993 lupeol synthase 78.8 23 0.0005 34.8 10.5 132 42-182 559-713 (763)
39 PF13243 Prenyltrans_1: Prenyl 78.5 2.3 5E-05 30.4 2.9 58 69-137 1-58 (109)
40 cd02889 SQCY Squalene cyclase 76.8 49 0.0011 28.6 14.1 110 12-137 2-129 (348)
41 PF13243 Prenyltrans_1: Prenyl 75.4 3.6 7.7E-05 29.3 3.2 67 11-88 1-67 (109)
42 cd02889 SQCY Squalene cyclase 73.3 31 0.00067 29.9 9.2 102 70-183 2-130 (348)
43 PTZ00470 glycoside hydrolase f 73.2 26 0.00057 32.9 9.0 74 109-182 162-257 (522)
44 cd02894 GGTase-II Geranylgeran 69.3 34 0.00075 29.2 8.4 33 69-101 150-182 (287)
45 COG3533 Uncharacterized protei 67.8 1.1E+02 0.0024 28.7 11.4 105 66-182 153-263 (589)
46 TIGR01507 hopene_cyclase squal 67.7 71 0.0015 30.8 10.8 118 8-137 470-589 (635)
47 PF00432 Prenyltrans: Prenyltr 66.1 6.5 0.00014 23.4 2.3 33 69-101 3-35 (44)
48 cd02890 PTase Protein prenyltr 65.6 23 0.0005 30.0 6.5 35 67-101 146-180 (286)
49 PF06662 C5-epim_C: D-glucuron 64.5 10 0.00022 30.7 3.8 35 144-180 29-63 (189)
50 TIGR03463 osq_cycl 2,3-oxidosq 64.2 86 0.0019 30.2 10.7 88 45-137 504-595 (634)
51 TIGR01787 squalene_cyclas squa 62.4 1.1E+02 0.0023 29.5 11.0 91 45-137 487-579 (621)
52 KOG2429 Glycosyl hydrolase, fa 58.0 27 0.00058 32.9 5.7 81 105-185 196-296 (622)
53 PRK11097 endo-1,4-D-glucanase; 57.9 88 0.0019 28.1 8.9 132 51-183 56-215 (376)
54 PF06917 Pectate_lyase_2: Peri 57.3 61 0.0013 30.2 7.8 79 107-185 389-475 (557)
55 PLN03012 Camelliol C synthase 56.3 1.3E+02 0.0028 29.7 10.4 116 66-184 512-653 (759)
56 PF01532 Glyco_hydro_47: Glyco 55.0 19 0.0004 33.1 4.3 35 151-185 359-393 (452)
57 PTZ00470 glycoside hydrolase f 54.0 24 0.00052 33.2 4.9 37 149-185 423-459 (522)
58 TIGR03463 osq_cycl 2,3-oxidosq 51.5 2.3E+02 0.0051 27.3 12.7 122 6-137 397-537 (634)
59 COG5029 CAL1 Prenyltransferase 51.3 1.7E+02 0.0037 25.7 9.4 135 71-218 130-273 (342)
60 cd02892 SQCY_1 Squalene cyclas 50.5 1E+02 0.0022 29.6 8.8 80 49-137 453-537 (634)
61 PF07221 GlcNAc_2-epim: N-acyl 49.7 1.5E+02 0.0033 25.7 9.2 76 107-183 26-116 (346)
62 cd02892 SQCY_1 Squalene cyclas 46.9 2.7E+02 0.0059 26.7 11.9 83 53-137 315-412 (634)
63 KOG2244 Highly conserved prote 46.0 2.8E+02 0.006 26.6 11.0 133 50-182 512-678 (786)
64 PF01532 Glyco_hydro_47: Glyco 45.6 54 0.0012 30.1 5.8 75 107-181 82-178 (452)
65 PF06662 C5-epim_C: D-glucuron 44.8 1.7E+02 0.0036 23.7 11.0 128 43-175 28-187 (189)
66 COG3531 Predicted protein-disu 44.4 13 0.00028 30.3 1.4 20 95-114 9-28 (212)
67 TIGR01507 hopene_cyclase squal 42.1 3.3E+02 0.0071 26.3 11.8 40 49-88 383-424 (635)
68 PF02061 Lambda_CIII: Lambda P 38.2 53 0.0011 19.6 2.9 26 1-26 11-36 (45)
69 cd02897 A2M_2 Proteins similar 36.1 2.7E+02 0.0058 23.5 12.8 83 6-88 39-123 (292)
70 PRK11097 endo-1,4-D-glucanase; 31.9 3.9E+02 0.0083 24.1 9.1 37 147-183 116-152 (376)
71 PF13249 Prenyltrans_2: Prenyl 31.8 58 0.0013 22.8 3.1 21 66-86 91-111 (113)
72 PLN03201 RAB geranylgeranyl tr 31.6 1.7E+02 0.0036 25.5 6.4 34 68-101 153-186 (316)
73 COG1657 SqhC Squalene cyclase 30.7 69 0.0015 30.0 4.0 70 11-89 354-423 (517)
74 cd02890 PTase Protein prenyltr 30.5 3.3E+02 0.0071 22.9 10.6 87 5-101 43-132 (286)
75 KOG2204 Mannosyl-oligosacchari 30.5 2.3E+02 0.005 26.9 7.2 67 113-179 273-362 (625)
76 PLN02710 farnesyltranstransfer 29.8 4.5E+02 0.0097 24.2 12.4 85 6-101 89-177 (439)
77 cd02894 GGTase-II Geranylgeran 29.2 2.4E+02 0.0051 24.0 6.9 33 69-101 198-230 (287)
78 cd02893 FTase Protein farnesyl 28.4 2.1E+02 0.0046 24.6 6.5 34 68-101 147-180 (299)
79 TIGR01787 squalene_cyclas squa 25.3 6.2E+02 0.013 24.4 15.0 75 9-88 319-409 (621)
80 KOG2431 1, 2-alpha-mannosidase 23.8 3.2E+02 0.0069 25.2 6.7 42 143-184 171-212 (546)
81 PF07678 A2M_comp: A-macroglob 23.4 3E+02 0.0066 22.7 6.4 82 52-137 33-125 (246)
82 KOG3760 Heparan sulfate-glucur 21.4 2.3E+02 0.0051 25.8 5.4 95 66-162 379-499 (594)
83 cd02895 GGTase-I Geranylgerany 20.5 2.6E+02 0.0056 24.1 5.5 35 67-101 216-250 (307)
84 PF14069 SpoVIF: Stage VI spor 20.5 1E+02 0.0022 21.2 2.4 20 4-23 46-65 (79)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=1.2e-45 Score=308.65 Aligned_cols=224 Identities=63% Similarity=1.190 Sum_probs=206.4
Q ss_pred CCCCCCChhHHHHHHHHHHHhcHHhhhcCC--CCCceeecCccccccccchHHHHHHHHcccCCCch---HHHHHHHHHH
Q 027089 1 MGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRY 75 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~---~~~~~~~l~~ 75 (228)
.|+.++|.+.|.++|+.|+++++.+++... +|+||+|+++.+.|.|||.+||++.|.......+. .+.++..++|
T Consensus 174 ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldy 253 (403)
T KOG2787|consen 174 IGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDY 253 (403)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHH
Confidence 478999999999999999999999988865 99999999999999999999999999998765443 7889999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCC-CccccChhhHHH
Q 027089 76 MIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTY 154 (228)
Q Consensus 76 l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lCHG~aG~~~ 154 (228)
+.+++|++||+|.+.+++.+..+.||||+||+++.+.+++++++++++++.+.++.+.+|++++.+. +++|||.+|+++
T Consensus 254 m~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaY 333 (403)
T KOG2787|consen 254 MIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAY 333 (403)
T ss_pred HHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchh
Confidence 9999999999999887777888999999999999999999999999999999999999999998855 999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 027089 155 VFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 228 (228)
Q Consensus 155 ~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~~~~ 228 (228)
+|+.+|+.|+|.+|+.+|.++++.++++... . +...++.++|||.|.||.+++|+.+++|++.+||-|||
T Consensus 334 vFLsLyRLT~d~kYlyRA~kFae~lld~~~~---~-g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El 403 (403)
T KOG2787|consen 334 VFLSLYRLTGDMKYLYRAKKFAEWLLDYGFS---H-GCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL 403 (403)
T ss_pred hhHhHHHHcCcHHHHHHHHHHHHHHHhhhhh---c-cCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence 9999999999999999999999999998742 1 22335678999999999999999999999999999986
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=2e-36 Score=265.77 Aligned_cols=216 Identities=51% Similarity=0.983 Sum_probs=180.7
Q ss_pred CCChhHHHHHHHHHHHhcHHhhhc--CCCCCceeecCccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHh
Q 027089 5 TISTAQMRAVVDEIIKAGRRLANR--GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKN 79 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~ 79 (228)
+...+.+.++++.+++..+..... ...+.+|.|.+..++|+|||++||+++|..++.. .+..+.++++++++.+.
T Consensus 121 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~ 200 (343)
T cd04794 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSL 200 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHh
Confidence 345678888888888876544332 1345677788888999999999999999999764 44678899999999876
Q ss_pred cCCCCCCCCCCCCC-CCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCC-CCccccChhhHHHHHH
Q 027089 80 RFPSGNYPSSEGSE-SDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLK-RVGICHGISGNTYVFL 157 (228)
Q Consensus 80 ~~~~g~w~~~~~~~-~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lCHG~aG~~~~ll 157 (228)
..+.|+||+...+. ++...+||||++||+.+++.+++.++++++.+.++.+++.+|+.++.. ++++|||.+|++++|+
T Consensus 201 ~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL 280 (343)
T cd04794 201 QFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFL 280 (343)
T ss_pred hccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHH
Confidence 55678999865432 345678999999999999999999999999999999999999888764 5899999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCC
Q 027089 158 SLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 224 (228)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~ 224 (228)
.+++.+++++|+++|..+++.+++...+. ....+..++|||+|.||++++|+++++|++..||
T Consensus 281 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 281 LLYRLTGDLKYLYRACKFAEFLINYGFKN----GARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcchhhh----ccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 99999999999999999999988875432 1223457999999999999999999999999998
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=2e-34 Score=252.58 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHhcHHhhhcCCCCCceee-cCccccccccchHHHHHHHHccc-CCC---chHHHHHHHHHHHHHhcC-C
Q 027089 9 AQMRAVVDEIIKAGRRLANRGRCPLMYEW-HGKKYWGAAHGLAGIMHVLMDME-LKP---DEVEDVKGTLRYMIKNRF-P 82 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~aHG~aGi~~~L~~~~-~~~---~~~~~~~~~l~~l~~~~~-~ 82 (228)
..+.++++++++...... ....+..+.| .+..++|||||.+||+++|++++ +.. ++.+.++++++++.+... .
T Consensus 129 ~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 207 (355)
T PF05147_consen 129 DIIEKILEKLLESIINDD-PSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD 207 (355)
T ss_dssp HHHHHHHHHCCCHHCCCH-TCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG
T ss_pred HHHHHHHHHHHHHHhhcc-cccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc
Confidence 455666666666654432 1123445556 67889999999999999999998 343 346789999999987554 3
Q ss_pred CCCCCCCCCCCCCc-ccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-CCCCCccccChhhHHHHHHHHH
Q 027089 83 SGNYPSSEGSESDR-LVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLY 160 (228)
Q Consensus 83 ~g~w~~~~~~~~~~-~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~aG~~~~ll~l~ 160 (228)
+++||+.+...... +.+||||++||+++++.+.+.++++.+++.++++++.+++++ ...++|+|||.+|++.++..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~ 287 (355)
T PF05147_consen 208 DGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLY 287 (355)
T ss_dssp CCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHH
Confidence 56699876432111 689999999999999999999999999999999998888866 5678999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCC
Q 027089 161 RLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYE 227 (228)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~~~ 227 (228)
+.+++++|.+.++++.+.+++...+............++|||+|.+||+++|+++.+|++++||-+-
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~l 354 (355)
T PF05147_consen 288 KYTGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSIL 354 (355)
T ss_dssp HHH--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT-
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCccc
Confidence 9999999999999988877766544211111233566899999999999999999999999998653
No 4
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.97 E-value=2e-30 Score=230.68 Aligned_cols=184 Identities=20% Similarity=0.315 Sum_probs=147.6
Q ss_pred ccccccccchHHHHHHHHcccCC----CchHHHHHHHHHHHHHhcCC--CCCCCCCCC-----------CCCCccccccc
Q 027089 40 KKYWGAAHGLAGIMHVLMDMELK----PDEVEDVKGTLRYMIKNRFP--SGNYPSSEG-----------SESDRLVHWCH 102 (228)
Q Consensus 40 ~~~~G~aHG~aGi~~~L~~~~~~----~~~~~~~~~~l~~l~~~~~~--~g~w~~~~~-----------~~~~~~~~WC~ 102 (228)
..++|+|||++||+++|+.+++. ++..+.++++++|+.+..+. .++|++.+. .....+.+|||
T Consensus 165 ~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wCh 244 (382)
T cd04793 165 HINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCY 244 (382)
T ss_pred cccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCC
Confidence 45889999999999999999753 44678899999999875543 346654320 11234679999
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC----CCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL----LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
|++||+++++.+++.++|+++.+.+.++++.+++... ..++++|||.+|++++|+.+++.++++++++.++++.+.
T Consensus 245 G~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~ 324 (382)
T cd04793 245 GTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQ 324 (382)
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999988887765421 257999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcC--------CCCCCCCccccccchHHHHHHHHHccCCC--CCCC
Q 027089 179 LYDRAQKLIAEG--------KMHGGDRPYSLFEGIGGMTHLFLDMIEPS--EARF 223 (228)
Q Consensus 179 i~~~~~~~~~~g--------~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~--~~~~ 223 (228)
++++..+....+ ..+....++|||+|.|||+++|+++++|+ ++.|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~~~~~~W 379 (382)
T cd04793 325 IISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGEIPDTNW 379 (382)
T ss_pred HHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCCCCCCCC
Confidence 998876432111 01234568999999999999999999998 5555
No 5
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.97 E-value=8.3e-30 Score=221.64 Aligned_cols=216 Identities=34% Similarity=0.597 Sum_probs=161.6
Q ss_pred CCCChhHHHHHHHHHHHhcHHhhhcCCCCCcee---ecCccccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHH
Q 027089 4 DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE---WHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMI 77 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~ 77 (228)
++-..+++.++++.+++...... ....|. ..+..+.|++||.+||+++|.++++.. ...+.++++++++.
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 192 (343)
T cd04434 117 EEIFLELIRKILDYLLELGKNGD----GKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYER 192 (343)
T ss_pred CcCHHHHHHHHHHHHHHhhhhcc----CCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 44456677778888877754442 222221 124578899999999999999998642 23566777777776
Q ss_pred HhcCC-CCCCCCCC-CCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCC--CCCCccccChhhHH
Q 027089 78 KNRFP-SGNYPSSE-GSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL--LKRVGICHGISGNT 153 (228)
Q Consensus 78 ~~~~~-~g~w~~~~-~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lCHG~aG~~ 153 (228)
+.... .+.|++.. ..+...+.+||||++||+++++.+++.++++++.+.+++.++.+++... ..+++||||.+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~ 272 (343)
T cd04434 193 RLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNL 272 (343)
T ss_pred HccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchH
Confidence 53333 34565422 2234557899999999999999999999999999999988888877654 36899999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCCCCCCC
Q 027089 154 YVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPA 225 (228)
Q Consensus 154 ~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~ 225 (228)
++++.+++.++++++.+.+.++...+....... .....+....++|||+|.|||+++|+++++| +..+|.
T Consensus 273 ~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~-~~~~~~ 342 (343)
T cd04434 273 LILLLLYKLTGDLKFLARALALALLLISHANGW-LCGGDSTGDRSPGLMTGLAGIALALLRLLNP-KRSWPS 342 (343)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCchHHhhHHHHHHHHHHHhCC-ccccCC
Confidence 999999999999999999999887776654321 1111134567999999999999999999998 555554
No 6
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.97 E-value=4e-30 Score=223.15 Aligned_cols=189 Identities=18% Similarity=0.253 Sum_probs=150.4
Q ss_pred ceeecCccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCcccccccCchHHHH
Q 027089 34 MYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTL 109 (228)
Q Consensus 34 ~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~-~~g~w~~~~~~~~~~~~~WC~G~~Gi~~ 109 (228)
.|......+.|++||.|||+++|..+++. +++++.++++++++.+... ..++|.+.. +..+...+||||.+||++
T Consensus 126 ~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~wchG~aGi~~ 204 (321)
T cd04791 126 LWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVD-EGARLLPYLCSGSAGLGL 204 (321)
T ss_pred ccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcC-CCCccCcccCCCcHHHHH
Confidence 34333456789999999999999999875 3357889999999886433 345565432 223456789999999999
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 027089 110 TLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAE 189 (228)
Q Consensus 110 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~ 189 (228)
+++.+++.++|+++.+.++++++.+.+.. ..++++|||.+|++.+++.+++.+++++|++.+.++.+.+++.......
T Consensus 205 ~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 282 (321)
T cd04791 205 LMLRLEAITGDKRWRDEADGIAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEG- 282 (321)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCccc-
Confidence 99999999999999999999988877543 4679999999999999999999999999999999999888876543110
Q ss_pred CCCCC---CCCccccccchHHHHHHHHHccCCCCCCCCC
Q 027089 190 GKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSEARFPA 225 (228)
Q Consensus 190 g~~~~---~~~~~gl~~G~aGi~~~Ll~l~~~~~~~~~~ 225 (228)
...++ ...++|||+|.|||+++|+++.++...+||+
T Consensus 283 ~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 283 PVFPGDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred cccCCccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 01122 2457999999999999999999987778885
No 7
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.96 E-value=2.9e-28 Score=235.67 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=147.1
Q ss_pred CccccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCcccccccCchHHHHHHHHH
Q 027089 39 GKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKA 114 (228)
Q Consensus 39 ~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~-~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~ 114 (228)
...+.|++||.+||+++|+.+++.. .+.+.++++++++.+... ..++|+.. .......+||||++||+++++.+
T Consensus 635 ~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~--~~~~~~~~WChG~~GI~lal~~~ 712 (825)
T cd04792 635 QPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRK--DGNSFSAAWCHGAPGILLARLEL 712 (825)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCc--CcCCCCCcccCCcHHHHHHHHHH
Confidence 4568899999999999999998643 346788888988865322 24579832 22345679999999999999999
Q ss_pred HHh--hCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh-hhcCC
Q 027089 115 AEV--FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKL-IAEGK 191 (228)
Q Consensus 115 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~-~~~g~ 191 (228)
.+. ++++.+.+++..+++.+++.+...++|||||.+|++++|+.+++.++++++.+.+.+++..++++..+. +.. .
T Consensus 713 ~~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~-g 791 (825)
T cd04792 713 LKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLC-G 791 (825)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccC-C
Confidence 998 788999999999998888777667899999999999999999999999999999999999988887652 112 2
Q ss_pred CCCCCCccccccchHHHHHHHHHccCCC
Q 027089 192 MHGGDRPYSLFEGIGGMTHLFLDMIEPS 219 (228)
Q Consensus 192 ~~~~~~~~gl~~G~aGi~~~Ll~l~~~~ 219 (228)
.+....++|||+|.|||+|+|+|+++|+
T Consensus 792 ~~~~~~~~glm~G~aGIgy~LLrl~~p~ 819 (825)
T cd04792 792 LPRGFESPGLMTGLAGIGYGLLRLAAPD 819 (825)
T ss_pred CCCCCCCchhhhhHHHHHHHHHhhhCCC
Confidence 3445579999999999999999999984
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.93 E-value=1.8e-25 Score=207.69 Aligned_cols=198 Identities=21% Similarity=0.356 Sum_probs=156.9
Q ss_pred HHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCch---HHHHHHHHHHHHHhcCCCCCCCCC
Q 027089 13 AVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSS 89 (228)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~---~~~~~~~l~~l~~~~~~~g~w~~~ 89 (228)
+..+-++..++.+...+-...- +. +..+||+||+|||+++|..+++.++. ++.+.+.+.+++. ++.+
T Consensus 762 k~l~~ais~~~~l~~~~v~~d~--s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~Er~-~f~~------ 831 (963)
T COG4403 762 KFLELAISLGRILMEKIVGNDS--SE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERM-KFSD------ 831 (963)
T ss_pred HHHHHHHHHHHHHHHHhhcccc--cc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHH------
Confidence 3445556666666543211111 22 78899999999999999999986543 6778888887764 4421
Q ss_pred CCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccChhhHHHHHHHHHHHhCCHHHH
Q 027089 90 EGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYL 169 (228)
Q Consensus 90 ~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~ 169 (228)
....||||.+||+++|+.+.+.++|+.++++++.+++.+++.++. ++++|||+.|++++++.+.+++++++.+
T Consensus 832 ------~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~ 904 (963)
T COG4403 832 ------KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLG-NDSLCHGDFGIIEVLLHYAKILSDSELL 904 (963)
T ss_pred ------HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCC-CccccccchHHHHHHHHHHHHhCCHHHH
Confidence 145799999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCC-CCCCCCCC
Q 027089 170 YRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS-EARFPAYE 227 (228)
Q Consensus 170 ~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~-~~~~~~~~ 227 (228)
+.|.+.+..+++++.+....-..+....++|||+|.+||||.|+|..+|. -|.+..+|
T Consensus 905 es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR~~~p~~vpsiL~le 963 (963)
T COG4403 905 ESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLRISSPKFVPSILWLE 963 (963)
T ss_pred HHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHHHhCcccCCceeecC
Confidence 99999988888887653111123335668999999999999999999984 46666553
No 9
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.85 E-value=1.4e-20 Score=163.71 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=128.4
Q ss_pred ccccccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCC-C--CCCCCCCCCCCcccccccCchHHHHHHHH
Q 027089 40 KKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPS-G--NYPSSEGSESDRLVHWCHGAPGVTLTLAK 113 (228)
Q Consensus 40 ~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~-g--~w~~~~~~~~~~~~~WC~G~~Gi~~al~~ 113 (228)
..+.++.||.||++++|..++.. +...+.+.++.+++.+..... . .|+. ...+.....+||||.+||+++++.
T Consensus 92 ~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~HG~~Gi~~~l~~ 170 (343)
T cd04434 92 DLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPM-YFPEGRVNLGLAHGLAGILLALLL 170 (343)
T ss_pred CCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceee-eccCCccccchhhhhHHHHHHHHH
Confidence 45679999999999999999864 345677888888887643322 1 2431 112234567999999999999999
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHHh---C------------CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 114 AAEVFGEKEFLQAAVDAGEVVWKR---G------------LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
+.+.++++.+.+.++.+.....+. . ...+++||||.+|++.+++.+++.++++++.+.+.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (343)
T cd04434 171 LYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALEL 250 (343)
T ss_pred HHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 999998777777776665543221 0 1134899999999999999999999999999998887766
Q ss_pred HHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCC
Q 027089 179 LYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS 219 (228)
Q Consensus 179 i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~ 219 (228)
+...... ...+++||+|.+|++++++++++..
T Consensus 251 ~~~~~~~---------~~~~~~lChG~~G~~~~ll~l~~~~ 282 (343)
T cd04434 251 AWKRGLL---------ELKNPGLCHGIAGNLLILLLLYKLT 282 (343)
T ss_pred HHHhhhc---------cCCCCCcCcCccchHHHHHHHHHHh
Confidence 6555321 0458999999999999999987654
No 10
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.85 E-value=1.5e-20 Score=165.19 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=121.6
Q ss_pred cccccchHHHHHHHHcccCCCc----hHHHHHHHHHHHHHh---cCC--CCCCCCCCCCCCCcccccccCchHHHHHHHH
Q 027089 43 WGAAHGLAGIMHVLMDMELKPD----EVEDVKGTLRYMIKN---RFP--SGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 113 (228)
Q Consensus 43 ~G~aHG~aGi~~~L~~~~~~~~----~~~~~~~~l~~l~~~---~~~--~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~ 113 (228)
..+.||.||++++|..+++..+ ..+.+.++++.+.+. ... ...|+...........+||||.+||+++++.
T Consensus 97 ~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~ 176 (343)
T cd04794 97 DELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQ 176 (343)
T ss_pred hhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHh
Confidence 4788999999999999976421 234455555443321 111 1235433221223457999999999999999
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHHh----CCC----------CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027089 114 AAEVFGEKEFLQAAVDAGEVVWKR----GLL----------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFL 179 (228)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i 179 (228)
+.+.++++++.+.+.++++.+.+. +.. ...+||||.+|++.+++.++++++++++.+.+.+..+.+
T Consensus 177 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04794 177 TPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELI 256 (343)
T ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999889999999999888766443 110 125799999999999999999999999999888776654
Q ss_pred HHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089 180 YDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE 220 (228)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~ 220 (228)
..+ | .. ..++|||||.+|+++.|++++++..
T Consensus 257 ~~~-------g-~~--~~~~~lCHG~~G~~~~lL~~~~~~~ 287 (343)
T cd04794 257 WKR-------G-LL--KKGPGLCHGIAGNAYAFLLLYRLTG 287 (343)
T ss_pred HHh-------C-Cc--cCCCccccCccchHHHHHHHHHHhC
Confidence 322 1 11 1368999999999999999887654
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.83 E-value=1.7e-19 Score=156.48 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=128.3
Q ss_pred cccccccchHHHHHHHHcccCC--CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhh
Q 027089 41 KYWGAAHGLAGIMHVLMDMELK--PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF 118 (228)
Q Consensus 41 ~~~G~aHG~aGi~~~L~~~~~~--~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~ 118 (228)
.+.++.||.+|++++|..++.. +++.+.++++.+++.+.......|+... +......+||||.+||+++++.+++.+
T Consensus 77 ~~~dl~~G~aG~~~~ll~l~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~G~~hG~aGi~~~L~~l~~~t 155 (321)
T cd04791 77 LNIDLASGLAGIGLALLYFARTGDPALLEAAAKIAELLAEALERGDPALLWP-DFDRVDHGLLHGWAGIALFLLRLYKAT 155 (321)
T ss_pred cCCccccchHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccccccc-cCCCCCCccccCcHHHHHHHHHHHHHH
Confidence 4679999999999999998765 3356788888888876433222222111 122345799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhCC-------------CCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Q 027089 119 GEKEFLQAAVDAGEVVWKRGL-------------LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQK 185 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~ 185 (228)
+|+++.+.++++++...+... ...+.+|||.+|++.+++.+++.++|++|.+.+++..+.+....
T Consensus 156 ~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-- 233 (321)
T cd04791 156 GDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC-- 233 (321)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh--
Confidence 999999999998877643210 02367999999999999999999999999999888766664332
Q ss_pred hhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089 186 LIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 218 (228)
Q Consensus 186 ~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~ 218 (228)
..+++||+|.+|++++++.+.+.
T Consensus 234 ----------~~~~~lchG~~G~~~~l~~~~~~ 256 (321)
T cd04791 234 ----------YANPGLFSGTAGLGAHLNDLAAE 256 (321)
T ss_pred ----------ccCccccCCcHhHHHHHHhhccc
Confidence 24789999999999999988764
No 12
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.80 E-value=3.5e-18 Score=152.15 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=121.9
Q ss_pred cccccccchHHHHHHHHccc-CCCchHHHHHHHHHHHHHhcCC--CCCCCCCC---CC------CCCcccccccCchHHH
Q 027089 41 KYWGAAHGLAGIMHVLMDME-LKPDEVEDVKGTLRYMIKNRFP--SGNYPSSE---GS------ESDRLVHWCHGAPGVT 108 (228)
Q Consensus 41 ~~~G~aHG~aGi~~~L~~~~-~~~~~~~~~~~~l~~l~~~~~~--~g~w~~~~---~~------~~~~~~~WC~G~~Gi~ 108 (228)
.+.+|.||.||++.+|...+ ...+..+.+.+.++.+.+.... .+.|+... .. ......+||||.+||+
T Consensus 99 ~~yD~i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~ 178 (382)
T cd04793 99 TNYDVISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHINLGLAHGIAGPL 178 (382)
T ss_pred CCCceeechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccccccchhcchHHH
Confidence 34699999999999999887 3333344566666665543221 12243221 00 1123569999999999
Q ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHHHh--------------------------CCCCCCccccChhhHHHHHHHHHH
Q 027089 109 LTLAKAAEVF-GEKEFLQAAVDAGEVVWKR--------------------------GLLKRVGICHGISGNTYVFLSLYR 161 (228)
Q Consensus 109 ~al~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~lCHG~aG~~~~ll~l~~ 161 (228)
+++..+++.. .++++.+.+.++++...+. ....+++||||.+|++.+++.+++
T Consensus 179 ~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~ 258 (382)
T cd04793 179 ALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGK 258 (382)
T ss_pred HHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999998876 7788888887775442210 001247899999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089 162 LTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE 220 (228)
Q Consensus 162 ~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~ 220 (228)
.++++++.+.+.+..+.+..+.... ....+++||||.+|+++++++++++..
T Consensus 259 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~lChG~~G~~~~l~~~~~~~~ 310 (382)
T cd04793 259 ALDDQKLQEAAEKILKAALKDKKQL-------SKLISPTLCHGLAGLLFIFYLLYKDTN 310 (382)
T ss_pred HhCCHHHHHHHHHHHHHHHhChhhh-------ccCCCCCcCccHHHHHHHHHHHHHHhC
Confidence 9999999998888766655432111 123588999999999999999887654
No 13
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.77 E-value=1.1e-17 Score=162.22 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=123.3
Q ss_pred cccccccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHh
Q 027089 41 KYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV 117 (228)
Q Consensus 41 ~~~G~aHG~aGi~~~L~~~~~~~---~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~ 117 (228)
...++.||.||++++|+.+++.. ...+.+.++++++.+.......|.. ..+.....+||||.+||+++++.+++.
T Consensus 581 ~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~G~aHG~sGi~~aL~~l~~~ 658 (825)
T cd04792 581 EKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIG--PAEQPNLTGFAHGASGIAWALLRLYKV 658 (825)
T ss_pred cCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCcc--cccccccccccccHHHHHHHHHHHHHH
Confidence 45699999999999999998642 3467788888888764333223322 112345679999999999999999999
Q ss_pred hCcHHHHHHHHHHHHHHHHhC------------CCCCCccccChhhHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHH
Q 027089 118 FGEKEFLQAAVDAGEVVWKRG------------LLKRVGICHGISGNTYVFLSLYRL--TGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~lCHG~aG~~~~ll~l~~~--~~~~~~~~~a~~~~~~i~~~~ 183 (228)
++++++.+.+.++++...... .....+||||.+|++.+++.+++. .+++.+.+.+.+..+.+....
T Consensus 659 ~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~ 738 (825)
T cd04792 659 TGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEG 738 (825)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhc
Confidence 999999999988876542210 012478999999999999999999 678777777766655443321
Q ss_pred hhhhhcCCCCCCCCccccccchHHHHHHHHHccC
Q 027089 184 QKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 217 (228)
Q Consensus 184 ~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~ 217 (228)
...+++||||.+|++.+++.+.+
T Consensus 739 -----------~~~~~slCHG~~Gil~~ll~~~~ 761 (825)
T cd04792 739 -----------FGNNHSLCHGDLGNLEILLYAAK 761 (825)
T ss_pred -----------CCCCCeecCCCcchHHHHHHHHH
Confidence 22478899999999999998765
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.62 E-value=2.1e-15 Score=132.12 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=116.1
Q ss_pred cccccchHHHHHHHHcccC---CCchHHHHHHHHHHHHHhcCCCC--CCCCCCCC-CCCcccccccCchHHHHHHHHHH-
Q 027089 43 WGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSG--NYPSSEGS-ESDRLVHWCHGAPGVTLTLAKAA- 115 (228)
Q Consensus 43 ~G~aHG~aGi~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~~g--~w~~~~~~-~~~~~~~WC~G~~Gi~~al~~~~- 115 (228)
..+-+|.+|++.++..+++ .+...+.+.+.++.+.+...... ..+..... ......++.||.+||++++..++
T Consensus 102 ~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~ 181 (355)
T PF05147_consen 102 YDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYK 181 (355)
T ss_dssp CSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCH
T ss_pred chhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhh
Confidence 6899999999999998874 23345667777766654332211 00000000 22346799999999999999998
Q ss_pred HhhCcHHHHHHHHHHHHHHHHhC------C----C-C----CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027089 116 EVFGEKEFLQAAVDAGEVVWKRG------L----L-K----RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180 (228)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~------~----~-~----~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~ 180 (228)
+.++++++.+.+++.++...+.. . . . .++||||.+|++.++..+++.++++.+.+.+.+..+.+.
T Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
T PF05147_consen 182 KGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESIL 261 (355)
T ss_dssp HT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred cccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 68899999999998887765432 1 0 1 479999999999999999999999999999888776665
Q ss_pred HHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccC
Q 027089 181 DRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 217 (228)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~ 217 (228)
+... ...++++|||.+|++++++.+++
T Consensus 262 ~~~~----------~~~~~~lCHG~aG~~~~l~~~~~ 288 (355)
T PF05147_consen 262 QKGL----------FLNNPSLCHGTAGILEILLDLYK 288 (355)
T ss_dssp HH-T----------CTTSS-STTSHHHHHHHHHHHHH
T ss_pred Hccc----------cCCCCceeCchHHhHHHHHHHHH
Confidence 5321 23589999999999999998875
No 15
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.53 E-value=3.4e-14 Score=120.05 Aligned_cols=166 Identities=17% Similarity=0.309 Sum_probs=118.1
Q ss_pred cccchHHHHHHHHcccCC--Cc--hHHHHHHHHHHHHHh--cC-CCCCCCCCC-CC-CCCcccccccCchHHHHHHHHHH
Q 027089 45 AAHGLAGIMHVLMDMELK--PD--EVEDVKGTLRYMIKN--RF-PSGNYPSSE-GS-ESDRLVHWCHGAPGVTLTLAKAA 115 (228)
Q Consensus 45 ~aHG~aGi~~~L~~~~~~--~~--~~~~~~~~l~~l~~~--~~-~~g~w~~~~-~~-~~~~~~~WC~G~~Gi~~al~~~~ 115 (228)
+-.|-+|++++++.+.+. ++ ..+.++++++.++.. .. +.++=|... -+ ......+=.||.+||...++...
T Consensus 156 lLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~ 235 (403)
T KOG2787|consen 156 LLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPT 235 (403)
T ss_pred HHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCC
Confidence 446899999999988653 11 245566666665541 11 111100000 00 11223445999999999998854
Q ss_pred HhhCcHHHHHHHHHHHHHHHHhCCC-----------CC--CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089 116 EVFGEKEFLQAAVDAGEVVWKRGLL-----------KR--VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 182 (228)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~ 182 (228)
-..+++...++++..++..+++.+. .+ ..||||..|+++.|..+|+++++++|++.|.+..+-+.++
T Consensus 236 L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~r 315 (403)
T KOG2787|consen 236 LKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKR 315 (403)
T ss_pred CCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4455677888999999998775432 11 7899999999999999999999999999999998888777
Q ss_pred HhhhhhcCCCCCCCCccccccchHHHHHHHHHccCCCC
Q 027089 183 AQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE 220 (228)
Q Consensus 183 ~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~~~ 220 (228)
.. + +..+|+|+|+||.+|++|.++..++
T Consensus 316 Gl-------L---kkg~GichGvaGNaYvFLsLyRLT~ 343 (403)
T KOG2787|consen 316 GL-------L---KKGVGICHGVAGNAYVFLSLYRLTG 343 (403)
T ss_pred hh-------h---hcCCcccccccCchhhhHhHHHHcC
Confidence 42 1 2368999999999999999987543
No 16
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.16 E-value=2.6e-09 Score=100.93 Aligned_cols=203 Identities=18% Similarity=0.149 Sum_probs=146.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcHHhhhcC--CCCCceeecC-----------ccccccccchHHHHHHHHcccCCCc---h
Q 027089 2 GKDTISTAQMRAVVDEIIKAGRRLANRG--RCPLMYEWHG-----------KKYWGAAHGLAGIMHVLMDMELKPD---E 65 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~G~aHG~aGi~~~L~~~~~~~~---~ 65 (228)
-+.++|.|.+-++...+-++-...+.+. +....|.|.+ ....++--|.+||+.+++.+...++ +
T Consensus 589 ~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y 668 (963)
T COG4403 589 SKHTIDNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYY 668 (963)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHH
Confidence 3567888877665555555544434331 3344444322 2466899999999999999987543 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCCc
Q 027089 66 VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVG 144 (228)
Q Consensus 66 ~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 144 (228)
.+.+.+++.=+.+ ...+. ..+...+=..|.+|..+|+..++..+.|..+...+++.+..+...... +++.
T Consensus 669 ~~ia~~~L~~~~~-sv~~~--------~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d 739 (963)
T COG4403 669 KEIAIKALQDSRK-SVNNN--------LNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPD 739 (963)
T ss_pred HHHHHHHHHHHHH-hhhhc--------cCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 5666666655543 22111 112233457899999999999999999999988888877665543322 4588
Q ss_pred cccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccchHHHHHHHHHccCC
Q 027089 145 ICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 218 (228)
Q Consensus 145 lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~~~~~~gl~~G~aGi~~~Ll~l~~~ 218 (228)
+--|.+|++.+|..+|+.+++|++++.|..+.+.+.+..... + ..+..-.|+-+|.|||+++|+.++..
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~--d---~s~~~l~gfshg~sgi~~tL~~ly~~ 808 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGN--D---SSETVLLGFSHGASGIILTLLKLYEA 808 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcc--c---cccceecccccchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988776542 1 11234679999999999999998864
No 17
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.70 E-value=0.036 Score=49.15 Aligned_cols=139 Identities=21% Similarity=0.158 Sum_probs=92.5
Q ss_pred ccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcC-CC-CCCCCCCC-CCCCcccc-cccCchHHHHHHHHHHHhh
Q 027089 46 AHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PS-GNYPSSEG-SESDRLVH-WCHGAPGVTLTLAKAAEVF 118 (228)
Q Consensus 46 aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~-~~-g~w~~~~~-~~~~~~~~-WC~G~~Gi~~al~~~~~~~ 118 (228)
....+=.+++++.++.. ++.++.+++.++++.++.. .. |.|..... +..+.... =++.-+=++.++..+++.+
T Consensus 52 ~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at 131 (384)
T cd00249 52 LWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVG 131 (384)
T ss_pred EEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhc
Confidence 55666678888887753 4468899999999997544 23 66543321 11111111 2555566778888899999
Q ss_pred CcHHHHHHHHHHHHHHHHhCC------C----CCCccccChhhH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 027089 119 GEKEFLQAAVDAGEVVWKRGL------L----KRVGICHGISGN---TYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 184 (228)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~------~----~~~~lCHG~aG~---~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~ 184 (228)
+++++++.++++++.+.+.-. . .+..--++..+. +..++.++++|++++|++.|+++.+.+.....
T Consensus 132 ~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~ 210 (384)
T cd00249 132 GDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFI 210 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999998877654321 0 000111222233 46788899999999999999999888877653
No 18
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.68 E-value=0.039 Score=51.50 Aligned_cols=132 Identities=18% Similarity=0.223 Sum_probs=86.9
Q ss_pred ccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCC---CCCCC--CCCCCccc----ccccCchHHHHHHHHH
Q 027089 44 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSE--GSESDRLV----HWCHGAPGVTLTLAKA 114 (228)
Q Consensus 44 G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~---w~~~~--~~~~~~~~----~WC~G~~Gi~~al~~~ 114 (228)
-+.|=++|+++++.... ..+..+.+.+.++.+.+.|..+|. ++... .....-.. -||. --++-+++..
T Consensus 61 ~~g~wl~a~a~~~~~~~-D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~--~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG-DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCL--GKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehH--hHHHHHHHHH
Confidence 34466677776665442 223356788888888876666662 33322 00001011 2442 3366778888
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHh--CCCC---CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 115 AEVFGEKEFLQAAVDAGEVVWKR--GLLK---RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
++++++++.++.+.+.++.+.+. .+.. ...+.-|..|+.+.+..+|+.|+|++|++.|+.+.+.
T Consensus 138 y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 138 YEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 89999999999999999888321 1221 1345557888999999999999999999999887543
No 19
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.24 E-value=0.13 Score=44.30 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=84.8
Q ss_pred chHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccC-chHHHHHHHHHHHhhC--
Q 027089 48 GLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAEVFG-- 119 (228)
Q Consensus 48 G~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G-~~Gi~~al~~~~~~~~-- 119 (228)
+..--+-+|++++.. ..+.+.+.+.++|+++-++++|.||.-...... ...-++.. +..++-.+..+.+..+
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 456678888888764 346889999999999989999999964322111 11123322 4455555555554322
Q ss_pred -------cHHHHHHHHHHHHHHHHhCCC-------------------------CCCccccC-hhhHHHHHHHHHHHhCCH
Q 027089 120 -------EKEFLQAAVDAGEVVWKRGLL-------------------------KRVGICHG-ISGNTYVFLSLYRLTGNV 166 (228)
Q Consensus 120 -------~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~lCHG-~aG~~~~ll~l~~~~~~~ 166 (228)
.++....+.++++.+++.... ..+++|-+ .+|++.+|+.+.+ .++
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~--ps~ 202 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPN--PSA 202 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCC--CCH
Confidence 157777788888887653210 13778866 6788888877763 456
Q ss_pred HHHHHHHHHHHHHHHH
Q 027089 167 EYLYRAKAFACFLYDR 182 (228)
Q Consensus 167 ~~~~~a~~~~~~i~~~ 182 (228)
++++.+....+.+...
T Consensus 203 ~i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 203 EIKEAIRAGVAWFDTS 218 (290)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 7777766665555444
No 20
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=95.63 E-value=0.051 Score=46.68 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=80.0
Q ss_pred chHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC--cccccccC-chHHHHHHHHHHHhhCcH
Q 027089 48 GLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAEVFGEK 121 (228)
Q Consensus 48 G~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~--~~~~WC~G-~~Gi~~al~~~~~~~~~~ 121 (228)
....-+-+|++++.. ..+.+.+.+.++|+++.++++|.||..-+.... ....+-.+ +.+++..+..+.+..++.
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 346678889999863 336789999999999989999999865322111 11122233 345555555565554433
Q ss_pred ---------HHHHHHHHHHHHHHHhCC-------------------------CCCCccccC-hhhHHHHHHHHHHHhCCH
Q 027089 122 ---------EFLQAAVDAGEVVWKRGL-------------------------LKRVGICHG-ISGNTYVFLSLYRLTGNV 166 (228)
Q Consensus 122 ---------~~~~~~~~~~~~~~~~~~-------------------------~~~~~lCHG-~aG~~~~ll~l~~~~~~~ 166 (228)
+..+.+.++++++++... -..+++|-+ .+|++.+|+.+++-+ +
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~ 197 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--P 197 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----H
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--H
Confidence 666777777788765321 023888877 789999998888776 6
Q ss_pred HHHHHHHHHHHHHH
Q 027089 167 EYLYRAKAFACFLY 180 (228)
Q Consensus 167 ~~~~~a~~~~~~i~ 180 (228)
++++.+...++.+-
T Consensus 198 ~v~~aI~~AvaWl~ 211 (289)
T PF09492_consen 198 EVLAAIEAAVAWLE 211 (289)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555543
No 21
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=1.7 Score=41.49 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=84.4
Q ss_pred HHHHHHcccC---CCchHHHHHHHHHHHHHhcCCCC---CCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHH
Q 027089 52 IMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSG---NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQ 125 (228)
Q Consensus 52 i~~~L~~~~~---~~~~~~~~~~~l~~l~~~~~~~g---~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~ 125 (228)
.+.+|+..+. .+++.+.++++.+|+.++.+.+. .|.+.. ....+.--=-+=.+.+++.+++.+.+.++++
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~----a~~~g~leDYA~~i~gll~lye~t~d~~yL~ 491 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGE----AAVAGLLEDYAFLILGLLALYEATGDLAYLE 491 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCc----ccccccchhHHHHHHHHHHHHHhhCcHHHHH
Confidence 4566666664 34568999999999987544321 122111 0011111111335778889999999999999
Q ss_pred HHHHHHHHHHH----hC-------------CC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089 126 AAVDAGEVVWK----RG-------------LL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 126 ~~~~~~~~~~~----~~-------------~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~ 183 (228)
.|++..+.++. .. .. .+...=.|++=.+..|+.+..+|++.+|.+.|.+.++..-...
T Consensus 492 ~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 492 KAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 99887766532 11 00 1345567789999999999999999999999998866654443
No 22
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.45 E-value=1.4 Score=38.85 Aligned_cols=169 Identities=10% Similarity=0.057 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHhcHHhhhcCC-CCCceeec--Cc-ccccc-ccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhc
Q 027089 9 AQMRAVVDEIIKAGRRLANRGR-CPLMYEWH--GK-KYWGA-AHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNR 80 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~G~-aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~ 80 (228)
++..+.++++.++..- .. ..+.+.+. ++ ...+. ....+=++.+|+.++.. +..++.++++++++.+..
T Consensus 76 ~~A~~~~~fl~~~~~d----~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~ 151 (384)
T cd00249 76 EAAEHGLEYLDRHGRD----PDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRF 151 (384)
T ss_pred HHHHHHHHHHHHhCcC----CCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3446666666665221 11 23334432 22 12233 33445566666677654 345788999999998754
Q ss_pred C-CCCCCC-CCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-----------C------
Q 027089 81 F-PSGNYP-SSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-----------K------ 141 (228)
Q Consensus 81 ~-~~g~w~-~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~------ 141 (228)
. +.|.+. ....+ .....+ .++..=.+-+++.+...++++++.+.+++.++.+.+.-.. .
T Consensus 152 ~~~~g~~~~~~~~~-~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~ 229 (384)
T cd00249 152 WEDHPGAFDEADPG-TPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYN 229 (384)
T ss_pred ccCCCcccCCCCCC-CCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCc
Confidence 3 334332 21111 111112 1111112346777888899999999998877665442100 0
Q ss_pred ----CCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089 142 ----RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 142 ----~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~ 183 (228)
....-.+.+=.+..++.+++.+++++|++.|+++.+.+.+..
T Consensus 230 ~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~ 275 (384)
T cd00249 230 GDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALG 275 (384)
T ss_pred CcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 011122233356778889999999999999999988887765
No 23
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=95.36 E-value=0.15 Score=47.54 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=77.4
Q ss_pred HHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHH
Q 027089 52 IMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAV 128 (228)
Q Consensus 52 i~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~ 128 (228)
++.+|...+.. ...++.+.+..+|+.+ ... .+. ..+....|+-|-.||..+++.+++.++|+++++.|+
T Consensus 130 ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~-~~~--~~~-----~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~ 201 (520)
T PF07944_consen 130 LLEGLIDYYEATGNERALDVATKLADWVYR-RLS--RLG-----PEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAE 201 (520)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-Hhc--cCC-----HHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455555543 2236778888888733 110 011 011123577799999999999999999999999998
Q ss_pred HHHHHHHHhC---------C---CCCCccccCh--hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089 129 DAGEVVWKRG---------L---LKRVGICHGI--SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 182 (228)
Q Consensus 129 ~~~~~~~~~~---------~---~~~~~lCHG~--aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~ 182 (228)
...+.-.... . ..+....|.. .=...-...+|+.|+|++|++.++++.+.+...
T Consensus 202 ~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~ 269 (520)
T PF07944_consen 202 YFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRH 269 (520)
T ss_pred HHHHHhCCCCCchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 8765422111 0 0134445553 111123356789999999999999988877665
No 24
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=0.66 Score=42.70 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=101.5
Q ss_pred CCCChhHHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCC
Q 027089 4 DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPS 83 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~ 83 (228)
|++=+-+.+...+.+.+.+..-..+. .-..|....-....+.|=++-+++.|..-.. +.-.+++-++++.+-+.+-++
T Consensus 28 d~v~~~~~d~Lldr~~ea~~l~~~d~-~r~g~~~q~f~dsdlgkwlea~A~~l~~~~d-p~Lekr~D~vi~~~a~~Qded 105 (589)
T COG3533 28 DVVVSLQADRLLDRCHEAAMLPAKDP-FRGGWETQMFWDSDLGKWLEAAAYSLANKGD-PELEKRIDEVVEELARAQDED 105 (589)
T ss_pred eeEEecCHHHHHhHhhhccCCCccCc-ccccceeeeeccccHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhccC
Confidence 44445556777777777763332221 0023331112345788888888887665321 222345666676665545556
Q ss_pred C---CCCCCC-CCCCCcccccccCc--hHHHH-HHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC--C-CCccccChhhHH
Q 027089 84 G---NYPSSE-GSESDRLVHWCHGA--PGVTL-TLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL--K-RVGICHGISGNT 153 (228)
Q Consensus 84 g---~w~~~~-~~~~~~~~~WC~G~--~Gi~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~lCHG~aG~~ 153 (228)
| .|.... +++......|||=. +|-+. +.+..++.++..++.+.+.+.++.+.+. +. . -.-.-+|-.++-
T Consensus 106 GYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tv-fgp~~~q~~g~~gH~eie 184 (589)
T COG3533 106 GYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATV-FGPEEDQVPGYCGHPEIE 184 (589)
T ss_pred CcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhh-cCccccccccccCCCchh
Confidence 5 265432 22233456677651 22222 2344556688889999888888876542 22 1 133444778899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 027089 154 YVFLSLYRLTGNVEYLYRAKAFA 176 (228)
Q Consensus 154 ~~ll~l~~~~~~~~~~~~a~~~~ 176 (228)
.++.++|+.|++++|++.|+.+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi 207 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFI 207 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999998874
No 25
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.82 Score=43.58 Aligned_cols=76 Identities=25% Similarity=0.307 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCCCccccC--------------hhhHHHHHHHHHHHhCCHHHHHHH
Q 027089 107 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHG--------------ISGNTYVFLSLYRLTGNVEYLYRA 172 (228)
Q Consensus 107 i~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG--------------~aG~~~~ll~l~~~~~~~~~~~~a 172 (228)
++.++..++.+++++++.+.|+++.+.+.++-.. + -+||. .+=.+..++.+|+++.+.+|++.|
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~-~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A 493 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYV-D-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKA 493 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc-c-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 5667888899999999999999999887665322 2 34443 233567889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027089 173 KAFACFLYDRAQ 184 (228)
Q Consensus 173 ~~~~~~i~~~~~ 184 (228)
.++.+.++....
T Consensus 494 ~~L~~~~i~~f~ 505 (667)
T COG1331 494 IELADEAIADFW 505 (667)
T ss_pred HHHHHHHHHHhc
Confidence 999888877754
No 26
>PLN02993 lupeol synthase
Probab=92.93 E-value=0.77 Score=44.73 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 027089 10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 89 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~ 89 (228)
-|++.+++|.+.+...++| .+.-.+.+..|.+-.+.+|..........+.++++++|+.+.+..+|.|-.+
T Consensus 591 ~i~rAv~yL~~~Q~~DGSW---------~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs 661 (763)
T PLN02993 591 SIEKAVQFIESKQTPDGSW---------YGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGES 661 (763)
T ss_pred HHHHHHHHHHHhcCCCCCc---------ccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcC
Confidence 4566666666665555433 2333345666999999999877665444567999999999878889999653
Q ss_pred CCCCCCccccccc--Cc----hHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC
Q 027089 90 EGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG 138 (228)
Q Consensus 90 ~~~~~~~~~~WC~--G~----~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (228)
-..- ....|.. |. ...++|++.+...-..++..+.+.++++.++++.
T Consensus 662 ~~S~--~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q 714 (763)
T PLN02993 662 YLSC--PEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQ 714 (763)
T ss_pred cCcC--CCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Confidence 2110 0011221 11 5677777776655222232345667777776643
No 27
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=92.17 E-value=0.85 Score=40.67 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=73.3
Q ss_pred HHHHHHHHcccC---CC-----chHHHHHHHHHHHHHhcC-C---CCC--CCCCCCCC-CCcccccccCchHHHHHHHHH
Q 027089 50 AGIMHVLMDMEL---KP-----DEVEDVKGTLRYMIKNRF-P---SGN--YPSSEGSE-SDRLVHWCHGAPGVTLTLAKA 114 (228)
Q Consensus 50 aGi~~~L~~~~~---~~-----~~~~~~~~~l~~l~~~~~-~---~g~--w~~~~~~~-~~~~~~WC~G~~Gi~~al~~~ 114 (228)
+=++.++.++++ .. .+++.++++.+++.. .. + .|. |.....+. .+....-.+|..- ...+++
T Consensus 91 aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~--~laarL 167 (370)
T PF03663_consen 91 AWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAA--QLAARL 167 (370)
T ss_dssp HHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----TEEEEEEHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccCCCCCcccccchHHHH--HHHHHH
Confidence 335666677764 23 568899999998874 44 2 133 55321111 1122233343333 334456
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHhCCC--CC---------CccccC--------hhhH-HHHHHHHHHHhCCH-HHHHHHH
Q 027089 115 AEVFGEKEFLQAAVDAGEVVWKRGLL--KR---------VGICHG--------ISGN-TYVFLSLYRLTGNV-EYLYRAK 173 (228)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~lCHG--------~aG~-~~~ll~l~~~~~~~-~~~~~a~ 173 (228)
+++++++.+++.|++..+.+.+..+. ++ ..=|.- +.|+ +..+..+|+.|+++ .|+++|.
T Consensus 168 ~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~ 247 (370)
T PF03663_consen 168 YRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAE 247 (370)
T ss_dssp HHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 66789999999999987665542111 00 111211 2333 46778899999877 9999999
Q ss_pred HHHHHHHHHH
Q 027089 174 AFACFLYDRA 183 (228)
Q Consensus 174 ~~~~~i~~~~ 183 (228)
++++..++..
T Consensus 248 ~la~~~~~~~ 257 (370)
T PF03663_consen 248 KLADAAINHF 257 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887773
No 28
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=91.43 E-value=1.8 Score=38.57 Aligned_cols=72 Identities=28% Similarity=0.410 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCcH-----HHHHHHHHHHHHHHHhCCCCCCccccC--------------------hhhHHHHHHHHHH
Q 027089 107 VTLTLAKAAEVFGEK-----EFLQAAVDAGEVVWKRGLLKRVGICHG--------------------ISGNTYVFLSLYR 161 (228)
Q Consensus 107 i~~al~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lCHG--------------------~aG~~~~ll~l~~ 161 (228)
.+++++.+++.++++ ++++.++...+.+.. +. +...|.| +.-.+.+..++|+
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~w--d~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~ 169 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GW--DDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR 169 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB---SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hc--CCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence 788999999999999 999999998887763 22 1223433 2345667778999
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 027089 162 LTGNVEYLYRAKAFACFLYD 181 (228)
Q Consensus 162 ~~~~~~~~~~a~~~~~~i~~ 181 (228)
+|+++.|++.|+++.+.+.+
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHhhc
Confidence 99999999999999888877
No 29
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=91.30 E-value=0.35 Score=42.39 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=78.1
Q ss_pred HHHHHHcccC--CCchHHHHHHHHHHHHHhcC--CCCCCCCCCCCCCC-cccccccCchHHHHHHHHHHHhhCcHHHHHH
Q 027089 52 IMHVLMDMEL--KPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSESD-RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQA 126 (228)
Q Consensus 52 i~~~L~~~~~--~~~~~~~~~~~l~~l~~~~~--~~g~w~~~~~~~~~-~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~ 126 (228)
.+++++.++. .++.++.+++.++|+.+... ++|.|........+ ....=++..+=+++++.. ...++++++.+.
T Consensus 26 ~~~~fa~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYRLGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCChhHHHH
Confidence 4455555543 34568899999999997544 34666543211111 111123333444566666 566888999999
Q ss_pred HHHHHHHHHHhC-------CC----CCCccccChh---hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089 127 AVDAGEVVWKRG-------LL----KRVGICHGIS---GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 127 ~~~~~~~~~~~~-------~~----~~~~lCHG~a---G~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~ 183 (228)
|+++++.+.+.- +. .+.+.-.+.. =.+++++.++++++++.|++++.++++.+++..
T Consensus 105 A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f 175 (346)
T PF07221_consen 105 AEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRF 175 (346)
T ss_dssp HHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 998887775431 00 1112222222 235677889999999999999999888877443
No 30
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=90.69 E-value=7.5 Score=33.88 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=81.4
Q ss_pred CchHHHHHHHHHHHHHhcC--CCCC-CCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh--
Q 027089 63 PDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-- 137 (228)
Q Consensus 63 ~~~~~~~~~~l~~l~~~~~--~~g~-w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (228)
+++.+.+.++.+++.+... .+|. |.. ......-|+.+.--..-.+..+++.++|+++.+++.+-++...+.
T Consensus 86 ~~y~~~~~~~a~~~l~~~~~~~~G~~~~~----~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 86 EKYKDAAIQAADWLLARRPRTSDGGFWHN----RPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp HHHHHHHHHHHHHHHHTSCBECTGCBECT----TTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccC----CCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence 4467888889987776444 2454 331 123455799988778888888999999999999887766554432
Q ss_pred ----CCC---------C---CCccccChhhHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHhhhhhcCC----C
Q 027089 138 ----GLL---------K---RVGICHGISGNTYVFLSLYRLTGN-----VEYLYRAKAFACFLYDRAQKLIAEGK----M 192 (228)
Q Consensus 138 ----~~~---------~---~~~lCHG~aG~~~~ll~l~~~~~~-----~~~~~~a~~~~~~i~~~~~~~~~~g~----~ 192 (228)
++. . +.++.-|.+=.+.-+..+++.+++ +.+++.++++++.+..... ++|- +
T Consensus 162 d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~---~~G~w~~~~ 238 (336)
T PF07470_consen 162 DPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD---EDGLWYQDL 238 (336)
T ss_dssp -TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST---TTSBEBSBT
T ss_pred CCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC---CCCCcceec
Confidence 110 0 112444444344444455555543 4445555555444332211 1221 1
Q ss_pred CCCC-CccccccchHHHHHHHHHc
Q 027089 193 HGGD-RPYSLFEGIGGMTHLFLDM 215 (228)
Q Consensus 193 ~~~~-~~~gl~~G~aGi~~~Ll~l 215 (228)
..+. .++-=-.|+|.+++.|++.
T Consensus 239 ~~~~~~~~~etSatA~~a~~l~~g 262 (336)
T PF07470_consen 239 DDPDPGNYRETSATAMFAYGLLRG 262 (336)
T ss_dssp TTTTTTS-BEHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHH
Confidence 1111 2333356788888888763
No 31
>PLN03012 Camelliol C synthase
Probab=89.78 E-value=2.8 Score=40.92 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 027089 10 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 89 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~ 89 (228)
-|.+.++.|.+.+...++ ++ +.-.+.+..|.+-++.+|..........+.++++++|+.+.|..+|.|..+
T Consensus 591 ~i~rAv~~L~~~Q~~DGs------W~---G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs 661 (759)
T PLN03012 591 FIKKAAEYIENIQMLDGS------WY---GNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGES 661 (759)
T ss_pred HHHHHHHHHHHhcCCCCC------Cc---ccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCC
Confidence 345555555555544432 22 333334556899999998877664333568999999999988889999764
Q ss_pred CCCCCCccccccc--Cc----hHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089 90 EGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 90 ~~~~~~~~~~WC~--G~----~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
-..- ....|.. |. ...++|++.+...-.-++--..+.++++.++++
T Consensus 662 ~~Sc--~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~ 713 (759)
T PLN03012 662 YLSC--PKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINS 713 (759)
T ss_pred CCCC--CCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHc
Confidence 3210 0111222 22 566777776655421111012456666777654
No 32
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=89.56 E-value=13 Score=32.18 Aligned_cols=118 Identities=9% Similarity=-0.059 Sum_probs=74.2
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC---------------CCCccccC-hhhHHHHHHHHHHHhCC-
Q 027089 103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL---------------KRVGICHG-ISGNTYVFLSLYRLTGN- 165 (228)
Q Consensus 103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lCHG-~aG~~~~ll~l~~~~~~- 165 (228)
++.--+..|+.+++.++++.+++.+.++++.++..... ...++|-. ...++.+|..+++..++
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 34556667778888899999999999999999764221 11333322 56777777777764331
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhh-hhcC---------CC-C---CCCCccccccc-hHHHHHHHHHccCCCC
Q 027089 166 --------VEYLYRAKAFACFLYDRAQKL-IAEG---------KM-H---GGDRPYSLFEG-IGGMTHLFLDMIEPSE 220 (228)
Q Consensus 166 --------~~~~~~a~~~~~~i~~~~~~~-~~~g---------~~-~---~~~~~~gl~~G-~aGi~~~Ll~l~~~~~ 220 (228)
++....+.+..++|+...... .+.+ .+ | ...+.+|+..+ ++||..+|+++.+|+.
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~ 202 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSA 202 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCH
Confidence 345555556666666554322 0110 11 1 12346888888 6789999998887763
No 33
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=89.00 E-value=4.6 Score=35.22 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=52.7
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CC-----------CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 111 LAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KR-----------VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
++.+++.++|+++++.+.++++.++++... .+ .+++-+..=+..+|..+++.++|++|.+.|.+-+..
T Consensus 76 ~~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~ 155 (336)
T PF07470_consen 76 LLDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRL 155 (336)
T ss_dssp HHHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 355888899999999999999966654332 12 335555555889999999999999999988776555
Q ss_pred HHHH
Q 027089 179 LYDR 182 (228)
Q Consensus 179 i~~~ 182 (228)
..+.
T Consensus 156 ~~~~ 159 (336)
T PF07470_consen 156 TRKY 159 (336)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 34
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=88.64 E-value=5.7 Score=34.27 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCCCC---------------CccccC-hhhHHHHHHHHHHHhCCH
Q 027089 103 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR---------------VGICHG-ISGNTYVFLSLYRLTGNV 166 (228)
Q Consensus 103 G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~lCHG-~aG~~~~ll~l~~~~~~~ 166 (228)
.+.--+..|+.++..++|+++++.+.++++.+++..+.+. .++=-+ ..+++.+|..+++..++-
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 3456677778888889999999999999999987643210 111112 457777777777766644
Q ss_pred ---------HHHHHHHHHHHHHHHHHhhh-h----hc-----CCC-C---CCCCccccccc-hHHHHHHHHHccCCC
Q 027089 167 ---------EYLYRAKAFACFLYDRAQKL-I----AE-----GKM-H---GGDRPYSLFEG-IGGMTHLFLDMIEPS 219 (228)
Q Consensus 167 ---------~~~~~a~~~~~~i~~~~~~~-~----~~-----g~~-~---~~~~~~gl~~G-~aGi~~~Ll~l~~~~ 219 (228)
+..+.+.+..++|+...... . ++ -.+ | ...+.+|++.+ ++||..+|+++.+|+
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 44444445555555443311 0 10 011 1 13457889888 789999999999886
No 35
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=88.55 E-value=1.6 Score=38.36 Aligned_cols=73 Identities=27% Similarity=0.311 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-CCCCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089 108 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 108 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~ 183 (228)
.+...++++.++|+++++.+..-.+..+..+ +. ..++=|=.+ ..+|+.+++.|++++|++.+.++++.+++..
T Consensus 42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~-~~~id~i~~--g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~ 115 (357)
T COG4225 42 LYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLP-PRNIDHIAA--GLTLLPLYEQTGDPRYLEAAIKLASWLVHEP 115 (357)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCC-ccchhhhcc--CceeeehhhhhCCHHHHHHHHHHHHHHhhCc
Confidence 4556677888999999999988777666655 42 112222222 3467788999999999999999999988775
No 36
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=85.59 E-value=7.5 Score=34.24 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC------CC-----CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027089 108 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------LL-----KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFA 176 (228)
Q Consensus 108 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~ 176 (228)
.+.++-+++.++|+++++.+++..+.+.... +. ..-.||-|..=-..++.++.+.+++++|.+.+..-+
T Consensus 85 g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF 164 (357)
T COG4225 85 GLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQF 164 (357)
T ss_pred CceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456778889999999999998887765432 11 125689998888889999999999999999876543
No 37
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=83.96 E-value=8.4 Score=34.02 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=61.7
Q ss_pred ccCchHH-HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-----C-------------CCCCccccChhhHHHHHHHHHH
Q 027089 101 CHGAPGV-TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-----L-------------LKRVGICHGISGNTYVFLSLYR 161 (228)
Q Consensus 101 C~G~~Gi-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~lCHG~aG~~~~ll~l~~ 161 (228)
|.--+|. ++-+..+...++++-+.+.+.++++.+|++. + .++.++--|.-...+.++.+|-
T Consensus 183 ctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi 262 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI 262 (587)
T ss_pred hhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence 4444444 3445666777899999999999999998742 1 0245666777777888999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHh
Q 027089 162 LTGNVEYLYRAKAFACFLYDRAQ 184 (228)
Q Consensus 162 ~~~~~~~~~~a~~~~~~i~~~~~ 184 (228)
..+|+.|+++-.+--+.+..+..
T Consensus 263 llgddsfldrfn~hydai~ryi~ 285 (587)
T KOG2430|consen 263 LLGDDSFLDRFNKHYDAIKRYIN 285 (587)
T ss_pred eeccHHHHHHHHHHHHHHHHHhc
Confidence 99999999998877666655543
No 38
>PLN02993 lupeol synthase
Probab=78.78 E-value=23 Score=34.80 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=79.0
Q ss_pred ccccccchHHHHHHHHcccC-CCc-----hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHH
Q 027089 42 YWGAAHGLAGIMHVLMDMEL-KPD-----EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAA 115 (228)
Q Consensus 42 ~~G~aHG~aGi~~~L~~~~~-~~~-----~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~ 115 (228)
....+...+-++-+|..+.+ .++ ..+.++++++|+.+.|.++|.|.... .....||+.-.+.++..+.
T Consensus 559 D~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~W------gv~y~YgT~~aL~aL~a~G 632 (763)
T PLN02993 559 EREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNW------GICFIYATWFALGGLAAAG 632 (763)
T ss_pred CCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCccccc------ccccCcHHHHHHHHHHHcC
Confidence 46778889999999988754 222 24678999999998888899997533 2345667777777776655
Q ss_pred HhhCcHHHHHHHHHHHHHHHHhCC-----CCCCccc------c--Ch----hhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 116 EVFGEKEFLQAAVDAGEVVWKRGL-----LKRVGIC------H--GI----SGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lC------H--G~----aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
+...+ ...++++++.+.+... ..+..-| . |. ...+++++-+...-..++.-..+.+..+.
T Consensus 633 ~~~~~---~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~ 709 (763)
T PLN02993 633 KTYND---CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKL 709 (763)
T ss_pred CCCCC---cHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 43333 2345666666654321 1222122 1 12 66777777776653222222234445555
Q ss_pred HHHH
Q 027089 179 LYDR 182 (228)
Q Consensus 179 i~~~ 182 (228)
+++.
T Consensus 710 L~~~ 713 (763)
T PLN02993 710 IITS 713 (763)
T ss_pred HHhc
Confidence 6665
No 39
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=78.51 E-value=2.3 Score=30.35 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089 69 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 69 ~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
|+++++|+.+.+.++|.|..... .-+..+...+.++.. .+++.+.+.+.++++.+.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-------~~~~~t~~~~~al~~----~~~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-------SDVFVTAALILALAA----AGDAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp ---------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Ccccccccccccccccccccccc-------ccccccccccccccc----cCCCCcHHHHHHHHHHHHHh
Confidence 46788899888888999965321 123333333333333 34557777778888887664
No 40
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=76.79 E-value=49 Score=28.62 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcC----------
Q 027089 12 RAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRF---------- 81 (228)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~---------- 81 (228)
++-++.+.+.+.....|...+ .=.-..+=++.+|......+++.+.++++++|+.+.+.
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~-----------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~ 70 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY-----------SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVK 70 (348)
T ss_pred chHHHHHHHhccCCCCccccC-----------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhc
Confidence 456777887777664442111 11112333444444444434566789999999998663
Q ss_pred ----CCCCCCCCCCCCCCccccccc--CchHHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHh
Q 027089 82 ----PSGNYPSSEGSESDRLVHWCH--GAPGVTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 82 ----~~g~w~~~~~~~~~~~~~WC~--G~~Gi~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~ 137 (228)
++|.|+-.. ...+|.. -++-++.+++.+....+ +....+.+.++++.+.+.
T Consensus 71 ~~~~~~Ggw~y~~-----~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 129 (348)
T cd02889 71 YRHLRKGGWAFST-----ANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSM 129 (348)
T ss_pred CCCCCCCcCcccC-----cCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHh
Confidence 233333211 0001222 23445555555555432 345667777777777654
No 41
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=75.43 E-value=3.6 Score=29.33 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 027089 11 MRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS 88 (228)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~ 88 (228)
|.+.++.|++.+....+|... | . +-.-..+..+.+|..+. ...+.+.+++.++|+.+.+.++|.|..
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~---~--~-----~~~~~t~~~~~al~~~~-~~~~~~ai~ka~~~l~~~Q~~dG~w~~ 67 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYN---W--G-----SDVFVTAALILALAAAG-DAAVDEAIKKAIDWLLSHQNPDGGWGY 67 (109)
T ss_dssp ---------------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-
T ss_pred Ccccccccccccccccccccc---c--c-----ccccccccccccccccC-CCCcHHHHHHHHHHHHHhcCCCCCCCC
Confidence 467788888888888766211 1 1 00111222222222222 223456789999999987778898875
No 42
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=73.35 E-value=31 Score=29.87 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHHhCC---------
Q 027089 70 KGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE-KEFLQAAVDAGEVVWKRGL--------- 139 (228)
Q Consensus 70 ~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------- 139 (228)
.+.++|+.+++.++|.|+... .=....++++..+.. .+. +++.+.++++++.+.+...
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~-----------~~~~~Ta~~~~al~~-~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~ 69 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY-----------SQVWDTALALQALLE-AGLAPEFDPALKKALEWLLKSQIRDNPDDWKV 69 (348)
T ss_pred chHHHHHHHhccCCCCccccC-----------CchHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHhcCCCCCCCchhh
Confidence 467899998888889997531 001112233333322 222 4677778888887766542
Q ss_pred ----CCCCc-----cccC------hhhHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHH
Q 027089 140 ----LKRVG-----ICHG------ISGNTYVFLSLYRLTG--NVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 140 ----~~~~~-----lCHG------~aG~~~~ll~l~~~~~--~~~~~~~a~~~~~~i~~~~ 183 (228)
..+-+ .+|| ++-++.+|..+....+ +..+.+.+.+..++++...
T Consensus 70 ~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q 130 (348)
T cd02889 70 KYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQ 130 (348)
T ss_pred cCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhc
Confidence 11111 2322 2334455555554442 3455666777777777663
No 43
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=73.20 E-value=26 Score=32.85 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHh-----CCC-----------CCC---ccccC--hhhHH-HHHHHHHHHhCCH
Q 027089 109 LTLAKAAEVFGEKEFLQAAVDAGEVVWKR-----GLL-----------KRV---GICHG--ISGNT-YVFLSLYRLTGNV 166 (228)
Q Consensus 109 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~---~lCHG--~aG~~-~~ll~l~~~~~~~ 166 (228)
=.++-++.+++++.+++.|+...+.+... ++. +.. +-|.. .+|.+ .=|.++++.|+|+
T Consensus 162 GGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~ 241 (522)
T PTZ00470 162 GGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDP 241 (522)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCH
Confidence 34455556677999999999888877531 110 011 11211 22222 2256789999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027089 167 EYLYRAKAFACFLYDR 182 (228)
Q Consensus 167 ~~~~~a~~~~~~i~~~ 182 (228)
+|.+.|+++.+.+.+.
T Consensus 242 kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 242 KYAEYVDKVMDALFSM 257 (522)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998887654
No 44
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=69.30 E-value=34 Score=29.16 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 69 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 69 ~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
.+++++|+.+.+..+|.|....+.+.+....||
T Consensus 150 ~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~c 182 (287)
T cd02894 150 VDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFC 182 (287)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHH
Confidence 588899998766567877654333444455555
No 45
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.78 E-value=1.1e+02 Score=28.75 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCCc
Q 027089 66 VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVG 144 (228)
Q Consensus 66 ~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 144 (228)
++.+.+..+++.+ .+. ...+...+.| |-+||-+|+.+++..+++++|.+.+...++.--...+. ...-
T Consensus 153 ldV~~rlADhi~t-vfg---------p~~~q~~g~~-gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e 221 (589)
T COG3533 153 LDVVCRLADHIAT-VFG---------PEEDQVPGYC-GHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDE 221 (589)
T ss_pred HHHHHHHHHhhhh-hcC---------cccccccccc-CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchh
Confidence 5566677777654 331 1122334555 77999999999999999999999998766432111111 0111
Q ss_pred cccChhhHHHHH-----HHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089 145 ICHGISGNTYVF-----LSLYRLTGNVEYLYRAKAFACFLYDR 182 (228)
Q Consensus 145 lCHG~aG~~~~l-----l~l~~~~~~~~~~~~a~~~~~~i~~~ 182 (228)
+- |.--+-.+. -.++..++|+.+...+..+-+.+.++
T Consensus 222 ~~-~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k 263 (589)
T COG3533 222 LE-GGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTR 263 (589)
T ss_pred hh-hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 11 111111111 13467899999888877766665544
No 46
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=67.68 E-value=71 Score=30.80 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 027089 8 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYP 87 (228)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~ 87 (228)
..-|++-++.|.+.++....| +.-.+ ..+..|.+-++.+|....... ..+.++++++|+.+.+.++|.|.
T Consensus 470 ~~~i~rav~~L~~~Q~~dG~W------~g~wg---~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWg 539 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPDGSW------FGRWG---VNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWG 539 (635)
T ss_pred hHHHHHHHHHHHHccCCCCCC------ccCCC---CccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCC
Confidence 345666677777666544322 22111 234567777777777654432 24678999999998888899997
Q ss_pred CCCCC-CCCccccccc-CchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089 88 SSEGS-ESDRLVHWCH-GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 88 ~~~~~-~~~~~~~WC~-G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
..... +.+...+-.. =.+..+++++.+...-..+ .+.++++++.+.+.
T Consensus 540 e~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~--~~~I~rav~~L~~~ 589 (635)
T TIGR01507 540 EDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAE--SEAARRGVQYLVET 589 (635)
T ss_pred CCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHh
Confidence 43211 1111111101 1234555555554442111 23566677776654
No 47
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=66.11 E-value=6.5 Score=23.45 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 69 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 69 ~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
.+++++|+.+.+..+|.|....+.+.+....||
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHH
Confidence 567889999877788888765544444455666
No 48
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=65.55 E-value=23 Score=30.00 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 67 EDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 67 ~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
+..+++++|+.+.+..+|.|......+.+....||
T Consensus 146 ~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~ 180 (286)
T cd02890 146 IDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFC 180 (286)
T ss_pred hhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHH
Confidence 45788899998866678888654333344445555
No 49
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=64.53 E-value=10 Score=30.66 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=26.4
Q ss_pred ccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 027089 144 GICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 180 (228)
Q Consensus 144 ~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~ 180 (228)
++|-|. .+-+|.++|++|+|++|++.|++.++...
T Consensus 29 amaQG~--a~s~l~RAy~~t~d~~Yl~aA~~al~~f~ 63 (189)
T PF06662_consen 29 AMAQGQ--AISVLARAYQLTGDEKYLDAAKKALNSFK 63 (189)
T ss_pred HHHHHH--HHHHHHHHHHhHCCHHHHHHHHHHHHHhc
Confidence 444443 35677899999999999999999765543
No 50
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=64.20 E-value=86 Score=30.21 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=48.9
Q ss_pred cccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccC----chHHHHHHHHHHHhhCc
Q 027089 45 AAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHG----APGVTLTLAKAAEVFGE 120 (228)
Q Consensus 45 ~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G----~~Gi~~al~~~~~~~~~ 120 (228)
+..|.+-++.+|.......+ .+.++++++|+.+.+..+|.|........ ...+..| ....+++++.+... +.
T Consensus 504 ~~Y~T~~al~aL~~~G~~~~-~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~--~~~y~~~~~S~~~~TA~Al~aL~~~-g~ 579 (634)
T TIGR03463 504 FTYGTFHGVMGLRAAGASPD-DMALQRAAAWLRSYQRADGGWGEVYESCL--QARYVEGKQSQAVMTSWALLALAEA-GE 579 (634)
T ss_pred CcHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCCCCccCccCccc--cccccCCCCCcHHHHHHHHHHHHHc-CC
Confidence 45577777777766554322 36789999999987778999965321100 0011112 24555666655543 11
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027089 121 KEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (228)
.-.+.+.++++.+.++
T Consensus 580 -~~~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 580 -GGHDAVQRGVAWLRSR 595 (634)
T ss_pred -cCCHHHHHHHHHHHHh
Confidence 1123455666666654
No 51
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=62.38 E-value=1.1e+02 Score=29.47 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=48.4
Q ss_pred cccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCccccc-ccCchHHHHHHHHHHHhhCcHH
Q 027089 45 AAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGS-ESDRLVHW-CHGAPGVTLTLAKAAEVFGEKE 122 (228)
Q Consensus 45 ~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~~~~-~~~~~~~W-C~G~~Gi~~al~~~~~~~~~~~ 122 (228)
+..|.+=++.+|..+.......+.++++++|+.+.+..+|.|...... ..+....- -.-.+-++++++.+...- +..
T Consensus 487 y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag-~~~ 565 (621)
T TIGR01787 487 YTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAG-EAD 565 (621)
T ss_pred CchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcC-ccc
Confidence 344555566667666543222367899999999877789999643211 11111110 011234455555444332 111
Q ss_pred HHHHHHHHHHHHHHh
Q 027089 123 FLQAAVDAGEVVWKR 137 (228)
Q Consensus 123 ~~~~~~~~~~~~~~~ 137 (228)
.+.++++++.+.+.
T Consensus 566 -~~ai~rgv~~L~~~ 579 (621)
T TIGR01787 566 -SEAIERGVKYLLET 579 (621)
T ss_pred -hHHHHHHHHHHHHh
Confidence 23577777777654
No 52
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=58.04 E-value=27 Score=32.88 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=54.9
Q ss_pred hHHHHHHHH---HHHhhCcHHHHHHHHHHHHHHHHhC----CC-------------CCCccccChhhHHHHHHHHHHHhC
Q 027089 105 PGVTLTLAK---AAEVFGEKEFLQAAVDAGEVVWKRG----LL-------------KRVGICHGISGNTYVFLSLYRLTG 164 (228)
Q Consensus 105 ~Gi~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~lCHG~aG~~~~ll~l~~~~~ 164 (228)
+|++..+++ +.++++|+++..-|.+|++.+|+.. +. .+.++=-|.=...+-++..|-.++
T Consensus 196 Ag~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfg 275 (622)
T KOG2429|consen 196 AGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFG 275 (622)
T ss_pred ccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecC
Confidence 455444444 4567899999999999999999752 11 124444444445556666677899
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 027089 165 NVEYLYRAKAFACFLYDRAQK 185 (228)
Q Consensus 165 ~~~~~~~a~~~~~~i~~~~~~ 185 (228)
|+++++.-.+..+.+.++.++
T Consensus 276 d~e~lemf~ea~~ai~~y~r~ 296 (622)
T KOG2429|consen 276 DPELLEMFNEAYEAIQKYTRK 296 (622)
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999998877766666666554
No 53
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=57.88 E-value=88 Score=28.12 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=76.9
Q ss_pred HHHHHHHcccCCCchHHHHHHHHHHHHHhcC-CC---C--CCCCCCC--CC--CCcccccccCchHHHHHHHHHHHhhCc
Q 027089 51 GIMHVLMDMELKPDEVEDVKGTLRYMIKNRF-PS---G--NYPSSEG--SE--SDRLVHWCHGAPGVTLTLAKAAEVFGE 120 (228)
Q Consensus 51 Gi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~-~~---g--~w~~~~~--~~--~~~~~~WC~G~~Gi~~al~~~~~~~~~ 120 (228)
|..|.+...-.. +..+...++++|-.++.. .+ + .|..... .. .....+=..|..=|+++++++.+.-++
T Consensus 56 GQgYGMl~Av~a-~Dr~~Fd~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~ 134 (376)
T PRK11097 56 GQSYGLFFALVA-NDRAAFDKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKE 134 (376)
T ss_pred hHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCc
Confidence 444444443222 234567777777765433 22 2 1532110 00 011223356667799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC----CCccccChhh--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027089 121 KEFLQAAVDAGEVVWKRGLLK----RVGICHGISG--------------NTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 182 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----~~~lCHG~aG--------------~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~ 182 (228)
++|.+++...++.+++..... ...|-=|..| ...++..+++.+++..+.+.+....+.+.+.
T Consensus 135 ~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~ 214 (376)
T PRK11097 135 PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLET 214 (376)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999999888887653221 1122223222 2345666778888888888777766555544
Q ss_pred H
Q 027089 183 A 183 (228)
Q Consensus 183 ~ 183 (228)
.
T Consensus 215 a 215 (376)
T PRK11097 215 A 215 (376)
T ss_pred c
Confidence 3
No 54
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=57.34 E-value=61 Score=30.22 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHH----HHhCCCCC--CccccC--hhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027089 107 VTLTLAKAAEVFGEKEFLQAAVDAGEVV----WKRGLLKR--VGICHG--ISGNTYVFLSLYRLTGNVEYLYRAKAFACF 178 (228)
Q Consensus 107 i~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~lCHG--~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~ 178 (228)
.++++...+....|+.+.+.+...++.. +...-... ...-+. .+=.++.++++|+.|+++.|++.|.++.+.
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~ 468 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGEN 468 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777777788888888776655432 00000011 111111 445677889999999999999999999999
Q ss_pred HHHHHhh
Q 027089 179 LYDRAQK 185 (228)
Q Consensus 179 i~~~~~~ 185 (228)
++++.-+
T Consensus 469 l~~~~~~ 475 (557)
T PF06917_consen 469 LFEQHFH 475 (557)
T ss_dssp HHHHHEE
T ss_pred HHHHHcc
Confidence 9887644
No 55
>PLN03012 Camelliol C synthase
Probab=56.29 E-value=1.3e+02 Score=29.75 Aligned_cols=116 Identities=11% Similarity=0.077 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCC--------------CCCcccccccC--chHHHHHHHHHHHhhCc---HHHHHH
Q 027089 66 VEDVKGTLRYMIKNRFPSGNYPSSEGS--------------ESDRLVHWCHG--APGVTLTLAKAAEVFGE---KEFLQA 126 (228)
Q Consensus 66 ~~~~~~~l~~l~~~~~~~g~w~~~~~~--------------~~~~~~~WC~G--~~Gi~~al~~~~~~~~~---~~~~~~ 126 (228)
.+.+.++++|+++.+.++|.|..-..+ -.+....-.+. ++-.+-++..+.+...+ ++....
T Consensus 512 ~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~ 591 (759)
T PLN03012 512 PEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAF 591 (759)
T ss_pred HHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHH
Confidence 578999999999877788887532110 01122233333 33344555555444332 345667
Q ss_pred HHHHHHHHHHhCCC-----CC--CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 027089 127 AVDAGEVVWKRGLL-----KR--VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 184 (228)
Q Consensus 127 ~~~~~~~~~~~~~~-----~~--~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~ 184 (228)
+.++++.+.+.+.. .+ .|+..|++-.+..|..+.+...+... +++..+++++...
T Consensus 592 i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~---Irrav~fLls~Q~ 653 (759)
T PLN03012 592 IKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEA---IRKGVHFLLAAQK 653 (759)
T ss_pred HHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHH---HHHHHHHHHHhcC
Confidence 77888887664321 22 44455666666666555443344343 4445555665543
No 56
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=54.99 E-value=19 Score=33.11 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Q 027089 151 GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQK 185 (228)
Q Consensus 151 G~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~ 185 (228)
=+++.+.++|++|+|++|++.+.++++.+.++.+.
T Consensus 359 E~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~ 393 (452)
T PF01532_consen 359 ETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT 393 (452)
T ss_dssp HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE
T ss_pred hhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999998887654
No 57
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=53.97 E-value=24 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Q 027089 149 ISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQK 185 (228)
Q Consensus 149 ~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~ 185 (228)
..=.++.+..+|++|+|++|++.+.++++.+..+.+.
T Consensus 423 RPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt 459 (522)
T PTZ00470 423 RPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKT 459 (522)
T ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 3446888999999999999999999999988887764
No 58
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=51.55 E-value=2.3e+02 Score=27.31 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHHhcHHhhhcCCCCCc--eeecC-----------ccccccccchHHHHHHHHcccCC-Cc-----hH
Q 027089 6 ISTAQMRAVVDEIIKAGRRLANRGRCPLM--YEWHG-----------KKYWGAAHGLAGIMHVLMDMELK-PD-----EV 66 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~G~aHG~aGi~~~L~~~~~~-~~-----~~ 66 (228)
.+.+-|++.++.|+..+-....+....-. -.|.+ ..........+-++.+|..+... ++ ..
T Consensus 397 ~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~ 476 (634)
T TIGR03463 397 VPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRIT 476 (634)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 55677777888887765443222100000 00000 01233556677777788776542 21 24
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Q 027089 67 EDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 67 ~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
+.++++++|+.+.+.++|.|+...+ ..+.||+.=.+.++... +.+.-.+.++++++.+.+.
T Consensus 477 ~ai~rav~~L~~~Q~~dGsW~g~Wg------~~~~Y~T~~al~aL~~~----G~~~~~~~i~rA~~~Ll~~ 537 (634)
T TIGR03463 477 RAISRGVRFLRSRQREDGSFPGSWG------VCFTYGTFHGVMGLRAA----GASPDDMALQRAAAWLRSY 537 (634)
T ss_pred HHHHHHHHHHHHhcCCCCCccccCC------CCCcHHHHHHHHHHHHc----CCCcCcHHHHHHHHHHHHc
Confidence 5689999999987888999975321 13445543334444332 2211234566666666543
No 59
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.32 E-value=1.7e+02 Score=25.72 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhC-CCCCCccccCh
Q 027089 71 GTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGI 149 (228)
Q Consensus 71 ~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~ 149 (228)
.+..|+...+.++|.+......+.|.+. || ++++.+.+...++ .+..+.+++.+.+-. +....++|-+.
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~--~Y----~al~ilsllg~~~----~~~~e~~vdyl~kCqnyeGGFg~~p~a 199 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRF--LY----IALSILSLLGDLD----KELFEGAVDYLKKCQNYEGGFGLCPYA 199 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHH--HH----HHHHHHHHHhhcc----hhhhHHHHHHHHHhhccCCcccCCCch
Confidence 5667888777778887765544445454 22 2333333332222 223334456665532 22346667554
Q ss_pred ---hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-----CCCccccccchHHHHHHHHHccCC
Q 027089 150 ---SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHG-----GDRPYSLFEGIGGMTHLFLDMIEP 218 (228)
Q Consensus 150 ---aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~g~~~~-----~~~~~gl~~G~aGi~~~Ll~l~~~ 218 (228)
+|.....+..-...+.-+-+...+++...+..+..+ .|++.+ .+.=++|+.+.|=..+.-+.+.++
T Consensus 200 EaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~s---sgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~ 273 (342)
T COG5029 200 EAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLS---SGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINT 273 (342)
T ss_pred hhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccc---cCCcCCCcccCccchhhhhhcchHHhcchhhhcCH
Confidence 455555554444444222222234455556666443 233322 222388998887766655554443
No 60
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=50.49 E-value=1e+02 Score=29.58 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=43.8
Q ss_pred hHHHHHHHHcccCC-Cc----hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHHhhCcHHH
Q 027089 49 LAGIMHVLMDMELK-PD----EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEF 123 (228)
Q Consensus 49 ~aGi~~~L~~~~~~-~~----~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G~~Gi~~al~~~~~~~~~~~~ 123 (228)
.+-++.+|..+... ++ +.+.++++++|+.+.+..+|.|.... ...+++|+.=.+.++..+.... ..
T Consensus 453 Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w------g~~~~Y~T~~al~AL~~~G~~~---~~ 523 (634)
T cd02892 453 TGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW------GVCYIYGTWFALEALAAAGEDY---EN 523 (634)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC------CCccHHHHHHHHHHHHHhCCcc---cC
Confidence 44566666665432 22 24678999999998777788886432 1134455443444444432210 22
Q ss_pred HHHHHHHHHHHHHh
Q 027089 124 LQAAVDAGEVVWKR 137 (228)
Q Consensus 124 ~~~~~~~~~~~~~~ 137 (228)
.+.++++.+.+.+.
T Consensus 524 ~~~i~~a~~~L~s~ 537 (634)
T cd02892 524 SPYIRKACDFLLSK 537 (634)
T ss_pred cHHHHHHHHHHHhc
Confidence 34555666666543
No 61
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=49.65 E-value=1.5e+02 Score=25.65 Aligned_cols=76 Identities=26% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCCccccC------------hhhHHHHHHHH--HHHhCCHHHHHH
Q 027089 107 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVGICHG------------ISGNTYVFLSL--YRLTGNVEYLYR 171 (228)
Q Consensus 107 i~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lCHG------------~aG~~~~ll~l--~~~~~~~~~~~~ 171 (228)
+++++..++. ++++++++.|+.+++.+.+.... .+-++.|= .-..+++++.+ +..++++++++.
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-TTHHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCChhHHHH
Confidence 5666777777 78999999999999888664321 11111110 11223333333 457899999999
Q ss_pred HHHHHHHHHHHH
Q 027089 172 AKAFACFLYDRA 183 (228)
Q Consensus 172 a~~~~~~i~~~~ 183 (228)
|++..+.+.++.
T Consensus 105 A~~~~~~l~~~~ 116 (346)
T PF07221_consen 105 AEQTLEFLERRF 116 (346)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999888887664
No 62
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=46.93 E-value=2.7e+02 Score=26.74 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHcccCCCchHHHHHHHHHHHHHhcC--CCCCCCCCCCCCCCcccccccC-----------chHHHHHHHHHHHhhC
Q 027089 53 MHVLMDMELKPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSESDRLVHWCHG-----------APGVTLTLAKAAEVFG 119 (228)
Q Consensus 53 ~~~L~~~~~~~~~~~~~~~~l~~l~~~~~--~~g~w~~~~~~~~~~~~~WC~G-----------~~Gi~~al~~~~~~~~ 119 (228)
+.+|.......+..+.++++++|+.+.+. ..|.|...... ...-+|... ++-++.+++.+.+..+
T Consensus 315 ~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~--~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~ 392 (634)
T cd02892 315 VQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRH--LRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPP 392 (634)
T ss_pred HHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCC--CCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCC
Confidence 34444443333456778999999988765 34444332110 001122211 2334444444443322
Q ss_pred --cHHHHHHHHHHHHHHHHh
Q 027089 120 --EKEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~ 137 (228)
++...+.++++++.+...
T Consensus 393 ~~~~~~~~~i~~Av~wLl~~ 412 (634)
T cd02892 393 FGEKVSRERLYDAVDWLLGM 412 (634)
T ss_pred cchhhHHHHHHHHHHHHHhc
Confidence 345566777888887653
No 63
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=46.01 E-value=2.8e+02 Score=26.56 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=78.6
Q ss_pred HHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCC-------C-CCCCCCC-CCCcccccc----cCchHHHHHHHHHHH
Q 027089 50 AGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSG-------N-YPSSEGS-ESDRLVHWC----HGAPGVTLTLAKAAE 116 (228)
Q Consensus 50 aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g-------~-w~~~~~~-~~~~~~~WC----~G~~Gi~~al~~~~~ 116 (228)
+|.+-+-..+...+.+.+.+.++.+|+.+..++.+ + +....+. +...+..|. .--+=.+-+++.+++
T Consensus 512 Sgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYe 591 (786)
T KOG2244|consen 512 SGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYE 591 (786)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHH
Confidence 34444433333345677888888888876444322 1 1111111 111223443 334456677888889
Q ss_pred hhCcHHHHHHHHHHHHHH----HHhC--CC---------------CCCccccChhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 027089 117 VFGEKEFLQAAVDAGEVV----WKRG--LL---------------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAF 175 (228)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~----~~~~--~~---------------~~~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~ 175 (228)
..++.++++.|.+.-+.. |+.+ +. .+-.==.|++=.+.=|++++.++..+.|++.|.++
T Consensus 592 a~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~l 671 (786)
T KOG2244|consen 592 AGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRL 671 (786)
T ss_pred ccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 888999998887654332 2210 00 01122346777788889999999999999999887
Q ss_pred HHHHHHH
Q 027089 176 ACFLYDR 182 (228)
Q Consensus 176 ~~~i~~~ 182 (228)
+...-++
T Consensus 672 l~~fseR 678 (786)
T KOG2244|consen 672 LAVFSER 678 (786)
T ss_pred HHHHHHH
Confidence 6665444
No 64
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=45.59 E-value=54 Score=30.07 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhh--CcHHHHHHHHHHHHHHHHh-----CCC-------C-------CCccc-cChhhHHHHHHHHHHHhC
Q 027089 107 VTLTLAKAAEVF--GEKEFLQAAVDAGEVVWKR-----GLL-------K-------RVGIC-HGISGNTYVFLSLYRLTG 164 (228)
Q Consensus 107 i~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~-------~-------~~~lC-HG~aG~~~~ll~l~~~~~ 164 (228)
++=+++-++..+ +|+.+++.|++.++.+... ++. . +..-| +.......=+.++++.|+
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 334445555555 6899999999988886431 110 0 00112 333333444677899999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027089 165 NVEYLYRAKAFACFLYD 181 (228)
Q Consensus 165 ~~~~~~~a~~~~~~i~~ 181 (228)
|++|.+.|.++.+.+.+
T Consensus 162 d~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWR 178 (452)
T ss_dssp -THHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999998877766
No 65
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=44.79 E-value=1.7e+02 Score=23.67 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=66.4
Q ss_pred cccccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHhcCCCCC----------CCCCCCCCCCcccccccCchHHHH
Q 027089 43 WGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGN----------YPSSEGSESDRLVHWCHGAPGVTL 109 (228)
Q Consensus 43 ~G~aHG~aGi~~~L~~~~~~---~~~~~~~~~~l~~l~~~~~~~g~----------w~~~~~~~~~~~~~WC~G~~Gi~~ 109 (228)
.++|-|.+ +.+|.+++.. ..+++.++++++...... +.|. |...-. ..+...--+|.-=.++
T Consensus 28 SamaQG~a--~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~-~~GG~~~~~~~~~~wyeEYp--~~p~s~VLNGfiysL~ 102 (189)
T PF06662_consen 28 SAMAQGQA--ISVLARAYQLTGDEKYLDAAKKALNSFKVPV-EEGGVLATFKNKYPWYEEYP--TTPPSYVLNGFIYSLI 102 (189)
T ss_pred hHHHHHHH--HHHHHHHHHhHCCHHHHHHHHHHHHHhcChH-hhCCeeEEecCCcEeEeecC--CCCCCEEeehHHHHHH
Confidence 35555543 5566677754 335788888887553211 2222 221110 1111122333333333
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHh------CCCCC-----------CccccC--hhhHHHHHHHHHHHhCCHHHHH
Q 027089 110 TLAKAAEVFGEKEFLQAAVDAGEVVWKR------GLLKR-----------VGICHG--ISGNTYVFLSLYRLTGNVEYLY 170 (228)
Q Consensus 110 al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----------~~lCHG--~aG~~~~ll~l~~~~~~~~~~~ 170 (228)
.+......+++++..+.-++.++.+.+. +..+. +.+|-. -.--+..|..++.+|+|+.|.+
T Consensus 103 GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~~ 182 (189)
T PF06662_consen 103 GLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFKE 182 (189)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444444466666666666666555432 21121 233311 2234667888999999999999
Q ss_pred HHHHH
Q 027089 171 RAKAF 175 (228)
Q Consensus 171 ~a~~~ 175 (228)
.++++
T Consensus 183 ~a~rW 187 (189)
T PF06662_consen 183 YAERW 187 (189)
T ss_pred HHHHh
Confidence 98876
No 66
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=13 Score=30.25 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=15.8
Q ss_pred CcccccccCchHHHHHHHHH
Q 027089 95 DRLVHWCHGAPGVTLTLAKA 114 (228)
Q Consensus 95 ~~~~~WC~G~~Gi~~al~~~ 114 (228)
|+.++||+|.+=.+-.+...
T Consensus 9 DPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 9 DPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred CcchhhhhCccHHHHHHHhc
Confidence 56899999998877766654
No 67
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=42.06 E-value=3.3e+02 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=29.4
Q ss_pred hHHHHHHHHcccC--CCchHHHHHHHHHHHHHhcCCCCCCCC
Q 027089 49 LAGIMHVLMDMEL--KPDEVEDVKGTLRYMIKNRFPSGNYPS 88 (228)
Q Consensus 49 ~aGi~~~L~~~~~--~~~~~~~~~~~l~~l~~~~~~~g~w~~ 88 (228)
.+-++.+|..... ...+.+.++++++|+.+.+.++|.|..
T Consensus 383 Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~a 424 (635)
T TIGR01507 383 TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGA 424 (635)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEec
Confidence 5667788777632 122357899999999987888999964
No 68
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.15 E-value=53 Score=19.57 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCCCCCChhHHHHHHHHHHHhcHHhh
Q 027089 1 MGKDTISTAQMRAVVDEIIKAGRRLA 26 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (228)
||-..++.++++++++++-+.-..+.
T Consensus 11 ~G~~ql~ESLLdrItRklr~gwKRl~ 36 (45)
T PF02061_consen 11 MGCPQLSESLLDRITRKLRDGWKRLW 36 (45)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999888766553
No 69
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=36.06 E-value=2.7e+02 Score=23.54 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHHhcHHhhhcCCCCCceeecCcc-ccccccchHHHHHHHHcccCC-CchHHHHHHHHHHHHHhcCCC
Q 027089 6 ISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKK-YWGAAHGLAGIMHVLMDMELK-PDEVEDVKGTLRYMIKNRFPS 83 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~aHG~aGi~~~L~~~~~~-~~~~~~~~~~l~~l~~~~~~~ 83 (228)
++++......+.|.+.-+.+......---|.+.+.. ..+-....+=++.+|...... ....+.+++.++|+.+.+.++
T Consensus 39 ~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d 118 (292)
T cd02897 39 LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN 118 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC
Confidence 344555566666666554444332111224322221 123333444455556555432 223568999999999877788
Q ss_pred CCCCC
Q 027089 84 GNYPS 88 (228)
Q Consensus 84 g~w~~ 88 (228)
|.|..
T Consensus 119 G~f~~ 123 (292)
T cd02897 119 GCFRE 123 (292)
T ss_pred CCCCC
Confidence 88874
No 70
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=31.85 E-value=3.9e+02 Score=24.11 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=31.5
Q ss_pred cChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027089 147 HGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 183 (228)
Q Consensus 147 HG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~ 183 (228)
-|..=+++.|+.+.+.-+++.|.+.+..+++.|+++.
T Consensus 116 DGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~e 152 (376)
T PRK11097 116 DADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREE 152 (376)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhc
Confidence 3555588999999999999999999999988888764
No 71
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=31.79 E-value=58 Score=22.81 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 027089 66 VEDVKGTLRYMIKNRFPSGNY 86 (228)
Q Consensus 66 ~~~~~~~l~~l~~~~~~~g~w 86 (228)
.+.++++++|+.+.+..+|.|
T Consensus 91 ~~~~~~a~~~l~~~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHHHTB-TTSSB
T ss_pred cHHHHHHHHHHHHhcCCCCCC
Confidence 456888999999877777766
No 72
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=31.56 E-value=1.7e+02 Score=25.47 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 68 DVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 68 ~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
..+++++|+.+-+..+|.|......+.+....||
T Consensus 153 ~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~c 186 (316)
T PLN03201 153 NVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFC 186 (316)
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCCCCCccceehH
Confidence 3577889998755567777654333445555565
No 73
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=30.66 E-value=69 Score=30.05 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHHHHcccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 027089 11 MRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 89 (228)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~l~~l~~~~~~~g~w~~~ 89 (228)
|+..++.+++++...+ .++.+.+ .-+-.|.+|.+.++..+.....+...+++++.++...+.++++|-..
T Consensus 354 i~~a~e~LL~~Q~~~G------sW~g~w~---v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~ 423 (517)
T COG1657 354 IERALEWLLSDQEPDG------SWYGRWG---VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEA 423 (517)
T ss_pred ccHHHhhhhhhccccC------ceeeEEE---EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccc
Confidence 5666777777766553 3333222 25667899999999888877666778999999998766677887654
No 74
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=30.53 E-value=3.3e+02 Score=22.86 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHHhcH-HhhhcCCCCCceeecCccccccccchHHHHH--HHHcccCCCchHHHHHHHHHHHHHhcC
Q 027089 5 TISTAQMRAVVDEIIKAGR-RLANRGRCPLMYEWHGKKYWGAAHGLAGIMH--VLMDMELKPDEVEDVKGTLRYMIKNRF 81 (228)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~--~L~~~~~~~~~~~~~~~~l~~l~~~~~ 81 (228)
.+|.+.+++++++|...++ .. ..|... ..+-+|..+-... +|..+..........+++++|+.+.+.
T Consensus 43 ~~~~~~~~~~i~~l~~~q~~~~-------Ggf~~~---~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~ 112 (286)
T cd02890 43 DLDDENKDEIIDFIYSCQVNED-------GGFGGG---PGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQN 112 (286)
T ss_pred CcchHHHHHHHHHHHHhhcCCC-------CCCCCC---CCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcC
Confidence 4678888999999888762 21 122111 1234444332222 222222210112335678899987666
Q ss_pred CCCCCCCCCCCCCCcccccc
Q 027089 82 PSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 82 ~~g~w~~~~~~~~~~~~~WC 101 (228)
++|.|......+.+.+..+|
T Consensus 113 ~dGgf~~~~~~~~d~~~ty~ 132 (286)
T cd02890 113 PDGSFRGDLGGEVDTRFVYC 132 (286)
T ss_pred CCCCcccCCCCCchHHHHHH
Confidence 77887543322334344444
No 75
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=30.51 E-value=2.3e+02 Score=26.95 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=45.6
Q ss_pred HHHHhhCcHHHHHHHHHHHHHHHHh----------------CCCCCCccccChhhHH-------HHHHHHHHHhCCHHHH
Q 027089 113 KAAEVFGEKEFLQAAVDAGEVVWKR----------------GLLKRVGICHGISGNT-------YVFLSLYRLTGNVEYL 169 (228)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~lCHG~aG~~-------~~ll~l~~~~~~~~~~ 169 (228)
.++..++++-+++.+....+.++.. +-..|.+|..|.+.++ .-++.+.+.++++.|.
T Consensus 273 say~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~~~ 352 (625)
T KOG2204|consen 273 SAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPTFA 352 (625)
T ss_pred HHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCchHH
Confidence 3444566888888887777666421 1124688888866644 2367788999999999
Q ss_pred HHHHHHHHHH
Q 027089 170 YRAKAFACFL 179 (228)
Q Consensus 170 ~~a~~~~~~i 179 (228)
+...++...+
T Consensus 353 ekv~~IRk~l 362 (625)
T KOG2204|consen 353 EKVVKIRKVL 362 (625)
T ss_pred HHHHHHHHHH
Confidence 9888765444
No 76
>PLN02710 farnesyltranstransferase subunit beta
Probab=29.79 E-value=4.5e+02 Score=24.23 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=41.3
Q ss_pred CChhHHHHHHHHHHHhcHHhhhcCCCCCceeecCccccccccchHHHHHH--HHcccCCCchHH--HHHHHHHHHHHhcC
Q 027089 6 ISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHV--LMDMELKPDEVE--DVKGTLRYMIKNRF 81 (228)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~--L~~~~~~~~~~~--~~~~~l~~l~~~~~ 81 (228)
++.+.-+.++++|.+++.... . |.+.. -..+|-.+-+... |..+... +..+ ...++++|+.+.+.
T Consensus 89 l~~~~~~~ii~~l~~cQ~~dG-------G--Fgg~p-g~~~hl~~TY~Av~~L~iLg~~-~~l~~Idr~~l~~fl~s~q~ 157 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPNG-------G--YGGGP-GQLPHLATTYAAVNTLVTIGGE-RALSSINREKLYTFLLRMKD 157 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCCc-------C--CCCCC-CCCccHHHHHHHHHHHHHcCCc-hhhcccCHHHHHHHHHHcCC
Confidence 566666778888887754221 1 11110 1244544333332 2222211 1111 13567788877555
Q ss_pred CCCCCCCCCCCCCCcccccc
Q 027089 82 PSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 82 ~~g~w~~~~~~~~~~~~~WC 101 (228)
.+|.+......+.+.+..+|
T Consensus 158 ~dGgF~~~~~gE~D~R~tYc 177 (439)
T PLN02710 158 PSGGFRMHDGGEMDVRACYT 177 (439)
T ss_pred CCCCcccCCCCCCCcCCcHH
Confidence 67776554334455555555
No 77
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=29.25 E-value=2.4e+02 Score=23.97 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 69 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 69 ~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
..++.+|+.+.+..+|.+....+...|...+||
T Consensus 198 ~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~ 230 (287)
T cd02894 198 RDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWW 230 (287)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhH
Confidence 667788988766666766443322334444554
No 78
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=28.44 E-value=2.1e+02 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 68 DVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 68 ~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
...++++|+.+.+..+|.+......+.+....||
T Consensus 147 ~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfc 180 (299)
T cd02893 147 LFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFC 180 (299)
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHH
Confidence 4678889998755556665432223445556676
No 79
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=25.35 E-value=6.2e+02 Score=24.37 Aligned_cols=75 Identities=5% Similarity=0.057 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhcHHhhh--------cCCCCCceeecCccccccccch------HHHHHHHHcccC--CCchHHHHHHH
Q 027089 9 AQMRAVVDEIIKAGRRLAN--------RGRCPLMYEWHGKKYWGAAHGL------AGIMHVLMDMEL--KPDEVEDVKGT 72 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~G~aHG~------aGi~~~L~~~~~--~~~~~~~~~~~ 72 (228)
..|.+..+.+.+.+....- ...+|-.|.|.. ..||. ++++.++..+.. .....+.++++
T Consensus 319 ~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~-----~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a 393 (621)
T TIGR01787 319 PALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSF-----LNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDA 393 (621)
T ss_pred HHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCcc-----CCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 3677777888777654310 011223333221 12443 445544433322 22235778999
Q ss_pred HHHHHHhcCCCCCCCC
Q 027089 73 LRYMIKNRFPSGNYPS 88 (228)
Q Consensus 73 l~~l~~~~~~~g~w~~ 88 (228)
++|+.+.+.++|.|..
T Consensus 394 ~~~Ll~~Qn~dGGw~a 409 (621)
T TIGR01787 394 VNWILGMQSSNGGFAA 409 (621)
T ss_pred HHHHHHHcCCCCCEee
Confidence 9999988888999873
No 80
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=23.79 E-value=3.2e+02 Score=25.20 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=34.7
Q ss_pred CccccChhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 027089 143 VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 184 (228)
Q Consensus 143 ~~lCHG~aG~~~~ll~l~~~~~~~~~~~~a~~~~~~i~~~~~ 184 (228)
..+.-=..=++-=++.+|..++++-|++.|..+.+.++...+
T Consensus 171 VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~ 212 (546)
T KOG2431|consen 171 VNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFS 212 (546)
T ss_pred eehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhc
Confidence 555555666777788999999999999999999999888763
No 81
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=23.37 E-value=3e+02 Score=22.72 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHcccCCCc-hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccC--chHH------HHHHHHHHHhhC--c
Q 027089 52 IMHVLMDMELKPD-EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHG--APGV------TLTLAKAAEVFG--E 120 (228)
Q Consensus 52 i~~~L~~~~~~~~-~~~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC~G--~~Gi------~~al~~~~~~~~--~ 120 (228)
++-+|....+... ..+.+.+.++|+.+++.++|.|.+... .....-.| ...+ ++++++.....+ .
T Consensus 33 v~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~----~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~ 108 (246)
T PF07678_consen 33 VVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGP----VIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEK 108 (246)
T ss_dssp HHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-----SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCC----ccccccCCCCCCCeeehHHHHHHHHhhhhhccccc
Confidence 3344444444322 356789999999988778888865321 11111111 1222 333333332221 3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027089 121 KEFLQAAVDAGEVVWKR 137 (228)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (228)
+.....+.++++++.+.
T Consensus 109 ~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 109 PEYENAINKALNYLERH 125 (246)
T ss_dssp HCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 56677777888777654
No 82
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=21.42 E-value=2.3e+02 Score=25.83 Aligned_cols=95 Identities=18% Similarity=0.309 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCC----C-CCCcccccccCch-HHH-HHHHHHHHhhCcHHHHHHHHHHHHHH----
Q 027089 66 VEDVKGTLRYMIKNRFPSGNYPSSEG----S-ESDRLVHWCHGAP-GVT-LTLAKAAEVFGEKEFLQAAVDAGEVV---- 134 (228)
Q Consensus 66 ~~~~~~~l~~l~~~~~~~g~w~~~~~----~-~~~~~~~WC~G~~-Gi~-~al~~~~~~~~~~~~~~~~~~~~~~~---- 134 (228)
......+.+|+.+++.+.|.|+-... + ...-..+|-.-++ |-+ -.+.+++..++|++++..|.++++-.
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~~S 458 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKINS 458 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEeec
Confidence 45567788999998888899985431 1 1233567843322 222 23455677789999998887765321
Q ss_pred --------------HHhCCC-CCCccccChhhHHHHHHHHHHH
Q 027089 135 --------------WKRGLL-KRVGICHGISGNTYVFLSLYRL 162 (228)
Q Consensus 135 --------------~~~~~~-~~~~lCHG~aG~~~~ll~l~~~ 162 (228)
|-..+. ...++- .-|.++.|+-+|..
T Consensus 459 ~dgGV~a~Fm~K~~WYEEYPTTP~SfV--LNGF~YSLiGLYDL 499 (594)
T KOG3760|consen 459 SDGGVRAEFMGKNIWYEEYPTTPGSFV--LNGFLYSLIGLYDL 499 (594)
T ss_pred CCCceEEEEccccchhhhcCCCCccee--ehhHHHHhhhhhcc
Confidence 111111 122332 45788888888876
No 83
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=20.46 E-value=2.6e+02 Score=24.15 Aligned_cols=35 Identities=6% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q 027089 67 EDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 101 (228)
Q Consensus 67 ~~~~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~WC 101 (228)
...+++++|+.+.+...|.+....+...|...+||
T Consensus 216 ~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw 250 (307)
T cd02895 216 KFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFW 250 (307)
T ss_pred ccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhH
Confidence 34677889998766656666543333445567777
No 84
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=20.46 E-value=1e+02 Score=21.20 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.3
Q ss_pred CCCChhHHHHHHHHHHHhcH
Q 027089 4 DTISTAQMRAVVDEIIKAGR 23 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (228)
-.+|+++.+++|++|++.+.
T Consensus 46 ~~Vs~~~ed~IV~~I~~~~~ 65 (79)
T PF14069_consen 46 KPVSKEQEDQIVQAIINQKI 65 (79)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 46899999999999999854
Done!