Query 027090
Match_columns 228
No_of_seqs 127 out of 1884
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1.2E-32 2.6E-37 210.9 18.1 203 20-226 1-203 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 3.1E-31 6.7E-36 201.2 23.0 196 20-221 1-196 (196)
3 COG1159 Era GTPase [General fu 99.9 4.6E-24 9.9E-29 165.1 15.3 176 20-222 7-183 (298)
4 TIGR00436 era GTP-binding prot 99.9 9.9E-21 2.1E-25 150.3 15.5 165 21-211 2-166 (270)
5 TIGR00991 3a0901s02IAP34 GTP-b 99.8 8.8E-20 1.9E-24 144.2 17.2 200 14-218 33-253 (313)
6 PF02421 FeoB_N: Ferrous iron 99.8 6.2E-21 1.4E-25 137.4 9.4 155 20-204 1-156 (156)
7 PRK00089 era GTPase Era; Revie 99.8 9.2E-20 2E-24 146.5 15.5 169 19-212 5-174 (292)
8 TIGR00993 3a0901s04IAP86 chlor 99.8 1.3E-18 2.7E-23 148.2 19.4 163 18-184 117-287 (763)
9 COG0218 Predicted GTPase [Gene 99.8 2.8E-18 6E-23 126.4 17.4 174 15-210 20-198 (200)
10 COG1160 Predicted GTPases [Gen 99.8 5.1E-19 1.1E-23 144.4 14.8 162 20-209 4-165 (444)
11 PRK15494 era GTPase Era; Provi 99.8 9.4E-19 2E-23 142.8 15.3 172 20-219 53-224 (339)
12 PRK12298 obgE GTPase CgtA; Rev 99.8 2.4E-18 5.2E-23 142.3 16.7 170 21-211 161-335 (390)
13 cd01853 Toc34_like Toc34-like 99.8 5.3E-18 1.1E-22 132.3 15.8 134 16-152 28-164 (249)
14 COG1160 Predicted GTPases [Gen 99.8 2.1E-18 4.5E-23 140.9 13.0 178 18-213 177-355 (444)
15 cd01898 Obg Obg subfamily. Th 99.8 1.3E-17 2.9E-22 123.3 14.2 164 21-207 2-169 (170)
16 COG1084 Predicted GTPase [Gene 99.8 4.6E-17 1E-21 127.6 17.0 138 11-159 160-300 (346)
17 PRK12299 obgE GTPase CgtA; Rev 99.8 6.4E-17 1.4E-21 131.4 18.3 168 21-211 160-330 (335)
18 cd01897 NOG NOG1 is a nucleola 99.8 5.4E-17 1.2E-21 119.9 15.4 163 21-208 2-167 (168)
19 cd04163 Era Era subfamily. Er 99.8 3.9E-17 8.5E-22 119.9 14.4 163 20-207 4-167 (168)
20 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.2E-17 1.1E-21 118.3 14.6 156 19-208 1-156 (157)
21 PF01926 MMR_HSR1: 50S ribosom 99.8 3.5E-17 7.6E-22 113.7 12.6 116 21-146 1-116 (116)
22 cd04171 SelB SelB subfamily. 99.7 8.1E-17 1.8E-21 118.3 14.9 161 21-206 2-163 (164)
23 TIGR02729 Obg_CgtA Obg family 99.7 8.5E-17 1.9E-21 130.5 16.1 166 20-208 158-328 (329)
24 PRK00093 GTP-binding protein D 99.7 1.5E-16 3.2E-21 134.8 18.2 173 18-210 172-345 (435)
25 cd01894 EngA1 EngA1 subfamily. 99.7 4.8E-17 1E-21 118.6 13.3 156 23-207 1-156 (157)
26 PRK00454 engB GTP-binding prot 99.7 6.2E-16 1.3E-20 117.1 19.8 170 18-210 23-195 (196)
27 TIGR03594 GTPase_EngA ribosome 99.7 2.1E-16 4.6E-21 133.6 18.8 174 18-210 171-345 (429)
28 cd01895 EngA2 EngA2 subfamily. 99.7 2.2E-16 4.8E-21 116.8 16.1 171 19-207 2-173 (174)
29 cd01878 HflX HflX subfamily. 99.7 1.7E-16 3.7E-21 121.1 15.4 163 18-207 40-203 (204)
30 COG3596 Predicted GTPase [Gene 99.7 2.6E-17 5.7E-22 126.1 10.2 182 18-216 38-229 (296)
31 COG0486 ThdF Predicted GTPase 99.7 1.6E-16 3.4E-21 130.3 14.9 167 14-211 212-378 (454)
32 PF00009 GTP_EFTU: Elongation 99.7 2.8E-17 6.1E-22 123.8 9.6 168 18-209 2-187 (188)
33 PRK12297 obgE GTPase CgtA; Rev 99.7 4.5E-16 9.8E-21 129.5 17.4 166 21-212 160-330 (424)
34 PRK03003 GTP-binding protein D 99.7 7.2E-16 1.6E-20 131.4 18.9 174 18-212 210-385 (472)
35 TIGR03598 GTPase_YsxC ribosome 99.7 4.1E-16 8.8E-21 116.6 15.2 136 15-163 14-153 (179)
36 cd01888 eIF2_gamma eIF2-gamma 99.7 1.9E-16 4.1E-21 120.7 13.3 165 21-210 2-200 (203)
37 cd04134 Rho3 Rho3 subfamily. 99.7 1.6E-16 3.5E-21 119.8 12.3 169 20-210 1-175 (189)
38 TIGR03594 GTPase_EngA ribosome 99.7 4E-16 8.6E-21 132.0 16.1 162 21-211 1-162 (429)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 6.1E-16 1.3E-20 114.1 15.0 163 21-209 2-166 (168)
40 cd04112 Rab26 Rab26 subfamily. 99.7 1.1E-15 2.5E-20 115.3 16.6 163 21-214 2-168 (191)
41 PRK12296 obgE GTPase CgtA; Rev 99.7 1.4E-15 3E-20 128.3 18.6 169 20-211 160-342 (500)
42 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.1E-16 1.1E-20 114.4 14.2 160 22-205 2-162 (164)
43 TIGR03156 GTP_HflX GTP-binding 99.7 7.4E-16 1.6E-20 126.1 16.4 161 19-207 189-350 (351)
44 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5.1E-16 1.1E-20 113.7 14.0 156 20-207 2-160 (162)
45 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2E-15 4.4E-20 112.1 17.3 160 20-210 3-165 (172)
46 PRK04213 GTP-binding protein; 99.7 1.3E-15 2.8E-20 116.0 16.5 173 18-213 8-196 (201)
47 cd01864 Rab19 Rab19 subfamily. 99.7 4.8E-16 1E-20 114.6 13.3 159 19-207 3-164 (165)
48 PRK03003 GTP-binding protein D 99.7 7.8E-16 1.7E-20 131.2 16.2 164 18-210 37-200 (472)
49 cd00881 GTP_translation_factor 99.7 5.8E-16 1.3E-20 116.4 13.5 165 21-209 1-187 (189)
50 cd04124 RabL2 RabL2 subfamily. 99.7 6.4E-16 1.4E-20 113.5 13.4 154 21-210 2-159 (161)
51 cd04104 p47_IIGP_like p47 (47- 99.7 2.5E-15 5.5E-20 113.9 17.1 173 20-212 2-187 (197)
52 cd04120 Rab12 Rab12 subfamily. 99.7 2.4E-15 5.2E-20 114.2 16.7 158 21-210 2-164 (202)
53 cd04121 Rab40 Rab40 subfamily. 99.7 1.4E-15 3.1E-20 114.4 15.2 163 19-213 6-171 (189)
54 cd04160 Arfrp1 Arfrp1 subfamil 99.7 8.8E-16 1.9E-20 113.3 13.7 163 21-206 1-166 (167)
55 cd04119 RJL RJL (RabJ-Like) su 99.7 1.5E-15 3.3E-20 111.9 14.9 158 21-208 2-166 (168)
56 PRK00093 GTP-binding protein D 99.7 1.4E-15 3E-20 128.9 16.6 159 20-207 2-160 (435)
57 cd01881 Obg_like The Obg-like 99.7 1.1E-15 2.4E-20 113.6 14.2 162 24-207 1-175 (176)
58 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.7E-15 5.9E-20 111.7 16.2 163 20-207 2-173 (175)
59 cd04144 Ras2 Ras2 subfamily. 99.7 1.4E-15 3E-20 114.8 14.8 163 21-213 1-167 (190)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.6E-15 3.5E-20 111.5 14.8 158 20-208 3-163 (164)
61 PRK09518 bifunctional cytidyla 99.7 3.1E-15 6.8E-20 133.2 19.2 173 18-211 449-623 (712)
62 cd04158 ARD1 ARD1 subfamily. 99.7 1.6E-15 3.5E-20 112.3 14.6 161 21-211 1-163 (169)
63 PRK05291 trmE tRNA modificatio 99.7 1.1E-15 2.3E-20 129.3 15.2 158 18-210 214-371 (449)
64 cd04136 Rap_like Rap-like subf 99.7 1.3E-15 2.7E-20 111.9 13.5 157 20-207 2-161 (163)
65 cd01865 Rab3 Rab3 subfamily. 99.7 7E-15 1.5E-19 108.4 17.5 159 20-210 2-164 (165)
66 cd01868 Rab11_like Rab11-like. 99.7 1.8E-15 3.9E-20 111.4 14.4 157 20-207 4-163 (165)
67 cd04132 Rho4_like Rho4-like su 99.7 1.8E-15 3.8E-20 113.9 14.5 164 20-211 1-169 (187)
68 cd04122 Rab14 Rab14 subfamily. 99.7 1.6E-15 3.4E-20 112.0 14.0 157 20-208 3-163 (166)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1E-15 2.3E-20 112.8 12.9 159 20-209 3-164 (166)
70 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.9E-15 1.1E-19 109.8 16.5 162 21-211 2-167 (170)
71 cd01866 Rab2 Rab2 subfamily. 99.7 3.2E-15 7E-20 110.5 15.5 161 20-210 5-167 (168)
72 cd01876 YihA_EngB The YihA (En 99.7 5.2E-15 1.1E-19 108.9 16.6 164 22-207 2-169 (170)
73 cd01893 Miro1 Miro1 subfamily. 99.7 2E-15 4.3E-20 111.5 14.3 160 21-209 2-164 (166)
74 smart00173 RAS Ras subfamily o 99.7 1.6E-15 3.4E-20 111.6 13.7 158 21-209 2-162 (164)
75 smart00174 RHO Rho (Ras homolo 99.7 5.4E-16 1.2E-20 115.2 11.3 162 22-208 1-171 (174)
76 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 7.2E-15 1.5E-19 113.6 17.8 179 12-211 6-190 (232)
77 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.5E-15 5.4E-20 112.7 14.8 164 20-210 4-171 (183)
78 cd04142 RRP22 RRP22 subfamily. 99.7 7.2E-15 1.6E-19 111.5 17.4 173 21-214 2-179 (198)
79 cd04140 ARHI_like ARHI subfami 99.7 2E-15 4.3E-20 111.3 13.8 158 20-207 2-163 (165)
80 PRK15467 ethanolamine utilizat 99.7 2.2E-16 4.7E-21 115.6 8.5 148 20-211 2-149 (158)
81 cd01867 Rab8_Rab10_Rab13_like 99.7 4.3E-15 9.2E-20 109.8 15.5 159 20-209 4-165 (167)
82 cd04109 Rab28 Rab28 subfamily. 99.7 6.8E-15 1.5E-19 113.2 17.1 161 21-211 2-168 (215)
83 COG0370 FeoB Fe2+ transport sy 99.7 9.8E-16 2.1E-20 130.7 13.5 165 19-213 3-168 (653)
84 cd01884 EF_Tu EF-Tu subfamily. 99.7 3.3E-15 7.1E-20 112.8 14.8 117 20-152 3-133 (195)
85 cd04127 Rab27A Rab27a subfamil 99.7 2.5E-15 5.4E-20 112.3 14.1 162 20-210 5-178 (180)
86 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 7.9E-15 1.7E-19 109.7 16.7 169 18-207 4-178 (182)
87 cd04175 Rap1 Rap1 subgroup. T 99.7 3.8E-15 8.3E-20 109.6 14.6 158 20-208 2-162 (164)
88 cd01879 FeoB Ferrous iron tran 99.7 2E-15 4.4E-20 110.2 13.0 156 24-208 1-156 (158)
89 cd04157 Arl6 Arl6 subfamily. 99.7 2.1E-15 4.6E-20 110.6 13.1 156 21-206 1-161 (162)
90 cd01875 RhoG RhoG subfamily. 99.7 8.2E-15 1.8E-19 110.7 16.6 169 20-210 4-178 (191)
91 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-14 2.4E-19 115.6 18.0 145 19-177 4-176 (276)
92 smart00175 RAB Rab subfamily o 99.7 1.4E-14 3E-19 106.4 17.3 160 20-210 1-163 (164)
93 cd04154 Arl2 Arl2 subfamily. 99.7 3.6E-15 7.8E-20 110.8 14.2 158 16-205 11-171 (173)
94 cd04113 Rab4 Rab4 subfamily. 99.7 1.4E-15 3.1E-20 111.5 11.8 156 21-206 2-159 (161)
95 cd04159 Arl10_like Arl10-like 99.7 1.8E-15 3.9E-20 110.2 12.3 156 22-206 2-158 (159)
96 cd01861 Rab6 Rab6 subfamily. 99.7 7.7E-15 1.7E-19 107.5 15.7 155 21-207 2-160 (161)
97 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.6E-15 7.7E-20 109.7 13.9 158 20-208 1-163 (164)
98 cd01870 RhoA_like RhoA-like su 99.7 1.7E-15 3.8E-20 112.6 12.2 164 20-208 2-174 (175)
99 cd01889 SelB_euk SelB subfamil 99.7 2.3E-15 5.1E-20 113.7 13.1 169 20-210 1-187 (192)
100 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.9E-15 4.2E-20 115.0 12.6 162 21-211 2-170 (201)
101 cd01860 Rab5_related Rab5-rela 99.7 2.7E-15 5.8E-20 110.2 12.9 159 20-208 2-162 (163)
102 PRK09518 bifunctional cytidyla 99.7 6.7E-15 1.5E-19 131.1 17.5 163 19-210 275-437 (712)
103 PLN03071 GTP-binding nuclear p 99.7 7.8E-15 1.7E-19 113.1 15.6 160 17-211 11-174 (219)
104 cd04155 Arl3 Arl3 subfamily. 99.7 4.9E-15 1.1E-19 110.0 13.9 160 17-206 12-172 (173)
105 cd04133 Rop_like Rop subfamily 99.7 6.5E-15 1.4E-19 109.6 14.5 164 20-208 2-172 (176)
106 cd04135 Tc10 TC10 subfamily. 99.7 1.7E-15 3.7E-20 112.5 11.4 162 21-207 2-172 (174)
107 TIGR00450 mnmE_trmE_thdF tRNA 99.7 9.3E-15 2E-19 123.0 17.1 124 17-151 201-324 (442)
108 cd04131 Rnd Rnd subfamily. Th 99.7 1.9E-14 4.2E-19 107.4 16.8 167 20-207 2-174 (178)
109 KOG1423 Ras-like GTPase ERA [C 99.6 3.6E-15 7.7E-20 115.8 13.1 190 16-212 69-274 (379)
110 cd04149 Arf6 Arf6 subfamily. 99.6 9.9E-15 2.1E-19 108.0 15.0 157 18-206 8-167 (168)
111 PRK09554 feoB ferrous iron tra 99.6 5.6E-15 1.2E-19 131.5 15.9 164 19-209 3-168 (772)
112 cd04123 Rab21 Rab21 subfamily. 99.6 1.3E-14 2.9E-19 106.2 15.4 157 21-208 2-161 (162)
113 cd00877 Ran Ran (Ras-related n 99.6 3.4E-15 7.3E-20 110.3 12.2 155 21-210 2-160 (166)
114 cd04117 Rab15 Rab15 subfamily. 99.6 1.1E-14 2.5E-19 106.9 15.0 154 21-207 2-160 (161)
115 PF10662 PduV-EutP: Ethanolami 99.6 1.7E-15 3.6E-20 107.0 9.9 141 20-205 2-142 (143)
116 PLN00223 ADP-ribosylation fact 99.6 2.2E-14 4.7E-19 107.4 16.6 160 17-210 15-179 (181)
117 smart00177 ARF ARF-like small 99.6 1.4E-14 3E-19 107.9 15.4 161 18-208 12-173 (175)
118 cd04139 RalA_RalB RalA/RalB su 99.6 1.1E-14 2.4E-19 106.8 14.7 159 20-209 1-162 (164)
119 PTZ00133 ADP-ribosylation fact 99.6 9.4E-15 2E-19 109.5 14.5 162 17-210 15-179 (182)
120 PRK10512 selenocysteinyl-tRNA- 99.6 1.1E-14 2.4E-19 127.0 16.9 166 21-211 2-168 (614)
121 PRK11058 GTPase HflX; Provisio 99.6 1.2E-14 2.7E-19 121.6 16.6 165 20-210 198-363 (426)
122 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.1E-14 2.3E-19 106.8 14.4 154 21-205 2-157 (159)
123 cd04114 Rab30 Rab30 subfamily. 99.6 1.7E-14 3.6E-19 106.7 15.4 158 19-207 7-167 (169)
124 cd01863 Rab18 Rab18 subfamily. 99.6 6.6E-15 1.4E-19 107.9 13.2 158 20-207 1-160 (161)
125 PTZ00369 Ras-like protein; Pro 99.6 1.6E-14 3.6E-19 108.8 15.6 161 19-210 5-168 (189)
126 cd01871 Rac1_like Rac1-like su 99.6 2.4E-14 5.2E-19 106.5 16.3 163 20-206 2-172 (174)
127 cd04156 ARLTS1 ARLTS1 subfamil 99.6 7.4E-15 1.6E-19 107.6 13.3 158 21-206 1-159 (160)
128 KOG0084 GTPase Rab1/YPT1, smal 99.6 1.3E-14 2.8E-19 105.8 14.1 166 20-215 10-178 (205)
129 COG1131 CcmA ABC-type multidru 99.6 2.9E-16 6.3E-21 125.7 6.1 167 14-190 26-218 (293)
130 TIGR02528 EutP ethanolamine ut 99.6 2.5E-15 5.4E-20 108.0 10.4 140 21-205 2-141 (142)
131 cd01890 LepA LepA subfamily. 99.6 4.8E-15 1E-19 110.6 12.3 160 20-209 1-177 (179)
132 cd01862 Rab7 Rab7 subfamily. 99.6 2.4E-14 5.3E-19 106.0 15.9 162 21-211 2-169 (172)
133 cd04111 Rab39 Rab39 subfamily. 99.6 2.6E-14 5.6E-19 109.6 16.2 163 20-211 3-168 (211)
134 PLN03118 Rab family protein; P 99.6 3.9E-14 8.4E-19 108.7 17.2 167 14-211 9-179 (211)
135 cd04106 Rab23_lke Rab23-like s 99.6 4.4E-14 9.6E-19 103.6 16.8 153 21-206 2-160 (162)
136 cd04151 Arl1 Arl1 subfamily. 99.6 6.5E-15 1.4E-19 107.8 12.3 155 21-206 1-157 (158)
137 cd00880 Era_like Era (E. coli 99.6 2.3E-14 5E-19 104.1 15.2 162 24-207 1-162 (163)
138 cd01896 DRG The developmentall 99.6 2.9E-14 6.2E-19 110.7 16.4 87 21-114 2-88 (233)
139 cd04115 Rab33B_Rab33A Rab33B/R 99.6 4.6E-14 9.9E-19 104.6 16.7 157 20-208 3-168 (170)
140 PLN03110 Rab GTPase; Provision 99.6 8.6E-14 1.9E-18 107.1 18.8 161 18-210 11-175 (216)
141 cd00154 Rab Rab family. Rab G 99.6 3.9E-14 8.4E-19 103.0 16.1 153 21-205 2-158 (159)
142 cd04125 RabA_like RabA-like su 99.6 4.2E-14 9.2E-19 106.5 16.7 161 21-211 2-164 (188)
143 cd04176 Rap2 Rap2 subgroup. T 99.6 1.5E-14 3.2E-19 106.3 13.8 156 20-207 2-161 (163)
144 cd04118 Rab24 Rab24 subfamily. 99.6 1.7E-14 3.7E-19 109.0 14.5 162 21-210 2-167 (193)
145 cd04128 Spg1 Spg1p. Spg1p (se 99.6 3.6E-14 7.7E-19 106.3 15.8 160 21-210 2-167 (182)
146 cd00879 Sar1 Sar1 subfamily. 99.6 2.1E-14 4.5E-19 108.3 14.7 170 18-207 18-189 (190)
147 cd01891 TypA_BipA TypA (tyrosi 99.6 4E-14 8.6E-19 107.2 16.2 116 20-152 3-132 (194)
148 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.1E-14 4.5E-19 106.1 14.3 159 21-206 1-166 (167)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1E-14 2.2E-19 108.6 12.6 156 19-205 15-172 (174)
150 cd00876 Ras Ras family. The R 99.6 1.6E-14 3.5E-19 105.5 13.5 155 21-207 1-159 (160)
151 cd04137 RheB Rheb (Ras Homolog 99.6 2.6E-14 5.6E-19 106.8 14.7 163 20-213 2-167 (180)
152 cd04110 Rab35 Rab35 subfamily. 99.6 6E-14 1.3E-18 106.6 16.9 160 19-211 6-169 (199)
153 cd04116 Rab9 Rab9 subfamily. 99.6 4.6E-14 1E-18 104.4 15.6 161 18-206 4-168 (170)
154 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.3E-13 2.8E-18 106.1 18.5 166 20-210 2-177 (222)
155 cd04147 Ras_dva Ras-dva subfam 99.6 5.1E-14 1.1E-18 106.9 16.1 160 21-210 1-164 (198)
156 smart00178 SAR Sar1p-like memb 99.6 2.6E-14 5.6E-19 107.3 14.3 166 17-206 15-182 (184)
157 PLN03108 Rab family protein; P 99.6 3.7E-14 8.1E-19 108.6 15.0 161 19-210 6-169 (210)
158 cd04126 Rab20 Rab20 subfamily. 99.6 1.5E-14 3.3E-19 111.1 12.6 112 21-151 2-114 (220)
159 cd04177 RSR1 RSR1 subgroup. R 99.6 5.8E-14 1.3E-18 103.8 15.3 161 20-210 2-165 (168)
160 cd04130 Wrch_1 Wrch-1 subfamil 99.6 9.5E-15 2.1E-19 108.5 11.1 164 20-205 1-170 (173)
161 cd04146 RERG_RasL11_like RERG/ 99.6 3.2E-14 7E-19 104.8 13.8 160 21-209 1-164 (165)
162 COG0536 Obg Predicted GTPase [ 99.6 3.3E-14 7.2E-19 112.2 14.4 171 21-212 161-336 (369)
163 PF00735 Septin: Septin; Inte 99.6 2.6E-14 5.6E-19 113.5 13.9 149 20-182 5-180 (281)
164 cd04148 RGK RGK subfamily. Th 99.6 5.1E-14 1.1E-18 108.7 15.2 158 21-210 2-164 (221)
165 TIGR00475 selB selenocysteine- 99.6 5.6E-14 1.2E-18 122.2 17.1 166 21-211 2-168 (581)
166 KOG1489 Predicted GTP-binding 99.6 2.1E-14 4.6E-19 112.0 12.9 162 21-206 198-364 (366)
167 cd00157 Rho Rho (Ras homology) 99.6 1.2E-14 2.6E-19 107.5 11.2 162 20-206 1-170 (171)
168 COG1120 FepC ABC-type cobalami 99.6 5.6E-15 1.2E-19 114.3 9.6 167 14-189 23-219 (258)
169 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.9E-14 4.1E-19 105.2 11.8 156 21-206 1-157 (158)
170 cd04143 Rhes_like Rhes_like su 99.6 2.8E-14 6.1E-19 111.7 13.4 161 21-210 2-172 (247)
171 cd04129 Rho2 Rho2 subfamily. 99.6 1.8E-14 3.9E-19 108.4 11.8 167 20-210 2-174 (187)
172 cd04166 CysN_ATPS CysN_ATPS su 99.6 2.6E-14 5.7E-19 109.3 12.7 115 21-151 1-144 (208)
173 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 6.2E-14 1.4E-18 102.0 13.8 161 20-211 23-187 (221)
174 COG2262 HflX GTPases [General 99.6 7.7E-14 1.7E-18 112.8 14.7 165 18-211 191-358 (411)
175 TIGR00487 IF-2 translation ini 99.6 1.7E-13 3.7E-18 118.8 17.1 162 18-206 86-247 (587)
176 KOG0092 GTPase Rab5/YPT51 and 99.6 2.8E-14 6E-19 103.7 9.8 161 19-212 5-170 (200)
177 CHL00071 tufA elongation facto 99.6 1.6E-13 3.5E-18 115.0 15.8 139 16-176 9-161 (409)
178 CHL00189 infB translation init 99.6 1.5E-13 3.2E-18 121.1 15.9 165 17-208 242-409 (742)
179 cd04102 RabL3 RabL3 (Rab-like3 99.6 8.5E-13 1.8E-17 100.2 17.8 117 21-152 2-144 (202)
180 PRK12735 elongation factor Tu; 99.6 2.2E-13 4.7E-18 113.8 15.9 167 17-209 10-203 (396)
181 cd01892 Miro2 Miro2 subfamily. 99.6 1.6E-13 3.5E-18 101.6 13.3 160 18-209 3-166 (169)
182 KOG0078 GTP-binding protein SE 99.6 1.9E-13 4E-18 101.1 13.3 161 18-210 11-175 (207)
183 PRK12736 elongation factor Tu; 99.5 3.1E-13 6.8E-18 112.8 16.4 172 16-210 9-202 (394)
184 PF00025 Arf: ADP-ribosylation 99.5 6.7E-14 1.5E-18 104.2 11.0 161 17-207 12-174 (175)
185 COG4555 NatA ABC-type Na+ tran 99.5 2.2E-15 4.8E-20 110.7 2.9 170 12-190 21-214 (245)
186 cd04165 GTPBP1_like GTPBP1-lik 99.5 5.6E-13 1.2E-17 102.8 15.9 165 21-206 1-220 (224)
187 COG5019 CDC3 Septin family pro 99.5 5.9E-13 1.3E-17 106.3 15.9 151 17-181 21-199 (373)
188 smart00176 RAN Ran (Ras-relate 99.5 6E-13 1.3E-17 100.9 15.1 152 25-211 1-156 (200)
189 PRK05306 infB translation init 99.5 2.7E-13 5.9E-18 120.4 14.8 161 18-206 289-449 (787)
190 KOG2655 Septin family protein 99.5 4.9E-13 1.1E-17 107.5 14.8 157 16-185 18-199 (366)
191 PRK13537 nodulation ABC transp 99.5 4.2E-14 9.2E-19 114.2 8.9 164 16-189 30-218 (306)
192 PLN03127 Elongation factor Tu; 99.5 5.2E-13 1.1E-17 112.6 15.7 170 16-210 58-253 (447)
193 cd04103 Centaurin_gamma Centau 99.5 3.5E-13 7.5E-18 98.7 12.8 152 21-206 2-156 (158)
194 TIGR03680 eif2g_arch translati 99.5 1.7E-13 3.8E-18 114.7 12.6 168 18-210 3-197 (406)
195 PRK09866 hypothetical protein; 99.5 3.9E-13 8.5E-18 114.8 14.3 120 70-206 231-350 (741)
196 COG1116 TauB ABC-type nitrate/ 99.5 1.9E-13 4E-18 104.3 11.0 157 13-184 23-206 (248)
197 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 4.7E-14 1E-18 108.7 7.9 162 14-186 25-216 (254)
198 TIGR00231 small_GTP small GTP- 99.5 5E-13 1.1E-17 96.9 13.1 154 20-205 2-160 (161)
199 PRK13536 nodulation factor exp 99.5 8E-14 1.7E-18 113.9 9.7 164 16-189 64-252 (340)
200 TIGR01188 drrA daunorubicin re 99.5 5E-14 1.1E-18 113.7 8.3 164 15-188 15-203 (302)
201 PRK04000 translation initiatio 99.5 3.9E-13 8.5E-18 112.6 13.6 170 16-210 6-202 (411)
202 PTZ00132 GTP-binding nuclear p 99.5 2.3E-12 5E-17 99.1 16.9 160 16-211 6-170 (215)
203 PRK12317 elongation factor 1-a 99.5 2.1E-13 4.5E-18 115.2 12.0 120 16-151 3-153 (425)
204 TIGR00485 EF-Tu translation el 99.5 1.7E-12 3.7E-17 108.4 17.3 121 16-152 9-143 (394)
205 KOG1191 Mitochondrial GTPase [ 99.5 3.1E-13 6.8E-18 111.1 12.4 135 14-152 263-404 (531)
206 COG3840 ThiQ ABC-type thiamine 99.5 3.7E-14 8E-19 102.7 6.1 167 15-190 21-211 (231)
207 TIGR00437 feoB ferrous iron tr 99.5 3.5E-13 7.5E-18 117.4 13.3 153 26-208 1-154 (591)
208 PRK00049 elongation factor Tu; 99.5 1.1E-12 2.4E-17 109.5 15.7 170 17-209 10-203 (396)
209 COG1163 DRG Predicted GTPase [ 99.5 1.1E-13 2.4E-18 108.5 8.9 95 13-114 57-151 (365)
210 cd01886 EF-G Elongation factor 99.5 9.2E-13 2E-17 104.3 14.3 115 21-152 1-131 (270)
211 KOG0394 Ras-related GTPase [Ge 99.5 2E-13 4.4E-18 98.4 9.5 171 17-213 7-182 (210)
212 TIGR01394 TypA_BipA GTP-bindin 99.5 1.2E-12 2.5E-17 113.9 16.0 115 20-151 2-130 (594)
213 TIGR03522 GldA_ABC_ATP gliding 99.5 1.5E-13 3.1E-18 110.9 9.5 163 17-189 26-212 (301)
214 KOG1490 GTP-binding protein CR 99.5 2.3E-13 5E-18 112.0 10.2 139 11-159 160-301 (620)
215 cd03293 ABC_NrtD_SsuB_transpor 99.5 2.1E-13 4.5E-18 105.3 9.4 162 16-188 27-213 (220)
216 cd01873 RhoBTB RhoBTB subfamil 99.5 9.4E-13 2E-17 99.6 12.8 169 20-207 3-194 (195)
217 COG4148 ModC ABC-type molybdat 99.5 2E-14 4.3E-19 110.6 3.6 159 20-190 25-210 (352)
218 TIGR00960 3a0501s02 Type II (G 99.5 1.6E-13 3.4E-18 105.6 8.6 158 16-186 26-215 (216)
219 TIGR01186 proV glycine betaine 99.5 2.1E-13 4.6E-18 112.0 9.5 165 15-188 15-209 (363)
220 cd03261 ABC_Org_Solvent_Resist 99.5 2.3E-13 5E-18 106.1 9.0 161 15-188 22-216 (235)
221 TIGR00491 aIF-2 translation in 99.5 1.4E-12 3.1E-17 113.0 14.7 114 20-151 5-135 (590)
222 PF08477 Miro: Miro-like prote 99.5 2.7E-13 5.9E-18 94.4 8.5 116 21-148 1-119 (119)
223 COG0411 LivG ABC-type branched 99.5 7.6E-15 1.6E-19 111.1 0.4 168 13-189 24-230 (250)
224 PF00071 Ras: Ras family; Int 99.5 1.9E-12 4.2E-17 94.9 13.3 155 21-208 1-160 (162)
225 TIGR01288 nodI ATP-binding ABC 99.5 2.4E-13 5.3E-18 109.8 9.2 164 15-188 26-214 (303)
226 cd04168 TetM_like Tet(M)-like 99.5 1.1E-12 2.4E-17 102.1 12.4 115 21-152 1-131 (237)
227 cd04169 RF3 RF3 subfamily. Pe 99.5 2.4E-12 5.2E-17 101.8 14.4 117 19-152 2-138 (267)
228 cd03230 ABC_DR_subfamily_A Thi 99.5 7.3E-13 1.6E-17 98.4 10.8 135 17-186 24-172 (173)
229 cd04167 Snu114p Snu114p subfam 99.5 3.1E-13 6.7E-18 103.8 8.9 115 20-150 1-136 (213)
230 PRK11432 fbpC ferric transport 99.5 3.1E-13 6.7E-18 110.9 9.0 165 16-189 29-217 (351)
231 COG4586 ABC-type uncharacteriz 99.5 2.8E-14 6.1E-19 109.4 2.7 169 12-190 43-238 (325)
232 cd03226 ABC_cobalt_CbiO_domain 99.5 6.6E-14 1.4E-18 106.9 4.7 158 16-186 23-203 (205)
233 cd03259 ABC_Carb_Solutes_like 99.5 3E-13 6.4E-18 103.9 8.3 160 15-187 22-209 (213)
234 COG1100 GTPase SAR1 and relate 99.5 8.4E-12 1.8E-16 96.1 16.4 116 20-152 6-126 (219)
235 PTZ00327 eukaryotic translatio 99.5 1.6E-12 3.4E-17 109.7 13.2 172 15-211 30-235 (460)
236 TIGR02673 FtsE cell division A 99.4 4.1E-13 9E-18 103.2 8.9 157 16-185 25-213 (214)
237 KOG0098 GTPase Rab2, small G p 99.4 4E-12 8.6E-17 92.0 13.3 155 19-204 6-163 (216)
238 COG1136 SalX ABC-type antimicr 99.4 2.1E-13 4.5E-18 103.6 7.0 170 7-186 19-219 (226)
239 cd03262 ABC_HisP_GlnQ_permease 99.4 3.6E-13 7.8E-18 103.4 8.5 158 16-186 23-212 (213)
240 TIGR02034 CysN sulfate adenyly 99.4 1.9E-12 4.1E-17 108.4 13.3 117 20-152 1-148 (406)
241 COG1137 YhbG ABC-type (unclass 99.4 1.2E-14 2.5E-19 106.8 0.0 169 14-190 25-220 (243)
242 cd03219 ABC_Mj1267_LivG_branch 99.4 2.4E-13 5.2E-18 106.0 7.4 160 16-188 23-222 (236)
243 PLN00023 GTP-binding protein; 99.4 2.9E-12 6.4E-17 102.4 13.6 122 16-152 18-166 (334)
244 PRK09536 btuD corrinoid ABC tr 99.4 3.6E-13 7.8E-18 112.0 8.7 160 17-189 27-219 (402)
245 KOG0073 GTP-binding ADP-ribosy 99.4 1.6E-11 3.6E-16 87.0 15.7 164 18-210 15-179 (185)
246 KOG0080 GTPase Rab18, small G 99.4 2.3E-12 4.9E-17 91.0 11.2 159 20-208 12-173 (209)
247 cd03269 ABC_putative_ATPase Th 99.4 2.6E-13 5.5E-18 104.0 7.2 157 17-187 24-206 (210)
248 TIGR01393 lepA GTP-binding pro 99.4 2.6E-12 5.7E-17 111.9 14.2 163 19-211 3-182 (595)
249 COG0488 Uup ATPase components 99.4 3.7E-13 8.1E-18 115.0 8.7 69 115-188 152-229 (530)
250 TIGR00483 EF-1_alpha translati 99.4 2.5E-12 5.3E-17 108.6 13.4 120 16-151 4-155 (426)
251 COG4152 ABC-type uncharacteriz 99.4 1.5E-13 3.2E-18 104.0 5.4 169 11-188 20-209 (300)
252 COG1124 DppF ABC-type dipeptid 99.4 1.3E-13 2.8E-18 104.4 5.1 165 15-190 29-223 (252)
253 cd03258 ABC_MetN_methionine_tr 99.4 6.5E-13 1.4E-17 103.4 9.2 164 17-189 29-221 (233)
254 PRK10218 GTP-binding protein; 99.4 4.2E-12 9.2E-17 110.4 15.1 118 18-152 4-135 (607)
255 PRK11247 ssuB aliphatic sulfon 99.4 5.8E-13 1.3E-17 105.0 8.9 157 16-187 35-212 (257)
256 PRK05506 bifunctional sulfate 99.4 2.4E-12 5.2E-17 113.6 13.7 121 15-151 20-171 (632)
257 cd00882 Ras_like_GTPase Ras-li 99.4 9.4E-12 2E-16 89.3 14.5 112 24-152 1-117 (157)
258 cd03229 ABC_Class3 This class 99.4 6.9E-13 1.5E-17 99.0 8.7 135 17-184 24-176 (178)
259 PRK11650 ugpC glycerol-3-phosp 99.4 3.5E-13 7.7E-18 110.8 7.8 161 16-189 27-215 (356)
260 PRK11000 maltose/maltodextrin 99.4 7.5E-13 1.6E-17 109.5 9.7 161 16-189 26-214 (369)
261 COG3638 ABC-type phosphate/pho 99.4 8.4E-14 1.8E-18 104.8 3.7 165 15-190 26-229 (258)
262 cd04170 EF-G_bact Elongation f 99.4 4.5E-12 9.6E-17 100.7 13.7 115 21-152 1-131 (268)
263 cd03215 ABC_Carb_Monos_II This 99.4 6.3E-13 1.4E-17 99.6 8.3 140 16-186 23-181 (182)
264 cd03256 ABC_PhnC_transporter A 99.4 5.2E-13 1.1E-17 104.5 8.2 161 15-188 23-224 (241)
265 PRK05124 cysN sulfate adenylyl 99.4 2.6E-12 5.7E-17 109.3 13.0 121 15-151 23-174 (474)
266 cd03294 ABC_Pro_Gly_Bertaine T 99.4 1E-12 2.2E-17 104.4 9.8 161 15-188 46-240 (269)
267 cd04105 SR_beta Signal recogni 99.4 5.7E-12 1.2E-16 96.0 13.5 116 21-152 2-124 (203)
268 TIGR03265 PhnT2 putative 2-ami 99.4 5.7E-13 1.2E-17 109.4 8.5 164 17-189 28-215 (353)
269 cd03218 ABC_YhbG The ABC trans 99.4 4.6E-13 1E-17 104.2 7.6 160 16-188 23-212 (232)
270 PRK11153 metN DL-methionine tr 99.4 7.8E-13 1.7E-17 108.4 9.2 161 15-188 27-220 (343)
271 KOG0087 GTPase Rab11/YPT3, sma 99.4 3.7E-12 8.1E-17 94.0 11.8 116 20-152 15-134 (222)
272 COG1126 GlnQ ABC-type polar am 99.4 5E-14 1.1E-18 104.8 1.9 168 12-188 21-215 (240)
273 cd03298 ABC_ThiQ_thiamine_tran 99.4 8.4E-13 1.8E-17 101.3 8.8 159 16-187 21-207 (211)
274 KOG0086 GTPase Rab4, small G p 99.4 1.3E-11 2.8E-16 86.5 13.7 152 20-202 10-164 (214)
275 KOG1547 Septin CDC10 and relat 99.4 1.7E-11 3.6E-16 92.5 15.3 138 17-163 44-208 (336)
276 COG3839 MalK ABC-type sugar tr 99.4 4.4E-13 9.5E-18 107.8 7.4 165 15-190 25-215 (338)
277 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 8.4E-13 1.8E-17 101.8 8.7 156 16-185 27-216 (218)
278 TIGR02314 ABC_MetN D-methionin 99.4 9.7E-13 2.1E-17 107.4 9.5 160 16-188 28-220 (343)
279 TIGR02315 ABC_phnC phosphonate 99.4 5.5E-13 1.2E-17 104.5 7.8 160 16-188 25-225 (243)
280 cd03225 ABC_cobalt_CbiO_domain 99.4 9.2E-13 2E-17 101.0 8.8 157 16-185 24-210 (211)
281 cd03292 ABC_FtsE_transporter F 99.4 9.2E-13 2E-17 101.2 8.8 157 17-186 25-213 (214)
282 KOG0095 GTPase Rab30, small G 99.4 9.1E-12 2E-16 86.9 12.8 160 19-209 7-170 (213)
283 TIGR01184 ntrCD nitrate transp 99.4 1.3E-12 2.7E-17 101.6 9.6 157 17-188 9-194 (230)
284 cd03266 ABC_NatA_sodium_export 99.4 5.4E-13 1.2E-17 102.8 7.4 158 17-187 29-214 (218)
285 cd03296 ABC_CysA_sulfate_impor 99.4 1.1E-12 2.4E-17 102.5 9.1 160 16-188 25-216 (239)
286 PRK10070 glycine betaine trans 99.4 1.2E-12 2.7E-17 108.7 9.8 160 16-188 51-244 (400)
287 cd03265 ABC_DrrA DrrA is the A 99.4 7E-13 1.5E-17 102.4 7.8 159 17-188 24-211 (220)
288 cd03268 ABC_BcrA_bacitracin_re 99.4 2E-13 4.2E-18 104.5 4.6 158 17-187 24-204 (208)
289 PRK11124 artP arginine transpo 99.4 8E-13 1.7E-17 103.5 8.1 160 16-188 25-220 (242)
290 PRK04004 translation initiatio 99.4 1.3E-11 2.9E-16 107.3 16.4 113 20-150 7-136 (586)
291 cd03213 ABCG_EPDR ABCG transpo 99.4 1.6E-12 3.5E-17 98.3 9.4 144 16-187 32-190 (194)
292 PRK05433 GTP-binding protein L 99.4 9.8E-12 2.1E-16 108.5 15.5 164 18-211 6-186 (600)
293 cd03264 ABC_drug_resistance_li 99.4 4.6E-13 9.9E-18 102.7 6.5 156 18-187 25-207 (211)
294 PRK11144 modC molybdate transp 99.4 1.2E-12 2.7E-17 107.6 9.4 160 17-189 22-209 (352)
295 PRK10908 cell division protein 99.4 1.2E-12 2.5E-17 101.3 8.7 158 17-187 26-215 (222)
296 PRK10851 sulfate/thiosulfate t 99.4 1.3E-12 2.9E-17 107.3 9.5 159 17-188 26-216 (353)
297 TIGR03411 urea_trans_UrtD urea 99.4 8E-13 1.7E-17 103.5 7.8 160 16-188 25-221 (242)
298 PF05049 IIGP: Interferon-indu 99.4 7.1E-12 1.5E-16 102.1 13.4 175 19-212 35-221 (376)
299 cd03301 ABC_MalK_N The N-termi 99.4 1.1E-12 2.4E-17 100.7 8.4 159 16-187 23-209 (213)
300 TIGR02142 modC_ABC molybdenum 99.4 1.4E-12 3E-17 107.4 9.4 159 17-188 21-211 (354)
301 PRK11264 putative amino-acid A 99.4 1.6E-12 3.5E-17 102.3 9.3 161 16-189 26-224 (250)
302 PRK13546 teichoic acids export 99.4 4.9E-12 1.1E-16 100.0 12.0 151 16-189 47-223 (264)
303 PRK11300 livG leucine/isoleuci 99.4 6.9E-13 1.5E-17 104.7 7.1 161 16-189 28-234 (255)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 3.6E-12 7.8E-17 91.8 10.2 112 16-185 23-143 (144)
305 PRK10619 histidine/lysine/argi 99.4 1.6E-12 3.4E-17 102.7 9.1 162 16-189 28-232 (257)
306 cd03263 ABC_subfamily_A The AB 99.4 1.3E-12 2.8E-17 100.9 8.3 160 16-188 25-211 (220)
307 PLN03126 Elongation factor Tu; 99.4 1.7E-11 3.6E-16 104.2 15.6 140 15-176 77-230 (478)
308 cd03216 ABC_Carb_Monos_I This 99.4 9.4E-13 2E-17 96.8 7.0 126 16-187 23-160 (163)
309 PRK09452 potA putrescine/sperm 99.4 1.2E-12 2.5E-17 108.2 8.3 164 17-189 38-225 (375)
310 COG1125 OpuBA ABC-type proline 99.4 3.2E-13 6.9E-18 102.8 4.5 165 15-189 23-216 (309)
311 COG1122 CbiO ABC-type cobalt t 99.4 2E-12 4.3E-17 99.8 8.9 165 13-189 24-219 (235)
312 cd03224 ABC_TM1139_LivF_branch 99.4 1.5E-12 3.3E-17 100.6 8.4 161 16-188 23-211 (222)
313 TIGR03740 galliderm_ABC gallid 99.4 1E-12 2.2E-17 101.7 7.3 158 17-188 24-203 (223)
314 PRK13643 cbiO cobalt transport 99.4 3E-12 6.4E-17 102.7 10.2 162 15-189 28-224 (288)
315 PRK11248 tauB taurine transpor 99.4 2.2E-12 4.9E-17 101.6 9.3 154 16-184 24-204 (255)
316 COG2229 Predicted GTPase [Gene 99.4 4.6E-11 1E-15 86.6 15.1 118 19-152 10-136 (187)
317 PRK13543 cytochrome c biogenes 99.4 1.3E-12 2.8E-17 100.4 7.7 154 16-182 34-210 (214)
318 cd03246 ABCC_Protease_Secretio 99.4 3.6E-12 7.9E-17 94.7 9.6 133 16-186 25-172 (173)
319 PRK10584 putative ABC transpor 99.4 1.8E-12 4E-17 100.5 8.4 157 17-187 34-224 (228)
320 PRK11607 potG putrescine trans 99.4 2.2E-12 4.7E-17 106.8 9.3 164 17-189 43-230 (377)
321 cd03297 ABC_ModC_molybdenum_tr 99.4 2.5E-12 5.4E-17 98.8 8.8 155 20-187 24-210 (214)
322 PF00350 Dynamin_N: Dynamin fa 99.4 4.3E-12 9.3E-17 93.7 9.7 67 70-147 102-168 (168)
323 TIGR00972 3a0107s01c2 phosphat 99.4 2.5E-12 5.5E-17 101.0 8.9 165 16-188 24-222 (247)
324 TIGR01277 thiQ thiamine ABC tr 99.4 3.2E-12 6.9E-17 98.2 9.2 161 15-188 20-208 (213)
325 PTZ00141 elongation factor 1- 99.4 9.7E-12 2.1E-16 105.1 12.9 118 16-149 4-157 (446)
326 cd03295 ABC_OpuCA_Osmoprotecti 99.4 2.4E-12 5.2E-17 100.8 8.6 163 16-189 24-216 (242)
327 PRK09493 glnQ glutamine ABC tr 99.4 2.2E-12 4.8E-17 100.8 8.3 160 16-188 24-215 (240)
328 KOG0079 GTP-binding protein H- 99.4 1.9E-11 4.1E-16 85.2 11.8 157 21-209 10-169 (198)
329 cd03235 ABC_Metallic_Cations A 99.4 1.4E-12 3E-17 100.2 6.9 155 16-185 22-208 (213)
330 PRK10771 thiQ thiamine transpo 99.4 2.8E-12 6.2E-17 99.7 8.7 160 16-188 22-209 (232)
331 TIGR03258 PhnT 2-aminoethylpho 99.4 2.6E-12 5.6E-17 105.8 8.8 164 17-189 29-219 (362)
332 PRK11831 putative ABC transpor 99.4 3.9E-12 8.5E-17 101.1 9.5 164 16-188 30-223 (269)
333 TIGR03415 ABC_choXWV_ATP choli 99.4 4.4E-12 9.5E-17 104.8 10.1 165 16-189 47-245 (382)
334 COG0488 Uup ATPase components 99.4 9.7E-13 2.1E-17 112.5 6.3 160 13-184 342-511 (530)
335 TIGR02211 LolD_lipo_ex lipopro 99.4 3.6E-12 7.7E-17 98.5 8.9 158 15-186 27-218 (221)
336 PRK10575 iron-hydroxamate tran 99.4 2.5E-12 5.3E-17 102.0 8.2 160 16-188 34-227 (265)
337 cd03257 ABC_NikE_OppD_transpor 99.4 4.1E-12 9E-17 98.5 9.1 164 15-187 27-224 (228)
338 PRK13641 cbiO cobalt transport 99.4 2.7E-12 5.8E-17 103.0 8.2 164 15-188 29-224 (287)
339 PRK15439 autoinducer 2 ABC tra 99.4 1.6E-12 3.4E-17 112.3 7.3 160 16-188 34-219 (510)
340 cd01885 EF2 EF2 (for archaea a 99.4 1.1E-11 2.3E-16 95.4 11.0 115 20-150 1-138 (222)
341 cd03260 ABC_PstB_phosphate_tra 99.4 2.1E-12 4.6E-17 100.1 7.2 159 16-188 23-219 (227)
342 PRK10895 lipopolysaccharide AB 99.4 1.4E-12 3E-17 102.1 6.1 160 16-188 26-216 (241)
343 PRK13545 tagH teichoic acids e 99.3 6.2E-12 1.4E-16 106.6 10.3 150 16-188 47-222 (549)
344 PRK13637 cbiO cobalt transport 99.3 7.1E-12 1.5E-16 100.5 10.2 163 16-189 30-225 (287)
345 cd03233 ABC_PDR_domain1 The pl 99.3 9.4E-12 2E-16 94.7 10.4 149 17-187 31-198 (202)
346 cd03232 ABC_PDR_domain2 The pl 99.3 5.4E-12 1.2E-16 95.3 8.9 141 17-186 31-187 (192)
347 PRK11614 livF leucine/isoleuci 99.3 9.1E-13 2E-17 102.9 4.7 161 16-188 28-216 (237)
348 KOG0395 Ras-related GTPase [Ge 99.3 1.7E-11 3.7E-16 92.5 11.4 162 19-210 3-166 (196)
349 cd01883 EF1_alpha Eukaryotic e 99.3 2.5E-11 5.5E-16 93.6 12.6 114 21-150 1-150 (219)
350 cd03222 ABC_RNaseL_inhibitor T 99.3 7.3E-12 1.6E-16 92.9 9.2 114 16-185 22-148 (177)
351 TIGR03410 urea_trans_UrtE urea 99.3 4.1E-13 8.9E-18 104.3 2.6 163 16-188 23-211 (230)
352 PRK13638 cbiO cobalt transport 99.3 5.6E-12 1.2E-16 100.3 9.1 160 17-189 25-216 (271)
353 cd03228 ABCC_MRP_Like The MRP 99.3 3.2E-12 7E-17 94.8 7.3 131 16-184 25-169 (171)
354 TIGR00484 EF-G translation elo 99.3 5.4E-11 1.2E-15 106.0 16.2 120 16-152 7-142 (689)
355 COG0532 InfB Translation initi 99.3 4.8E-11 1E-15 99.7 14.8 162 20-209 6-170 (509)
356 cd03300 ABC_PotA_N PotA is an 99.3 7.9E-12 1.7E-16 97.3 9.6 161 17-188 24-210 (232)
357 COG1135 AbcC ABC-type metal io 99.3 4.6E-12 1E-16 99.2 8.1 167 11-190 24-223 (339)
358 TIGR03005 ectoine_ehuA ectoine 99.3 5.8E-12 1.3E-16 99.2 8.8 160 16-188 23-226 (252)
359 PRK00007 elongation factor G; 99.3 4.5E-11 9.7E-16 106.5 15.4 120 16-152 7-142 (693)
360 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 1.1E-11 2.3E-16 96.7 10.1 160 16-189 24-212 (236)
361 PRK15177 Vi polysaccharide exp 99.3 4.2E-12 9.1E-17 97.4 7.6 152 16-189 10-183 (213)
362 smart00053 DYNc Dynamin, GTPas 99.3 9.1E-11 2E-15 90.9 15.0 90 69-163 125-217 (240)
363 COG4917 EutP Ethanolamine util 99.3 2E-11 4.4E-16 82.7 9.7 139 20-207 2-144 (148)
364 PRK10762 D-ribose transporter 99.3 2.3E-12 5E-17 111.1 6.6 160 16-188 27-220 (501)
365 PRK11231 fecE iron-dicitrate t 99.3 5.2E-12 1.1E-16 99.7 8.1 69 115-188 137-217 (255)
366 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.7E-10 5.9E-15 88.1 17.5 113 16-152 36-148 (225)
367 COG3842 PotA ABC-type spermidi 99.3 3.3E-12 7.2E-17 103.3 7.0 165 13-190 25-218 (352)
368 PRK14267 phosphate ABC transpo 99.3 7.4E-12 1.6E-16 98.7 8.9 169 16-189 27-228 (253)
369 PRK11629 lolD lipoprotein tran 99.3 7E-12 1.5E-16 97.6 8.7 159 15-187 31-223 (233)
370 PRK15056 manganese/iron transp 99.3 6.8E-12 1.5E-16 99.9 8.8 68 115-188 141-220 (272)
371 PRK13631 cbiO cobalt transport 99.3 1.1E-11 2.4E-16 100.6 10.1 161 16-189 49-256 (320)
372 TIGR00968 3a0106s01 sulfate AB 99.3 7E-12 1.5E-16 97.9 8.6 165 16-189 23-211 (237)
373 PRK10253 iron-enterobactin tra 99.3 5E-12 1.1E-16 100.3 7.9 161 16-189 30-224 (265)
374 cd03237 ABC_RNaseL_inhibitor_d 99.3 9.9E-12 2.1E-16 97.4 9.4 145 17-184 23-191 (246)
375 PRK13651 cobalt transporter AT 99.3 9.5E-12 2.1E-16 100.4 9.5 69 115-188 164-244 (305)
376 PRK12739 elongation factor G; 99.3 5E-11 1.1E-15 106.2 14.8 119 17-152 6-140 (691)
377 cd03217 ABC_FeS_Assembly ABC-t 99.3 4.1E-12 8.8E-17 96.6 6.8 145 15-189 22-185 (200)
378 TIGR03873 F420-0_ABC_ATP propo 99.3 1.3E-11 2.8E-16 97.4 9.8 161 16-189 24-217 (256)
379 COG1127 Ttg2A ABC-type transpo 99.3 1.2E-12 2.7E-17 98.9 3.7 165 14-190 29-227 (263)
380 PRK09984 phosphonate/organopho 99.3 6.8E-12 1.5E-16 99.4 8.1 162 17-188 28-232 (262)
381 TIGR03771 anch_rpt_ABC anchore 99.3 1.5E-11 3.3E-16 95.1 9.8 156 17-188 4-191 (223)
382 PRK14247 phosphate ABC transpo 99.3 1.4E-11 3.1E-16 96.9 9.8 166 16-188 26-224 (250)
383 KOG1145 Mitochondrial translat 99.3 1E-10 2.2E-15 97.6 15.1 160 20-207 154-314 (683)
384 TIGR01978 sufC FeS assembly AT 99.3 7.3E-12 1.6E-16 98.1 8.0 162 15-188 22-224 (243)
385 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 9.8E-12 2.1E-16 96.2 8.6 68 115-187 141-220 (224)
386 PRK13634 cbiO cobalt transport 99.3 1.4E-11 3E-16 99.0 9.7 160 16-188 30-225 (290)
387 TIGR00503 prfC peptide chain r 99.3 6.3E-11 1.4E-15 101.9 14.3 119 17-152 9-147 (527)
388 cd01899 Ygr210 Ygr210 subfamil 99.3 7.5E-11 1.6E-15 95.3 13.9 86 22-114 1-110 (318)
389 cd03234 ABCG_White The White s 99.3 1.1E-11 2.5E-16 96.0 8.8 162 16-187 30-222 (226)
390 PRK13648 cbiO cobalt transport 99.3 1.2E-11 2.7E-16 98.2 9.2 159 17-189 33-222 (269)
391 PRK13652 cbiO cobalt transport 99.3 9.3E-12 2E-16 99.3 8.4 160 16-189 27-218 (277)
392 PRK10982 galactose/methyl gala 99.3 4.1E-12 8.9E-17 109.3 6.8 159 17-188 22-213 (491)
393 PRK13646 cbiO cobalt transport 99.3 1.8E-11 3.8E-16 98.2 10.0 159 17-188 31-225 (286)
394 PRK15112 antimicrobial peptide 99.3 9E-12 2E-16 98.9 8.3 164 13-188 33-229 (267)
395 PRK13636 cbiO cobalt transport 99.3 8.7E-12 1.9E-16 99.8 8.2 159 17-188 30-221 (283)
396 TIGR02769 nickel_nikE nickel i 99.3 1.3E-11 2.8E-16 97.9 9.1 162 15-188 33-230 (265)
397 PRK09700 D-allose transporter 99.3 3.5E-12 7.6E-17 110.2 6.3 160 16-188 28-224 (510)
398 cd03267 ABC_NatA_like Similar 99.3 1.2E-11 2.7E-16 96.4 8.8 158 17-187 45-232 (236)
399 TIGR01257 rim_protein retinal- 99.3 5.7E-12 1.2E-16 121.2 8.2 163 16-188 1962-2149(2272)
400 PRK13647 cbiO cobalt transport 99.3 6.3E-12 1.4E-16 100.1 7.3 159 16-188 28-217 (274)
401 cd03223 ABCD_peroxisomal_ALDP 99.3 3.2E-11 6.9E-16 89.0 10.4 129 16-183 24-161 (166)
402 COG1117 PstB ABC-type phosphat 99.3 1.4E-12 3.1E-17 96.9 3.2 169 12-190 26-229 (253)
403 KOG0093 GTPase Rab3, small G p 99.3 9.4E-11 2E-15 81.7 11.9 161 20-210 22-184 (193)
404 PRK10636 putative ABC transpor 99.3 3.8E-12 8.3E-17 112.4 6.3 155 16-188 335-506 (638)
405 TIGR02770 nickel_nikD nickel i 99.3 1E-11 2.2E-16 96.5 8.0 165 17-188 10-205 (230)
406 PRK13639 cbiO cobalt transport 99.3 2.2E-11 4.7E-16 97.1 10.0 159 17-189 26-217 (275)
407 cd03247 ABCC_cytochrome_bd The 99.3 1.1E-11 2.5E-16 92.4 7.8 137 16-187 25-174 (178)
408 COG4988 CydD ABC-type transpor 99.3 1E-11 2.2E-16 104.8 8.3 165 12-190 340-535 (559)
409 PRK14250 phosphate ABC transpo 99.3 1.2E-11 2.7E-16 96.7 8.3 159 17-188 27-211 (241)
410 PRK00741 prfC peptide chain re 99.3 8E-11 1.7E-15 101.3 13.8 119 17-152 8-146 (526)
411 PRK13635 cbiO cobalt transport 99.3 1.7E-11 3.6E-16 97.9 9.1 158 17-188 31-219 (279)
412 PRK13649 cbiO cobalt transport 99.3 1.1E-11 2.4E-16 99.1 8.0 160 16-188 30-224 (280)
413 KOG1707 Predicted Ras related/ 99.3 2.8E-11 6.1E-16 101.5 10.5 173 15-217 5-183 (625)
414 PRK14268 phosphate ABC transpo 99.3 4.3E-11 9.3E-16 94.6 11.2 165 17-189 36-233 (258)
415 PRK14251 phosphate ABC transpo 99.3 1.6E-11 3.5E-16 96.7 8.7 167 17-189 28-226 (251)
416 PRK13549 xylose transporter AT 99.3 5.4E-12 1.2E-16 108.9 6.5 161 15-188 27-222 (506)
417 COG1118 CysA ABC-type sulfate/ 99.3 1.5E-12 3.2E-17 101.7 2.8 162 11-189 20-218 (345)
418 PRK15079 oligopeptide ABC tran 99.3 1.5E-11 3.3E-16 100.2 8.8 163 15-189 43-242 (331)
419 PRK13633 cobalt transporter AT 99.3 2E-11 4.3E-16 97.6 9.3 157 17-188 34-223 (280)
420 PRK11288 araG L-arabinose tran 99.3 6.5E-12 1.4E-16 108.3 6.9 161 15-188 26-219 (501)
421 PRK14241 phosphate transporter 99.3 1.8E-11 4E-16 96.7 8.9 162 17-183 28-221 (258)
422 PRK11174 cysteine/glutathione 99.3 6.5E-12 1.4E-16 110.4 7.0 160 17-189 374-563 (588)
423 PRK13644 cbiO cobalt transport 99.3 7.1E-12 1.5E-16 99.8 6.5 159 16-188 25-214 (274)
424 PRK09602 translation-associate 99.3 3.4E-10 7.4E-15 94.1 16.7 88 20-114 2-113 (396)
425 KOG0091 GTPase Rab39, small G 99.3 7E-11 1.5E-15 83.8 10.6 159 20-208 9-172 (213)
426 PRK10744 pstB phosphate transp 99.3 2.4E-11 5.1E-16 96.2 9.4 165 17-189 37-235 (260)
427 PRK13548 hmuV hemin importer A 99.3 1.1E-11 2.4E-16 97.9 7.5 160 16-188 25-220 (258)
428 PRK13650 cbiO cobalt transport 99.3 1.3E-11 2.8E-16 98.6 7.9 158 17-188 31-219 (279)
429 PRK14242 phosphate transporter 99.3 1.9E-11 4.1E-16 96.4 8.7 165 16-188 29-227 (253)
430 TIGR01187 potA spermidine/putr 99.3 9.9E-12 2.1E-16 101.3 7.3 152 24-188 1-180 (325)
431 PRK14256 phosphate ABC transpo 99.3 3.4E-11 7.4E-16 94.8 10.2 167 16-189 27-227 (252)
432 PRK15064 ABC transporter ATP-b 99.3 4.1E-11 8.8E-16 104.1 11.6 68 115-187 154-230 (530)
433 PF09439 SRPRB: Signal recogni 99.3 3.3E-11 7.1E-16 89.0 9.3 120 19-152 3-127 (181)
434 PRK15064 ABC transporter ATP-b 99.3 9E-12 1.9E-16 108.1 7.4 153 16-188 342-514 (530)
435 cd03369 ABCC_NFT1 Domain 2 of 99.3 5.1E-11 1.1E-15 91.1 10.5 149 17-187 32-201 (207)
436 PRK13645 cbiO cobalt transport 99.3 2.8E-11 6E-16 97.2 9.4 159 17-188 35-230 (289)
437 cd03299 ABC_ModC_like Archeal 99.3 2.6E-11 5.7E-16 94.5 9.0 160 17-189 23-210 (235)
438 PRK11819 putative ABC transpor 99.3 4.1E-11 8.9E-16 104.5 11.2 68 115-187 162-238 (556)
439 PRK14269 phosphate ABC transpo 99.3 3E-11 6.4E-16 94.9 9.3 162 16-189 25-221 (246)
440 PRK14246 phosphate ABC transpo 99.3 3.2E-11 6.9E-16 95.2 9.5 166 17-189 34-232 (257)
441 COG2274 SunT ABC-type bacterio 99.3 9.5E-12 2.1E-16 109.8 7.2 165 14-190 494-688 (709)
442 PRK13642 cbiO cobalt transport 99.3 2.4E-11 5.2E-16 97.0 8.8 159 16-188 30-219 (277)
443 TIGR03608 L_ocin_972_ABC putat 99.3 1.7E-11 3.6E-16 93.7 7.6 134 17-163 22-179 (206)
444 PRK14248 phosphate ABC transpo 99.3 2.1E-11 4.6E-16 96.9 8.3 161 17-189 45-243 (268)
445 PRK10418 nikD nickel transport 99.3 1.7E-11 3.6E-16 96.7 7.6 167 16-189 26-221 (254)
446 PRK14240 phosphate transporter 99.3 3.2E-11 7E-16 94.9 9.2 167 17-189 27-225 (250)
447 PRK14235 phosphate transporter 99.3 2.5E-11 5.5E-16 96.3 8.6 165 16-188 42-241 (267)
448 PRK11022 dppD dipeptide transp 99.3 8.7E-12 1.9E-16 101.6 5.9 170 14-190 28-235 (326)
449 PRK15093 antimicrobial peptide 99.3 8.8E-12 1.9E-16 101.8 5.9 70 115-189 157-239 (330)
450 PRK14239 phosphate transporter 99.3 3.5E-11 7.6E-16 94.8 9.1 167 16-189 28-227 (252)
451 PRK14274 phosphate ABC transpo 99.3 3.1E-11 6.7E-16 95.5 8.8 164 17-188 36-233 (259)
452 PRK13351 elongation factor G; 99.2 1.3E-10 2.9E-15 103.6 13.7 118 18-152 7-140 (687)
453 PRK14273 phosphate ABC transpo 99.2 3.2E-11 6.9E-16 95.1 8.8 169 15-189 29-229 (254)
454 PRK11701 phnK phosphonate C-P 99.2 3.6E-11 7.8E-16 95.0 9.1 69 115-188 150-231 (258)
455 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 6.3E-11 1.4E-15 103.3 11.2 68 115-187 160-236 (552)
456 TIGR03269 met_CoM_red_A2 methy 99.2 1.8E-11 3.9E-16 106.1 7.8 163 15-188 306-507 (520)
457 PRK14263 phosphate ABC transpo 99.2 7.7E-11 1.7E-15 93.2 10.7 160 16-183 31-222 (261)
458 cd03231 ABC_CcmA_heme_exporter 99.2 2.3E-11 4.9E-16 92.6 7.4 136 15-163 22-170 (201)
459 PRK14257 phosphate ABC transpo 99.2 3.6E-11 7.7E-16 98.0 8.9 167 16-190 105-305 (329)
460 PRK14259 phosphate ABC transpo 99.2 4.9E-11 1.1E-15 94.8 9.4 65 115-184 153-228 (269)
461 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1.2E-11 2.5E-16 110.6 6.5 163 16-190 476-665 (686)
462 PRK14272 phosphate ABC transpo 99.2 8.1E-11 1.8E-15 92.7 10.6 169 16-189 27-227 (252)
463 PRK10419 nikE nickel transport 99.2 4.7E-11 1E-15 94.9 9.1 160 17-188 36-231 (268)
464 PRK14270 phosphate ABC transpo 99.2 5.7E-11 1.2E-15 93.5 9.5 166 16-189 27-226 (251)
465 PRK11147 ABC transporter ATPas 99.2 1.1E-11 2.3E-16 109.7 5.9 153 16-188 342-517 (635)
466 cd03251 ABCC_MsbA MsbA is an e 99.2 6.9E-11 1.5E-15 92.1 9.8 160 16-188 25-215 (234)
467 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 1.4E-11 3E-16 110.6 6.6 158 16-189 502-691 (710)
468 PRK14238 phosphate transporter 99.2 3E-11 6.6E-16 96.1 7.8 168 16-189 47-246 (271)
469 PRK13538 cytochrome c biogenes 99.2 2.3E-11 5E-16 92.8 6.9 135 16-163 24-174 (204)
470 PLN00043 elongation factor 1-a 99.2 2.8E-10 6.2E-15 96.2 14.1 118 17-150 5-158 (447)
471 PRK14262 phosphate ABC transpo 99.2 5.2E-11 1.1E-15 93.7 9.0 168 16-189 26-225 (250)
472 PRK11288 araG L-arabinose tran 99.2 1.7E-11 3.7E-16 105.7 6.8 69 115-188 395-475 (501)
473 cd03245 ABCC_bacteriocin_expor 99.2 5E-11 1.1E-15 92.0 8.6 159 16-187 27-216 (220)
474 cd00267 ABC_ATPase ABC (ATP-bi 99.2 6.3E-11 1.4E-15 86.6 8.7 121 17-184 23-155 (157)
475 PRK13657 cyclic beta-1,2-gluca 99.2 2.7E-11 5.9E-16 106.4 8.0 162 16-189 358-549 (588)
476 cd03214 ABC_Iron-Siderophores_ 99.2 1.9E-11 4.1E-16 91.4 6.0 139 16-187 22-176 (180)
477 COG1132 MdlB ABC-type multidru 99.2 7.4E-11 1.6E-15 103.3 10.6 167 16-202 352-552 (567)
478 PRK10636 putative ABC transpor 99.2 1.1E-10 2.3E-15 103.3 11.6 68 115-187 148-224 (638)
479 PRK13640 cbiO cobalt transport 99.2 4.2E-11 9.1E-16 95.8 8.3 161 17-188 31-222 (282)
480 PRK14265 phosphate ABC transpo 99.2 9.9E-11 2.1E-15 93.3 10.4 160 16-183 43-234 (274)
481 PRK09700 D-allose transporter 99.2 4E-11 8.6E-16 103.7 8.7 69 115-188 408-488 (510)
482 PRK15439 autoinducer 2 ABC tra 99.2 1.3E-11 2.8E-16 106.6 5.6 69 115-188 402-482 (510)
483 PLN03073 ABC transporter F fam 99.2 4.3E-11 9.4E-16 106.5 9.0 150 16-188 532-703 (718)
484 PRK13632 cbiO cobalt transport 99.2 3.3E-11 7.3E-16 95.9 7.4 159 16-188 32-221 (271)
485 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 4.9E-11 1.1E-15 104.0 9.0 150 16-185 345-516 (552)
486 PRK14258 phosphate ABC transpo 99.2 7.5E-11 1.6E-15 93.4 9.3 164 15-184 29-226 (261)
487 PRK09544 znuC high-affinity zi 99.2 5E-11 1.1E-15 93.7 8.2 148 16-184 27-196 (251)
488 PRK14261 phosphate ABC transpo 99.2 1.1E-10 2.3E-15 92.1 10.0 165 17-188 30-227 (253)
489 PRK10762 D-ribose transporter 99.2 2E-11 4.4E-16 105.3 6.3 69 115-188 394-474 (501)
490 PRK11819 putative ABC transpor 99.2 3.6E-11 7.9E-16 104.9 8.0 152 16-187 347-521 (556)
491 PRK14245 phosphate ABC transpo 99.2 7.9E-11 1.7E-15 92.7 9.1 70 115-189 145-225 (250)
492 PRK03695 vitamin B12-transport 99.2 6.3E-11 1.4E-15 93.1 8.4 159 16-188 19-212 (248)
493 PRK11308 dppF dipeptide transp 99.2 6.5E-11 1.4E-15 96.4 8.7 165 14-190 36-236 (327)
494 PRK14249 phosphate ABC transpo 99.2 1.1E-10 2.3E-15 92.0 9.7 167 17-189 28-226 (251)
495 TIGR02323 CP_lyasePhnK phospho 99.2 6.7E-11 1.5E-15 93.2 8.5 69 115-188 147-228 (253)
496 PRK10261 glutathione transport 99.2 3E-11 6.5E-16 106.6 7.2 163 14-188 345-543 (623)
497 PRK14271 phosphate ABC transpo 99.2 5.4E-11 1.2E-15 94.9 8.0 166 17-188 45-241 (276)
498 COG1129 MglA ABC-type sugar tr 99.2 9.7E-11 2.1E-15 98.4 9.7 179 14-205 29-243 (500)
499 PRK10938 putative molybdenum t 99.2 2.1E-11 4.5E-16 104.9 6.0 162 14-188 24-214 (490)
500 KOG0057 Mitochondrial Fe/S clu 99.2 3.5E-11 7.5E-16 100.6 6.9 167 15-202 374-574 (591)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=1.2e-32 Score=210.88 Aligned_cols=203 Identities=41% Similarity=0.728 Sum_probs=165.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|++|+||||++|+|+|...+.++....++|..+..... ...+..+.++||||+.+.....++..+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 48999999999999999999999988777666677777666554 47888999999999999887777777888888887
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
..+++|++++|++++ +++..++..++.+...|+...+++++|++|+.|.... ..+.++++...+..++++++.|..+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 788999999999998 9999999999999999999989999999999998887 7788988864456799999999999
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhcc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLL 226 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
++.|+...........++.+|++.|++++.++++.+|.+++|++.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~ 203 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE 203 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 99999984333445688999999999999999999999999998764
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=3.1e-31 Score=201.15 Aligned_cols=196 Identities=51% Similarity=0.847 Sum_probs=166.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... ..+..+.++||||+.+.....+...+++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 479999999999999999999998765554444566655544433 4677899999999998876555666677777766
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
..+++|++++++++. +++..+...++.+...++...++++++++|+.|.... ..+++++.. ....++.+++.|..+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 678999999999998 4999999999999999998777899999999999887 789998887 347899999999999
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhh
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 221 (228)
++.|++... ++..+.++.+|++.|+++++++++++|.+++|
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999887 77889999999999999999999999999875
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=4.6e-24 Score=165.10 Aligned_cols=176 Identities=23% Similarity=0.334 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
..|+|+|++++|||||+|+|.|.+. +..+..+.||.....+....+...+.++||||++.... .+.+.+.+....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch---HHHHHHHHHHHH
Confidence 5899999999999999999999988 67778899999888888777788899999999998643 333445555566
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
+...+|+++|++++...+..++...++.+.. . + .|+++++||+|.... .. +...+.. .....
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~-~--~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~~----- 144 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--T-K--TPVILVVNKIDKVKP--KTVLLKLIAF-----LKKLL----- 144 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--c-C--CCeEEEEEccccCCc--HHHHHHHHHH-----HHhhC-----
Confidence 7789999999999997799999888887776 1 1 279999999999877 55 3333332 22211
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhh
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKV 222 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 222 (228)
.|...++.||.++.+++.|++.+...+++ +++|+++.+.
T Consensus 145 ---~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe--g~~~yp~d~i 183 (298)
T COG1159 145 ---PFKEIVPISALKGDNVDTLLEIIKEYLPE--GPWYYPEDQI 183 (298)
T ss_pred ---CcceEEEeeccccCCHHHHHHHHHHhCCC--CCCcCChhhc
Confidence 23366778999999999999999999998 5567766554
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=9.9e-21 Score=150.32 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+|+|++|||||||+|+|+|... +.++..+.|+...........+..+.++||||+..... ...+.+.+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHH
Confidence 689999999999999999999875 33344455655544444434556689999999876522 1222233333344
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
...+|++++++|++...+.. ...+..+... . +|+++|+||+|.... ..+...+.. +.....
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~---~--~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL---K--RPVVLTRNKLDNKFK--DKLLPLIDK--------YAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc---C--CCEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC---
Confidence 56889999999998555543 3334444321 1 379999999998754 444433322 222111
Q ss_pred EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+...++.||.++.++++|++.+.+.+++.
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 12346678889999999999999998774
No 5
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.85 E-value=8.8e-20 Score=144.23 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=130.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
....+..+|+|+|.+|+||||++|+|+|.......... +.+....... ....+..+.++||||+.+.....+...+.+
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~-~~~~G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVS-RTRAGFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEE-EEECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence 33455689999999999999999999998763322211 1122211111 224677899999999998643333221112
Q ss_pred HHHHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..++ ...++|++++|.+++ .+++..+.+.++.+...|+...++++++++||.|...+++..+++++.+ ++|.++.+
T Consensus 111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~ 187 (313)
T TIGR00991 111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV 187 (313)
T ss_pred HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence 2221 224799999998765 4788889999999999999888889999999999775444789999986 78888877
Q ss_pred HHhcCC-----------eEEEeeC--CCccccc------c-hHHHHHHHHHHHHHHHhcCCCCCCh
Q 027090 173 LQLCDN-----------RCVLFDN--KTKDEAK------G-TEQVRQLLSLVNSVIVQNGGQPYTD 218 (228)
Q Consensus 173 ~~~~~~-----------~~~~~~~--~~~~~~~------~-~~~~~~l~~~i~~~~~~~~~~~~~~ 218 (228)
++.+.+ .+.+..+ .+..... . ..=++.|++.|.+++.....+-.++
T Consensus 188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~ 253 (313)
T TIGR00991 188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVD 253 (313)
T ss_pred HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEec
Confidence 775432 2222222 1111110 0 1235778888888877655543333
No 6
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=6.2e-21 Score=137.43 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~~~~ 98 (228)
++|+++|.+++|||||+|+|+|.... ..+.+.++...........+..+.++|+||+++......+ +.+ ..++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~---v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK---VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE--ERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE---EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce---ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence 47999999999999999999999843 2233333333333333356788999999999886544322 222 22322
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.+.+|+++.++|++ .+. +-+.++..+.... +|+++++||+|...+ ..+.- +.+.+.+...-
T Consensus 76 --~~~~D~ii~VvDa~-~l~----r~l~l~~ql~e~g--~P~vvvlN~~D~a~~--~g~~i--------d~~~Ls~~Lg~ 136 (156)
T PF02421_consen 76 --SEKPDLIIVVVDAT-NLE----RNLYLTLQLLELG--IPVVVVLNKMDEAER--KGIEI--------DAEKLSERLGV 136 (156)
T ss_dssp --HTSSSEEEEEEEGG-GHH----HHHHHHHHHHHTT--SSEEEEEETHHHHHH--TTEEE---------HHHHHHHHTS
T ss_pred --hcCCCEEEEECCCC-CHH----HHHHHHHHHHHcC--CCEEEEEeCHHHHHH--cCCEE--------CHHHHHHHhCC
Confidence 35789999999998 332 2233333333223 389999999998765 32221 12223333232
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLV 204 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i 204 (228)
+.++.+|.++.++++|+++|
T Consensus 137 ------pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 137 ------PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------EEEEBTTTTBTHHHHHHHH
T ss_pred ------CEEEEEeCCCcCHHHHHhhC
Confidence 23445666789999998875
No 7
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=9.2e-20 Score=146.53 Aligned_cols=169 Identities=20% Similarity=0.304 Sum_probs=112.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
...|+|+|++|||||||+|+|+|... ........|+...........+..+.++||||+.+... ...+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---ALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh---HHHHHHHHHHH
Confidence 35799999999999999999999875 22334445555444433333456799999999876542 22233333334
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC-ccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.....+|++++++++...++..+...++.+... . .|+++++||+|.. .. ..+...++. +.+...
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~---~--~pvilVlNKiDl~~~~--~~l~~~~~~--------l~~~~~ 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV---K--TPVILVLNKIDLVKDK--EELLPLLEE--------LSELMD 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc---C--CCEEEEEECCcCCCCH--HHHHHHHHH--------HHhhCC
Confidence 445688999999999866777666665555421 2 3799999999997 33 444444433 222111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+...++.|+.++.++++|++.+.+.++++.
T Consensus 145 -----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 145 -----FAEIVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred -----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 123345677788999999999999988743
No 8
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.82 E-value=1.3e-18 Score=148.22 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=120.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|++|+|||||+|+|+|...+..... ...|+...... ....+..+.+|||||+.+...... ..+++.+.+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~-~~idG~~L~VIDTPGL~dt~~dq~-~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIE-GLVQGVKIRVIDTPGLKSSASDQS-KNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEE-EEECCceEEEEECCCCCccccchH-HHHHHHHHH
Confidence 346899999999999999999999976554432 23454442222 224677899999999998754322 223444443
Q ss_pred hh--ccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc-----hhhHHHHhhccCCchH
Q 027090 98 GM--AKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-----EKTLEDFLGHECPKPL 169 (228)
Q Consensus 98 ~~--~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-----~~~~~~~~~~~~~~~~ 169 (228)
.. ...++|++|+|++++. +...++...++.+...|+...++++|||+|+.|...++ +..++.++.+ ++|.+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L 272 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV 272 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence 22 2236899999998862 23346778999999999999999999999999988642 1579999986 88999
Q ss_pred HHHHHhcCCeEEEee
Q 027090 170 KEILQLCDNRCVLFD 184 (228)
Q Consensus 170 ~~~~~~~~~~~~~~~ 184 (228)
+++++.|.+...+++
T Consensus 273 q~~Irq~~g~~~l~n 287 (763)
T TIGR00993 273 QQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHhcCcceecc
Confidence 999999999766665
No 9
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.8e-18 Score=126.38 Aligned_cols=174 Identities=16% Similarity=0.222 Sum_probs=113.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
|.....-|+++|++++|||||||+|+|+.....-....+.|...+.+... ..+.++|.||++-...+.+. .+.|.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~-~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEV-KEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHH-HHHHH
Confidence 34455689999999999999999999976322212223445545544322 22789999999988776532 24444
Q ss_pred HHHhh---ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 95 ~~~~~---~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
..+.. ....+.++++++|+...+...++++++++... .. |+++++||+|.... .+..+.+.. +.+
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~---~i--~~~vv~tK~DKi~~--~~~~k~l~~-----v~~ 162 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL---GI--PVIVVLTKADKLKK--SERNKQLNK-----VAE 162 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc---CC--CeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence 44332 22348889999999988888899999888765 22 79999999999986 555443443 222
Q ss_pred HH-HhcCCe-EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 IL-QLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+ ...... ++. ..+..++.++++|...|.+.+.+
T Consensus 163 ~l~~~~~~~~~~~-----~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 163 ELKKPPPDDQWVV-----LFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HhcCCCCccceEE-----EEecccccCHHHHHHHHHHHhhc
Confidence 11 111111 122 22334557799999988877654
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=5.1e-19 Score=144.40 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
..|+|+|++++|||||+|.|+|... +-+...+.+|..+.+....+.+..+.++||+|+.+.. ++.+.+.+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 4899999999999999999999865 5555666666666666666888889999999998643 23344555555555
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
+...+|++||++|...+++..+....++++. ..+|+++|.||+|.... +... .++-..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~--e~~~-----------~efysl---- 137 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNLKA--EELA-----------YEFYSL---- 137 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh--hhhH-----------HHHHhc----
Confidence 6678899999999998999999998777762 12389999999998743 2221 111111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.+...++.||..+.++.+|++.+...++
T Consensus 138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 138 --GFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 2344567788899999999999998874
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=9.4e-19 Score=142.84 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+++|++|||||||+|.|+|... +.+.....|+..........++..+.++||||+.+.... ..+.+.+....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~---l~~~~~r~~~~ 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS---LEKAMVRCAWS 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc---HHHHHHHHHHH
Confidence 4999999999999999999999865 222333444433333333355667899999998653221 11223332223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|+++++++....+...+..+++.+... + .|.++++||+|+... .+....+ .......
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~~~~---------~l~~~~~- 189 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLNDIKA---------FLTENHP- 189 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHHHHH---------HHHhcCC-
Confidence 35678999999998766777666666655432 2 257789999998532 2222111 1111110
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 219 (228)
+...++.||.++.++++|++.|.+.+++ +++|+++
T Consensus 190 ---~~~i~~iSAktg~gv~eL~~~L~~~l~~--~~~~~~~ 224 (339)
T PRK15494 190 ---DSLLFPISALSGKNIDGLLEYITSKAKI--SPWLYAE 224 (339)
T ss_pred ---CcEEEEEeccCccCHHHHHHHHHHhCCC--CCCCCCC
Confidence 1123466888889999999999998887 3445443
No 12
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2.4e-18 Score=142.27 Aligned_cols=170 Identities=19% Similarity=0.145 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
-|+|+|.+|||||||+|+|++... .++.++.||........... ...+.++||||+.........+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH--- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH---
Confidence 699999999999999999998764 35556777766666554444 35699999999987544333333334333
Q ss_pred ccCCccEEEEEEeCC---CCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 100 AKDGIHAFLVVFSVT---NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 100 ~~~~~~~il~v~~~~---~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
..+++++++++|+. ..-...+ ..+++.+......-..+|.++|+||+|+... .++...++. +.+.
T Consensus 235 -i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~--------l~~~ 303 (390)
T PRK12298 235 -LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA--------IVEA 303 (390)
T ss_pred -HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH--------HHHH
Confidence 34679999999986 1112222 3344444432111112489999999998765 555444433 2222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.... ...+..||.++.++++|++.|.+.+++.
T Consensus 304 ~~~~----~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 304 LGWE----GPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred hCCC----CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 1110 0234567778899999999999999874
No 13
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.79 E-value=5.3e-18 Score=132.28 Aligned_cols=134 Identities=28% Similarity=0.331 Sum_probs=94.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.....+|+|+|++|+|||||+|+|+|......+.. .+.|....... ....+..+.++||||+.+..... ...+.+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~-~~~~g~~i~vIDTPGl~~~~~~~-~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVS-GTVDGFKLNIIDTPGLLESVMDQ-RVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEE-EEECCeEEEEEECCCcCcchhhH-HHHHHHHH
Confidence 44558999999999999999999999876433321 23343333332 23567789999999998764211 11122222
Q ss_pred HHhh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 96 CLGM--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 96 ~~~~--~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+.. ....+|+++++.+++ .+++..+.+.++.+...++...++++++|+||+|...+
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 2221 123689999998776 47788888999999998998877899999999998755
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=140.86 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=126.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+++|+|++++|||||+|+|+|+.. +-++..+.|+.........++++.+.++||.|+--.....+.. +.++-..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~-E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESV-EKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccce-EEEeehh
Confidence 458999999999999999999999976 4455666677766665555789999999999987655443321 1111111
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..+...++++++++|+..+++..+.+...++... ++ ++++++||||+...+...++++... ++....
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~-- 321 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLP-- 321 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhc--
Confidence 1234577999999999999999999988888764 33 5999999999876421333333333 333332
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
++-+...+..||.++.++.+|++.+.++..+...
T Consensus 322 ---~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 322 ---FLDFAPIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred ---cccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 2334455667888889999999999888877544
No 15
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=1.3e-17 Score=123.33 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeCCc-EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~-~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+|+|++|||||||+|+|++.... +...+. |......... ..+. .+.++||||+.+...........+.+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI- 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHHH-
Confidence 5899999999999999999986531 111122 2222222222 3343 7899999998654322212222222222
Q ss_pred hccCCccEEEEEEeCCCC-CCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 99 MAKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~-~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..+|++++++|++.. -+.... .+++.+.........+|+++++||+|+... ....+.+.. .....
T Consensus 77 ---~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~ 143 (170)
T cd01898 77 ---ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKEL 143 (170)
T ss_pred ---HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhC
Confidence 356999999999854 343332 344444443211123489999999998765 444433332 22221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ..+..++.++.+++++++.+.+.
T Consensus 144 ~~~-----~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 144 WGK-----PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCC-----CEEEEecCCCCCHHHHHHHHHhh
Confidence 111 12345667778999999887654
No 16
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=4.6e-17 Score=127.57 Aligned_cols=138 Identities=21% Similarity=0.225 Sum_probs=102.5
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
+.++-.+....|+|.|.+++|||||+++|++.+. .+.+++.||..-..+........+++|||||+.|....+.+..
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 4566677778999999999999999999999875 4677888888777766667778899999999999775444322
Q ss_pred HHHHHHHhhccCCccEEEEEEeCC--CCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~--~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~ 159 (228)
+ ..++.....-.++++|++|.+ .+++-+++ ..++.+...+. . |+++|+||+|.... +.+++
T Consensus 237 E--~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~---p~v~V~nK~D~~~~--e~~~~ 300 (346)
T COG1084 237 E--RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-A---PIVVVINKIDIADE--EKLEE 300 (346)
T ss_pred H--HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-C---CeEEEEecccccch--hHHHH
Confidence 2 122222223458999999998 45666655 46677777766 2 79999999998866 55544
No 17
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=6.4e-17 Score=131.36 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.|+|+|.++||||||+|+|++... .+..++.|+.......... +...+.++|+||+.+.......+...+.+.+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 589999999999999999998653 2344555655555544434 4567999999999875544333444444444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH-HhhccCCchHHHHHHhcC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQLCD 177 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 177 (228)
++.+++++|+|+++.-+..+.+ +.+.+......-..+|+++|+||+|+... ..+.. .++. ..+...
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~~--------~~~~~~ 302 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAAL--------ELAALG 302 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHHH--------HHHhcC
Confidence 3569999999998544555543 44444433111123489999999998754 33321 1111 111111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...+..||.++.++++|++.|.+.+.+.
T Consensus 303 ------~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 303 ------GPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred ------CCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 1224567778899999999999888763
No 18
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.76 E-value=5.4e-17 Score=119.89 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=95.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|.+|+|||||+|+|++..... ...+.++..............+.++||||+.+.......... ...+...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~ 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV---APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIE--MQAITAL 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc---CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHH--HHHHHHH
Confidence 79999999999999999999876421 112232222222222234567999999998643221111000 0111111
Q ss_pred cCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 101 KDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s---~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
....|++++++|++...+ .....++..+...+. ..|+++++||+|.... ..+.. .+. ..+.-
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~~- 141 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEELE- 141 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhhc-
Confidence 123588999999974433 222345555544332 2389999999999765 44433 111 11110
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
. ...+..||.++.+++++++.+.+.+
T Consensus 142 -~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 -G----EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -c----CceEEEEecccCCHHHHHHHHHHHh
Confidence 0 1234568888999999999887764
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=3.9e-17 Score=119.92 Aligned_cols=163 Identities=23% Similarity=0.263 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+++|++|+|||||+|.|+|...... .....++..............+.++||||+.+...... ..+......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG---ERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEec--cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH---HHHHHHHHH
Confidence 6899999999999999999999864221 11222332222222223446789999999876533221 112222233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc-cchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
....+|.++++++.....+......++.+... . .|+++++||+|... . ..+...+.. +.. ...
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~--~~~~~~~~~-----~~~---~~~- 142 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVKDK--EDLLPLLEK-----LKE---LGP- 142 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccccH--HHHHHHHHH-----HHh---ccC-
Confidence 44678999999999855555555555544332 1 27999999999873 3 444443333 211 111
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
....+..++.++.+++++++.|.+.
T Consensus 143 ----~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccCCChHHHHHHHHhh
Confidence 1122344566678899999888654
No 20
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=5.2e-17 Score=118.33 Aligned_cols=156 Identities=23% Similarity=0.235 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+.+|+++|++|+|||||+|+|++......+. ....+....... .......+.++||||+.+...... .+......
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEES-IDIGGIPVRLIDTAGIRETEDEIE---KIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEE-EEeCCEEEEEEECCCcCCCcchHH---HHHHHHHH
Confidence 4589999999999999999999876321111 112222222222 224566789999999877543211 11122222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++++++....+....+.+.. .. .+|+++++||+|.... ... .......
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~---~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~ 132 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL----PA---DKPIIVVLNKSDLLPD--SEL--------------LSLLAGK 132 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh----hc---CCCEEEEEEchhcCCc--ccc--------------ccccCCC
Confidence 33457899999999997677766654433 11 2379999999998765 322 0111111
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
..+..++.++.+++++++.|.+.+
T Consensus 133 ------~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 ------PIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ------ceEEEECCCCCCHHHHHHHHHHhh
Confidence 223456667789999999887754
No 21
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=3.5e-17 Score=113.70 Aligned_cols=116 Identities=24% Similarity=0.326 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+|+|.+|+|||||+|+|++......+.. ...|... ...........+.++||||+.+........ +.+..+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 689999999999999999998653222221 2333333 333333567778899999988754322211 2222333333
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~ 146 (228)
..+|++++++++...........++.+. . . +|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~-~--~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK---N-K--KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH---T-T--SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh---c-C--CCEEEEEcC
Confidence 6789999999987533334444445442 1 2 389999997
No 22
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=8.1e-17 Score=118.28 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|++|+|||||+|+|++..... ........|............+..+.++||||.. ++...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-----------~~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----------KFIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-----------HHHHHHHh
Confidence 68999999999999999999753210 0011122333333322221125679999999932 22222333
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|++++|+|++..........+..+.. .+. +|+++++||+|.... .......+. +.+..+....
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~- 138 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL- 138 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc-
Confidence 4557899999999975444444444443322 222 379999999998754 333322222 2222222100
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.....++.|+.++.+++++++.+..
T Consensus 139 --~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 --ADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred --CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0012345577788999999987754
No 23
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=8.5e-17 Score=130.51 Aligned_cols=166 Identities=18% Similarity=0.182 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC-cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
-.|+|+|.++||||||+|+|++... .+..++.|+............ ..+.++||||+.+.......+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~---~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc---cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH-
Confidence 3689999999999999999998753 133444454444333333344 67999999999765443333334444443
Q ss_pred hccCCccEEEEEEeCCCC---CCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 99 MAKDGIHAFLVVFSVTNR---FSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~---~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.+.+++++|+|++.. -+..+.. +.+.+......-..+|+++|+||+|+... ..+....+. +.+
T Consensus 234 ---erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~ 300 (329)
T TIGR02729 234 ---ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKK 300 (329)
T ss_pred ---HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHH
Confidence 356999999999743 2223322 33333332111123489999999998765 444333332 222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.... ..+..||.++.++++|++.|.+.+
T Consensus 301 ~~~~------~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 301 ALGK------PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HcCC------cEEEEEccCCcCHHHHHHHHHHHh
Confidence 2221 224457778899999999987765
No 24
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.5e-16 Score=134.80 Aligned_cols=173 Identities=21% Similarity=0.242 Sum_probs=110.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-C 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~ 96 (228)
...+|+|+|++|+|||||+|+|++..... ......++...........+..+.++||||+.......... +.+.. .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~--~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~-e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI--VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGV-EKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee--ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHH-HHHHHHH
Confidence 45899999999999999999999876422 22223344333322223466779999999987654433222 22111 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......+|++++|+|+..+.+..+.+.+..+... + +|+++++||+|.... .......+. +.......
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc
Confidence 11234577999999999988888888776665442 1 379999999998754 433333332 22221111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+...+..||.++.++.++++.+.+....
T Consensus 317 -----~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 317 -----DYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -----cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 12234556788889999999988776654
No 25
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=4.8e-17 Score=118.58 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=96.0
Q ss_pred EEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 027090 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (228)
Q Consensus 23 ~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (228)
+++|.+|+|||||+|.|++....... ....++...........+..+.++||||+.+... ...+.+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE--DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec--CCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 58999999999999999987532111 2222332222222234566789999999876532 122233333333445
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEE
Q 027090 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (228)
Q Consensus 103 ~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
.+|+++++++.....+..+....+.+... + .|+++++||+|.... ...... +... ..
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~~~-----------~~~~-~~---- 132 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEAAE-----------FYSL-GF---- 132 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHHHH-----------HHhc-CC----
Confidence 77999999999866666666555555432 1 379999999998765 333111 1111 10
Q ss_pred eeCCCcccccchHHHHHHHHHHHHH
Q 027090 183 FDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
...+..++.++.+++++++.+.+.
T Consensus 133 -~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 133 -GEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -CCeEEEecccCCCHHHHHHHHHhh
Confidence 012345666778999999988754
No 26
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=6.2e-16 Score=117.12 Aligned_cols=170 Identities=14% Similarity=0.243 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|.+|+|||||+|+|++...........+.|....... ....+.++||||+......... .+++...+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~-~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEE-KEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchH-HHHHHHHH
Confidence 457899999999999999999998652111111112232222221 1357899999998754332221 12222222
Q ss_pred h---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 98 ~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
. .....++.++++++...+.+..+.+.++.+.. . . .|+++++||+|.... .+....... +.+...
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~--~--~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y--G--IPVLIVLTKADKLKK--GERKKQLKK-----VRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c--C--CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence 1 22345678888888876666665554444432 1 1 268999999998765 444433332 323332
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... ..++.++.++.+++++++.|.+++.+
T Consensus 166 ~~~~------~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 166 FGDD------EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred hcCC------ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 2111 22245777788999999999888765
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=2.1e-16 Score=133.59 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=110.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~- 96 (228)
...+++++|.+|+|||||+|+|++..... ......|+..........++..+.++||||+.......+.. +.+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~-e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI--VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGV-EKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee--cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhH-HHHHHHH
Confidence 34689999999999999999999876421 22223333333222222456679999999987655433222 111111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......+|++++|+|+..+.+..+.+.+..+... . +|+++++||+|+... ......+.+. +.......
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~ 316 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL 316 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence 11234678999999999988888887766655432 2 379999999998722 0334343333 22222111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. +...+..||.++.+++++++.+.+....
T Consensus 317 ~-----~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 317 D-----FAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred C-----CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 1233456888889999999998887765
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=2.2e-16 Score=116.81 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=98.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~ 97 (228)
..+|+++|.+|+|||||+|+|++........ ...++...........+..+.++||||+.+........ +.+. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD--IAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC--CCCCccCceeeEEEECCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence 3689999999999999999999875321111 12222111111122355668899999987653222211 1111 111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++++++....+......+..+... . +|+++++||+|.............+. +.+.....
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~- 147 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFL- 147 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccc-
Confidence 1234577999999999877776665554444321 2 37999999999875410112221221 11111111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.....+..++.++.++.++++.+.+.
T Consensus 148 ----~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 148 ----DYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----cCCceEEEeccCCCCHHHHHHHHHHh
Confidence 11233455777889999999887654
No 29
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=1.7e-16 Score=121.10 Aligned_cols=163 Identities=24% Similarity=0.211 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+|+|++|||||||+|.|++....... ....|...............+.++||||+.+.... ...+.+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTL 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHH
Confidence 3469999999999999999999997642111 11222222222222223347999999998653221 1112222222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.....+|++++++|++...+..... +.+.+....... +|+++|+||+|.... .... . ....-
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~ 178 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAG 178 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcC
Confidence 2245789999999998655555443 334444332222 389999999998765 3332 0 01100
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
....+..|+.++.+++++++.|.+.
T Consensus 179 ------~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 179 ------RPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ------CCceEEEEcCCCCCHHHHHHHHHhh
Confidence 1123345777788999999888664
No 30
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.6e-17 Score=126.11 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=109.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..-+++|+|.+|+|||||||+|++.+. ..+..-+.+++........+....+.++||||+++....+.+ ....+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~~~ 111 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQLY 111 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHHHH
Confidence 446888999999999999999996543 112222333333222223355677999999999998765543 33444
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc----------hhhHHHHhhccCCc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH----------EKTLEDFLGHECPK 167 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~----------~~~~~~~~~~~~~~ 167 (228)
....++.|.+++++++.++.=.-+...+.-+.....+ +++++++|.+|...+. ...++.+++. +..
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~ 187 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAE 187 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHH
Confidence 4444577999999999855433334433433333333 3799999999977551 0112222221 112
Q ss_pred hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCC
Q 027090 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPY 216 (228)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 216 (228)
.+.+..+...++ +..+....+++++|..++..+++.+...+.
T Consensus 188 ~~~~~~q~V~pV-------~~~~~r~~wgl~~l~~ali~~lp~e~rs~~ 229 (296)
T COG3596 188 ALGRLFQEVKPV-------VAVSGRLPWGLKELVRALITALPVEARSPL 229 (296)
T ss_pred HHHHHHhhcCCe-------EEeccccCccHHHHHHHHHHhCcccccchh
Confidence 222333322222 222345569999999999999987655443
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=130.32 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=115.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
..-..+.+++|+|++++|||||+|+|++.+. ..++..+.||..........++.++.++||+|+.+.....+... +
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iG--I 287 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIG--I 287 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHH--H
Confidence 3345678999999999999999999999976 66777788887776666668899999999999987544333221 1
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++. .....+|.+++++|++..++..+...++ .. +..+|+++|.||.|+... ......
T Consensus 288 eRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~---~~~~~~i~v~NK~DL~~~--~~~~~~------------- 345 (454)
T COG0486 288 ERAK-KAIEEADLVLFVLDASQPLDKEDLALIE---LL---PKKKPIIVVLNKADLVSK--IELESE------------- 345 (454)
T ss_pred HHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH---hc---ccCCCEEEEEechhcccc--cccchh-------------
Confidence 2222 2345779999999999667777777666 12 222389999999999876 322111
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.... ...+..|+.++.+++.|.+.|...+...
T Consensus 346 ~~~~~-----~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 346 KLANG-----DAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hccCC-----CceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 00000 1123446666677777777777766654
No 32
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=2.8e-17 Score=123.82 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCccccc----------------CCCCCcceeeEeEeee-eeCCcEEEEEeCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF 80 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~ 80 (228)
+-++|+++|+.++|||||+++|++....... ......|......... ......+.++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3478999999999999999999865421000 0112344443333322 2567789999999932
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~ 160 (228)
++...+......+|++++|+++..+......+.+..+... .. |+++++||+|.. . ..+.+.
T Consensus 82 -----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~---~~--p~ivvlNK~D~~-~--~~~~~~ 142 (188)
T PF00009_consen 82 -----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL---GI--PIIVVLNKMDLI-E--KELEEI 142 (188)
T ss_dssp -----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT---T---SEEEEEETCTSS-H--HHHHHH
T ss_pred -----------ceeecccceecccccceeeeeccccccccccccccccccc---cc--ceEEeeeeccch-h--hhHHHH
Confidence 2333333345577999999999888888888877777554 22 699999999998 3 455555
Q ss_pred hhccCCchHH-HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
+++ +. .+.+.....--.....++.|+.++.++.+|++.|.+.+|
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 555 33 332222110000001234577788999999999988775
No 33
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=4.5e-16 Score=129.54 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.|+|+|.++||||||||+|++... ....++.|+........... ...+.++|+||+.........+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~---kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi-- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP---KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI-- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC---ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--
Confidence 799999999999999999998763 12344555554444433334 677999999999764433333334444433
Q ss_pred ccCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 100 AKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~---~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.+.+++++|+|++.. -+..+ ..+.+.+......-..+|.++|+||+|+... .+. +.++.+.
T Consensus 235 --er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~-----------l~~l~~~ 299 (424)
T PRK12297 235 --ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EEN-----------LEEFKEK 299 (424)
T ss_pred --hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHH-----------HHHHHHH
Confidence 356999999999632 22222 2344444433211123589999999997432 211 1112222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
... ..+..||.++.++++|++.|.+.+.+..
T Consensus 300 l~~------~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 300 LGP------KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred hCC------cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 221 2234577788999999999998887753
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=7.2e-16 Score=131.44 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|++|+|||||+|+|++.... .......|+..........++..+.++||||+......... .+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~--~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG--HEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch--HHHHHHH
Confidence 3579999999999999999999988641 12222333332222222245667889999998543222111 1222222
Q ss_pred h--hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~--~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
. .....+|++++|+|++.+.+..+.+++..+.. .. +|+++|+||+|+... .......+. +.+....
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~---~~--~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~ 353 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE---AG--RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ 353 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence 1 23467899999999998888888776655543 12 389999999998754 222211111 1111111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.. +...+..||.++.+++++++.+.+.+....
T Consensus 354 ~~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 354 VP-----WAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 00 112245688899999999999988887543
No 35
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=4.1e-16 Score=116.59 Aligned_cols=136 Identities=18% Similarity=0.278 Sum_probs=85.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-CcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
+.....+|+|+|++|+|||||+|+|++.... ...... ..|.....+.. + ..+.++||||+.......... .++
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~-~~~ 87 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEK-EKW 87 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHH-HHH
Confidence 3455679999999999999999999987521 111111 23333333321 2 368999999987654332221 223
Q ss_pred HHHHh---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 94 VKCLG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 94 ~~~~~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
...+. .....++++++++++..+++..+.+.+..+... .+|+++++||+|.... ......+..
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~--~~~~~~~~~ 153 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK--SELNKQLKK 153 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH--HHHHHHHHH
Confidence 22221 122356899999999878888888766655432 2379999999998755 444444443
No 36
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=1.9e-16 Score=120.70 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeee--------------------------------eC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--------------------------------KD 67 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--------------------------------~~ 67 (228)
+|+++|++|+|||||+.+|++... ...+......+.......... ..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 799999999999999999988732 111111222232222111110 01
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s~~~~~~l~~~~~~~~~~~~~~~llv~~~ 146 (228)
...+.++||||. ..+...+......+|++++|+++... ........+..+.. .+. +|+++++||
T Consensus 82 ~~~i~~iDtPG~-----------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK 146 (203)
T cd01888 82 VRHVSFVDCPGH-----------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNK 146 (203)
T ss_pred ccEEEEEECCCh-----------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEc
Confidence 156899999992 22333333344577999999999842 33333444443322 222 378999999
Q ss_pred CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+|+... ......++. +++..+. ........+..||.++.++++|++.+.+.+++
T Consensus 147 ~Dl~~~--~~~~~~~~~-----i~~~~~~---~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 147 IDLVKE--EQALENYEQ-----IKKFVKG---TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred hhccCH--HHHHHHHHH-----HHHHHhc---cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 998764 444433333 3332221 10011123456778889999999999887765
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=1.6e-16 Score=119.80 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
++|+|+|++|+|||||++.+++..... ....|...........+ ...+.++||||... +....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----ccCCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence 479999999999999999999876522 22233322222111122 24689999999432 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCc--hHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK--PLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 173 (228)
...+..++++++|+++++.-|.... .|+..+...... .|+++|.||+|+... ......+...... ...+..
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~---~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPG---VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence 2345678999999999866666544 366666654322 389999999998765 4433322221111 111222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.+...-. -..+..||.++.+++++++.+.+.+..
T Consensus 141 ~~~~~~~~--~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 141 AVAKRINA--LRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHcCC--CEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 22211100 011345778889999999988877664
No 38
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=4e-16 Score=131.95 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+|+|++|+|||||+|.|++... ........++.........+.+..+.++||||+.... ..+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---DGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---hhHHHHHHHHHHHH
Confidence 489999999999999999998763 1122222233333333334567789999999986432 22334444444455
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
...+|++++++|+..+++..+....+++... . +|+++|.||+|.... ... ..++...
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~---~--~piilVvNK~D~~~~--~~~-----------~~~~~~l----- 132 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS---G--KPVILVANKIDGKKE--DAV-----------AAEFYSL----- 132 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh---C--CCEEEEEECccCCcc--ccc-----------HHHHHhc-----
Confidence 5678999999999888888887776766542 2 379999999998754 321 1111111
Q ss_pred EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+...+..||.++.++.++++.+.+.+++.
T Consensus 133 -g~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 133 -GFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred -CCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 112334567778899999999998887653
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=6.1e-16 Score=114.14 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.|+|+|++|+|||||+|+|++...... .....|........... .+..+.++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 589999999999999999998764221 11223333332322221 356789999999432 112222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++++++++.........+..+... . .|+++++||+|........+...+.. .......
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ivv~NK~Dl~~~~~~~~~~~~~~--------~~~~~~~ 135 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA---N--VPFIVALNKIDKPNANPERVKNELSE--------LGLQGED 135 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc---C--CCEEEEEEceecccccHHHHHHHHHH--------hhccccc
Confidence 334577999999999865555555545444321 2 37999999999864311222222221 1100000
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.+......+..++.++.++++|++.|.++..
T Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 136 EWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0000112345677788999999999887654
No 40
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.1e-15 Score=115.34 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=98.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+|+|+.|||||||++.+++...... ....|+...... ....+ ...+.++||||- ..+....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG---NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-----------ERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc---CcCCcccceeEEEEEEECCEEEEEEEEeCCCc-----------HHHHHhh
Confidence 799999999999999999987764211 112222211111 11122 235789999992 1222223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++|+++.-|... ..++..+....... .|+++++||.|+... +.+.. .....+.+..
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~~~~-------~~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE--RVVKR-------EDGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc--cccCH-------HHHHHHHHHc
Confidence 334567899999999986555543 33555665544323 389999999998643 22211 0122222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 214 (228)
.. ..+..|+.++.+++++++.|.+.+.+....
T Consensus 137 ~~------~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 137 GV------PFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred CC------eEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 21 123457778899999999998888876443
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.4e-15 Score=128.31 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
-.|+|+|.++||||||||+|++... ....++.|+..............+.++||||+.+.......+..++.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp---kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP---KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc---cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 4699999999999999999998754 23444556555444444456678999999999765443333334444433
Q ss_pred ccCCccEEEEEEeCCCC----CCHHHHH-HHHHHHHHhC---------ccccccEEEEEeCCCCCccchhhHHHHhhccC
Q 027090 100 AKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~----~s~~~~~-~l~~~~~~~~---------~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~ 165 (228)
.+.+++++|+|++.. -...+.. +.+.+..... ....+|+++++||+|+... ..+.+.+..
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~~-- 308 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVRP-- 308 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHHH--
Confidence 456999999999621 1122222 2222222211 1123589999999998754 444433332
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+ ..... ..+..||.++.++++|++.|.+++...
T Consensus 309 -----~l-~~~g~------~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 309 -----EL-EARGW------PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred -----HH-HHcCC------eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 11 11111 224457777899999999998888764
No 42
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.71 E-value=5.1e-16 Score=114.44 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=93.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (228)
|+++|+.|+|||||++.+.+..... ....|........ ......+.++||||-... ........
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~----~~~pt~g~~~~~i-~~~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGFNSVAI-PTQDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc----cccccCCcceEEE-eeCCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 7899999999999999999875421 1222322222222 245667899999994321 11222334
Q ss_pred CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
+.+|++++|+|.++..+.... .++..+... ....|++++.||.|.... ..+..+..... ...+.+.....+
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~--~~~~~i~~~~~---~~~~~~~~~~~~ 137 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAA--RSVQEIHKELE---LEPIARGRRWIL 137 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCC--CCHHHHHHHhC---ChhhcCCCceEE
Confidence 577999999999855444332 233333221 123489999999998655 44443222200 122222222222
Q ss_pred EEeeCCCcccccchHHHHHHHHHHH
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
+-.......++.+.+++.++++.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 2234455668888999999998664
No 43
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=7.4e-16 Score=126.13 Aligned_cols=161 Identities=22% Similarity=0.177 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|.+|+|||||+|+|++....... ....|.+.........++..+.++||||+.... +.. ..+.+...+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~-lie~f~~tl- 263 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHE-LVAAFRATL- 263 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCcccccC-CHH-HHHHHHHHH-
Confidence 368999999999999999999998642221 122333333333332345689999999984321 111 112222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.....+|++++|+|+++..+..+.. +.+++... +.. .+|+++|+||+|.... ..+.. .... .
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~~--~~v~~------------~~~~-~ 326 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLDE--PRIER------------LEEG-Y 326 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCCh--HhHHH------------HHhC-C
Confidence 2345789999999998666655443 33344332 311 2389999999998654 33221 1000 0
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
...+..||.++.++++|++.|.+.
T Consensus 327 ------~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 327 ------PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ------CCEEEEEccCCCCHHHHHHHHHhh
Confidence 112456788889999999988654
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=5.1e-16 Score=113.70 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||+|++++.... .....|...........++ ..+.++||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc-----------hHHHH
Confidence 58999999999999999999987641 1222232222211111233 3477899999432 22222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......++++++++.++.-+.... .++..+...... ...|++++.||+|.... ........ ++.+..
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~~~--------~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQGQ--------DLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHHHH--------HHHHHh
Confidence 2334567999999999854444433 244444433221 12489999999998653 21111111 122211
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.. ..+..|+.++.+++++++.+.+.
T Consensus 136 ~~------~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GI------PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CC------eEEEecCCCCCCHHHHHHHHHHH
Confidence 11 12345777889999999887654
No 45
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.71 E-value=2e-15 Score=112.11 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|..|+|||||++.+.+.... .....|............+ ..+.++||||... +....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP----DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE-----------FTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC----CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh-----------hHHHh
Confidence 58999999999999999999877652 1122333222221112233 3588999999332 22233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......|+++++++++++.|..... ++..+..... ....|++++.||+|+... +.+.... ...+.+..
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~ 137 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF 137 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence 34455779999999999777777654 4444444322 122489999999998644 3322110 11222221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+. .....||.++.+++++++.+.+.+.+
T Consensus 138 ~~------~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 138 NC------PFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CC------EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11 12245777789999999888765554
No 46
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=1.3e-15 Score=115.96 Aligned_cols=173 Identities=19% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-- 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-- 95 (228)
...+|+++|++|+|||||+|+|++.... .+. ..+.|.... ... ...+.++||||++..........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYD---WGDFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEe---ecceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4578999999999999999999987642 211 112222221 111 1258999999986544332222122222
Q ss_pred --HHhhccCCccEEEEEEeCCCCCCH-----------HHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090 96 --CLGMAKDGIHAFLVVFSVTNRFSQ-----------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 96 --~~~~~~~~~~~il~v~~~~~~~s~-----------~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~ 162 (228)
++......+++++++++....... .+...+..+.. .. .|+++++||+|.... . .+...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~--~--~~~~~ 151 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKN--R--DEVLD 151 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCc--H--HHHHH
Confidence 233234567899999998632111 11222222221 12 389999999998654 3 11111
Q ss_pred ccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 163 HECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
. +.+..... ..+... ...+..||.++ +++++++.|.+.+.+...
T Consensus 152 ~-----~~~~~~~~-~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 152 E-----IAERLGLY-PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred H-----HHHHhcCC-ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 1 11111110 011000 12356788889 999999999888776544
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=4.8e-16 Score=114.58 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+++|++|+|||||++++.+...... ...+.+.+....... ..+ ..+.++||||. ..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~-----------~~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLE-IEGKRVKLQIWDTAGQ-----------ERFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEE-ECCEEEEEEEEECCCh-----------HHHHHH
Confidence 37999999999999999999987654211 111222222222222 233 36789999992 122233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++++++++.-|.... .++..+....... .|+++|.||+|+... +.... + ....+.+.
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~--~~~~~--~-----~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ--REVLF--E-----EACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCH--H-----HHHHHHHH
Confidence 33445678999999999865555443 4555555432222 379999999998654 22110 0 12222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ...+..|+.++.+++++++.+.+.
T Consensus 138 ~~~-----~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 138 NGM-----LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cCC-----cEEEEEECCCCCCHHHHHHHHHHh
Confidence 211 112355777889999999887653
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=7.8e-16 Score=131.24 Aligned_cols=164 Identities=21% Similarity=0.183 Sum_probs=105.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|++|||||||+|.|++....... .....|.+.... .....+..+.++||||+.... ......+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~-~~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSY-DAEWNGRRFTVVDTGGWEPDA---KGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEE-EEEECCcEEEEEeCCCcCCcc---hhHHHHHHHHH
Confidence 3468999999999999999999987532111 122333333332 233566779999999976322 11223333334
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
..+...+|++++|+|++.+.+..+..+...+... .+|+++|.||+|.... ... ..+....
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~--~~~-----------~~~~~~~-- 171 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG--EAD-----------AAALWSL-- 171 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc--chh-----------hHHHHhc--
Confidence 4455678999999999988887776666666531 2389999999998543 110 0011110
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. +...+..||.++.++.+|++.|.+.+++
T Consensus 172 g----~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 G----LGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred C----CCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 0 1112456888899999999999887765
No 49
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.70 E-value=5.8e-16 Score=116.35 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCC--------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~ 86 (228)
+|+|+|..|+|||||+|+|++......... ....+........ ......+.++||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHHH----
Confidence 489999999999999999998765321100 0112222222211 234567899999995431
Q ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC
Q 027090 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (228)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~ 166 (228)
...+.. ....+|++++++++....+......+..+.. . .+|+++++||+|.... ..+....+.
T Consensus 76 ---~~~~~~----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~---~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SSEVIR----GLSVSDGAILVVDANEGVQPQTREHLRIARE--G---GLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HHHHHH----HHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--C---CCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 122222 2346799999999986666665555544433 1 2389999999999864 444443333
Q ss_pred chHHHHHHhcCC-----eE---EEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 167 KPLKEILQLCDN-----RC---VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 167 ~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
+.+..+.... .. ......+..|+.++.+++++++.+.+.++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3223222110 00 01122345677788999999999888764
No 50
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=6.4e-16 Score=113.52 Aligned_cols=154 Identities=18% Similarity=0.063 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|.+|||||||++.+.+...... ...+....... ....+ ...+.++||||.. .+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~ 66 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ----QLSTYALTLYKHNAKFEGKTILVDFWDTAGQE-----------RFQTMH 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----cCCceeeEEEEEEEEECCEEEEEEEEeCCCch-----------hhhhhh
Confidence 799999999999999999987654211 12222111111 11122 3357899999932 222233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......|++++++|++++.+.... .++..+...... .|+++++||+|+... . ... ...+.+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~~~ 131 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE---IPCIVVANKIDLDPS--V-TQK---------KFNFAEKH 131 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEECccCchh--H-HHH---------HHHHHHHc
Confidence 3445678999999999866565543 456666543222 389999999997432 1 111 11111111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. ..+..|+.++.+++++++.+.+.+.+
T Consensus 132 ~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 132 NL------PLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CC------eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11 12345777889999999988776654
No 51
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.70 E-value=2.5e-15 Score=113.94 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC---cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+|+|++|+|||||+|+|+|...+..+..... .|.....+.. .....+.++||||+.+..... +++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~----~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPP----DDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCH----HHHHHH
Confidence 5799999999999999999999765332221111 1211111111 123468999999988654332 222222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchh-------hHHHHhhccCCchH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL 169 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~-------~~~~~~~~~~~~~~ 169 (228)
+ .....|+++++.+ .+++..+..+++.+... + +++++|+||+|...+... .....++.... .+
T Consensus 76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~-~~ 145 (197)
T cd04104 76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD-NC 145 (197)
T ss_pred h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHH-HH
Confidence 2 2456788888754 47888898888888764 2 269999999998543101 02233333111 23
Q ss_pred HHHHHh---cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 170 KEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.+.... ....+++...... .+.++..|.+.|...++++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHHH
Confidence 333322 2233444333321 34789999999999988854
No 52
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.69 E-value=2.4e-15 Score=114.22 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.|+++|..|+|||||++.+..... ......|. +....... .++ ..+.++||+|-. .+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f----~~~~~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe-----------~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF----CEACKSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQE-----------RFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC----CCcCCCcceeEEEEEEEE-ECCEEEEEEEEeCCCch-----------hhHHH
Confidence 589999999999999999987654 11222332 22222222 233 458999999922 22223
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
....++.+|++++|+|++++-|..... |+..+....... .|+++|.||+|+... +++.... ..++.+.
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~ 134 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQ 134 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHh
Confidence 334566889999999999777776654 555554443323 389999999998644 3332111 1112211
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... +. ....||.++.++.++++.+.+.+..
T Consensus 135 ~~~-~~----~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 135 ITG-MR----FCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred cCC-CE----EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 111 11 1245788889999999888776654
No 53
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=1.4e-15 Score=114.38 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=101.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+++|..|+|||||+..+.+... ........+.+....... .++ ..+.++||+|.. .+...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQG-----------RFCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence 37999999999999999999987543 111111222222212121 223 458899999932 22233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+.+|++++|+|++++.|..... |++.+...... .|++||.||.|+... +.+.. ...+++.+.
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~---~piilVGNK~DL~~~--~~v~~-------~~~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG---VPKILVGNRLHLAFK--RQVAT-------EQAQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccchhc--cCCCH-------HHHHHHHHH
Confidence 334557889999999999777777654 66666554332 389999999998643 22210 112223332
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
.... ....||.++.+++++++.+.+.+..+.+
T Consensus 140 ~~~~------~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 140 NGMT------FFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred cCCE------EEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 2211 2245778889999999999876665433
No 54
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=8.8e-16 Score=113.29 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+|+|++|+|||||++.|++......+ ......|........ ...+..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI-EVGNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE-EECCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999875432111 111222322222222 24567899999999432 222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.....+|++++++|+...-+.... .++..+..... ....|+++++||+|.... .......+. +....+...
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~~ 140 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEIG 140 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHH-----hcccccccc
Confidence 334678999999998743222221 22222222111 112389999999998654 322221111 111110011
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.. ....+..||.++.++++++++|.+
T Consensus 141 ~~---~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 141 RR---DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CC---ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 00 012345678888999999988753
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=1.5e-15 Score=111.87 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|++|+|||||++++++..... ....|.... ...... .....+.++||||.. ++....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS----KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP-----------EYLEVR 66 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----CCCCccceeEEEEEEEECCeEEEEEEEECCccH-----------HHHHHH
Confidence 79999999999999999999887522 222222221 111111 123458899999942 122233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc---cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~---~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
......++++++++|++++-+.... .++..+.....+ ....|+++|.||+|.... ..+.. .......
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~ 137 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSE-------DEGRLWA 137 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCH-------HHHHHHH
Confidence 3345678999999999855444433 456666554432 122489999999998632 11110 0011122
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
......+ +..|+.++.++.++++.|.+.+
T Consensus 138 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 138 ESKGFKY------FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHcCCeE------EEEECCCCCCHHHHHHHHHHHH
Confidence 2222111 3456777899999999887654
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.4e-15 Score=128.89 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|.+|+|||||+|.|++........ ..+.|.+.. .......+..+.++||||+.+... .....+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~-~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRI-YGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccce-EEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence 479999999999999999999876411111 122333333 233335667899999999876221 122333343444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
+...+|++++++++..+++..+....+++... . +|+++++||+|.... ... ..++...
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~---~--~piilv~NK~D~~~~--~~~-----------~~~~~~l---- 134 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS---N--KPVILVVNKVDGPDE--EAD-----------AYEFYSL---- 134 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CcEEEEEECccCccc--hhh-----------HHHHHhc----
Confidence 45678999999999877888777666666543 2 379999999996532 111 1111111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.+...+..|+.++.++.++++.|...
T Consensus 135 --g~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 135 --GLGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred --CCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 01123456778889999999888763
No 57
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=1.1e-15 Score=113.57 Aligned_cols=162 Identities=20% Similarity=0.133 Sum_probs=90.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 027090 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (228)
Q Consensus 24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (228)
|+|++|||||||+|+|++.... ......++........... +..+.++||||+.+.....+.....+.. ...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK---VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc---ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999998641 1222223222222222244 6789999999986533222221122222 234
Q ss_pred CccEEEEEEeCCCCC------CHHHHH-HHHHHHHHhCc-----cccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 103 GIHAFLVVFSVTNRF------SQEEET-AVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 103 ~~~~il~v~~~~~~~------s~~~~~-~l~~~~~~~~~-----~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.+|++++++|+.... +..+.. +...+...... ...+|+++++||+|.... .........
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~------- 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVR------- 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHH-------
Confidence 579999999998442 233322 23333222110 012489999999999765 444432110
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
....... ...+..++.++.+++++++.+...
T Consensus 145 ~~~~~~~------~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEG------AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCC------CCEEEEehhhhcCHHHHHHHHHhh
Confidence 1111111 112345667778999999877653
No 58
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.69 E-value=2.7e-15 Score=111.70 Aligned_cols=163 Identities=19% Similarity=0.126 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|+|||||++.+..... ......|............+ ..+.++||+|... +....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc-----------hhhhh
Confidence 5899999999999999999987654 22233343322221111233 4578999999432 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK 170 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~ 170 (228)
......+|++++|++++++-|.... .|+..+.....+ .|++++.||+|+... ..+.+.+.... .+...
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~---~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK---TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence 3345678999999999876666654 355555543322 389999999998654 34333332211 11122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
++.+.... + .....||.++.+++++++.+.+.
T Consensus 142 ~~a~~~~~-~----~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 142 KLARDLKA-V----KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHhCC-c----EEEEecCCCCCCHHHHHHHHHHH
Confidence 22222111 1 11345778889999999877653
No 59
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=1.4e-15 Score=114.81 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|.+|+|||||++.+.+.... . ....|............+ ..+.++||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--E--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c--cCCCchHhhEEEEEEECCEEEEEEEEECCCchh-----------hHHHHH
Confidence 4899999999999999999876541 1 112222211111111233 3478999999422 222223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..+..+|+++++++.++..|.... .++..+...... ....|++++.||+|+... +.+... ...++....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE-------EGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH-------HHHHHHHHh
Confidence 345577999999999865555543 355555443221 122489999999998643 222110 011222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
... .+..||.++.+++++++.+.+.+.++..
T Consensus 137 ~~~------~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 137 GCE------FIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred CCE------EEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 211 2345777889999999988877665433
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=1.6e-15 Score=111.46 Aligned_cols=158 Identities=22% Similarity=0.164 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||++.+++... ......|...........++ ..+.++||||..+. ....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-----------SAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-----------hHHH
Confidence 6899999999999999999987754 22222232221111111233 35788999995432 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......|++++++++++.-+.... .++..+....... ..|++++.||+|.... ..+... ...++.+..
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~piiiv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 137 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRD-EFPMILVGNKADLEHQ--RKVSRE-------EGQELARKL 137 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeeCcccccc--ceecHH-------HHHHHHHHc
Confidence 2233467999999999855444443 2444444332211 2389999999998654 322110 011222221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.. ..+..||.++.+++++++.+.+.+
T Consensus 138 ~~------~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 138 KI------PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CC------cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 11 124557778899999999887654
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=3.1e-15 Score=133.20 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|++|+|||||+|+|++... ..+.....|+..........++..+.++||||+......... .+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~--~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTG--AEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchh--HHHHHHH
Confidence 347999999999999999999998863 112223334333333323356677889999998653322211 2222222
Q ss_pred h--hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~--~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
. .+.+.+|++++|+|++.+.+..+...+..+... . +|+++|+||+|+... .....+.+. +......
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence 1 234678999999999988888887766555331 2 389999999998754 332221111 1111111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
. .+...+..||.++.++++|++.+.+..+..
T Consensus 593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 0 112234468889999999999998888763
No 62
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=1.6e-15 Score=112.32 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|..|||||||++.+.+... . ....|........ ......+.++||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~----~-~~~~T~~~~~~~~-~~~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF----M-QPIPTIGFNVETV-EYKNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC----C-CcCCcCceeEEEE-EECCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999998743 1 1223332222222 245667999999995432 1122223
Q ss_pred cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh-cCC
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CDN 178 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 178 (228)
...+|++++|+|.+.+-+..+. .++..+..... ....|++++.||+|+... ....+..+. + ...+. +..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence 3567999999999854444333 23333322111 111389999999998643 222221111 0 01111 111
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+.+ ...||.++.+++++++.|.+.+.++
T Consensus 135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 135 SWYI----QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cEEE----EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 2222 2447888899999999998777664
No 63
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=1.1e-15 Score=129.26 Aligned_cols=158 Identities=21% Similarity=0.239 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+.+|+++|.+|+|||||+|+|++.... .+.....|+..........++..+.++||||+.+.. ......-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a--~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA--IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 4579999999999999999999987631 122223333322222223467789999999986532 11111111111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++|+|++.+.+..+...+.. ... +|+++|+||+|+... .... . ...
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~---~piiiV~NK~DL~~~--~~~~---~------------~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LKD---KPVIVVLNKADLTGE--IDLE---E------------ENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCC---CCcEEEEEhhhcccc--chhh---h------------ccC
Confidence 223457899999999987777665443322 122 389999999998654 2221 0 000
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...+..|+.++.++++|++.|.+.+..
T Consensus 345 ------~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 ------KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ------CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 112345666777888888888777654
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=1.3e-15 Score=111.89 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|||||||++.+.+.... .....|+..........++ ..+.++||||.... ....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-----------TAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-----------chHH
Confidence 58999999999999999999876541 1122232211111111233 34778999994322 1222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+..|++++++++++.-+.... .+++.+...... ...|++++.||+|+... +.+.. . ....+.+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSR--E-----EGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecH--H-----HHHHHHHHc
Confidence 2334577999999999855555443 344444443221 22489999999998643 22211 0 011222221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
. ...+..||.++.++.++++.+.+.
T Consensus 137 ~------~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 G------CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred C------CeEEEecCCCCCCHHHHHHHHHHh
Confidence 1 122455777889999999888654
No 65
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.68 E-value=7e-15 Score=108.39 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+++|+.|+|||||++.+++.... .....|.. ........ .....+.++||||.. .+...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~-----------~~~~~ 66 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE-----------RYRTI 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH-----------HHHHH
Confidence 58999999999999999999987651 11122222 22112111 122458999999932 22223
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+.+|++++++|.++.-+.... .+++.+...... ..|++++.||+|+... +.+.. ....++.+.
T Consensus 67 ~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 135 (165)
T cd01865 67 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE--RVVSS-------ERGRQLADQ 135 (165)
T ss_pred HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHHH
Confidence 33446788999999999855444433 345554433222 2379999999998654 32110 011222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... ....||.++.++.++++.+.+.+.+
T Consensus 136 ~~~~------~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 136 LGFE------FFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred cCCE------EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2211 2345777889999999988776543
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.68 E-value=1.8e-15 Score=111.43 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|||||||++++++.... .......+.+....... ..+ ..+.++||||.. ++....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN--LDSKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHHH
Confidence 58999999999999999999987641 11122222222222222 223 357899999932 222223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+..+++++++|+++..+.... +++..+....... .|++++.||+|.... +.+.. +....+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHL--RAVPT-------EEAKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--ccCCH-------HHHHHHHHHc
Confidence 3344677999999999855555543 3555555543322 389999999998643 22110 0111222211
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
. . ..+..|+.++.+++++++.+...
T Consensus 139 ~-~-----~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 G-L-----SFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred C-C-----EEEEEECCCCCCHHHHHHHHHHH
Confidence 1 1 12345777889999999887654
No 67
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=1.8e-15 Score=113.86 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+|+|+.|+|||||++.+.+.... .....|....... .... ....+.++||||.. ++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP----EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC----CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence 37999999999999999999987652 2223333222221 1111 12358999999932 22223
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++++|++++-|..... |+..+.... .. .|++++.||.|+... ......+. .....++..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence 333456889999999998666666542 454444332 22 389999999998643 21111010 111222332
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..... ..+..|+.++.++.++++.+.+.+...
T Consensus 138 ~~~~~-----~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 138 KQGAF-----AYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HcCCc-----EEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 22211 123457778899999999887777654
No 68
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.68 E-value=1.6e-15 Score=111.97 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+++|+.|+|||||++.+++.... ...+.|....... ....+ ...+.++||||. ..+...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~~ 67 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ-----------ERFRAV 67 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEECCEEEEEEEEECCCc-----------HHHHHH
Confidence 58999999999999999999977541 1222232222111 11122 235789999992 122233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+.+|++++|+|++++-|.... .++..+....... .|++++.||+|+... ..+.. +...++.+.
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 136 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY-------EEAKQFADE 136 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHHH
Confidence 33445688999999999865555543 3555444432222 379999999998654 32210 012222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
... ..+..||.++.++.+++..+.+.+
T Consensus 137 ~~~------~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 137 NGL------LFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cCC------EEEEEECCCCCCHHHHHHHHHHHH
Confidence 211 123457778899999988776544
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.68 E-value=1e-15 Score=112.85 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||++.+++..... ....+.+.+....... ..+ ..+.++||||.. .+....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHHH
Confidence 589999999999999999999775421 1111222222222222 222 357899999922 122222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+.+|++++++|+++.-|.... .++..+....... .|++++.||+|.... ..+.. + ......+..
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDK--RVVDY--S-----EAQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccc--cCCCH--H-----HHHHHHHHc
Confidence 3344678999999999855455443 3455554433222 389999999998654 32210 0 012222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.. ..+..|+.++.+++++++.|.+.+.
T Consensus 138 ~~------~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GI------PFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CC------eEEEEECCCCcCHHHHHHHHHHHHH
Confidence 11 2245577778999999998877654
No 70
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.68 E-value=4.9e-15 Score=109.82 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE--eeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|..|||||||++.+.+... ...+..|...... .... .....+.++||||.. .+....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF----DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence 689999999999999999998765 2222333322221 1111 113468999999932 222233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+++.+.-|... ..|+..+..... +...|+++|.||.|+... ........ ....+.+..
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~--~~~~~~~~-----~~~~~~~~~ 138 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP--AQYALMEQ-----DAIKLAAEM 138 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc--ccccccHH-----HHHHHHHHc
Confidence 344568899999999975434443 345555443321 111268899999998543 22110000 011222221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...+ +..||.++.+++++++.|..++.+-
T Consensus 139 ~~~~------~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 139 QAEY------WSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred CCeE------EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 1111 2457778899999999998887663
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=3.2e-15 Score=110.54 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.+|+|+|++|+|||||++.+++....... ....+.+........ .....+.++||||. +++.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQ-----------ESFRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCc-----------HHHHHHHH
Confidence 69999999999999999999987642211 112222221111111 12235889999992 22233333
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
...+.+|++++++|+++.-|.... +++..+.....+. .|++++.||+|.... ..+.. ...+.+.....
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~--~~~~~-------~~~~~~~~~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESR--REVSY-------EEGEAFAKEHG 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cCCCH-------HHHHHHHHHcC
Confidence 445678999999999854444433 3454444432222 389999999998743 22110 01112222211
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. .+..++.++.+++++++.+.+.+.+
T Consensus 141 ~~------~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 141 LI------FMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CE------EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11 2345667778999999888776543
No 72
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.68 E-value=5.2e-15 Score=108.86 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=93.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h
Q 027090 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---G 98 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~---~ 98 (228)
|+++|++|+|||||+|.|++.............|...... .....+.++||||+......... .+++...+ .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~-~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSKEV-KEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCHHH-HHHHHHHHHHHH
Confidence 7999999999999999999433211111111222222221 12237899999998775443211 12222222 1
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH-hcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (228)
.....++.++++++.....+....+.++++... + .|++++.||+|.... .+....... +....+ ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233467888999998755555555555555432 2 278999999998755 444433332 322232 111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
. ...++.++.++.++.++++.|.++
T Consensus 145 ~-----~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 D-----PPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred C-----CceEEEecCCCCCHHHHHHHHHHh
Confidence 1 112244566678899999888764
No 73
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=2e-15 Score=111.46 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|..|+|||||++.+.+...+.. .+.+........ .......+.++||||..... ..+. .
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~----~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN----VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLA----A 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc----CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHh----h
Confidence 799999999999999999998765221 111111111111 11234568899999954321 1111 2
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
....+|++++++++++..|.... .|+..+..... . .|++++.||+|+... ......... +..+.....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~~~ 136 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEE-----MLPIMNEFR 136 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHH-----HHHHHHHHh
Confidence 23567999999999866666653 46666655432 2 389999999998754 322110000 111111111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.. ...+..||.++.+++++++.+.+.+.
T Consensus 137 ~~----~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 137 EI----ETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred cc----cEEEEeccccccCHHHHHHHHHHHhc
Confidence 11 12335577788999999998877653
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=1.6e-15 Score=111.62 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+|+|++|||||||++++++..... ....|............ ...+.++||||..... ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD----DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHH
Confidence 79999999999999999999876421 11222221111111122 2457899999954321 1122
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......++++++++++..-+.... .+...+....... ..|++++.||+|+... ..+... ....+.+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~~ 136 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE--RVVSTE-------EGKELARQWG 136 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--ceEcHH-------HHHHHHHHcC
Confidence 233466999999999854444333 2333343332211 2489999999998653 222110 1122222222
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
. ..+..||.++.+++++++.+.+.+.
T Consensus 137 ~------~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 C------PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred C------EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 1245677788999999998877654
No 75
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.68 E-value=5.4e-16 Score=115.23 Aligned_cols=162 Identities=20% Similarity=0.093 Sum_probs=95.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
|+|+|+.|+|||||++.+++.... .....+...........++. .+.++||||.... ......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP----EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY-----------DRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC----CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc-----------chhchh
Confidence 589999999999999999987652 11222332222211222333 4889999994322 122223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHHHH
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLKEI 172 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~ 172 (228)
....+|++++++++++.-|.... .|+..+..... ..|++++.||+|+... ......+.... .....++
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRED--KSTLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhC--hhhhhhhhcccCCCccHHHHHHH
Confidence 45678999999999866555543 35665655432 2489999999998653 22111111111 1112223
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.+..... ..+..|+.++.+++++++.+.+.+
T Consensus 141 ~~~~~~~-----~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKRIGAV-----KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHcCCc-----EEEEecCCCCCCHHHHHHHHHHHh
Confidence 3322210 123457788899999999877654
No 76
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=7.2e-15 Score=113.63 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=104.7
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.+.+.....+|+++|..|+|||||++.+.+.... .....|............ ...+.++||+|-.
T Consensus 6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~----~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e--------- 72 (232)
T cd04174 6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTAGLETEEQRVELSLWDTSGSP--------- 72 (232)
T ss_pred cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCC----CCcCCceeeeeEEEEEECCEEEEEEEEeCCCch---------
Confidence 3344455679999999999999999999877542 122333322221111122 3458999999921
Q ss_pred HHHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc-CC
Q 027090 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CP 166 (228)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~-~~ 166 (228)
.+.......+.++|++++|+|+++.-|... ..|+..+...... .|++||.||+|+.... ..+.+..... +.
T Consensus 73 --~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~-~~~~~l~~~~~~~ 146 (232)
T cd04174 73 --YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLRTDL-STLMELSNQKQAP 146 (232)
T ss_pred --hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccccccc-chhhhhccccCCc
Confidence 222233345678899999999997777764 4577777665432 2899999999985321 1111111100 01
Q ss_pred chHHHHHHhcCCeEEEeeCCCcccccchH-HHHHHHHHHHHHHHhc
Q 027090 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQN 211 (228)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~~ 211 (228)
-...+..+.|...-+. ..+..||.++. +++++++.+...+.++
T Consensus 147 Vs~~e~~~~a~~~~~~--~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 147 ISYEQGCALAKQLGAE--VYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCHHHHHHHHHHcCCC--EEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 1122333333322110 01245777776 7999998887665543
No 77
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.68 E-value=2.5e-15 Score=112.73 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|..|||||||++.+.+...... ..+........... ......+.++||||.. .+....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHH
Confidence 6899999999999999999987654211 11111111111111 1234578999999932 122223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++|+++.-+.... .++..+...... ..+|+++++||+|.... ....+ +.. +..+.+..
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~--~~~~~-~~~-----~~~~~~~~ 140 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNA--LSVSE-VEK-----LLALHELS 140 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcccc--CCHHH-HHH-----HhCccccC
Confidence 3345678999999998743333332 233333332221 12489999999998643 22221 111 00000111
Q ss_pred CC-eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. .+. ....||.++.+++++++.|.+.+.+
T Consensus 141 ~~~~~~----~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 141 ASTPWH----VQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred CCCceE----EEEeecccCCCHHHHHHHHHHHHHH
Confidence 11 111 2346888889999999998877754
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=7.2e-15 Score=111.48 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+|+|.+|||||||++.+++..... ....|+....+ .....++ ..+.++||||....... ...++....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~----~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE----EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc----ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 79999999999999999999876521 12223221111 1111333 35789999997643211 112222222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhC-ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~-~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
......+|++++|+|++++.|..... +++.+..... .....|++++.||+|+... +..... ...++...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 23346789999999998666665443 4444544331 1122389999999998643 221110 11122111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 214 (228)
... -+.+..||.++.+++++++.+.+.+-.+++.
T Consensus 146 ~~~-----~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 146 SWK-----CGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred hcC-----CcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 100 1224567888899999998887666665554
No 79
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=2e-15 Score=111.31 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|+|||||++.+++...... ...|........ .......+.++||||..... ...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP-----------AMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC----cCCcchheEEEEEEECCEEEEEEEEECCCCCcch-----------HHH
Confidence 5899999999999999999998765221 112221111111 11223458899999954321 111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~-~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
......++++++|+++++.-|... ..+++.+....+.. ...|++++.||+|.... +++.... .......
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~ 137 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE 137 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence 223446799999999986666654 34556565543321 22489999999998653 3321110 1111111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ..+..||.++.+++++++.|.++
T Consensus 138 ~~~------~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 138 WNC------AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hCC------cEEEeecCCCCCHHHHHHHHHhc
Confidence 110 12456788889999999987654
No 80
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=2.2e-16 Score=115.59 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
++|+++|++|+|||||+|+|+|... ... .+.... +... .++||||.+... .++...+..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~~v~------~~~~--~~iDtpG~~~~~-------~~~~~~~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQAVE------FNDK--GDIDTPGEYFSH-------PRWYHALIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc----cCc--cceEEE------ECCC--CcccCCccccCC-------HHHHHHHHH
Confidence 4799999999999999999998643 111 111111 1111 269999976432 122222223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|+++++++++...+......+ .. ... +|+++++||+|.... .... +.+..+....
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~~~~----~~-~~~--~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~- 120 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPAGLL----DI-GVS--KRQIAVISKTDMPDA---DVAA---------TRKLLLETGF- 120 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCHHHH----hc-cCC--CCeEEEEEccccCcc---cHHH---------HHHHHHHcCC-
Confidence 35678999999999855444222221 11 111 378999999997543 2222 1112211111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..+.+..|+.++.++++|++.+.+.+...
T Consensus 121 ---~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 121 ---EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ---CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 01334467788899999999998888653
No 81
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=4.3e-15 Score=109.77 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||++.+++....... ..+...+....... ..+ ..+.++||||.. .+....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHHH
Confidence 68999999999999999999987642111 11111222111111 222 357899999922 122222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+.+|++++++|++++.|.... +++..+....... .|++++.||+|+... ..+.. + ......+..
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~ 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEK--RVVSK--E-----EGEALADEY 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cCCCH--H-----HHHHHHHHc
Confidence 3344678999999999865555443 3444444432222 389999999998753 22110 0 122222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
... .+..|+.++.++.++++.+.+.+.
T Consensus 139 ~~~------~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 139 GIK------FLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCE------EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111 245577778899999998877654
No 82
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.67 E-value=6.8e-15 Score=113.16 Aligned_cols=161 Identities=20% Similarity=0.140 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+|+++|.+|+|||||++.+++... ......|..... ...... ....+.++||||.. .....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHH
Confidence 799999999999999999998764 222233433222 222211 23468999999921 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++++|+++.-|.... .|+..+...... ....|+++|.||+|+... +.+... ....+.+
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~-------~~~~~~~ 137 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD-------KHARFAQ 137 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence 33345678999999999866565544 355666555432 111268889999998643 222110 1222332
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...-. .+..||.++.+++++++.+.+.+...
T Consensus 138 ~~~~~------~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 138 ANGME------SCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HcCCE------EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 22211 12357888899999999998877653
No 83
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.67 E-value=9.8e-16 Score=130.72 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=107.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~ 97 (228)
..+|+++|.+|+|||||+|+|+|.+. .+.+.+..|.-........++..+.++|.||.++......+ +.+. +++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED--EKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence 35799999999999999999999875 24455444433334444466777999999999887654221 1222 222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
..+++|+++.|+|++ .+... +.+...++.-. .|+++++|++|..++ +-++-- .+.+.+...
T Consensus 78 --l~~~~D~ivnVvDAt-nLeRn----LyltlQLlE~g--~p~ilaLNm~D~A~~--~Gi~ID--------~~~L~~~LG 138 (653)
T COG0370 78 --LEGKPDLIVNVVDAT-NLERN----LYLTLQLLELG--IPMILALNMIDEAKK--RGIRID--------IEKLSKLLG 138 (653)
T ss_pred --hcCCCCEEEEEcccc-hHHHH----HHHHHHHHHcC--CCeEEEeccHhhHHh--cCCccc--------HHHHHHHhC
Confidence 246889999999998 33332 23333332222 279999999998866 444322 223333322
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
- +.++.+|.++.+++++++.+.+..+.+..
T Consensus 139 v------PVv~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 139 V------PVVPTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred C------CEEEEEeecCCCHHHHHHHHHHhcccccc
Confidence 2 34556777889999999999887777554
No 84
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=3.3e-15 Score=112.82 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
.+|+++|+.++|||||+++|++...... .......|......... .++..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA----- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH-----
Confidence 6899999999999999999986411000 00123444444333322 355678999999953
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+...+......+|++++|+++..+....+...+..+... +.+ ++++++||+|....
T Consensus 77 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 77 ------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred ------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 2333333344578999999999877877777777766543 322 47789999998744
No 85
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.67 E-value=2.5e-15 Score=112.28 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-----------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.+|+++|++|||||||++.+.+.... +....+...+........ .....+.++||||.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------- 73 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN--PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------- 73 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------
Confidence 68999999999999999999887541 111112221121111111 11245889999991
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCc
Q 027090 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~ 167 (228)
+++..........+|++++++|+++.-|.... .|+..+...... ...|+++|.||+|+... ..+.. .
T Consensus 74 --~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~v~~-------~ 141 (180)
T cd04127 74 --ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLEDQ--RQVSE-------E 141 (180)
T ss_pred --HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchhc--CccCH-------H
Confidence 22333334455688999999999865555543 355555443211 11379999999998653 22211 0
Q ss_pred hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...++.+...- ..+..|+.++.+++++++.+.+.+.+
T Consensus 142 ~~~~~~~~~~~------~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 QAKALADKYGI------PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHcCC------eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 12222222211 12456778889999999988775543
No 86
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.67 E-value=7.9e-15 Score=109.75 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=101.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+++|..|+|||||++.+.+.... .....|...........+ ...+.++||+|- +++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~----~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~-----------e~~~~ 68 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGS-----------PYYDN 68 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC----CccCCceeeeeEEEEEECCEEEEEEEEECCCc-----------hhhHh
Confidence 3468999999999999999999877542 222333322222111122 345899999992 12233
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKEI 172 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (228)
.....+.++|++++|+|++++-|.... .|+..+...... .|++||.||+|+.... ..+...... .+.-..++.
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 144 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG 144 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence 334556788999999999977777763 577777665432 3899999999985320 111111110 001112233
Q ss_pred HHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHH
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~ 207 (228)
.+.+...-.. .....||.++.+ +.++++.+.++
T Consensus 145 ~~~a~~~~~~--~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 145 ANMAKQIGAA--TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHcCCC--EEEECCcCCCCCCHHHHHHHHHHH
Confidence 3333322110 112457888888 99999877664
No 87
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=3.8e-15 Score=109.61 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|||||||++.++.... ......|+..........+ ...+.++||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC----CcccCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence 5899999999999999999986543 1122233322211111122 33467999999432 12222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|+++++++.+..-+.... +++..+..... ....|++++.||+|+... ..+.. +...++.+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGK-------EQGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcH-------HHHHHHHHHh
Confidence 2334567999999998755554443 34444443322 122389999999998643 22111 0112222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
... .+..+|.++.+++++++.+.+.+
T Consensus 137 ~~~------~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCA------FLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCE------EEEeeCCCCCCHHHHHHHHHHHh
Confidence 211 23557778899999999887654
No 88
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=2e-15 Score=110.16 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=90.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 027090 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (228)
Q Consensus 24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (228)
|+|.+|+|||||+|++++..... +. ....|......... .++..+.++||||..+....... ..+....... +.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence 58999999999999999976321 11 12223333222222 44567899999998765432111 1222211111 58
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe
Q 027090 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 104 ~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
+|++++++|+.. ... ...++..+.. .. +|+++++||+|.... ..+..... .+......
T Consensus 75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~---~~--~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~----- 132 (158)
T cd01879 75 PDLIVNVVDATN-LER-NLYLTLQLLE---LG--LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGV----- 132 (158)
T ss_pred CcEEEEEeeCCc-chh-HHHHHHHHHH---cC--CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCC-----
Confidence 899999999973 222 2222222222 12 389999999998754 33322111 22222221
Q ss_pred eCCCcccccchHHHHHHHHHHHHHH
Q 027090 184 DNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
..+..++.++.+++++++.+.+++
T Consensus 133 -~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 133 -PVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -CeEEEEccCCCCHHHHHHHHHHHh
Confidence 234456777889999999887764
No 89
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=2.1e-15 Score=110.60 Aligned_cols=156 Identities=14% Similarity=0.068 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|++|||||||++.|++...+... ...|........ ......+.++||||... +.......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESF-EKGNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEE-EECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 4899999999999999999986432111 122222211111 24566789999999432 22223334
Q ss_pred cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc--
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-- 176 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~-~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 176 (228)
...+|++++++|.+...+.... .++..+..... .....|+++++||+|.... ........ .....
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~---------~l~~~~~ 134 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQ---------LLGLENI 134 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHH---------HhCCccc
Confidence 4678999999999855544332 34444433210 0112489999999998654 22222111 11111
Q ss_pred -CCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
...+ ..+..||.++.++++++++|.+
T Consensus 135 ~~~~~----~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 135 KDKPW----HIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cCceE----EEEEeeCCCCCchHHHHHHHhc
Confidence 1111 1234578888999999998753
No 90
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.67 E-value=8.2e-15 Score=110.66 Aligned_cols=169 Identities=15% Similarity=0.066 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|..|+|||||++.+...... .....|...........++ ..+.++||+|-. .+....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e-----------~~~~l~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP----KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE-----------EYDRLR 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC----cCCCCceEeeeEEEEEECCEEEEEEEEECCCch-----------hhhhhh
Confidence 68999999999999999999876541 2223343322221111222 458899999922 222233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--CchHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PKPLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (228)
...++.+|++++|++++++-|..... |+..+...... .|++||.||.|+... ....+.+.... .....+..
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~---~piilvgNK~DL~~~--~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN---VPILLVGTKKDLRND--ADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEeChhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence 34567889999999998777766653 55555443322 389999999998643 32222221111 11122222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.+..... ......||.++.++.++++.+.+.+..
T Consensus 144 ~~a~~~~~--~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 144 ALAKQIHA--VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHcCC--cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 33321110 011245677889999999988776654
No 91
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=1.1e-14 Score=115.60 Aligned_cols=145 Identities=23% Similarity=0.310 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCC------CCCcceeeEeEeee-eeCC--cEEEEEeCCCCCCCCCCcHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~-~~~~--~~~~~iDtpG~~~~~~~~~~~ 89 (228)
..+|+|+|++|+|||||+|+|++......... ....|......... ..++ ..+.++||||+++.......+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 46899999999999999999999876433210 12334333322221 1233 358999999998875432222
Q ss_pred HHHHHH--------HHh----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 90 GKEIVK--------CLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 90 ~~~~~~--------~~~----------~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
+.+.. ++. ....++|+++++++.. .+++..+.+.++.+.. . .|+++|+||+|..
T Consensus 84 -~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l 156 (276)
T cd01850 84 -KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTL 156 (276)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcC
Confidence 22221 110 1123689999999886 3677777776666643 2 2799999999998
Q ss_pred ccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 151 EDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.. .++....+. +.+.++..+
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~ 176 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHN 176 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcC
Confidence 75 555554444 444444444
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=1.4e-14 Score=106.37 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||++.+++..... ......+.+....... ..+ ..+.++|+||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence 379999999999999999999876511 1111222222222222 233 357899999921 222233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++++.+.-+.... +++..+....... .|++++.||+|.... ..+.. +...++.+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~--~~~~~-------~~~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQ--RQVSR-------EEAEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccc--cCCCH-------HHHHHHHHHc
Confidence 3344678999999999854454443 3555544443222 389999999997653 21110 0122222322
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... .+..++.++.+++++++.|.+.+.+
T Consensus 136 ~~~------~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 136 GLP------FFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCe------EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 211 2345666778999999999887755
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.66 E-value=3.6e-15 Score=110.83 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=91.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.....+|+++|++|+|||||+++|++.... . ...|......... .+...+.++||||... +..
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~---~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~ 73 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID--T---ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRP 73 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC--C---cCCccccceEEEE-ECCEEEEEEECCCCHH-----------HHH
Confidence 344578999999999999999999987431 1 1222222222222 3466789999999321 122
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.........|++++|+|++.+-+.... .++..+..... ....|+++++||+|.... ....+ +.+..+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~ 141 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER-LAGATLLILANKQDLPGA--LSEEE---------IREALE 141 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence 223345678999999999854344332 23332221111 112489999999998654 22221 111111
Q ss_pred hc--CCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 175 LC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 175 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
.. ....+ ..+..||.++.+++++++.+.
T Consensus 142 ~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHW---RIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCce---EEEeccCCCCcCHHHHHHHHh
Confidence 10 11111 234568888899999998764
No 94
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=1.4e-15 Score=111.48 Aligned_cols=156 Identities=19% Similarity=0.125 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+|+|++|+|||||++.|++....... ....+.+........ .....+.++||||.. .+......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----------~~~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE-----------RFRSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchH-----------HHHHhHHH
Confidence 7999999999999999999987642111 112222222121121 122457899999932 22222233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
....+|++++++++++..+.... .++..+....... .|++++.||+|.... ..+.. .....+......
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~--~~~~~-------~~~~~~~~~~~~ 137 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ--REVTF-------LEASRFAQENGL 137 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh--ccCCH-------HHHHHHHHHcCC
Confidence 44578999999999866555543 4555555443323 389999999998643 22110 011222222221
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
..+..|+.++.++.++++.+.+
T Consensus 138 ------~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 138 ------LFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ------EEEEEECCCCCCHHHHHHHHHH
Confidence 1234466777899999987764
No 95
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.66 E-value=1.8e-15 Score=110.18 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=87.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (228)
|+|+|++|||||||+|+|++.... .....|......... .....+.++|+||... +........
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS----EDTIPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC----cCccCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 799999999999999999998652 112223222222222 3446789999999422 222233334
Q ss_pred CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
..+|+++++++++...+.... .++..+..... ...+|+++++||+|.... ............ . ......+
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~---~---~~~~~~~ 136 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQMNL---K---SITDREV 136 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHHhCc---c---cccCCce
Confidence 577999999998743222221 22222221111 112389999999998755 433332222000 0 0001111
Q ss_pred EEeeCCCcccccchHHHHHHHHHHHH
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.....++.++.+++++++.|.+
T Consensus 137 ----~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 137 ----SCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ----EEEEEEeccCCChHHHHHHHhh
Confidence 1234567788999999988754
No 96
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=7.7e-15 Score=107.52 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|+.|||||||++++++...... .....+.+....... ..+ ..+.++||||.. .+.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence 799999999999999999998865221 111222222111111 223 358899999921 2222333
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhc
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 176 (228)
.....+|+++++++++++-|.... .++..+....+. ..|++++.||+|.... ... .+. .....+..
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~--~~~~~~~--------~~~~~~~~ 135 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK--RQVSTEE--------GEKKAKEL 135 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc--CccCHHH--------HHHHHHHh
Confidence 345677999999999855444443 344444333222 2389999999998543 221 111 11222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... .+..++.++.+++++++.+.+.
T Consensus 136 ~~~------~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAM------FIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCE------EEEEeCCCCCCHHHHHHHHHHh
Confidence 211 2335667778999999988764
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=3.6e-15 Score=109.69 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.+|+++|++|||||||++++....... ......|..... .... ......+.++||||. +.+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~ 67 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVF--PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYSD 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHHH
Confidence 379999999999999999998542100 122233332211 1111 123356899999992 22223
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++++|+++.-+.... .+++.+..... ..|+++|.||+|.... .++.... .+....
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~ 135 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK---HMPGVLVGNKMDLADK--AEVTDAQ-------AQAFAQ 135 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cCCCHHH-------HHHHHH
Confidence 334455688999999999855444433 45555544321 2389999999998654 3222111 111111
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.... ..+..|+.++.++.++++.+.+.+
T Consensus 136 ~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ANQL------KFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HcCC------eEEEEeCCCCCChHHHHHHHHHHh
Confidence 1111 123457778899999998887653
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=1.7e-15 Score=112.59 Aligned_cols=164 Identities=16% Similarity=0.084 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|++|||||||++.+.+..... ....|............ ...+.++||||... +....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence 589999999999999999999865421 12222222211111122 23578999999432 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--Cc---hHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PK---PLK 170 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~---~~~ 170 (228)
.......|++++++++++.-|.... .++..+..... ..|++++.||+|+... ......+.... .. ..+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHHH
Confidence 2344678999999999855444433 24454444322 2389999999998654 33322222111 11 122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
++.+..... ..+..||.++.+++++++.+.+.+
T Consensus 142 ~~~~~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 142 DMANKIGAF-----GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHHcCCc-----EEEEeccccCcCHHHHHHHHHHHh
Confidence 222222211 123457778899999999887543
No 99
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=2.3e-15 Score=113.74 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc---cccc--CCCCCcceeeEeEeeee-------------eCCcEEEEEeCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKA---FKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD 81 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~---~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~~iDtpG~~~ 81 (228)
.+|+++|+.|+|||||+++|++... .... ......|.......... .....+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 3799999999999999999987310 0000 00112232222211111 125578999999952
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
.+.+.+......+|++++|+|+....+......+..... . . .|+++++||+|.... ......+
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~--~--~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L--C--KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c--C--CCEEEEEECcccCCH--HHHHHHH
Confidence 122222223346799999999986665555444333322 2 1 279999999998754 4333333
Q ss_pred hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.. ...+......... ..-..++.|+.++.++++|++.+.+.++.
T Consensus 143 ~~~-~~~l~~~~~~~~~---~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EKM-KKKLQKTLEKTRF---KNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHH-HHHHHHHHHhcCc---CCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 320 0001111111110 01123556888889999999999887765
No 100
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.9e-15 Score=115.01 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=96.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+|+|+|++|+|||||++.+++.... .....|.. ........ .....+.++||||.. .+...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~----~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~-----------~~~~~ 66 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS----QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE-----------RFGGM 66 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC----CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch-----------hhhhh
Confidence 7999999999999999999987541 12223332 21122221 123458999999942 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.....+.++++++++|++.+-|..... |+..+...... ....|++||.||+|+... ..+. .+.+.++.
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~-------~~~~~~~~ 137 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKD-------GEQMDQFC 137 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccC-------HHHHHHHH
Confidence 334456889999999998665655543 44444433211 122389999999998632 1110 01122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.... ...+..|+.++.+++++++.+.+.+...
T Consensus 138 ~~~~~-----~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 138 KENGF-----IGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred HHcCC-----ceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 22221 1123457778899999999888776654
No 101
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=2.7e-15 Score=110.22 Aligned_cols=159 Identities=21% Similarity=0.152 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.+|+++|++|+|||||+|++++....... ............... .....+.++|+||.. ++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQ--ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCchH-----------HHHHHHH
Confidence 58999999999999999999988752211 111111111111111 123357899999921 1222223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......|+++++++++..-+.... .++..+....... .|++++.||+|........... ...+.....
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADENG 137 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHHcC
Confidence 344577999999999744444433 3455555543222 3788999999976330011111 112222222
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
. ..+..|+.++.++.++++.+.+.+
T Consensus 138 ~------~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 L------LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred C------EEEEEECCCCCCHHHHHHHHHHHh
Confidence 1 234557777899999999887654
No 102
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=6.7e-15 Score=131.11 Aligned_cols=163 Identities=19% Similarity=0.140 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|++|+|||||+|.|++... ......+.++.........+.+..+.++||||+..... .+...+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---GIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---cHHHHHHHHHH
Confidence 35899999999999999999998753 11222222333333333345677899999999864221 12233444444
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++|+|+..+++..+..+.+.+.. ..+|+++|+||+|.... .... .+.... .
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~--~~~~-----------~~~~~l-g- 409 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQAS--EYDA-----------AEFWKL-G- 409 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccccc--hhhH-----------HHHHHc-C-
Confidence 45567899999999987788777766666643 12489999999997543 2111 111111 0
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...++.||.++.++.+|++.|.+.+++
T Consensus 410 ----~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 ----LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ----CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1112356888899999999999888765
No 103
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=7.8e-15 Score=113.07 Aligned_cols=160 Identities=13% Similarity=0.008 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eee-eCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
....+|+++|..|||||||++.++..... .....|....... ... .....+.++||||... +
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~----~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~ 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC----CccCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence 55589999999999999999998765441 1222333222221 111 1234689999999432 1
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.......+...+++++|+|.+++.|.... .|++.+.....+ .|++||.||+|+... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~---~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 22222345678999999999976666554 466666554322 389999999998543 211111 1 11
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+..... ....||.++.++.++++.|.+.+.+.
T Consensus 142 ~~~~~~~------~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 142 HRKKNLQ------YYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHhcCCE------EEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 1111111 13457888899999999888777653
No 104
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.65 E-value=4.9e-15 Score=109.95 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|++|||||||+++|++...... ..|......... ..+..+.++|+||.. .+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~-~~~~~~~~~D~~G~~-----------~~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ-SDGFKLNVWDIGGQR-----------AIRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence 3457999999999999999999998754211 111111112222 346678999999932 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+......++++++++|+.+.-+... ..++..+..... ....|+++++||+|.... .....+.+... +...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~l~------~~~~ 145 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEALN------LHDL 145 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHHcC------Cccc
Confidence 3333457799999999974322222 122222221111 112389999999998654 43443333210 1111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
....+.. ...|+.++.++++++++|.+
T Consensus 146 ~~~~~~~----~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTWHI----QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCeEEE----EEeECCCCCCHHHHHHHHhc
Confidence 1111111 24578888999999998754
No 105
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.65 E-value=6.5e-15 Score=109.59 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+++++|..|+|||||+..+..... ......|...........+ ...+.++||+|-.. +....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f----~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF----PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED-----------YNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC----CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc-----------ccccc
Confidence 4799999999999999999997665 2222333322221111122 34589999999432 22223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH--HH-hhccCCchHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE--DF-LGHECPKPLKEI 172 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~--~~-~~~~~~~~~~~~ 172 (228)
......++++++|+|++++-|.... .|+..+.....+ .|++||.||+|+... .... +. .+.........+
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~---~piilvgnK~Dl~~~--~~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPN---VPIVLVGTKLDLRDD--KQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeChhhccC--hhhhhhccCCCCCCHHHHHHH
Confidence 3355688999999999988888774 477777654332 389999999998643 2100 00 000001112223
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.+..... ..+..||.++.+++++++.+.+.+
T Consensus 142 a~~~~~~-----~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAA-----AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCC-----EEEECCCCcccCHHHHHHHHHHHH
Confidence 3222110 123457888899999999888765
No 106
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.65 E-value=1.7e-15 Score=112.52 Aligned_cols=162 Identities=17% Similarity=0.062 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|++|+|||||++.+.+.... .....|............+ ..+.++||||..... ....
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------RLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------cccc
Confidence 7999999999999999999877642 1122232222111111233 347899999954321 1122
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC-----chHHH
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLKE 171 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~-----~~~~~ 171 (228)
......|+++++++..++-+.... .++..+... .. ..|++++.||+|+... ......+..... .....
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHHH
Confidence 345678999999999865555444 355555543 22 2389999999998644 222222211111 11222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
+.+..... .....||.++.+++++++.+.+.
T Consensus 142 ~~~~~~~~-----~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 142 LAKEIGAH-----CYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHcCCC-----EEEEecCCcCCCHHHHHHHHHHH
Confidence 22222211 11245778889999999877654
No 107
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.65 E-value=9.3e-15 Score=122.99 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+.+|+|+|++|+|||||+|+|++.... .+...+.|+..........++..+.++||||+.+.....+ +.-...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~a--ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie---~~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRA--IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVE---RLGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHH---HHHHHH
Confidence 45679999999999999999999987531 1223344443333333335677889999999865421111 111111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
.....+.+|++++|+|++.+.+..+. ++..+.. .. +|+++|+||+|+..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence 12234578999999999877776654 4333321 12 38999999999853
No 108
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.9e-14 Score=107.35 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|+|||||++.+.+...+ .....|...........+ ...+.++||+|-. .+....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~-----------~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP----ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP-----------YYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC----CCcCCceEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhcc
Confidence 47999999999999999999987652 122333322221111122 3458899999921 222223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKEILQ 174 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~ 174 (228)
....+.+|++++|+|++++-|... ..|+..+...... .|++||.||+|+.... ....+.-.. .+.-...+..+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence 345678899999999997778776 3577777665433 3899999999985421 111111100 00011222333
Q ss_pred hcCCeEEEeeCCCcccccchHH-HHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~ 207 (228)
.+...-.. ..+..||.++.+ +++++..+.++
T Consensus 143 ~a~~~~~~--~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQLGAE--IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHhCCC--EEEECccCcCCcCHHHHHHHHHHH
Confidence 33221110 113457777785 99999877664
No 109
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=3.6e-15 Score=115.76 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=119.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH-HHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~-~~~~~~ 94 (228)
..+...|+|+|.+++|||||.|.+.|..+ +.++...-|+..+...+-...+..+.++||||+-........ ....+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 35567899999999999999999999987 555566778887777766666777999999998765432221 111111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH----
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK---- 170 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~---- 170 (228)
.....+...+|+++.++|+...-..-..+.|..+.... .- |-++|+||+|..... +-+.+....+.+..+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-~i---ps~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-KI---PSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-cC---Cceeeccchhcchhh-hHHhhhHHhccccccchhhh
Confidence 12233456789999999997322222233444444432 12 689999999988651 2333333333222211
Q ss_pred HH-HHhcCCe----------EEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 171 EI-LQLCDNR----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 171 ~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
++ .++.+.. |--|...+..||.++.++++|.+++....++..
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 11 1111111 222334556788899999999999999888743
No 110
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.65 E-value=9.9e-15 Score=107.97 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+++|..|+|||||++.|....... ...|......... .....+.++||||.. .+....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-----~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-----ccCCcccceEEEE-ECCEEEEEEECCCCH-----------HHHHHH
Confidence 34799999999999999999998654311 1122222222222 355679999999942 122223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (228)
......+|++++|+|+++..+..+.. ..+...+... ...|++|++||+|+.... .+++...+.. .+
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~ 139 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEAR--QELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TR 139 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHHHH--HHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Cc
Confidence 33456789999999998654444332 2222222211 123899999999986430 0122221110 01
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.....+. ....||.++.+++++++.|.+
T Consensus 140 ~~~~~~~----~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 140 IRDRNWY----VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCCcEE----EEEeeCCCCCChHHHHHHHhc
Confidence 1111121 234688889999999988753
No 111
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.65 E-value=5.6e-15 Score=131.47 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~ 96 (228)
..+|+++|.+|||||||+|+|+|.... +.+...++..........++..+.++||||.++...... ...+.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~---vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR---VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998652 223333333222222335667899999999987653211 111222221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
. .....+|++++|+|+++ +.... .+...+.. .. .|+++++||+|..+. +.+...++ ++.+..
T Consensus 80 ~-l~~~~aD~vI~VvDat~-ler~l-~l~~ql~e---~g--iPvIvVlNK~Dl~~~--~~i~id~~--------~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDASN-LERNL-YLTLQLLE---LG--IPCIVALNMLDIAEK--QNIRIDID--------ALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCCc-chhhH-HHHHHHHH---cC--CCEEEEEEchhhhhc--cCcHHHHH--------HHHHHh
Confidence 1 12357899999999973 32221 12222222 12 389999999998754 33332222 222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
+. +.++.++.++.+++++.+.+.+..+
T Consensus 142 G~------pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GC------PVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CC------CEEEEEeecCCCHHHHHHHHHHhhh
Confidence 21 2334566667788888888777654
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=1.3e-14 Score=106.18 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|+.|+|||||+|.+++....... ....+.......... .....+.++|+||-. .+......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQE-----------RYHALGPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchH-----------HHHHhhHH
Confidence 7999999999999999999987652111 111111111111111 122358899999921 12222223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH-HHhhccCCchHHHHHHhcC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (228)
....+|+++++++.++.-+.... .+++.+....... .|+++++||+|.... ..+. .. +.++.+...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~--~~~~~~~--------~~~~~~~~~ 136 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQ--RVVSKSE--------AEEYAKSVG 136 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHHHcC
Confidence 34578999999999855444433 3444444443332 389999999998743 2221 11 122222222
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
..+ +..++.++.+++++++.+.+.+
T Consensus 137 ~~~------~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 137 AKH------FETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CEE------EEEeCCCCCCHHHHHHHHHHHh
Confidence 122 2446677789999999887653
No 113
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.65 E-value=3.4e-15 Score=110.27 Aligned_cols=155 Identities=16% Similarity=0.080 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|+.|||||||++.++.... ......|......... ......+.++||||..... ...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----------GLR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----------ccc
Confidence 799999999999999999986543 1122333322222211 1123458999999953321 111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+|.++.-|.... .++..+..... ..|++++.||+|+... . .... ..+..+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~-~~~~--------~~~~~~~~ 132 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--K-VKAK--------QITFHRKK 132 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--c-CCHH--------HHHHHHHc
Confidence 2234577999999999866555543 35566655443 2389999999998633 2 1110 11111111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. ...+..||.++.+++++++.|.+.+.+
T Consensus 133 ~------~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 133 N------LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred C------CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 1 112345778889999999999877765
No 114
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=1.1e-14 Score=106.86 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--EeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+|+++|++|+|||||++.+++.... .....|..... .... ..+ ..+.++||||.. .+...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH----SSHISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence 7999999999999999999877652 11222322221 1222 222 357899999932 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++++|++++-|.... .+++.+....... .|++++.||.|+... +.+... ....+.+.
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~-------~~~~~~~~ 134 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDE-------QGNKLAKE 134 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHH-------HHHHHHHH
Confidence 33345678999999999866565554 3555554443222 379999999998654 332210 01222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
....+ ...||.++.+++++++.|.+.
T Consensus 135 ~~~~~------~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMDF------FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cCCEE------EEEeCCCCCCHHHHHHHHHhh
Confidence 22111 345677788999999887653
No 115
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.65 E-value=1.7e-15 Score=106.98 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
++|+|+|+.|||||||+++|.|... ....++. ..+. + .+|||||-+-.. ..+..++-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----~~~KTq~--i~~~------~---~~IDTPGEyiE~-------~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKKTQA--IEYY------D---NTIDTPGEYIEN-------PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----CcCccce--eEec------c---cEEECChhheeC-------HHHHHHHHH
Confidence 6899999999999999999998764 2222222 1111 1 369999965432 345555555
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|.++++.+++...+.--... ...+. +|++-|+||+|..... +.++...+ .++.+...
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~f----a~~f~----~pvIGVITK~Dl~~~~-~~i~~a~~---------~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGF----ASMFN----KPVIGVITKIDLPSDD-ANIERAKK---------WLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchh----hcccC----CCEEEEEECccCccch-hhHHHHHH---------HHHHcCCC
Confidence 5568899999999984322211111 12232 2799999999998321 44443222 23333221
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
.....|+.+++++++|.++|.
T Consensus 122 -----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 -----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -----CeEEEECCCCcCHHHHHHHHh
Confidence 223446667799999999875
No 116
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=2.2e-14 Score=107.42 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=95.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
++..+|+++|..|||||||++.+....... ...|........ ......+.++|+||- ..+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~-~~~~~~~~i~D~~Gq-----------~~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETV-EYKNISFTVWDVGGQ-----------DKIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEE-EECCEEEEEEECCCC-----------HHHHHH
Confidence 345799999999999999999997654321 122322222222 245667999999992 122223
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
....+.++|++++|+|+++.-+..+.. ..+...+... ...|++|+.||.|.... ....+..+. ..
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~--~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~---------l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDK---------LG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHH--HHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHH---------hC
Confidence 334456789999999998544443322 2222222211 12389999999998654 333222221 11
Q ss_pred hc---CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. .+.+.+ ...||.+++++.+++++|.+.+..
T Consensus 145 l~~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 145 LHSLRQRHWYI----QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred ccccCCCceEE----EeccCCCCCCHHHHHHHHHHHHhh
Confidence 11 111211 234778889999999998776543
No 117
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=1.4e-14 Score=107.94 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+++|..|+|||||++.+....... ...|+........ .....+.++||||... +....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~ 74 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLW 74 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHH
Confidence 34799999999999999999996443211 1223332222222 3566789999999432 22223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+|.+++-+.... .++..+..... ....|++|+.||+|+... ....++.+. + .+....
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~~~~~~ 145 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDA--MKAAEITEK-----L-GLHSIR 145 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccC--CCHHHHHHH-----h-CccccC
Confidence 3345678999999999854333332 23332221100 012389999999998643 222221111 0 000111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
...+. ....||.++.++++++++|.+.+
T Consensus 146 ~~~~~----~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 146 DRNWY----IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCcEE----EEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111 12357788899999999987654
No 118
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=1.1e-14 Score=106.82 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||++.+++..... ....++..........+ ...+.++||||.... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence 379999999999999999999765421 12222222222222223 245889999994321 2222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......++++++++....-+... ..++..+..... ....|+++++||+|........... .....+..
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 233456699999999874433332 233333333211 2224899999999986520011111 11122221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.. ..+..|+.++.+++++++.+.+.+.
T Consensus 136 ~~------~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 136 GV------PYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CC------eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 2345677788999999998876654
No 119
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=9.4e-15 Score=109.50 Aligned_cols=162 Identities=10% Similarity=0.054 Sum_probs=93.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
++..+|+++|+.|+|||||++.+....... ...|........ ......+.++||||.. .+...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-----~~~T~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-----TIPTIGFNVETV-EYKNLKFTMWDVGGQD-----------KLRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-----cCCccccceEEE-EECCEEEEEEECCCCH-----------hHHHH
Confidence 445799999999999999999996554321 122322222222 2356679999999932 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++|+|+++.-+..... ..+...+... ...|++|+.||.|.... ....+....... .
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~-------~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAR--EELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGL-------H 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCC-------C
Confidence 334456789999999997443333322 1222222211 12389999999998643 222221111000 0
Q ss_pred hcCC-eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+.. .+++ ...||.++.+++++++.|.+.+..
T Consensus 147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 1221 134777889999999998876654
No 120
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.64 E-value=1.1e-14 Score=126.99 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|+.++|||||+++|+|...-. ........|++.........++..+.++||||. +.+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-----------e~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-----------EKFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-----------HHHHHHHHH
Confidence 68999999999999999999854211 112234566655444333334567899999993 233344444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|++++|++++.+....+...+.++... +.+ ++++++||+|.... .++....+. +.+.......
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~- 138 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGF- 138 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCC-
Confidence 45678999999999977888877777766443 333 46789999998765 555544443 4444332210
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
-....++.|+.++.++++|++.|..+..+.
T Consensus 139 --~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 139 --AEAKLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 011234567788899999999998876653
No 121
>PRK11058 GTPase HflX; Provisional
Probab=99.64 E-value=1.2e-14 Score=121.60 Aligned_cols=165 Identities=18% Similarity=0.109 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
..|+|+|.+|||||||+|+|++....... ....|.+.............+.++||||+.... +...+ +.+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lv-e~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLV-AAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHH-HHHHHH-HH
Confidence 47999999999999999999997653111 112333333223332333478899999985421 12211 222222 22
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
....+|++++|+|+++..+...... .+++..+ ... ..|+++|+||+|+... ... . ... .. ...
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~-~~pvIiV~NKiDL~~~--~~~-~-~~~---------~~-~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH-EIPTLLVMNKIDMLDD--FEP-R-IDR---------DE-ENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC-CCCEEEEEEcccCCCc--hhH-H-HHH---------Hh-cCC
Confidence 3467899999999986655555432 3333333 221 2389999999998643 111 0 110 00 010
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. .+..||.++.++++|++.|.+.+..
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 10 1335788889999999999888754
No 122
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=1.1e-14 Score=106.80 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|..|||||||++.+...... . ...|......... .....+.++||||... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~----~~pt~g~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T----TIPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c----cCCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 7999999999999999999655432 1 1222222222222 3566789999999421 22223334
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
+.++|++++|+|.++..+..... +.+....... ...|++|+.||.|+... ....+...... +...-.+
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~------~~~~~~~ 134 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEAR--EELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLG------LHSLRNR 134 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhC------ccccCCC
Confidence 56789999999998544443332 2222222111 12389999999998644 22222222100 0000011
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
.+. ....||.++.+++++++.|.
T Consensus 135 ~~~----~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 135 NWY----IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CEE----EEEeeCCCCCCHHHHHHHHh
Confidence 111 13457888899999998774
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=1.7e-14 Score=106.66 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+++++|++|||||||++++++...... ...+.+.+....... ..+ ..+.++|+||.. .+...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVE-IKGEKIKLQIWDTAGQE-----------RFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHH
Confidence 47899999999999999999986654211 111111122211111 333 347889999932 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
........|++++++|.+...+.... .++..+....... .|++++.||+|.... ..+...+. +.+.+.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~~-------~~~~~~ 141 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQRA-------EEFSDA 141 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHHH-------HHHHHH
Confidence 23344567999999998754444332 3444444443323 278899999998654 33322111 122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ..+..|+.++.++.++++.|.+.
T Consensus 142 ~~~------~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 142 QDM------YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cCC------eEEEeeCCCCCCHHHHHHHHHHH
Confidence 111 12345677789999999988764
No 124
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=6.6e-15 Score=107.93 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.+++++|++|+|||||+++|++...... .....+.+........ .....+.++||||... +.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD--LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc--cCCcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhH
Confidence 3799999999999999999998764211 1112222221111111 1224589999999322 122222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
...+..|+++++++.++.-+.... .++..+...... ...|++++.||+|.... ...... ..++.....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~~~--~~~~~~--------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKENR--EVTREE--------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccccc--ccCHHH--------HHHHHHHcC
Confidence 334578999999999855454443 245555544322 22478999999998743 211111 112222221
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
-. ....++.++.++.++++.+.+.
T Consensus 137 ~~------~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 ML------FIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CE------EEEEecCCCCCHHHHHHHHHHh
Confidence 11 2334666778999999876553
No 125
>PTZ00369 Ras-like protein; Provisional
Probab=99.64 E-value=1.6e-14 Score=108.84 Aligned_cols=161 Identities=20% Similarity=0.131 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|.+|+|||||++.+.+.... .....|....... .. ......+.++||||..+. ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI----DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hhh
Confidence 479999999999999999999976542 1122222211111 11 112235788999995432 122
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
........+++++++|++++-|.... .++..+...... ...|++++.||+|.... ..+.... .....+.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~ 139 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS 139 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 22344577999999999865554443 344444443221 12389999999997543 2222100 1112222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... .+..||.++.+++++++.+.+.+.+
T Consensus 140 ~~~~------~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 140 FGIP------FLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred hCCE------EEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 2211 2345677889999999888766654
No 126
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.64 E-value=2.4e-14 Score=106.51 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+++++|..|||||||+..+.+.... .....|...........++ ..+.++||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CcCCCcceeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence 58999999999999999999876542 1222232221111111223 4578999999322 22222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc----CCchHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE 171 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~----~~~~~~~ 171 (228)
......+|+++++++++++-|.... .|+..+..... ..|++++.||+|+.... .......... ..+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence 3345688999999999866666654 35565554432 23899999999985430 2222221110 0112222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
+.+..... ..+..||.++.+++++++.+.+
T Consensus 143 ~~~~~~~~-----~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGAV-----KYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCCc-----EEEEecccccCCHHHHHHHHHH
Confidence 32222210 1135678888999999987764
No 127
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.64 E-value=7.4e-15 Score=107.57 Aligned_cols=158 Identities=14% Similarity=0.066 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|++|||||||++.+++...... ..|...............+.++||||... +...+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998765221 12222222222222345799999999431 11222233
Q ss_pred cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
...+|++++++|..+..+..... ++..+..... ....|+++++||+|.... ....+...... ..+.+...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~~~------~~~~~~~~ 135 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGA--LTAEEITRRFK------LKKYCSDR 135 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccC--cCHHHHHHHcC------CcccCCCC
Confidence 45679999999998544333322 2222221111 012389999999998543 22222111100 01112111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.. ..+..||.++.+++++++.|.+
T Consensus 136 ~~---~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 136 DW---YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cE---EEEecccccCCChHHHHHHHhc
Confidence 00 1234688889999999988753
No 128
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-14 Score=105.82 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~ 97 (228)
.+|+|+|.+|+|||-|+..+.+.....+ ...++..+......+.. ....+++|||.| ++.+ ...
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG------------QERFrtit 75 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDGKTIKLQIWDTAG------------QERFRTIT 75 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecceEEEEEeeeccc------------cHHHhhhh
Confidence 5899999999999999999998876322 22234444444443321 223589999999 3433 444
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
...++++|++|+|+|++..-|+... +|+..+........ |.+||.||+|+.+. ..+..... +++....
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~a-------~~fa~~~ 144 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEEA-------QEFADEL 144 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHHH-------HHHHHhc
Confidence 5678999999999999988888775 57888887766665 89999999998865 44432111 1222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 215 (228)
+-.. -...||+...++++.+..|...+..+....
T Consensus 145 ~~~~-----f~ETSAK~~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 145 GIPI-----FLETSAKDSTNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred CCcc-----eeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence 1111 234577778899999988877777654443
No 129
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.64 E-value=2.9e-16 Score=125.70 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=112.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
..-+++..++|+|+||||||||+++|+|...+.+| .+......... ........++.+.|.++...+..+.+ +
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G----~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l-~ 100 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENL-E 100 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHH-H
Confidence 34456789999999999999999999999875443 33332221111 01123346788888887776654443 3
Q ss_pred HHHHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 92 EIVKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 92 ~~~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.+..+.... ...++.++-.+.. -..+|.|+++++.++.+++++|. +++ |++.+|.... ..+
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~---lliLDEPt~GLDp~~~--~~~ 175 (293)
T COG1131 101 FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE---LLILDEPTSGLDPESR--REI 175 (293)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC---EEEECCCCcCCCHHHH--HHH
Confidence 223322211 0112222222211 14799999999999999999984 555 9999999887 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.+.++++. +|.+.++...|+..+++.+|.+...
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 77776654 8999999999999999998876654
No 130
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=2.5e-15 Score=108.00 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|++|+|||||+|++++... . ...|.... ... .++||||.... .+++.+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----~--~~~t~~~~------~~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----L--YKKTQAVE------YND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----c--cccceeEE------EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999998753 1 11221111 111 58999995311 12233333234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
.+++|++++|+|+++..+.....+++. .. +|+++++||+|+... ....+. ..+..+....
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~-- 119 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEA--DVDIER--------AKELLETAGA-- 119 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCc--ccCHHH--------HHHHHHHcCC--
Confidence 678999999999986666554433322 12 279999999998643 211111 1122222111
Q ss_pred EEeeCCCcccccchHHHHHHHHHHH
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
...+..||.++.+++++++.+.
T Consensus 120 ---~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 120 ---EPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ---CcEEEEecCCCCCHHHHHHHHh
Confidence 1223457778899999988763
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.64 E-value=4.8e-15 Score=110.59 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccc-c-----cCC-------CCCcceeeEeEeee----eeCCcEEEEEeCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFK-A-----SAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~-~-----~~~-------~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~ 82 (228)
++|+++|..|+|||||+++|++..... . ... ....+......... ......+.++||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998742100 0 000 00112111111111 123445889999996542
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~ 162 (228)
...+. .....+|++++|+|+..+.+......+..+.. .. .|+++++||+|.... . .....+
T Consensus 81 -------~~~~~----~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 81 -------SYEVS----RSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred -------HHHHH----HHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC--C-HHHHHH
Confidence 12222 23346799999999986666665554433321 12 379999999998543 2 111111
Q ss_pred ccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
. +.+... +. ....+..||.++.++++|++.+.+.++
T Consensus 142 ~-----~~~~~~-~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 Q-----IEDVLG-LD-----PSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred H-----HHHHhC-CC-----cccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1 211111 11 012346688888999999998877653
No 132
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=2.4e-14 Score=105.97 Aligned_cols=162 Identities=18% Similarity=0.096 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+|+|++|||||||++++++...... .......+....... ..+ ..+.++|+||... +.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVT-VDDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 799999999999999999998764111 111222221111111 223 3467999999321 122222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHH
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~ 174 (228)
...+.+|++++++++....+.... .+...+..... .+...|++++.||+|.... ... .+.++ .+.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~--------~~~~ 137 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQ--------QWCQ 137 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHH--------HHHH
Confidence 344678999999999855444433 23333333222 1123489999999999742 111 11111 1222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.... ...+..|+.++.+++++++.+.+.+.+.
T Consensus 138 ~~~~-----~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 138 SNGN-----IPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HcCC-----ceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2211 1223456677899999999988776654
No 133
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=2.6e-14 Score=109.57 Aligned_cols=163 Identities=14% Similarity=0.104 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|+.|+|||||++.+++...... ...+...+.......... ...+.++||||.. .+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHHH
Confidence 6899999999999999999998764211 111222222222222112 2458899999932 122222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......|++++++|+++.-|.... .++..+...... ...|++++.||.|+... ..+.. ....++.+..
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHHh
Confidence 2345678999999999865555543 355555444322 11267889999998653 22211 0122233332
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.-. .+..|+.++.++.++++.|.+.+.+.
T Consensus 140 ~~~------~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 140 GMK------YIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCE------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 22456777899999999887766543
No 134
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=3.9e-14 Score=108.66 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=96.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
++.....+|+|+|+.|+|||||+++|++... ... ......+....... .. ...+.++||||...
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~---------- 74 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER---------- 74 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEE-ECCEEEEEEEEECCCchh----------
Confidence 3344457999999999999999999998754 111 11112222112222 22 24578999999432
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~ 169 (228)
+........+.+|++++++|+++.-+..... +...+... ......|+++|.||+|+... ..+... ..
T Consensus 75 -~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~ 143 (211)
T PLN03118 75 -FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESE--RDVSRE-------EG 143 (211)
T ss_pred -hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccc--CccCHH-------HH
Confidence 1222223345779999999998655555543 32333222 21112378899999998644 322110 01
Q ss_pred HHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.++....... .+..++.++.+++++++.|.+.+.+.
T Consensus 144 ~~~~~~~~~~------~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 144 MALAKEHGCL------FLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 1222211111 13456777899999999998777653
No 135
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=4.4e-14 Score=103.58 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=90.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeee---eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
+|+++|.+|+|||||++.+++.... .....|..... ..... .....+.++||||. +++..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~ 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT----KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ-----------EEFDA 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-----------HHHHH
Confidence 7999999999999999999987542 11122322221 11111 12345899999992 22233
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
......+..|++++++++++.-+.... .++..+...... .|++++.||+|.... ..+.. + ....+.+
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~---~p~iiv~nK~Dl~~~--~~v~~--~-----~~~~~~~ 134 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD---IPMVLVQTKIDLLDQ--AVITN--E-----EAEALAK 134 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhcccc--cCCCH--H-----HHHHHHH
Confidence 333445688999999999855444443 344444443322 389999999998654 22211 0 1222333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
...-. .+..|+.++.+++++++.|..
T Consensus 135 ~~~~~------~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 135 RLQLP------LFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HcCCe------EEEEECCCCCCHHHHHHHHHH
Confidence 22222 234566677889999987754
No 136
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.63 E-value=6.5e-15 Score=107.78 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+|+|+.|+|||||+++|....... ...|......... .....+.++||||... +.......
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-----TIPTIGFNVETVT-YKNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-----cCCccCcCeEEEE-ECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 58999999999999999997665421 1222222222222 3556789999999432 12222334
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHH-HHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 101 KDGIHAFLVVFSVTNRFSQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~-~~~l-~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
...++++++++|+++..+... .+.+ .++.... ...+|+++++||+|.... ....+.... +. . .....
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 457899999999984433222 2222 2222111 012489999999998654 222221111 00 0 00000
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.. ...++.|+.++.+++++++.+.+
T Consensus 133 ~~---~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 133 RT---WSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred Cc---EEEEEeeccCCCCHHHHHHHHhc
Confidence 00 02346688889999999988753
No 137
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=2.3e-14 Score=104.11 Aligned_cols=162 Identities=24% Similarity=0.179 Sum_probs=93.0
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 027090 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (228)
Q Consensus 24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (228)
|+|+.|+|||||+|+|++......+ .....+...............+.++||||+.+............ ......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 5899999999999999987653221 11222323232222222256799999999887654433211122 223346
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe
Q 027090 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 104 ~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
+|.++++++.....+.....++.... ... .|+++++||+|.... .......+. ........ ..
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~---~~~--~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~-----~~ 138 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLR---ERG--KPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLL-----LG 138 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---hcC--CeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccc-----cC
Confidence 79999999998666665555222221 112 379999999998866 444433210 00000000 01
Q ss_pred eCCCcccccchHHHHHHHHHHHHH
Q 027090 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
...+..++.++.++.++++.+.+.
T Consensus 139 ~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 139 LPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CceEEEeeeccCCHHHHHHHHHhh
Confidence 122334556667889998887654
No 138
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.63 E-value=2.9e-14 Score=110.75 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=56.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+++|+|++|+|||||+|+|+|.... ....+.++...........+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 6899999999999999999997632 223333333222222335677899999999876442221111222 233
Q ss_pred cCCccEEEEEEeCC
Q 027090 101 KDGIHAFLVVFSVT 114 (228)
Q Consensus 101 ~~~~~~il~v~~~~ 114 (228)
.+.+|+++++++++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 45779999999876
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=4.6e-14 Score=104.56 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH-
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~- 94 (228)
.+|+++|++|+|||||++.+++..... ....+.. ....... ..+ ..+.++||||.. ++.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPE----RTEATIGVDFRERTVE-IDGERIKVQLWDTAGQE-----------RFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC----ccccceeEEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence 589999999999999999998766421 1122222 1111111 223 468899999932 111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+.+|++++++|++++-|..... ++..+...... ...|++++.||+|.... ..+... ...++.
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~-------~~~~~~ 136 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ--IQVPTD-------LAQRFA 136 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh--cCCCHH-------HHHHHH
Confidence 12334456789999999998666665543 45455443221 12389999999998654 332211 112222
Q ss_pred HhcCCeEEEeeCCCcccccc---hHHHHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI 208 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~ 208 (228)
+...-.++ ..||.+ ..++.+++..+.+.+
T Consensus 137 ~~~~~~~~------e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 137 DAHSMPLF------ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHcCCcEE------EEeccCCcCCCCHHHHHHHHHHHh
Confidence 22221222 234444 678888887766544
No 140
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=8.6e-14 Score=107.08 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
...+|+++|+.|+|||||++.|++..... ....|.... ...... .....+.++||||. ..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~----~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~-----------~~~~ 75 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL----ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ-----------ERYR 75 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCceeEEEEEEEEEECCEEEEEEEEECCCc-----------HHHH
Confidence 34799999999999999999999876521 112232222 122211 12236889999992 2223
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+..+++++++|+++.-+.... .|+..+....... .|++++.||+|+... ..+.... .+.+.
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~-------~~~l~ 144 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED-------GQALA 144 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH-------HHHHH
Confidence 3334455678999999999866565554 4666665543322 389999999998543 3222111 11222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....- ..+..+|.++.+++++++.+...+..
T Consensus 145 ~~~~~------~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 145 EKEGL------SFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HHcCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22111 12344667778899999888666544
No 141
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=3.9e-14 Score=103.03 Aligned_cols=153 Identities=20% Similarity=0.169 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-ee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|++|+|||||+|.+++...... ...|......... .. ....+.++|+||.. .+....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----------~~~~~~ 66 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-----------RFRSIT 66 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChH-----------HHHHHH
Confidence 799999999999999999998876222 1222222222111 11 23458899999942 222233
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+.+|++++++++...-+... ..++..+....... .|+++++||+|..... ....+. ++++....
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 135 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKEN 135 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHHc
Confidence 344567899999999984333333 23444444443222 3899999999986220 212222 22233322
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
...+ +..++.++.++.++++.|.
T Consensus 136 ~~~~------~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 136 GLLF------FETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCeE------EEEecCCCCCHHHHHHHHh
Confidence 2222 3345556678888888764
No 142
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4.2e-14 Score=106.47 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|+.|+|||||++.+++..... ....+.+.+........ .....+.++||||.. .+......
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~-----------~~~~~~~~ 68 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE-----------RFRSLNNS 68 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH-----------HHHhhHHH
Confidence 79999999999999999999876521 11112222222122211 112357899999932 22223334
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
....+|++++++|.+++-|.... .++..+....... .|++++.||.|.... ..+.... ...+.+...-
T Consensus 69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~~ 137 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSLNI 137 (188)
T ss_pred HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHcCC
Confidence 45678999999999865555443 3555555443322 379999999998744 3222111 1112221111
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..+..++.++.+++++++.+.+.+..+
T Consensus 138 ------~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 138 ------PFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred ------eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 123456667789999998877766553
No 143
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.63 E-value=1.5e-14 Score=106.34 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+++|.+|+|||||++.+....... ....|.. ....... .++ ..+.++||||..... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE----KYDPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCchhheEEEEEE-ECCEEEEEEEEECCCccccc-----------ch
Confidence 589999999999999999988765421 1122221 1111111 222 347899999953321 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|+++++++.++.-|.... .++..+..... ....|++++.||+|+... ..+... ....+.+.
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSA-------EGRALAEE 135 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHH-------HHHHHHHH
Confidence 12233467999999999855554443 34444444322 122489999999998543 222110 01112221
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ..+..||.++.++.++++.+.+.
T Consensus 136 ~~~------~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 136 WGC------PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred hCC------EEEEecCCCCCCHHHHHHHHHHh
Confidence 111 12345777889999999887654
No 144
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=1.7e-14 Score=109.02 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+|+|++|+|||||++.+++..... + ....|....... .....+ ..+.++||||... +....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-G--PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER-----------YEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-c--CcccceeeEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence 79999999999999999999775421 1 122232222211 111223 3467999999432 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++++++.-|... ..+++.+..... ..|+++|.||+|+... ......+. .....++....
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~~ 139 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADEI 139 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccccc--ccccCccC---HHHHHHHHHHc
Confidence 234457899999999985544443 235555554322 2389999999997543 21100000 01122222221
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... .+..|+.++.+++++++.+.+.+..
T Consensus 140 ~~~------~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 140 KAQ------HFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111 1344777889999999988876644
No 145
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=3.6e-14 Score=106.32 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--EeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+|+++|..|+|||||++.+.+.... ..+..|..... .... .++ ..+.++||+|-. .+...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~----~~~~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD----EDYIQTLGVNFMEKTIS-IRGTEITFSIWDLGGQR-----------EFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEE-ECCEEEEEEEEeCCCch-----------hHHHh
Confidence 7999999999999999999876542 12233332222 1122 233 458999999932 22233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccch-hhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 174 (228)
.....+.+|++++++|++++-|.... .|++.+....... .| ++|.||+|+..... ...+...+. ..++.+
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~ 137 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAK 137 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHHH
Confidence 34456788999999999876666654 3566555442222 24 67899999853200 111111111 223333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..+. ..+..||.++.+++++++.+.+.+.+
T Consensus 138 ~~~~------~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 138 AMKA------PLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HcCC------EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2221 12345778889999999988766654
No 146
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=2.1e-14 Score=108.28 Aligned_cols=170 Identities=9% Similarity=-0.040 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+++|++|||||||+++|++..... ...|........ ...+..+.++|+||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i-~~~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEEL-TIGNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEE-EECCEEEEEEECCCCHH-----------HHHHH
Confidence 45789999999999999999999865411 112222222222 24567789999999321 11222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHHh
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
....+.++++++++|..+.-+... ..++..+..... ....|+++++||+|..... ...+..++.... ....+....
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-LANVPFLILGNKIDLPGAVSEEELRQALGLYG-TTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-ccCCCEEEEEeCCCCCCCcCHHHHHHHhCccc-ccccccccc
Confidence 233456799999999974323222 222222222111 1224899999999986430 122222222100 000000000
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
....... ...+..||.++.++.++++.+.+.
T Consensus 159 ~~~~~~~-~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRP-IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCcee-EEEEEeEecCCCChHHHHHHHHhh
Confidence 0000000 012456888899999999988653
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=4e-14 Score=107.20 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC-cccccC-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
++|+++|..|+|||||+++|++.. .+.... .....+....... ...+...+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~-~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA-VTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE-EEECCEEEEEEECCCcHH----
Confidence 689999999999999999998621 111110 0011222211111 224566789999999432
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+...+......+|++++|+++.++.......++..+.. .. .|+++++||+|....
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22233334457799999999985544444343333322 12 378999999998643
No 148
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=2.1e-14 Score=106.14 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|+.|||||||++.+++... . ....|......... .+...+.++|+||.. .+.......
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~---~~~~t~g~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--K---KVAPTVGFTPTKLR-LDKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--c---cccCcccceEEEEE-ECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 479999999999999999998622 1 11222222222222 456778999999932 122222334
Q ss_pred cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
...+|++++|+|.++..+..+. .++..+..... ....|++++.||.|.... ....+..+... +.++.+.....
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~~---l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYLS---LEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhcC---cccccCCCCce
Confidence 4677999999999854444433 23333332211 122489999999998765 43443333211 11111111112
Q ss_pred EEEeeCCCcccccch------HHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGT------EQVRQLLSLVNS 206 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~------~~~~~l~~~i~~ 206 (228)
+.+ ...+|.++ .++.+.+++|..
T Consensus 138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEE----EEeEceeCCCCccccCHHHHHHHHhc
Confidence 222 22345554 688888888753
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.62 E-value=1e-14 Score=108.56 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+++|++|+|||||++.|++...... ..|....... ...+...+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEE-IVYKNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEE-EEECCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987654211 2222222222 224566799999999432 222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
....++|++++|+|.++.-+.... ..+..+..... ....|+++++||+|.... ....+..+.+.. ..+.
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~-------~~~~ 147 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISESLGL-------TSIR 147 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCc-------cccc
Confidence 334578999999999854333222 22222221111 012489999999998643 222221111000 0011
Q ss_pred -CeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
..+ .....||.++.+++++++.|.
T Consensus 148 ~~~~----~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 148 DHTW----HIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCce----EEEecccCCCCCHHHHHHHHh
Confidence 111 123568888899999998874
No 150
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.62 E-value=1.6e-14 Score=105.49 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|+.|||||||++++++... ......++........... ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF----VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998764 2222223222222222223 24578999999332 222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhc
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 176 (228)
......|+++++++.++.-+.... .++..+...... ...|++++.||+|.... ... .+. ........
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~--~~~~~~~--------~~~~~~~~ 134 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE--RQVSKEE--------GKALAKEW 134 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc--ceecHHH--------HHHHHHHc
Confidence 334567999999998754444333 334444443331 12389999999998753 211 111 12222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.. .....++.++.+++++++.|.+.
T Consensus 135 ~~------~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 135 GC------PFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CC------cEEEeccCCCCCHHHHHHHHHhh
Confidence 21 22345666778999999887653
No 151
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=2.6e-14 Score=106.80 Aligned_cols=163 Identities=20% Similarity=0.213 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|++|+|||||++.+++..... ....|+...........+ ..+.++||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE----SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc----ccCcchhhhEEEEEEECCEEEEEEEEECCChHh-----------hHHHH
Confidence 589999999999999999999776421 112222111111111222 3478999999432 12222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......++++++++.+..-+..... ++..+...... ...|++++.||+|.... +.+... ....+.+..
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence 23344679999999998544444333 23333332221 12389999999998643 222110 112222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
.. .....|+.++.++.++++.+.+.+.....
T Consensus 137 ~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 137 GA------AFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred CC------eEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 21 12345667778999999998887776543
No 152
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=6e-14 Score=106.62 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=95.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..+|+|+|+.|+|||||++.+.+.... .....|.. ........ .....+.++||||... +..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~ 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS----GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-----------FRT 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-----------HHH
Confidence 479999999999999999999987641 11122222 11111111 1123578999999321 122
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........++++++|+|++++-|.... .++..+...... .|++++.||+|+... ..+... ....+.+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~ 138 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD---VCKVLVGNKNDDPER--KVVETE-------DAYKFAG 138 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence 223344567999999999866555543 355555444322 378999999998654 222110 1112222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.... .....|+.++.++.++++.|.+.+...
T Consensus 139 ~~~~------~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 139 QMGI------SLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred HcCC------EEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 2221 123456677899999999887766653
No 153
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=4.6e-14 Score=104.43 Aligned_cols=161 Identities=16% Similarity=0.038 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
...+|+++|++|+|||||++.+++....... ....+.+........ .....+.++||||. +.+...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~-----------~~~~~~ 70 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ-----------ERFRSL 70 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCCh-----------HHHHHh
Confidence 4479999999999999999999876542111 111111111111111 12235788999992 222233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.....+.+|+++++++++++-|.... .++..+..... .+...|++++.||+|+... ...... .+++.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (170)
T cd04116 71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAWC 140 (170)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHHH
Confidence 33445678999999999855444443 24444433322 1122489999999998643 111111 22232
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
+..... ..+..||.++.++.++++.+.+
T Consensus 141 ~~~~~~-----~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 141 RENGDY-----PYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHCCCC-----eEEEEECCCCCCHHHHHHHHHh
Confidence 222111 1134567778899999887654
No 154
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.61 E-value=1.3e-13 Score=106.05 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|..|+|||||++.+++...+ ..+..|....+......+ ...+.+|||+|- .++....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~-----------e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----GSYVPTVFENYTASFEIDKRRIELNMWDTSGS-----------SYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----CccCCccccceEEEEEECCEEEEEEEEeCCCc-----------HHHHHHh
Confidence 48999999999999999999987652 122333322221111122 345889999992 2233334
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK 170 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~ 170 (228)
...++.+|++++|+|.++.-|.... .|...+...... .|++||.||+|+... ......+.... .....
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~---~piiLVgnK~DL~~~--~~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPN---AKVVLVGCKLDMRTD--LATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEECcccccc--hhhhhhhhhccCCccCHHHHH
Confidence 4567889999999999976666554 244444433322 389999999998653 22111111100 11222
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 210 (228)
.+.+..... ..+..||.+..+ +.++++....+.-.
T Consensus 142 ~~ak~~~~~-----~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 142 VLAKQVGAV-----SYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred HHHHHcCCC-----EEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 333222211 112346666665 99999877665443
No 155
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=5.1e-14 Score=106.95 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|.+|+|||||++.+++..... ....|.. ....... ..+ ..+.++||||.... ....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP----KYRRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSF-----------PAMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc----cCCCchhhheeEEEE-ECCEEEEEEEEECCCchhh-----------hHHH
Confidence 58999999999999999999876421 1122221 1111111 223 45789999994432 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++|+.+..+..... ++..+...... ...|++++.||+|..... ..+.. ... .+......
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~-~~~-----~~~~~~~~ 136 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPA-KDA-----LSTVELDW 136 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccH-HHH-----HHHHHhhc
Confidence 23445789999999998554544433 33444443321 224899999999986420 21111 000 11110000
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. ...+..++.++.++.++++.+.+.+..
T Consensus 137 ~------~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 137 N------CGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred C------CcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 1 112345778889999999998887664
No 156
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=2.6e-14 Score=107.33 Aligned_cols=166 Identities=10% Similarity=-0.039 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+++|.+|||||||++.+.+.... .. ..|........ ...+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~---~~t~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QH---QPTQHPTSEEL-AIGNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccccceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence 34479999999999999999999987541 11 11222222221 23466789999999432 1222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCcc-chhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++|+|+++.-+.... ..+..+..... ....|++++.||+|.... ..+++.+.+.- .+...
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 23344678999999999743222222 12222221110 012389999999998533 01333333321 00000
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.+...-.-.......++.++.++++++++|..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000000111345577788999999998864
No 157
>PLN03108 Rab family protein; Provisional
Probab=99.61 E-value=3.7e-14 Score=108.64 Aligned_cols=161 Identities=13% Similarity=0.084 Sum_probs=91.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||++.+++...... ...+...+....... ..+ ..+.++||||.. .+...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~-~~~~~i~l~l~Dt~G~~-----------~~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMIT-IDNKPIKLQIWDTAGQE-----------SFRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence 36899999999999999999998754211 111222111111111 222 357899999932 11222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++++++.+.-+.... .++..+....... .|++++.||+|+... ..+.. ....++.+.
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHR--RAVST-------EEGEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc--cCCCH-------HHHHHHHHH
Confidence 22334577999999999855555543 4555444433222 389999999998654 22110 011122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..-. .+..++.++.++.++++.+.+.+-.
T Consensus 141 ~~~~------~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 141 HGLI------FMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred cCCE------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 2344666778899988766554443
No 158
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.61 E-value=1.5e-14 Score=111.12 Aligned_cols=112 Identities=22% Similarity=0.135 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|..|+|||||++.+++..... ...|....... .......+.++||||.... .......
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-----~~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~-----------~~l~~~~ 64 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-----TVSTVGGAFYL-KQWGPYNISIWDTAGREQF-----------HGLGSMY 64 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-----CCCccceEEEE-EEeeEEEEEEEeCCCcccc-----------hhhHHHH
Confidence 79999999999999999999876521 12222222221 1234456899999994321 1112233
Q ss_pred cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
...+|++++|+|++++-|..... ++..+....... .|++||.||+|+..
T Consensus 65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 56789999999999766666653 333333322222 37999999999864
No 159
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=5.8e-14 Score=103.76 Aligned_cols=161 Identities=20% Similarity=0.133 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|||||||++++.+.... .....|............ ...+.++||||.... ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI----ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence 58999999999999999999876642 112223222211111122 246789999995432 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
.......++++++++.+++-+..... +...+...... ...|++++.||+|.... +.+.... ...+.+..
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~--~~~~~~~-------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD--RQVSRED-------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHc
Confidence 22334668999999998544444333 44444443221 22489999999998654 3221100 11122211
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... ..+..||.++.++.++++.+...+.+
T Consensus 137 ~~~-----~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 137 GNV-----PFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred CCc-----eEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 111 12346778889999999988765543
No 160
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=9.5e-15 Score=108.55 Aligned_cols=164 Identities=19% Similarity=0.105 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+++++|+.|+|||||++.+.+.... .....|...........++ ..+.++||||... +....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hcccc
Confidence 37899999999999999999876542 2223333221111111223 4578999999422 22222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccC-CchHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHEC-PKPLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~-~~~~~~~~ 173 (228)
......+|+++++++.+++-|.... .++..+...... .|++++.||+|+... ..+ ..+..... .-...+..
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPK---APIILVGTQADLRTD--VNVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEeeChhhccC--hhHHHHHhhcCCCCcCHHHHH
Confidence 3345688999999999866565543 455555543222 389999999998643 221 11111100 00111222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
..+.... ....+..||.++.+++++++.+.
T Consensus 141 ~~a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 141 ALAEKIG--ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2221100 00123457778899999987653
No 161
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.60 E-value=3.2e-14 Score=104.78 Aligned_cols=160 Identities=17% Similarity=0.171 Sum_probs=89.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|++|+|||||++.+++... .+ ....+...........++ ..+.++||||...... ......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERS-- 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--cc--ccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHH--
Confidence 489999999999999999886543 11 112222111111111233 3478999999653110 111222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.+.+|++++++|+++.-|.... .++..+..........|++++.||+|.... +.+... ....+.+...
T Consensus 69 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~ 137 (165)
T cd04146 69 --IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG 137 (165)
T ss_pred --HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence 2356999999999866555543 345555543210112489999999997543 222110 1112222222
Q ss_pred CeEEEeeCCCcccccch-HHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVIV 209 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~ 209 (228)
..+ +..|+.++ .+++++++.+.+.+.
T Consensus 138 ~~~------~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 138 CLF------FEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CEE------EEeCCCCCchhHHHHHHHHHHHHh
Confidence 111 23455666 489999998876553
No 162
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.3e-14 Score=112.19 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
-|+++|-+++||||||+.++..+. ....++.||-.+....... .+..+.+.|.||+.+....-.-+..++.+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 378999999999999999998764 4567788888877766554 455699999999999888777777788887775
Q ss_pred ccCCccEEEEEEeCCCC---CCHHHHHHHH-HHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 100 AKDGIHAFLVVFSVTNR---FSQEEETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~---~s~~~~~~l~-~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+ .++++++|++.. -...+.+.+. .+.+.-..-..||.++|+||+|.... .++++...+. +.+.
T Consensus 238 t----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~~ 304 (369)
T COG0536 238 T----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAEA 304 (369)
T ss_pred h----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHHh
Confidence 5 889999999721 1133334333 33332122234689999999995443 0344333332 3333
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+......+ .|+.+++++++|...+.+++.+..
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHhh
Confidence 33322221 577788899999988888877753
No 163
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.60 E-value=2.6e-14 Score=113.46 Aligned_cols=149 Identities=23% Similarity=0.317 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCCCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCCcHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.+|+|+|.+|+|||||||+|++........ .....+.......... .++ ..+.++||||+++.......+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~- 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW- 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh-
Confidence 689999999999999999999986533320 0111222222221111 122 358999999999865433222
Q ss_pred HHHHHHH--------hh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 91 KEIVKCL--------GM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 91 ~~~~~~~--------~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+.+..++ .. ...++|++||+++.+ .+++..+.+.|+.+... . ++|-|++|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence 2222222 11 124789999999986 57888888877666544 3 78889999999988
Q ss_pred chhhHHHHhhccCCchHHHHHHhcCCeEEE
Q 027090 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
+++..+... +.+.++..+-.++.
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFD 180 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S--
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeec
Confidence 888877776 55555554444433
No 164
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=5.1e-14 Score=108.66 Aligned_cols=158 Identities=20% Similarity=0.110 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+++|++|+|||||++.+++...... ....+. +....... ......+.++||||... .. . .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~-~---~-- 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDH---AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WT-E---D-- 66 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCcc---CcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HH-H---h--
Confidence 799999999999999999976544201 111111 11111111 11334588999999540 10 1 1
Q ss_pred hhccC-CccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 GMAKD-GIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~~~~~-~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.... .+|++++|++++++-|.... +++..+.... .....|+++|.||+|+... +.+.... ...+...
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~~-------~~~~a~~ 135 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQE-------GRACAVV 135 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHHH-------HHHHHHH
Confidence 1223 77999999999865555433 3444444432 1122489999999998654 3322110 1122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+.. .+..||.++.+++++++.+.+.+..
T Consensus 136 ~~~~------~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 136 FDCK------FIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cCCe------EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 1111 2345777889999999999887763
No 165
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.60 E-value=5.6e-14 Score=122.18 Aligned_cols=166 Identities=18% Similarity=0.181 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
+|+++|+.++|||||+++|+|...-. ......+.|.+....... ..+..+.++|+||. +.+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGh-----------e~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGH-----------EKFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCH-----------HHHHHHHHh
Confidence 79999999999999999999854210 111233455555443333 34577899999992 233444444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|++++|++++++........+.++.. .+-+ ++++++||+|.... ..+....+. ++++.......
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~~ 138 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIFL 138 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCCC
Confidence 5567899999999987666666666665543 2322 49999999999765 544433333 33333322100
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.....++.|+.++.+++++.+.+...+...
T Consensus 139 --~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 139 --KNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred --CCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 001234557778899999999888877664
No 166
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=112.03 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE-EEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.++++|-+++|||||+|+|+..+. .+..+..||-.+......++... +++.|.||+......+.-...++.+.++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 578999999999999999998764 45667778777666655455443 99999999999888888777778777765
Q ss_pred ccCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 100 AKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~--~s~~~-~~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+ +.++||+|.+.. .+..+ .+.|..-...... -..+|.++|.||+|..+.- ... + +++.+.
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~---l--------~~L~~~ 338 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNL---L--------SSLAKR 338 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHH---H--------HHHHHH
Confidence 5 899999999843 13333 2332222222222 2335899999999985320 111 2 223333
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.... ..++.+|.+++++.+|++.|..
T Consensus 339 lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 LQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 3222 2355677788999999887754
No 167
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.60 E-value=1.2e-14 Score=107.49 Aligned_cols=162 Identities=18% Similarity=0.080 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|||||||+++|++...... ...+........... ....+.++||||..... ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE----YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence 3799999999999999999998865211 112221111111112 23458999999955321 111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh----ccCCchHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKPLKE 171 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~----~~~~~~~~~ 171 (228)
....+.+|+++++++.++.-+... ..++..+..... ..|+++++||+|.... ......+. ........+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 123357799999999985444433 234555544433 2489999999998765 33221100 000001112
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
+...... ...+..|+.++.++.++++.|.+
T Consensus 141 ~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAKEIGA-----IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHhCC-----eEEEEeecCCCCCHHHHHHHHhh
Confidence 2222211 02234466677899999988764
No 168
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=5.6e-15 Score=114.32 Aligned_cols=167 Identities=14% Similarity=0.025 Sum_probs=105.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCC---CCC--------cceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSG--------VTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~---~~~--------~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 82 (228)
..-+++..++|+||||||||||+++|+|...+..|.- ..+ ......+..........+.+.|.--++..
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 3445678999999999999999999999877555411 100 11112222222222334666676433322
Q ss_pred CC------CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 83 SA------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 83 ~~------~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+. ..++-.+.+..++... +..-+..+.-..+|+|++|++.+++++..++ ++++ |.|++|....
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLDEPTs~LDi~~Q- 174 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLDEPTSHLDIAHQ- 174 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeCCCccccCHHHH-
Confidence 21 1111001222233221 2222222333589999999999999999888 4666 9999999877
Q ss_pred hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
-++.+.++++. .|+++...++|++.+.+.+|.+..
T Consensus 175 -~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 175 -IEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 77777666554 689999999999999999887654
No 169
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.60 E-value=1.9e-14 Score=105.18 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=88.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|..|||||||++++++... . ....|......... .....+.++|+||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~----~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-V----TTIPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-C----CCCCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998863 1 11222222222222 45667999999994321 1122233
Q ss_pred cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
...+|++++++|+...-+.... .++..+..... ....|+++++||+|.... .......+. +.... .....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~-~~~~~ 134 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK-ILGRR 134 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh-ccCCc
Confidence 4567999999999844233322 23333322211 112389999999998765 322221111 00000 01111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
+ .....++.++.+++++++.|..
T Consensus 135 ~----~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 135 W----HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred E----EEEEeeCCCCCCHHHHHHHHhh
Confidence 1 1233466777899999887653
No 170
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=2.8e-14 Score=111.68 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|..|+|||||++.+++..... ....|+..........++ ..+.++||+|.... .....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~----~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-----------~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE----QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-----------PAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC----CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-----------hHHHH
Confidence 79999999999999999998765421 223333211111111233 45789999994321 11112
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhC-------ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~-------~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
......|++++|+++++.-|..... +++.+..... .....|++++.||+|+... ..+. .. .+.
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~--~~-----ei~ 137 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQ--RD-----EVE 137 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccC--HH-----HHH
Confidence 2345679999999998665655443 4444433210 1123489999999998643 2211 00 122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+....... + ..+..||.++.+++++++.|..+..-
T Consensus 138 ~~~~~~~~-~----~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 138 QLVGGDEN-C----AYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred HHHHhcCC-C----EEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 22211110 1 12345777889999999999876643
No 171
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.59 E-value=1.8e-14 Score=108.42 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+++|+|++|+|||||++.+....... ....|............+ ..+.++||||...... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----------~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-----------LR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCcccceEEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence 489999999999999999998554321 112222222211111222 3478999999543211 11
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh-hccC-CchHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-GHEC-PKPLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~-~~~~-~~~~~~~~ 173 (228)
......+++++++++++..-+.... .|+..+.....+ .|++++.||+|+.... ....... ...- ......+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 1233577999999999855555543 366666654333 3899999999975420 1110000 0000 00111222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+..+.. ..+..||.++.+++++++.+.+.+..
T Consensus 143 ~~~~~~-----~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 143 KEIGAK-----KYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred HHhCCc-----EEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 222111 12345788899999999988766554
No 172
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=2.6e-14 Score=109.31 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEeEeeeeeCCcEE
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (228)
+|+|+|+.|+|||||+++|+...-.... ......|.+...... ...+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence 5899999999999999999754321000 001233443333332 2466789
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
.++||||.. ++...+......+|++++|+|+..+..........++.. .+.+ ++++++||+|...
T Consensus 80 ~liDTpG~~-----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHE-----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHH-----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence 999999942 222222233457899999999986665555544444432 2322 5788999999864
No 173
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.2e-14 Score=102.02 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+++++|..++||||||+..+-..+ ......++..++...... ..+. .+++|||+| +|.++++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~f--d~~YqATIGiDFlskt~~-l~d~~vrLQlWDTAG------------QERFrsl 87 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKF--DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAG------------QERFRSL 87 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhh--cccccceeeeEEEEEEEE-EcCcEEEEEEEeccc------------HHHHhhh
Confidence 6899999999999999999986655 223333445555554443 3333 589999999 5655554
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 -GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 -~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
....+++.+++.|+|++++-|.+.. +|++-++..-+... -.++||.||.|+... +++...-.. ...+.
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~eEg~-------~kAke 157 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSIEEGE-------RKAKE 157 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhHHHHH-------HHHHH
Confidence 4667899999999999989898865 68888887755431 146668899999876 655432111 22222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+. .+ +..+|..+.++.+|+.+|..++++.
T Consensus 158 l~a---~f---~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 158 LNA---EF---IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred hCc---EE---EEecccCCCCHHHHHHHHHHhccCc
Confidence 222 11 2346778899999999998888764
No 174
>COG2262 HflX GTPases [General function prediction only]
Probab=99.58 E-value=7.7e-14 Score=112.79 Aligned_cols=165 Identities=22% Similarity=0.176 Sum_probs=104.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.-..|+++|-+++|||||+|+|++...+.... ...|.+.........+++.+.+-||-||....- ..+..+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP------~~LV~AF 262 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP------HPLVEAF 262 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcccCC------hHHHHHH
Confidence 34689999999999999999999987643321 122322222333334577899999999986532 2232222
Q ss_pred h---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 98 ~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
. .....+|+++.|+|++++......+...-+..-++-.. .|+++|+||+|.... ...... +..
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~--~~~~~~-----------~~~ 328 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLED--EEILAE-----------LER 328 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCc--hhhhhh-----------hhh
Confidence 2 23457899999999996633333333333333332221 489999999998866 432111 111
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
... ..+..||.++.+++.|.+.|.+.++..
T Consensus 329 ~~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 329 GSP-------NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cCC-------CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 111 234567888899999999999988853
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.57 E-value=1.7e-13 Score=118.78 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+++|+.++|||||+++|.+....... ....|...........+...+.++||||..+. ...+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 4468999999999999999999987652221 22344444444333223337999999995432 2223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++|++++.+........+..+... . .|+++++||+|......+.+...+.. .........
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 3345678999999999866666665555443321 2 27999999999864311333333322 100000000
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.. ...++.||.++.++++|++.|..
T Consensus 223 ~~----~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GD----TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CC----ceEEEEECCCCCChHHHHHhhhh
Confidence 00 01245688899999999998854
No 176
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.8e-14 Score=103.68 Aligned_cols=161 Identities=25% Similarity=0.291 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..+++|+|.+++|||||+-.+.-... ......|+........ ...+ ..+.+|||.| +|..+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F----~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG------------QERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF----HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG------------QERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc----ccccccccccEEEEEEEEeCCcEEEEEEEEcCC------------ccccc
Confidence 46899999999999999977764443 1112333333322221 1222 3577999999 33333
Q ss_pred HH-hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 96 CL-GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 96 ~~-~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.+ ...+++++++|+|+|+++.-|.... .|++.++...++.. .+.|+.||+|+... +++. +++..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~--R~V~----------~~ea~ 134 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLER--REVE----------FEEAQ 134 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhc--cccc----------HHHHH
Confidence 33 3567899999999999977777664 48888887765321 23348899999875 4443 34444
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.+++..-.++.. .||+++.|+.+++..|.+.+++..
T Consensus 135 ~yAe~~gll~~E---TSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 135 AYAESQGLLFFE---TSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHhcCCEEEE---EecccccCHHHHHHHHHHhccCcc
Confidence 454444333322 377888999999999988888753
No 177
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=1.6e-13 Score=115.04 Aligned_cols=139 Identities=16% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
.++..+|+++|+.++|||||+++|++...... .......|.+....... .++..+.++||||..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH-
Confidence 34458999999999999999999987521100 01113344443332222 345668899999932
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
++...+......+|++++++|+..+....+...+.++... +.+ ++++++||+|.... .+..+.+
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH--HHHHHHH
Confidence 2333333334577999999999877888777777766543 322 37789999999764 4444333
Q ss_pred hccCCchHHHHHHhc
Q 027090 162 GHECPKPLKEILQLC 176 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (228)
.+ .+.+.++.+
T Consensus 151 ~~----~l~~~l~~~ 161 (409)
T CHL00071 151 EL----EVRELLSKY 161 (409)
T ss_pred HH----HHHHHHHHh
Confidence 32 255555443
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.56 E-value=1.5e-13 Score=121.09 Aligned_cols=165 Identities=15% Similarity=0.186 Sum_probs=100.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee---CCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
+...+|+|+|+.++|||||+++|.+....... .+..|.....+..... ....+.++||||.. .+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence 34569999999999999999999876552221 1233333332222211 34679999999932 23
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
...+......+|++++|++++++........+..+... . .|+++++||+|........+...+.. ...+.
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~ 378 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIP 378 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence 33333344577999999999877776666665554331 2 27999999999865311222222221 00001
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
+..... ...+..||.++.++++|++.|....
T Consensus 379 e~~g~~----vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 379 EKWGGD----TPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HhhCCC----ceEEEEECCCCCCHHHHHHhhhhhh
Confidence 111110 1234568888899999999887654
No 179
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.56 E-value=8.5e-13 Score=100.16 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeee------eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVL------KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~------~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+|+++|.+|+|||||++.+++..... ....|..... ..... .....+.++||+|-. +
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~----~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~ 66 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG----RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------S 66 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC----CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch-----------h
Confidence 79999999999999999999876522 2223332211 11111 122358999999932 2
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-----------------ccccccEEEEEeCCCCCcc
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~-----------------~~~~~~~llv~~~~D~~~~ 152 (228)
+.......++.+|++++|+|++++-|.... .|+..+..... ....-|++||.||+|+...
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 233334456788999999999977777665 46666654311 0112389999999998654
No 180
>PRK12735 elongation factor Tu; Reviewed
Probab=99.55 E-value=2.2e-13 Score=113.80 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 82 (228)
++..+|+++|+.++|||||+++|++..... ........|.+....... .++..+.++||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH--
Confidence 445899999999999999999998621100 001123445444333222 345578999999942
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~ 162 (228)
++...+......+|++++++++..+....+.+.+.++... +.+ .+++++||+|.... .+..+.+.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi~---~iivvvNK~Dl~~~--~~~~~~~~ 151 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD--EELLELVE 151 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEecCCcch--HHHHHHHH
Confidence 3334444445578999999999876777766666655432 322 35568999998754 44333332
Q ss_pred ccCCchHHHHHHhcCC---eEEEeeCCCcccccch----------HHHHHHHHHHHHHHH
Q 027090 163 HECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV 209 (228)
Q Consensus 163 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~l~~~i~~~~~ 209 (228)
. .+..+.+.... .+.+ ++.|+.++ .++.+|++.+...++
T Consensus 152 ~----ei~~~l~~~~~~~~~~~i----i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 152 M----EVRELLSKYDFPGDDTPI----IRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred H----HHHHHHHHcCCCcCceeE----EecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1 14444443321 0111 12222222 256889998888765
No 181
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=1.6e-13 Score=101.60 Aligned_cols=160 Identities=13% Similarity=-0.033 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
+..+++++|.+|+|||||++.+++.... ......|.... ..... ..+ ..+.++|++|-....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~---------- 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS---LNAYSPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAI---------- 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC---cccCCCccCcceEEEEEE-ECCeEEEEEEEecCCccccc----------
Confidence 4578999999999999999999987652 02223333221 11111 223 357788999843221
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
......+..+|++++++|++++-+.... .++... +......|++++.||+|+... .... .. ...++.
T Consensus 69 -~~~~~~~~~~d~~llv~d~~~~~s~~~~--~~~~~~-~~~~~~~p~iiv~NK~Dl~~~--~~~~--~~-----~~~~~~ 135 (169)
T cd01892 69 -LLNDAELAACDVACLVYDSSDPKSFSYC--AEVYKK-YFMLGEIPCLFVAAKADLDEQ--QQRY--EV-----QPDEFC 135 (169)
T ss_pred -ccchhhhhcCCEEEEEEeCCCHHHHHHH--HHHHHH-hccCCCCeEEEEEEccccccc--cccc--cc-----CHHHHH
Confidence 1111224578999999999754333322 122222 111112489999999998643 2210 00 122222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
+.... ...+..||.++.+++++++.+.+++.
T Consensus 136 ~~~~~-----~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 136 RKLGL-----PPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHcCC-----CCCEEEEeccCccHHHHHHHHHHHhh
Confidence 22111 11245577788899999998887664
No 182
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.9e-13 Score=101.08 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=108.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHH-H
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI-V 94 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~-~ 94 (228)
...+++++|.+|||||.++-.+..... ......++.++.....+. .++. .+++|||.| ++. .
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f--~~~~~sTiGIDFk~kti~-l~g~~i~lQiWDtaG------------Qerf~ 75 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF--NTSFISTIGIDFKIKTIE-LDGKKIKLQIWDTAG------------QERFR 75 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC--cCCccceEEEEEEEEEEE-eCCeEEEEEEEEccc------------chhHH
Confidence 347999999999999999999987654 222223444444444444 2333 489999999 333 3
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
......+++++.+++|+|+++.-|.+.. .|++.+........ +.+||.||+|.... +.+... .-+.+.
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~e-------~ge~lA 144 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSKE-------RGEALA 144 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccHH-------HHHHHH
Confidence 3444566788999999999977777764 48999998877665 89999999998865 444321 122333
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...+- .| ...||+++.|+.+.+-.+.+.+..
T Consensus 145 ~e~G~---~F---~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 145 REYGI---KF---FETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHhCC---eE---EEccccCCCCHHHHHHHHHHHHHh
Confidence 33221 11 234777889999988776665553
No 183
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=3.1e-13 Score=112.78 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=102.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
.++..+|+++|+.++|||||+++|++..... ........|.+....... .+...+.++||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH-
Confidence 3445899999999999999999998742100 001123455544333222 345678999999932
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
++...+......+|++++|+++..+....+...+.++... +.+ ++++++||+|.... +++.+.+
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch--HHHHHHH
Confidence 3333333334577999999999877777777777776544 322 37789999998754 4444333
Q ss_pred hccCCchHHHHHHhcCCeEEEeeCCCcccccch--------HHHHHHHHHHHHHHHh
Q 027090 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~ 210 (228)
.. .+++++....... -....++.|+.++ .++.+|++.+.+.++.
T Consensus 151 ~~----~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 151 EM----EVRELLSEYDFPG-DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HH----HHHHHHHHhCCCc-CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 21 2444444332100 0001122233332 2578899988887763
No 184
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.55 E-value=6.7e-14 Score=104.16 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
++..+|+++|+.||||||+++.|....... ..+|...+..... .++..+.++|.+|-. .+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence 566899999999999999999998765422 2233333433333 567789999999921 12233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|+++||+|.++.-...+.. +.+..++..+ ...|+++++||.|.... ....+....+.-+.+ .
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~--~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l---~- 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAK--EELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKL---K- 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHH--HHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGT---T-
T ss_pred ceeeccccceeEEEEecccceeecccc--cchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhc---c-
Confidence 444556889999999998432222221 2222333322 12489999999998654 333332222111111 1
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.+..+.++ ..++.++.++.|.+++|.+.
T Consensus 147 -~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 -NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp -SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred -cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 13344443 33566779999999998765
No 185
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.2e-15 Score=110.65 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=113.4
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.+...+.+..++++|+||+||||+++.|.+...|.+| .++.+..... ........-.+.+--|+++..+..+.+
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G----~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl 96 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG----KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL 96 (245)
T ss_pred eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCc----eEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence 4445667889999999999999999999988876555 3333221110 000112222344777777766555443
Q ss_pred HHHHHHHHhhccC----CccEEEEEEeCC-------CCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchhh
Q 027090 90 GKEIVKCLGMAKD----GIHAFLVVFSVT-------NRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEKT 156 (228)
Q Consensus 90 ~~~~~~~~~~~~~----~~~~il~v~~~~-------~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~~ 156 (228)
..+.+....... ++..+.-.+.+. ..+|.++++++.+++++.++|. .+++ |.|.+|.... ..
T Consensus 97 -~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~--i~vlDEP~sGLDi~~~--r~ 171 (245)
T COG4555 97 -KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPS--ILVLDEPTSGLDIRTR--RK 171 (245)
T ss_pred -HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC--eEEEcCCCCCccHHHH--HH
Confidence 333333221110 111111111111 4799999999999999999985 3444 8899999988 88
Q ss_pred HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
+.+++.+.+ +|.++++...|+..++++.|.+...
T Consensus 172 ~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 988888776 7999999999999999999987654
No 186
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=5.6e-13 Score=102.79 Aligned_cols=165 Identities=19% Similarity=0.111 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCC-----------CCcceeeE--eE---------------------eeee
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGS-----------SGVTKTCE--MK---------------------TTVL 65 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~-----------~~~t~~~~--~~---------------------~~~~ 65 (228)
+|+++|+.++|||||++.++...... .+... ...|.... .. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998532211 00000 00110000 00 1111
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~ 145 (228)
..+..+.++||||... ..+.....+. ...+|.+++++++..+.+..+...+.++... + .|+++++|
T Consensus 81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence 3356789999999432 1122222211 1367999999999888888888888877654 2 26899999
Q ss_pred CCCCCccchhhHHHHhhccCCchHHHHHHhcCCe--------------------EEEeeCCCcccccchHHHHHHHHHHH
Q 027090 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
|+|.... ..+...++. +.+.+...... +-..-+.+..|+.++.++++|.+.|.
T Consensus 147 K~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 147 KIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred CccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 9998765 555555544 33333211000 00011233457888899999988775
Q ss_pred H
Q 027090 206 S 206 (228)
Q Consensus 206 ~ 206 (228)
.
T Consensus 220 ~ 220 (224)
T cd04165 220 L 220 (224)
T ss_pred h
Confidence 4
No 187
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.53 E-value=5.9e-13 Score=106.27 Aligned_cols=151 Identities=26% Similarity=0.386 Sum_probs=100.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCcceeeEeEeeeee-CC--cEEEEEeCCCCCCCCCCcH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~ 87 (228)
.-..+|.++|++|+|||||+|.|++....... ......+........... ++ ..+.++||||+++...-..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 44579999999999999999999998442221 111223333333322222 22 3589999999998875443
Q ss_pred HHHHHHHHH--------Hh----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090 88 FVGKEIVKC--------LG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (228)
Q Consensus 88 ~~~~~~~~~--------~~----------~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D 148 (228)
.+ +-+..+ +. ....++|++||++..+ .+++.-+...|+.+... . ++|-|+.|+|
T Consensus 101 ~w-e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD 173 (373)
T COG5019 101 CW-EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKAD 173 (373)
T ss_pred cH-HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--Ceeeeeeccc
Confidence 32 222222 21 1224789999999876 67888888776666544 2 7888999999
Q ss_pred CCccchhhHHHHhhccCCchHHHHHHhcCCeEE
Q 027090 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
.... .++..+.+. +.+.+..++-.++
T Consensus 174 ~lT~--~El~~~K~~-----I~~~i~~~nI~vf 199 (373)
T COG5019 174 TLTD--DELAEFKER-----IREDLEQYNIPVF 199 (373)
T ss_pred cCCH--HHHHHHHHH-----HHHHHHHhCCcee
Confidence 9988 888887777 6666666554444
No 188
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.53 E-value=6e-13 Score=100.95 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=93.0
Q ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--ee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (228)
Q Consensus 25 ~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (228)
+|..|||||||++.++.... ......|........ .. .....+.++||+|-. .+.......+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence 69999999999999986544 112233432222211 11 123468999999932 2223333455
Q ss_pred CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (228)
Q Consensus 102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
..++++++|+|++++.|.... .|+..+..... . .|++||.||+|+... ....+. . .+.+... +
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~~~~~~--~ 129 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDR--KVKAKS--------I-TFHRKKN--L 129 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cCCHHH--------H-HHHHHcC--C
Confidence 678999999999976666554 46666665432 2 289999999998543 211111 1 1112111 1
Q ss_pred EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
. .+..||.++.++.++++.+.+.+.+.
T Consensus 130 ~----~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 130 Q----YYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred E----EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 1 13457788899999999998777654
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=2.7e-13 Score=120.39 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=99.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
-..+|+|+|+.++|||||+++|.+..+.... ....|.....+... +++..+.++||||..+. ...+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhHH
Confidence 3468999999999999999999876652211 22344444444433 45677999999996542 1122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++|++++++........+..+... . .|+++++||+|+.......+...+.. ...+.+...
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 2334567999999999877766666655544332 2 27999999999864311222222221 000011111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.. ...++.||.++.++++|++.|..
T Consensus 425 ~~----vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GD----TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CC----ceEEEEeCCCCCCchHHHHhhhh
Confidence 10 11244688889999999998864
No 190
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.9e-13 Score=107.48 Aligned_cols=157 Identities=21% Similarity=0.277 Sum_probs=100.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCCCCCcceeeEeEeeeee-CC--cEEEEEeCCCCCCCCCCcH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~ 87 (228)
.....++.++|++|.|||||||+|++...... .......|........... ++ ..++++||||+++...-..
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34457899999999999999999998854221 0111111333333222212 22 3589999999998764432
Q ss_pred H-------HHHHHHHHHhh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 88 F-------VGKEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 88 ~-------~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
. +...+..++.. ...++|++||++..+ .++..-+...++.+... . ++|-|+.|+|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccC
Confidence 2 22222233321 123899999999987 44888888766655443 3 688899999999
Q ss_pred ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeC
Q 027090 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (228)
.. .++..+.+. +.+.+....-.++.|..
T Consensus 172 T~--~El~~~K~~-----I~~~i~~~nI~vf~fp~ 199 (366)
T KOG2655|consen 172 TK--DELNQFKKR-----IRQDIEEHNIKVFDFPT 199 (366)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCcceecCCC
Confidence 88 888887777 66666655555444433
No 191
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.52 E-value=4.2e-14 Score=114.17 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
-+++.+++|+|+||||||||+++|+|...+.+| .+......... ........++.+.|+++...+..+.+ ..+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G----~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l-~~~ 104 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG----SISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENL-LVF 104 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHH-HHH
Confidence 356779999999999999999999998775444 22222111100 00112335667777776544433332 111
Q ss_pred HHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 94 VKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 94 ~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
....... ...++.++-.++. ...+|.|+++++.++++++.+|. +++ |++.+|.... .++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~---lllLDEPt~gLD~~~~--~~l~~ 179 (306)
T PRK13537 105 GRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD---VLVLDEPTTGLDPQAR--HLMWE 179 (306)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC---EEEEeCCCcCCCHHHH--HHHHH
Confidence 1110000 0001111111111 14799999999999999999884 555 9999999887 88888
Q ss_pred HhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.++++. +|++.++.+.|++++++.+|.+..
T Consensus 180 ~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 180 RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 877653 899999999999999998887643
No 192
>PLN03127 Elongation factor Tu; Provisional
Probab=99.52 E-value=5.2e-13 Score=112.63 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=100.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc------------c--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF------------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~------------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
.++..+|+++|+.++|||||+++|++.... . ........|.+....... .++..+.++||||..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccc
Confidence 455588999999999999999999743100 0 001123455555444332 3456789999999642
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
+...+......+|++++++++..+....+++.+.++... +.+ .+++++||+|.... .+..+.+
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~~--~~~~~~i 199 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVDD--EELLELV 199 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCCH--HHHHHHH
Confidence 122222222358999999999877777777777776543 322 36778999998754 4444433
Q ss_pred hccCCchHHHHHHhcCC-----eEEEeeCCCcccccc-------hHHHHHHHHHHHHHHHh
Q 027090 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKG-------TEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~l~~~i~~~~~~ 210 (228)
.. .++++...+.. .++..... ++.+ ...+.+|++.+.+.++.
T Consensus 200 ~~----~i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 200 EM----ELRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HH----HHHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCCC
Confidence 31 24444443321 12111111 1111 23478888988887753
No 193
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.52 E-value=3.5e-13 Score=98.67 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+++|++|+|||||++.+........ ...+ ..........++ ..+.++||+|... . .+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~---------~---~~-- 62 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL----ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD---------A---QF-- 62 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC----CCCC-ccceEEEEEECCEEEEEEEEECCCCCc---------h---hH--
Confidence 799999999999999998765543211 1111 111111112333 3488999999532 1 11
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
....|++++|+|.+++-|... ..+++.+...... ...|++++.||.|+.....+.+... ...++.+...
T Consensus 63 --~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~~ 132 (158)
T cd04103 63 --ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADMK 132 (158)
T ss_pred --HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHhC
Confidence 235699999999998888877 4566666654321 1238999999999743210222211 0112222111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
. + ..+..||.++.+++++++.+.+
T Consensus 133 ~-~----~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 133 R-C----SYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred C-C----cEEEEecCCCCCHHHHHHHHHh
Confidence 1 1 1124578888999999987754
No 194
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.52 E-value=1.7e-13 Score=114.73 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe----------------eee---------eCCcEE
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT----------------TVL---------KDGQVV 71 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~----------------~~~---------~~~~~~ 71 (228)
+..+|+++|..++|||||+++|++...... .......|....... ... .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 457899999999999999999987532110 000112222211100 000 013568
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
.++||||.. ++...+......+|++++++|++.+. .....+.+..+.. .+. +++++++||+|..
T Consensus 83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 999999932 22233333334679999999998665 4455555554432 232 3689999999987
Q ss_pred ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. ++.....++ +.++.... ....-..++.|+.++.++++|++.|...++.
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~---~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGT---VAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhc---ccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 64 443322222 22222211 0000123456777889999999999987654
No 195
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=3.9e-13 Score=114.84 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCC
Q 027090 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (228)
Q Consensus 70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~ 149 (228)
.+.++||||+...... .+.+.... ....+|+++|++++....+..+...++.+... ++ ..|+++|+||+|.
T Consensus 231 QIIFVDTPGIhk~~~~--~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl 301 (741)
T PRK09866 231 QLTLLDTPGPNEAGQP--HLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEECCCCCCccch--HHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEcccC
Confidence 3688999999864321 12222222 45577999999999866888888777766543 22 1279999999998
Q ss_pred CccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
..+........... +....... ...+...++.||.++.++++|++.|..
T Consensus 302 ~dreeddkE~Lle~-----V~~~L~q~---~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNSDDADQVRAL-----ISGTLMKG---CITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCcccchHHHHHHH-----HHHHHHhc---CCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 64310112221111 11111111 112445567788899999999987765
No 196
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.9e-13 Score=104.25 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=94.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC---------
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS--------- 83 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~--------- 83 (228)
...-.++..|+|+|++|||||||+|.|.|...+.+| .+....... .........+++.+-+..=.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G----~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~ 96 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALG 96 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheeh
Confidence 344566789999999999999999999999886655 222221111 00111122233332221110
Q ss_pred -----CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 84 -----AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
....+.......++... ..-=+--.....+|+|++|++.+++++...|. +++ ||..+|...+ .
T Consensus 97 l~~~~~~~~e~~~~a~~~L~~V----gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~---lLLlDEPFgALDalTR--~ 167 (248)
T COG1116 97 LELRGKSKAEARERAKELLELV----GLAGFEDKYPHQLSGGMRQRVAIARALATRPK---LLLLDEPFGALDALTR--E 167 (248)
T ss_pred hhccccchHhHHHHHHHHHHHc----CCcchhhcCccccChHHHHHHHHHHHHhcCCC---EEEEcCCcchhhHHHH--H
Confidence 11111111122222211 11111112225799999999999999998884 666 9999998877 6
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEee
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 184 (228)
.+.+.+.+.. +|++++.+..+++++++-+
T Consensus 168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 6555444433 8999999999998888766
No 197
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=4.7e-14 Score=108.73 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=98.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---CCcc-----eeeEeEeee--eeCCcEEEEEeCC------
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT-----KTCEMKTTV--LKDGQVVNVIDTP------ 77 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~---~~~t-----~~~~~~~~~--~~~~~~~~~iDtp------ 77 (228)
..-+++..++|+||||+|||||+++|+|...+..|... ...+ ....+.... .....++++.|.-
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 34456679999999999999999999997775555211 1100 111121110 0112233333332
Q ss_pred --CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 78 --GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 78 --G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
|+.......+ .+.+.++++.. ...=+.-+--..+|+|++|++-++++++.+|. +++ |++.+|....
T Consensus 105 ~~g~~~~~~~~d--~~~v~~aL~~V----gm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~---lllLDEP~~gvD~~~~ 175 (254)
T COG1121 105 KKGWFRRLNKKD--KEKVDEALERV----GMEDLRDRQIGELSGGQKQRVLLARALAQNPD---LLLLDEPFTGVDVAGQ 175 (254)
T ss_pred cccccccccHHH--HHHHHHHHHHc----CchhhhCCcccccCcHHHHHHHHHHHhccCCC---EEEecCCcccCCHHHH
Confidence 2222111111 12333333211 11112222225899999999999999999885 555 9999999877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
..+.+.+++++ +|++..+.+.|+.++++....
T Consensus 176 --~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 176 --KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred --HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 77777777665 799999999999988875443
No 198
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.51 E-value=5e-13 Score=96.92 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|.+|+|||||+++|++...+... ....+......... .++ ..+.++|+||..+.. . ..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~--------~---~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEY--KPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYR--------A---IR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcC--CCCceeeeeEEEEE-ECCEEEEEEEEECCCcccch--------H---HH
Confidence 58999999999999999999988742221 11222222222122 344 568899999943321 1 11
Q ss_pred hhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~---~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+.++.+++.... +......+...+...... ..|+++++||+|.... . ...... ....
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~~~--------~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTHVA--------FLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHHHH--------HHHh
Confidence 1111233555555555422 122222333334333321 2389999999999764 3 111111 1111
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 205 (228)
.... ...++.++..+.++.++++.|.
T Consensus 135 ~~~~-----~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNG-----EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccC-----CceEEeecCCCCCHHHHHHHhh
Confidence 1111 1234556677788999888764
No 199
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.51 E-value=8e-14 Score=113.87 Aligned_cols=164 Identities=20% Similarity=0.173 Sum_probs=104.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.++...+..+.. ..+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G----~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l-~~~ 138 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAG----KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENL-LVF 138 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce----EEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHH-HHH
Confidence 356789999999999999999999998775544 22222211100 00122334566777765544333322 111
Q ss_pred HHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 94 VKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 94 ~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
....... ...++.++-.+++ ...+|.|+++++.++.+++.+|. +++ |++.+|.... .++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~---lLiLDEPt~gLD~~~r--~~l~~ 213 (340)
T PRK13536 139 GRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ---LLILDEPTTGLDPHAR--HLIWE 213 (340)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCCCCCHHHH--HHHHH
Confidence 1110000 0001111111111 14799999999999999999884 555 9999999888 88888
Q ss_pred HhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.++. +|.+.++.+.|++++++.+|.+..
T Consensus 214 ~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 214 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 887653 799999999999999998887653
No 200
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.51 E-value=5e-14 Score=113.68 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=101.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
.-.++.+++|+|+||||||||+++|+|...+.+| .+.......... ........+.+.+.++...+..+.+ ..
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l-~~ 89 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL-EM 89 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH-HH
Confidence 3356789999999999999999999998765444 222221111000 0111223456666665543332222 11
Q ss_pred HHHHH-----------hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 93 IVKCL-----------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 93 ~~~~~-----------~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
..... .......+.--..-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l~ 164 (302)
T TIGR01188 90 MGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD---VLFLDEPTTGLDPRTR--RAIW 164 (302)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHH
Confidence 00000 000000110000011114799999999999999999884 555 9999999877 7887
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+++.. +|.+.++.+.|++.+++.+|.+.
T Consensus 165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7776543 89999999999999999888764
No 201
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.51 E-value=3.9e-13 Score=112.61 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=98.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEe----------------ee-eeC--------Cc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKT----------------TV-LKD--------GQ 69 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~----------------~~-~~~--------~~ 69 (228)
.++..+|+++|+.++|||||+.+|++..... ........|....... .. ..+ ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4455899999999999999999998742100 0111123333322100 00 000 24
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (228)
Q Consensus 70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D 148 (228)
.+.++||||. .++...+......+|++++++|+..+. .......+..+.. .+. +++++++||+|
T Consensus 86 ~i~liDtPG~-----------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGH-----------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeec
Confidence 6899999992 222222323334679999999998655 4555555544432 222 36889999999
Q ss_pred CCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+... .+.....+. +..+.+.. .......++.||.++.++++|++.|...+++
T Consensus 151 l~~~--~~~~~~~~~-----i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 151 LVSK--ERALENYEQ-----IKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred cccc--hhHHHHHHH-----HHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 8765 443322222 22222211 0001122456778889999999999887654
No 202
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=2.3e-12 Score=99.08 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=89.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHH-HhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNS-ILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~-l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.....+|+++|++|||||||++. +.|... ..+..|......... ......+.++||+|-..
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------- 70 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFE-----KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------- 70 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCC-----CCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence 33447999999999999999965 554421 111222222221111 11234688999999322
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+...........++++++++++++.|.... .++..+.....+ .|++++.||+|.... ....+.+
T Consensus 71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~i~lv~nK~Dl~~~--~~~~~~~--------- 135 (215)
T PTZ00132 71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN---IPIVLVGNKVDVKDR--QVKARQI--------- 135 (215)
T ss_pred -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccCccc--cCCHHHH---------
Confidence 111122233466999999999866666554 345555443322 378889999997543 2111111
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+.+.....+ ...|+.++.++++.+..|.+.+..+
T Consensus 136 ~~~~~~~~~~------~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 136 TFHRKKNLQY------YDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHHHcCCEE------EEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 1122211111 2345566677888887776666553
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.51 E-value=2.1e-13 Score=115.15 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC---------------CCCCcceeeEeEeeeee
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------GSSGVTKTCEMKTTVLK 66 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~ 66 (228)
.++..+|+++|+.++|||||+++|+...-.. .+. .....|.+....... .
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-T 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-c
Confidence 4556899999999999999999998432100 010 023445554443333 4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~s~~~~~~l~~~~~~~~~~~~~~~llv~ 144 (228)
++..+.++||||..+. ...+......+|++++|+|+.+ .........+.++.. .+.+ ++++++
T Consensus 82 ~~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEE
Confidence 5678999999995321 1112222357899999999986 565656665555543 2322 688999
Q ss_pred eCCCCCc
Q 027090 145 TGGDDLE 151 (228)
Q Consensus 145 ~~~D~~~ 151 (228)
||+|...
T Consensus 147 NK~Dl~~ 153 (425)
T PRK12317 147 NKMDAVN 153 (425)
T ss_pred Ecccccc
Confidence 9999864
No 204
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.50 E-value=1.7e-12 Score=108.43 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc------c------c--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA------F------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
.++..+|+++|+.++|||||+++|++... . . ........|.+....... .++..+.++||||..
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~- 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA- 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchH-
Confidence 45558999999999999999999984311 0 0 001113455554333322 345568999999943
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
++...+......+|++++++++..+....+.+.+.++... +.+ ++++++||+|....
T Consensus 87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence 2222222333477999999999877777777777766543 322 46678999998754
No 205
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.1e-13 Score=111.15 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=90.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.....+..|+|+|++++|||||+|+|+.... +.+++.+.|+..........++.++++.||+|+.+.....-+. --+
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~-~gI 339 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEA-LGI 339 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHH-HhH
Confidence 3445678999999999999999999998876 5666777788777666666889999999999998832221110 111
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcc----ccccEEEEEeCCCCCcc
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKN----VFDYMIVVFTGGDDLED 152 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~---~~~~----~~~~~llv~~~~D~~~~ 152 (228)
.++. .....+|++++++++....+..+....+.+... +... .+++++++.||.|....
T Consensus 340 ~rA~-k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 340 ERAR-KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHH-HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 1221 234577999999999644444444433333322 1111 12578889999998754
No 206
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=3.7e-14 Score=102.69 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=103.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeee--eeCCc----EEEEEeCCCCCCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTV--LKDGQ----VVNVIDTPGLFDLSAG 85 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~--~~~~~----~~~~iDtpG~~~~~~~ 85 (228)
.-+.+.+++|+|++|+|||||+|.|.|-..|.+|. ...+.|....+.... ..+.. .+.+...-|++-.+..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 34556899999999999999999999988766652 111222111111000 00011 1233333444433321
Q ss_pred -cHHHHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090 86 -SEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 86 -~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~ 160 (228)
.....++... ..... +... +.-+....+|+++++++.+++.+.+.. |+++ ||..+|..-+ .++...
T Consensus 101 kL~a~~r~~v~~aa~~v--Gl~~--~~~RLP~~LSGGqRQRvALARclvR~~---PilLLDEPFsALdP~LR--~eMl~L 171 (231)
T COG3840 101 KLNAEQREKVEAAAAQV--GLAG--FLKRLPGELSGGQRQRVALARCLVREQ---PILLLDEPFSALDPALR--AEMLAL 171 (231)
T ss_pred ccCHHHHHHHHHHHHHh--Chhh--HhhhCccccCchHHHHHHHHHHHhccC---CeEEecCchhhcCHHHH--HHHHHH
Confidence 1111122111 11111 1111 223334679999999999999998776 7777 9999998877 777777
Q ss_pred hhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 161 LGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 161 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
+.+.+ +|..+++.+..+..+++.+|++...
T Consensus 172 v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence 77665 8999999999999999999987654
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.50 E-value=3.5e-13 Score=117.41 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=90.2
Q ss_pred cCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCc
Q 027090 26 GRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGI 104 (228)
Q Consensus 26 G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (228)
|.+|+|||||+|+|+|... .. .+.+ .|.+..... ...++..+.++||||..+....... +.+.+.. ...+.+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v--~n~pG~Tv~~~~~~-i~~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TV--GNWPGVTVEKKEGK-LGFQGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-ee--cCCCCeEEEEEEEE-EEECCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCC
Confidence 8999999999999999864 22 2223 333332222 2245667899999998775432211 1222211 112467
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEee
Q 027090 105 HAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 105 ~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
|++++++|++ .+.. .+.+........ .|+++++||+|..+. ..+... .+++.+..+-
T Consensus 74 DvvI~VvDat-~ler----~l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~------ 130 (591)
T TIGR00437 74 DLVVNVVDAS-NLER----NLYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGV------ 130 (591)
T ss_pred CEEEEEecCC-cchh----hHHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCC------
Confidence 9999999997 3322 222222222222 389999999998654 332211 2223333221
Q ss_pred CCCcccccchHHHHHHHHHHHHHH
Q 027090 185 NKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
..++.||.++.+++++++.+.+..
T Consensus 131 pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 131 PVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 234567778899999999887653
No 208
>PRK00049 elongation factor Tu; Reviewed
Probab=99.50 E-value=1.1e-12 Score=109.50 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 82 (228)
++..+|+++|+.++|||||+++|++..... ........|.+....... .++..+.++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence 445899999999999999999998732100 000123445444333222 345678999999942
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEE-EEEeCCCCCccchhhHHHHh
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~l-lv~~~~D~~~~~~~~~~~~~ 161 (228)
++...+......+|++++++|+..+....++..+.++... +. |.+ +++||+|.... .+..+.+
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~ 150 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELV 150 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHH
Confidence 3333344445688999999999877777777777766543 32 454 68999998754 4433323
Q ss_pred hccCCchHHHHHHhcCC-----eEEEeeCCCcc--cccch--HHHHHHHHHHHHHHH
Q 027090 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKD--EAKGT--EQVRQLLSLVNSVIV 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~--~~~~~l~~~i~~~~~ 209 (228)
.. .+.++...+.. .++...+.... +.... .++.+|++.|...++
T Consensus 151 ~~----~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 151 EM----EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 21 14444443321 22222222110 00011 256788888888764
No 209
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=108.50 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
....+..-+++++|.+.+|||||+|.|++.. +.+..++.|+.........+++-.++++|+||+...........++
T Consensus 57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~ 133 (365)
T COG1163 57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQ 133 (365)
T ss_pred eEeccCCeEEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcce
Confidence 3344555799999999999999999999976 4566778887777767677889999999999998766544322222
Q ss_pred HHHHHhhccCCccEEEEEEeCC
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVT 114 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~ 114 (228)
+. ...+.+|++++|+|+.
T Consensus 134 vl----sv~R~ADlIiiVld~~ 151 (365)
T COG1163 134 VL----SVARNADLIIIVLDVF 151 (365)
T ss_pred ee----eeeccCCEEEEEEecC
Confidence 22 2334567777777765
No 210
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.50 E-value=9.2e-13 Score=104.31 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh---CCCcccc-------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090 21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 84 (228)
+|+++|+.|+|||||+++|+ |...... .......|......... +++..+.++||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence 58999999999999999996 3211100 01122334433333332 56778999999996541
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..+... ....+|++++|+++..+....+...++.+... + +|+++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEVER----SLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHHHH----HHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 123333 33456999999999877777777666655432 2 278899999998643
No 211
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.50 E-value=2e-13 Score=98.42 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=106.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..-.+|.++|.+|+|||||+|.+...+.. ......+..+........ .....++++||.| ++.+.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~--~qykaTIgadFltKev~Vd~~~vtlQiWDTAG------------QERFq 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--QQYKATIGADFLTKEVQVDDRSVTLQIWDTAG------------QERFQ 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHH--HHhccccchhheeeEEEEcCeEEEEEEEeccc------------HHHhh
Confidence 44579999999999999999999887652 212222222222222111 1223489999999 56555
Q ss_pred HHh-hccCCccEEEEEEeCCCCCCHHHHH-HH-HHH-HHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 96 CLG-MAKDGIHAFLVVFSVTNRFSQEEET-AV-HRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 96 ~~~-~~~~~~~~il~v~~~~~~~s~~~~~-~l-~~~-~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.+. ..++++|+.+++.++...-|++... |- +.+ ++...+|...|.+|+.||+|......+.+. .+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS----------~~~ 142 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS----------EKK 142 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee----------HHH
Confidence 554 5679999999999998666666543 22 222 222345566799999999998653111111 233
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
..+.|...- .-+....||+...|+.+.++.+.+....++.
T Consensus 143 Aq~WC~s~g--nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 143 AQTWCKSKG--NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHhcC--CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 344444321 0112335777789999999888777766553
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.49 E-value=1.2e-12 Score=113.91 Aligned_cols=115 Identities=17% Similarity=0.278 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc-c-ccc------------CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKA-F-KAS------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~-~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
++|+|+|+.++|||||+++|+...- + ..+ ......|........ .+++..+.++||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-~~~~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-RYNGTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-EECCEEEEEEECCCHHH----
Confidence 5899999999999999999974311 1 000 011234544443333 36778899999999543
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
+...+......+|++++++++..+.....+.++..+... .. |.++++||+|...
T Consensus 77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~i--p~IVviNKiD~~~ 130 (594)
T TIGR01394 77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---GL--KPIVVINKIDRPS 130 (594)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---CC--CEEEEEECCCCCC
Confidence 222233333466999999999877766777777666542 22 6889999999854
No 213
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.49 E-value=1.5e-13 Score=110.93 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=103.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+.......... .......++.+.|.++...+..+.+ ....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G----~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l-~~~~ 100 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG----SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYL-QFIA 100 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHH-HHHH
Confidence 56789999999999999999999998765444 222222111000 0112235566667665543333322 1111
Q ss_pred HHHhhc----cCCccEEEE-------EEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090 95 KCLGMA----KDGIHAFLV-------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 95 ~~~~~~----~~~~~~il~-------v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~ 160 (228)
...... ...++.++- .-.....+|.|+++++.++++++++|. +++ |++.+|.... .++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~---lliLDEPt~gLD~~~~--~~l~~~ 175 (301)
T TIGR03522 101 GIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK---VLILDEPTTGLDPNQL--VEIRNV 175 (301)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHH
Confidence 100000 000111111 111125799999999999999999884 555 9999999887 888887
Q ss_pred hhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 161 LGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 161 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
++... +|.+.++.+.|++.+++.++.+..
T Consensus 176 l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~ 212 (301)
T TIGR03522 176 IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212 (301)
T ss_pred HHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 77763 899999999999999998887653
No 214
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=112.04 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=101.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
..++..++..+++|+|-+++|||||+|.++...+ .+.++..|+..-..+...+....++++||||+.+....+.+.+
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 3566677889999999999999999999987765 4566777877766666667777899999999999876655543
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCC--CCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~--~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~ 159 (228)
+... +....+--.+++|+.|+++ +.|-.++ +..+.+..+|.+. |+|+|+||+|.... +.+..
T Consensus 237 Emqs--ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~ 301 (620)
T KOG1490|consen 237 EMQI--ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ 301 (620)
T ss_pred HHHH--HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence 3322 1222233467899999984 3444443 4666777777665 79999999999877 55543
No 215
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.1e-13 Score=105.30 Aligned_cols=162 Identities=17% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-- 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-- 93 (228)
-+++.+++|+|+||+|||||+++|+|...+.+| .+........ ........+.+.|.+....+..+...-..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLEL 100 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHH
Confidence 346679999999999999999999998764443 2222211110 01122334556665544332222211000
Q ss_pred --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
...........+.--+.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~---lllLDEPt~~LD~~~~--~~~~~~l~ 175 (220)
T cd03293 101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD---VLLLDEPFSALDALTR--EQLQEELL 175 (220)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEECCCCCCCCHHHH--HHHHHHHH
Confidence 0000000011111001111125799999999999999998884 555 9999999877 77777665
Q ss_pred cc----C------CchHHHHHHhcCCeEEEe--eCCCc
Q 027090 163 HE----C------PKPLKEILQLCDNRCVLF--DNKTK 188 (228)
Q Consensus 163 ~~----~------~~~~~~~~~~~~~~~~~~--~~~~~ 188 (228)
+. . +|....+...|+..+++. ++.+.
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 43 1 688888888899888887 46543
No 216
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=9.4e-13 Score=99.60 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHH-HHhCCCccccc-CCCCCccee--eEeE-e---------eeeeCCcEEEEEeCCCCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS-AGSSGVTKT--CEMK-T---------TVLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin-~l~g~~~~~~~-~~~~~~t~~--~~~~-~---------~~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
.+|+++|..|+|||||+. .+.+....... .....+|+. ..+. . ........+.++||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 589999999999999996 55443221000 112233331 0110 0 0111234589999999432
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH-----
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE----- 158 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~----- 158 (228)
......++.+|++++|++.+++.|.... .|+..+...... .|+++|.||+|+.........
T Consensus 79 ---------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~---~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 79 ---------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR---VPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred ---------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhccccccchhhhcccc
Confidence 1112356789999999999978787765 366666554322 289999999998532000000
Q ss_pred --HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 159 --DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
......+.-...+..+.+...-+. .+..||.++.+++++++.+.++
T Consensus 147 ~~~~~~~~~~V~~~e~~~~a~~~~~~---~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKELGIP---YYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccCCccCHHHHHHHHHHhCCE---EEEcCCCCCCCHHHHHHHHHHh
Confidence 000000000112222222221111 2345888889999999877653
No 217
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2e-14 Score=110.64 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-----e--eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----T--VLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-----~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
...+++|++|+|||||||+|.|...+..|. +........ . ...+.+.-++++..-++.+.+...++.--
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~----I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGR----IELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccE----EEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 589999999999999999999998866552 222111111 0 11112234566665555444332221000
Q ss_pred HHHHHhhccCCccEEE-------EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 93 IVKCLGMAKDGIHAFL-------VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il-------~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
.... ....+|.++ +.-.....+|+|++|++.+.++++..|. +++ |+.-+|.... +++.-|++
T Consensus 101 ~~~~---~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~---LLLmDEPLaSLD~~RK--~EilpylE 172 (352)
T COG4148 101 MWKS---MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE---LLLMDEPLASLDLPRK--REILPYLE 172 (352)
T ss_pred hccc---chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC---eeeecCchhhcccchh--hHHHHHHH
Confidence 0000 001112111 1222336799999999999999998884 665 9999999888 89998888
Q ss_pred ccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 163 HEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
++. +|+++++.+.+++.+++-+|++..+
T Consensus 173 RL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 173 RLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred HHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 876 8999999999999999999998765
No 218
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.48 E-value=1.6e-13 Score=105.64 Aligned_cols=158 Identities=14% Similarity=0.116 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.|.+....+..++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG----KIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHH
Confidence 356779999999999999999999998764443 22222111100 0 0011223455555554432222221
Q ss_pred H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
. +.+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 102 AFPLRIIGVPPRDANERVSAALEKV--GLEG--KAHALPMQLSGGEQQRVAIARAIVHKPP---LLLADEPTGNLDPELS 174 (216)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCcCCHHHH
Confidence 1 0111111111 1110 1111125799999999999999998884 666 9999998877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
..+.+.+.+.. +|+...+...|+..+++.++.
T Consensus 175 --~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 175 --RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred --HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77777776542 688888777888777776654
No 219
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.48 E-value=2.1e-13 Score=111.98 Aligned_cols=165 Identities=14% Similarity=0.038 Sum_probs=105.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee---e----CCcEEEEEeCCCCCCCCCCcH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---K----DGQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~----~~~~~~~iDtpG~~~~~~~~~ 87 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+........... . .....++++.++++...+..+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G----~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~e 90 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG----QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQ 90 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce----EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHH
Confidence 3456789999999999999999999999875544 3332222111000 0 223456778888876554443
Q ss_pred HHHHH----------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 88 FVGKE----------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 88 ~~~~~----------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
++.-. ...........++.--+.-.....+|+|+++++.+++++..+| +++| |++.+|....
T Consensus 91 Ni~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlDEP~saLD~~~r-- 165 (363)
T TIGR01186 91 NTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP---DILLMDEAFSALDPLIR-- 165 (363)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHHH--
Confidence 32110 0000000011111111122222579999999999999999888 4666 9999999877
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.++.+.+..+. +|++.++.+.|+.++++.++.+.
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 77776655331 79999999999999999888764
No 220
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.3e-13 Score=106.09 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=98.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-.++.+++|+|+||||||||+++|+|...+.+| .++........ .........+.+.|.+....+..+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 97 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFEN 97 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHH
Confidence 3456789999999999999999999998765444 22222111100 0001112344555554432222211
Q ss_pred HH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 VG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
.. ......+... +... +.-.....+|+|+++++.++++++.+| ++++ |++.+|..
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~ 170 (235)
T cd03261 98 VAFPLREHTRLSEEEIREIVLEKLEAV--GLRG--AEDLYPAELSGGMKKRVALARALALDP---ELLLYDEPTAGLDPI 170 (235)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHc--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHH
Confidence 10 0011111111 1111 111112479999999999999999888 4666 99999998
Q ss_pred ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+++. . +|++..+...|+..+++.++.+.
T Consensus 171 ~~--~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 171 AS--GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred HH--HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 77 7777766653 1 78999998999999888888764
No 221
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.47 E-value=1.4e-12 Score=113.01 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--e---------------eCCcEEEEEeCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--L---------------KDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~---------------~~~~~~~~iDtpG~~~~ 82 (228)
..|+++|+.++|||||+|+|.+........ +..|......... . .....+.++||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccC--CceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 379999999999999999999886522111 1222211111110 0 0012388999999422
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
+...+......+|++++|++++.+.+..+...+.++... . .|+++++||+|...
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP 135 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence 222233344578999999999877777766666655432 2 37999999999863
No 222
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.47 E-value=2.7e-13 Score=94.35 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc-cc-CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK-AS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+|+|+|+.||||||||+.|++..... .. ......+....... .......+.++|++|..... ......
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~-------~~~~~~-- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIV-VDGDRQSLQFWDFGGQEEFY-------SQHQFF-- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEE-ETTEEEEEEEEEESSSHCHH-------CTSHHH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEE-ecCCceEEEEEecCccceec-------ccccch--
Confidence 68999999999999999999887531 11 11111222211111 11223347899999942211 111111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD 148 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D 148 (228)
....|++++++|+++.-|.... +++.++...-.....-|++++.||.|
T Consensus 71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 2356999999999855555543 23333443322112238999999998
No 223
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=7.6e-15 Score=111.08 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
+..-.++.+++++||||+|||||+|.|+|...|.+| .+......... ....-...+-++.+-++...+..++
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G----~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN 99 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG----TVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN 99 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCc----eEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence 334456789999999999999999999999886655 22222111110 0011122344455554444443333
Q ss_pred HHHHHH------HHH---------hhccCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090 89 VGKEIV------KCL---------GMAKDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---V 143 (228)
Q Consensus 89 ~~~~~~------~~~---------~~~~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v 143 (228)
..--.. ..+ .....++..++..+.. ...+|.+++++++++++++.+|. +++ |
T Consensus 100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~---lLLLDEP 176 (250)
T COG0411 100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK---LLLLDEP 176 (250)
T ss_pred HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC---EEEecCc
Confidence 211000 000 0000011111222222 25799999999999999998884 555 7
Q ss_pred EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
...+..... .++.+.+.+.+ .|+++-+...|++++++..|.+..
T Consensus 177 aAGln~~e~--~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 177 AAGLNPEET--EELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred cCCCCHHHH--HHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 787777665 66666666554 689999999999999999888654
No 224
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.47 E-value=1.9e-12 Score=94.88 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+|+++|+.|+|||||++.+.+..... ....|. +....... .++ ..+.++|++|... +...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE----NYIPTIGIDSYSKEVS-IDGKPVNLEIWDTSGQER-----------FDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS----SSETTSSEEEEEEEEE-ETTEEEEEEEEEETTSGG-----------GHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc----cccccccccccccccc-cccccccccccccccccc-----------cccc
Confidence 68999999999999999999876522 222232 22222222 223 3489999999321 1112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
........|+++++++.+++-|.... .|+..+........ |++++.||.|.... +.+.. ...+++.+.
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~--~~v~~-------~~~~~~~~~ 133 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDE--REVSV-------EEAQEFAKE 133 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGG--SSSCH-------HHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccc--cceeeecccccccc--ccchh-------hHHHHHHHH
Confidence 22334577999999999866555554 46676666655222 89999999998753 22221 012334444
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
....++ ..++.++.++.+++..+.+.+
T Consensus 134 ~~~~~~------e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 134 LGVPYF------EVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTSEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred hCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 332222 234556688999887766544
No 225
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.47 E-value=2.4e-13 Score=109.77 Aligned_cols=164 Identities=17% Similarity=0.070 Sum_probs=100.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
.-+++.+++|+|+||||||||+++|+|...+.+| .+......... ........++.+.|.+....+..+.+. .
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-~ 100 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRG----KITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL-V 100 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH-H
Confidence 3456789999999999999999999998764444 22221111100 001122335556666554333222221 0
Q ss_pred HHHHH-----------hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 93 IVKCL-----------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 93 ~~~~~-----------~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
..... .........--..-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l~ 175 (303)
T TIGR01288 101 FGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ---LLILDEPTTGLDPHAR--HLIW 175 (303)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHH
Confidence 00000 000000000000011114799999999999999998884 555 9999999877 8888
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.. +|++.++.+.|++.+++.+|.+.
T Consensus 176 ~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7776642 79999999999999999888754
No 226
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.47 E-value=1.1e-12 Score=102.06 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc--cc-CC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFK--AS-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~--~~-~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 84 (228)
+|+++|+.|+|||||+++|+...-.. .+ +. ....+....... ..+++..+.++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~-~~~~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVAS-FQWEDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEE-EEECCEEEEEEeCCCccch--
Confidence 58999999999999999997542100 00 00 111122222222 2356778999999997642
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..+...++ ..+|++++|+++..+.+.....+++.+... . .|+++++||+|....
T Consensus 78 -----~~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCC
Confidence 12333333 356999999999877777666666665432 2 278999999998754
No 227
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.46 E-value=2.4e-12 Score=101.85 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcc--cccCC------------------CCCcceeeEeEeeeeeCCcEEEEEeCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAF--KASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG 78 (228)
.++|+|+|+.|+|||||+++|+...-. ..+.. ....+....... ..+++..+.++||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~-~~~~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ-FEYRDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEE-EeeCCEEEEEEECCC
Confidence 378999999999999999999743110 01100 011121122222 235677899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..+. ..+....+ ..+|++++|+++..+.......+++.+... . .|+++++||+|....
T Consensus 81 ~~df-------~~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~~---~--~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDF-------SEDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRLR---G--IPIITFINKLDREGR 138 (267)
T ss_pred chHH-------HHHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHhc---C--CCEEEEEECCccCCC
Confidence 5432 12222222 456999999999877666555555444321 2 379999999997654
No 228
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=7.3e-13 Score=98.42 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.++..++|+|+||+|||||++.|+|...+..| .+......... .........+.+.|.+....... +.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~----~~~~ 95 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR----ENLK 95 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcccchHhhhccEEEEecCCccccCCcHH----HHhh
Confidence 45679999999999999999999998764333 22221111100 00112233455555544322111 1110
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------ 165 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------ 165 (228)
+|.++++++.+++++..+| ++++ |++.+|.... ..+.+.+++..
T Consensus 96 ----------------------LS~G~~qrv~laral~~~p---~illlDEPt~~LD~~~~--~~l~~~l~~~~~~g~ti 148 (173)
T cd03230 96 ----------------------LSGGMKQRLALAQALLHDP---ELLILDEPTSGLDPESR--REFWELLRELKKEGKTI 148 (173)
T ss_pred ----------------------cCHHHHHHHHHHHHHHcCC---CEEEEeCCccCCCHHHH--HHHHHHHHHHHHCCCEE
Confidence 8999999999999999888 4666 9999998877 77777766542
Q ss_pred ---CchHHHHHHhcCCeEEEeeCC
Q 027090 166 ---PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~~~~~ 186 (228)
+|+...+...|+..+++.++.
T Consensus 149 ii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 149 LLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred EEECCCHHHHHHhCCEEEEEeCCC
Confidence 677777777777777776553
No 229
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.46 E-value=3.1e-13 Score=103.81 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------CCCCCcceeeEeEeeee----eCCcEEEEEeCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG 78 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG 78 (228)
++|+|+|+.|+|||||+++|+........ ......+.......... .....+.++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 47999999999999999999865321110 00011222111111111 1235689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
..+.. ...... ...+|++++++|+....+....++++.+... . .|+++++||+|..
T Consensus 81 ~~~f~-------~~~~~~----~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-------DEVAAA----LRLSDGVVLVVDVVEGVTSNTERLIRHAILE---G--LPIVLVINKIDRL 136 (213)
T ss_pred CcchH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence 65421 222222 3366999999999877777665555544321 2 3799999999975
No 230
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.1e-13 Score=110.85 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKE-- 92 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~-- 92 (228)
-.++..++|+|+||||||||+++|.|...+.+| .+......... .........+.+.+.++...+..+++.-.
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG----QIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 346679999999999999999999999875555 22222211110 01112234566777766554433332110
Q ss_pred --------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 93 --------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 93 --------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
.........+....--+.-.....+|+|+++++.++++++.+|. +++ |++.+|.... .++...+
T Consensus 105 ~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~---lLLLDEP~s~LD~~~r--~~l~~~l 179 (351)
T PRK11432 105 MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK---VLLFDEPLSNLDANLR--RSMREKI 179 (351)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH--HHHHHHH
Confidence 00000000011111111122225799999999999999998884 666 9999998877 7777666
Q ss_pred hccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 162 GHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 162 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+... +|+..++...|++++++.+|.+..
T Consensus 180 ~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 5432 799999999999999999887654
No 231
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.45 E-value=2.8e-14 Score=109.44 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=106.8
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---CcceeeEeEe--e-eeeCCcEEEEEeCCCCCCCCCC
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTKTCEMKT--T-VLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~--~-~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
.+..-+++.+++++|+||+||||+++.|+|...+.+|.... .+......+. . ....+..-..||.|-..+. ..
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~-~v 121 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL-EV 121 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH-HH
Confidence 34455778899999999999999999999999877662211 1111000000 0 0011223456788832211 10
Q ss_pred cHHHHHHHHHHHh-hccCCccEEEEEEeCC-------CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 86 SEFVGKEIVKCLG-MAKDGIHAFLVVFSVT-------NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~il~v~~~~-------~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
. +.+...-. ...++.+-+..+++.. ..+|.|++.+.+++.+++++|. +++ |.-.+|....
T Consensus 122 ~----~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~---VLfLDEpTvgLDV~aq-- 192 (325)
T COG4586 122 L----KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK---VLFLDEPTVGLDVNAQ-- 192 (325)
T ss_pred H----HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc---EEEecCCccCcchhHH--
Confidence 0 00000000 0001112122222222 4799999999999999999884 655 8888998877
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+.++++++. +|++.++.+.|++++++..|....+
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 88999888765 8999999999999999999987654
No 232
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.45 E-value=6.6e-14 Score=106.89 Aligned_cols=158 Identities=11% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCC-CCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL-FDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~-~~~~~~~~~~~---- 90 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .++.................+.+.|.+ ....+..++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 98 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence 356779999999999999999999998765444 222211110000011112234444321 11111111110
Q ss_pred ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
..+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.+.+
T Consensus 99 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l 169 (205)
T cd03226 99 ELDAGNEQAETVLKDL--DLYA--LKERHPLSLSGGQKQRLAIAAALLSGKD---LLIFDEPTSGLDYKNM--ERVGELI 169 (205)
T ss_pred hcCccHHHHHHHHHHc--CCch--hcCCCchhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCccCCHHHH--HHHHHHH
Confidence 0111111111 1111 1111224799999999999999988883 555 9999998877 7777777
Q ss_pred hccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090 162 GHEC---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 162 ~~~~---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
.+.. +|+..++...|+..+++.++.
T Consensus 170 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6541 688888888888877776654
No 233
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3e-13 Score=103.91 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=95.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~--- 90 (228)
.-.++.+++|+|+||+|||||+++|+|...+.+| .++........ .........+.+.|.+....+..+...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 97 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG----EILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL 97 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHH
Confidence 3456789999999999999999999998765444 22222111000 001112234445554443222211110
Q ss_pred -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
+.+...+... +... +.-.....+|+|+++++.++++++.+| ++++ |++.+|.... ..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p---~~lllDEPt~~LD~~~~--~~ 168 (213)
T cd03259 98 KLRGVPKAEIRARVRELLELV--GLEG--LLNRYPHELSGGQQQRVALARALAREP---SLLLLDEPLSALDAKLR--EE 168 (213)
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CChh--hhhcChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH--HH
Confidence 0011111111 1110 111111479999999999999999888 4666 9999998877 77
Q ss_pred HHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090 157 LEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 157 ~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+.+.+.+. . +|+...+...|+..+++.++.+
T Consensus 169 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred HHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 77776653 1 6888888888888888877654
No 234
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.45 E-value=8.4e-12 Score=96.11 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-C--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+|+++|+.|||||||++.+.+..... ....|........... . ...+.++||+| +.++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g-----------q~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE----GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG-----------QEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc----cCCCceeeeeEEEEEEeCCCEEEEEeecCCC-----------HHHHHHH
Confidence 799999999999999999999887622 2233322222221111 1 34588999999 2344455
Q ss_pred HhhccCCccEEEEEEeCCCCCC-HH-HHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFS-QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s-~~-~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+.....++++++++++....-+ .. ...+.+.+........ |++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence 5566678899999999874222 22 2345556655543222 79999999999865
No 235
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.45 E-value=1.6e-12 Score=109.69 Aligned_cols=172 Identities=11% Similarity=0.112 Sum_probs=105.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe-----------------ee------------
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT-----------------TV------------ 64 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~-----------------~~------------ 64 (228)
...+..+|+++|+-..|||||+.+|+|.....- .......|.+..... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345568999999999999999999998653111 011112222111100 00
Q ss_pred ---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccccE
Q 027090 65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYM 140 (228)
Q Consensus 65 ---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s~~~~~~l~~~~~~~~~~~~~~~ 140 (228)
......+.++|+||. +.+.+.+......+|.+++|+++.++ .....++.+.++. .++-+ ++
T Consensus 110 ~~~~~~~~~i~~IDtPGH-----------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGH-----------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HI 174 (460)
T ss_pred cccccccceEeeeeCCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cE
Confidence 000235899999992 23344443444577999999999854 3444555554443 33433 78
Q ss_pred EEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 141 llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
++++||+|.... .++.+..+. +.++..... ......++.||.++.++++|++.|.+.++..
T Consensus 175 IVvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~---~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 175 IILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTI---ADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred EEEEecccccCH--HHHHHHHHH-----HHHHHHhhc---cCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 999999998765 555554444 444433211 1122345678888899999999999777653
No 236
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.45 E-value=4.1e-13 Score=103.18 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.|.++......+..
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG----QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV 100 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHH
Confidence 356789999999999999999999998764443 22222111100 0 0011223445555554332222221
Q ss_pred H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
. ..+...+... +... +.-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 101 ALPLEVRGKKEREIQRRVGAALRQV--GLEH--KADAFPEQLSGGEQQRVAIARAIVNSP---PLLLADEPTGNLDPDLS 173 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhCCC---CEEEEeCCcccCCHHHH
Confidence 0 0011111111 1110 111111479999999999999999888 3655 9999999877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+.+.+++.. +|...++...|+..+++.++
T Consensus 174 --~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 174 --ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 77777776531 67777777777777666544
No 237
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4e-12 Score=92.01 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=99.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~ 96 (228)
..++.++|..|+|||.|+...+.... ......++..+....... ......+++|||.| ++.+ ..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF--~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG------------qe~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF--QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG------------QESFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc--cccccceeeeeeceeEEEEcCceEEEEEEecCC------------cHHHHHH
Confidence 36899999999999999999998765 111222233333332222 12344689999999 3433 33
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
....++.+...|+|.|++.+-|+... +||+-++......+ -++|+.||+|+... +.+.+ .+-..+
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~----------EEGeaF 137 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSK----------EEGEAF 137 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccH----------HHHHHH
Confidence 44567888999999999977777654 57777777643332 35567799999876 55432 122233
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 204 (228)
|...-+++- ..||.+..+++|.+.-+
T Consensus 138 A~ehgLifm---ETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 138 AREHGLIFM---ETSAKTAENVEEAFINT 163 (216)
T ss_pred HHHcCceee---hhhhhhhhhHHHHHHHH
Confidence 333333333 45788889999887544
No 238
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=2.1e-13 Score=103.64 Aligned_cols=170 Identities=16% Similarity=0.065 Sum_probs=102.8
Q ss_pred CCCCccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCC
Q 027090 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGL 79 (228)
Q Consensus 7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~ 79 (228)
....+....-+++..++|+||+|||||||+|.|.+...+.+|. +........ ........-.+++...+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~----v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE----VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce----EEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 3344455566778899999999999999999999998765542 222111100 00011223466777777
Q ss_pred CCCCCCcHHHHH----------HHHHHHhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090 80 FDLSAGSEFVGK----------EIVKCLGMAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT 145 (228)
Q Consensus 80 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~il~v~-~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~ 145 (228)
....+..+++.- +...........+..-=... .....+|+|++|++.++++++.+| .+++ |..
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P---~iilADEPTg 171 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP---KIILADEPTG 171 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC---CeEEeeCccc
Confidence 666655554320 00000000000101110111 112479999999999999999888 4777 888
Q ss_pred CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCC
Q 027090 146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
.+|..+. ..+.+.+.+.. +|+. ++...|++++.+.++.
T Consensus 172 nLD~~t~--~~V~~ll~~~~~~~g~tii~VTHd~-~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 172 NLDSKTA--KEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELKDGK 219 (226)
T ss_pred cCChHHH--HHHHHHHHHHHHhcCCEEEEEcCCH-HHHHhCCEEEEEeCCe
Confidence 8898777 77777776642 4555 3456888888888776
No 239
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.45 E-value=3.6e-13 Score=103.42 Aligned_cols=158 Identities=15% Similarity=0.062 Sum_probs=94.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
-.++.+++|+|+||+|||||+++|+|...+..| .+......... .........+.+.|.+.......++..
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 98 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG----TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENIT 98 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHH
Confidence 356789999999999999999999998764444 22222111100 001112234555555443222211110
Q ss_pred ---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 ---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
+.....+... +.+. +.-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP~~~LD~~~~ 171 (213)
T cd03262 99 LAPIKVKGMSKAEAEERALELLEKV--GLAD--KADAYPAQLSGGQQQRVAIARALAMNPK---VMLFDEPTSALDPELV 171 (213)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhhCccccCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH
Confidence 0111111110 1111 1111124799999999999999998884 555 9999998776
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
+.+.+.+.+.. +|...++.+.|+..+++.++.
T Consensus 172 --~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 172 --GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77777666532 678888878888877776654
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=1.9e-12 Score=108.45 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccc--------------cc-----------------CCCCCcceeeEeEeeeeeCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------AS-----------------AGSSGVTKTCEMKTTVLKDG 68 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~~~~ 68 (228)
.+|+++|+.++|||||+++|+...-.. .+ ......|.+....... .++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence 379999999999999999986332100 01 0112344444333332 456
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D 148 (228)
..+.++||||.. ++...+......+|++++|+++..+....+.+.+.++..+ +.+ ++++++||+|
T Consensus 80 ~~~~liDtPGh~-----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~---~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHE-----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIR---HVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCC---cEEEEEEecc
Confidence 678999999932 2333333344578999999999877777666655555443 322 6888999999
Q ss_pred CCcc
Q 027090 149 DLED 152 (228)
Q Consensus 149 ~~~~ 152 (228)
....
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 8753
No 241
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.45 E-value=1.2e-14 Score=106.75 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=107.0
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
..-.++..|+++||||+||||.+.+++|...+.+|. ...++|...-+ ....-..-++-+.|.++...+..+++.
T Consensus 25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~---~RArlGigYLpQE~SIFr~LtV~dNi~ 101 (243)
T COG1137 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH---KRARLGIGYLPQEASIFRKLTVEDNIM 101 (243)
T ss_pred EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChH---HHhhcCcccccccchHhhcCcHHHHHH
Confidence 345667899999999999999999999988765552 11122211100 001111234555565554443333211
Q ss_pred HHHHHHHh-------------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchh
Q 027090 91 KEIVKCLG-------------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEK 155 (228)
Q Consensus 91 ~~~~~~~~-------------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~ 155 (228)
-+..... ...+.++.--+.-+....+|+++++++++++++..+|. ++++ ||+.+|+..- .
T Consensus 102 -~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~--fiLLDEPFAGVDPiaV--~ 176 (243)
T COG1137 102 -AVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK--FILLDEPFAGVDPIAV--I 176 (243)
T ss_pred -HHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC--EEEecCCccCCCchhH--H
Confidence 0111100 00111222222233335799999999999999998885 5666 9999999866 6
Q ss_pred hHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 156 TLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 156 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.+..++..++ .|..++.+..|++.+++..|.+...
T Consensus 177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 7776666554 8999999999999999999987654
No 242
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.44 E-value=2.4e-13 Score=106.04 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... . . .......+.+.|.++...+..+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~ 98 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG----SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMV 98 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc----eEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHH
Confidence 356789999999999999999999998764444 22221111000 0 0 0111234455555544322222110
Q ss_pred -----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090 91 -----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF 144 (228)
Q Consensus 91 -----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~ 144 (228)
......+... +... +.-.....+|+|+++++.++++++.+| ++++ |+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~llllDEPt 171 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERV--GLAD--LADRPAGELSYGQQRRLEIARALATDP---KLLLLDEPA 171 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHc--Cccc--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCc
Confidence 0011111110 1111 111112479999999999999999888 3666 99
Q ss_pred eCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 145 TGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 145 ~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+|.... ..+.+++++.. +|+...+...|+..+++.++.+.
T Consensus 172 ~~LD~~~~--~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 172 AGLNPEET--EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred ccCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 99998877 77777776532 79999998999999998888754
No 243
>PLN00023 GTP-binding protein; Provisional
Probab=99.44 E-value=2.9e-12 Score=102.39 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeeee--------------CCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK--------------DGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~~iDtpG~ 79 (228)
.....+|+|+|..|||||||++.+.+.... .....|+.... ...... ....+.++||+|-
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~----~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSI----ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcc----cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 334479999999999999999999987541 11222322211 111110 1245899999992
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--------c--ccccEEEEEeCCC
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--------N--VFDYMIVVFTGGD 148 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--------~--~~~~~llv~~~~D 148 (228)
. .+.......+..++++|+|+|++++-|.... .|++.+...... + ...|++||.||+|
T Consensus 94 E-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 94 E-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred h-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 2 2233334456789999999999976666554 466666654210 0 1137899999999
Q ss_pred CCcc
Q 027090 149 DLED 152 (228)
Q Consensus 149 ~~~~ 152 (228)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 8643
No 244
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.44 E-value=3.6e-13 Score=111.96 Aligned_cols=160 Identities=14% Similarity=0.063 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcH------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSE------ 87 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~------ 87 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.+.......+
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG----~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAG----TVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCc----EEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 56789999999999999999999998765444 22222111100 000111223344444321111111
Q ss_pred ------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 88 ------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 88 ------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
...+.....+... +.--+.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~le~v----gl~~~~~~~~~~LSgGerQRv~IArAL~~~P~---iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 103 TPHRSRFDTWTETDRAAVERAMERT----GVAQFADRPVTSLSGGERQRVLLARALAQATP---VLLLDEPTASLDINHQ 175 (402)
T ss_pred chhcccccCCCHHHHHHHHHHHHHc----CCchhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH
Confidence 0001111122111 11101111125799999999999999999884 555 9999999876
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.++.++++++. +|++..+.+.|++.+++.++.+..
T Consensus 176 --~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 176 --VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred --HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 77777666543 799999999999999999887653
No 245
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.44 E-value=1.6e-11 Score=86.97 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+.+|+++|..||||||+++.+.|... ....+|.-.+..... .+...+.++|.-| + +.+..+.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~-~~~~~L~iwDvGG-------q----~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLE-YKGYTLNIWDVGG-------Q----KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEE-ecceEEEEEEcCC-------c----chhHHHH
Confidence 367999999999999999999998863 223455555555444 6778899999988 2 3344444
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
...++..|+++||+|.+.+....+- +.+..+..--+- .-.|++++.||.|.... -..+.+.. .-.+.++.+.+
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl-aG~~~Lvlank~dl~~~--l~~~~i~~---~~~L~~l~ks~ 151 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL-AGAPLLVLANKQDLPGA--LSLEEISK---ALDLEELAKSH 151 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh-cCCceEEEEecCcCccc--cCHHHHHH---hhCHHHhcccc
Confidence 4555566999999998755555442 222222211000 11269999999998743 22222111 11256666666
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.+++...+. +++++.+-++++..-+.+
T Consensus 152 ~~~l~~cs~~------tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 152 HWRLVKCSAV------TGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CceEEEEecc------ccccHHHHHHHHHHHHHH
Confidence 6666655554 445566666666554443
No 246
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=90.98 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-HH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-CL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~~ 97 (228)
.+|+|+|.+|+|||||+-.++...+- ......+..++...... ..+...+.+|||+| +|.++ ..
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG------------qErFRtLT 77 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG------------QERFRTLT 77 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccc------------hHhhhccC
Confidence 79999999999999999998866541 11122233344333322 12344689999999 44444 44
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
...++++..+|+|.|++.+-+..... |++.+-....++. --.++|.||+|.... +.+. .++=++++
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~d-iikmlVgNKiDkes~--R~V~----------reEG~kfA 144 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPD-IIKMLVGNKIDKESE--RVVD----------REEGLKFA 144 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCcc-HhHhhhcccccchhc--cccc----------HHHHHHHH
Confidence 46678999999999999666665443 5565655544442 123458899997643 3332 12222333
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
...-++|... +|++..+++..++.+...+
T Consensus 145 r~h~~LFiE~---SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 145 RKHRCLFIEC---SAKTRENVQCCFEELVEKI 173 (209)
T ss_pred HhhCcEEEEc---chhhhccHHHHHHHHHHHH
Confidence 3333344333 6777888888776554433
No 247
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=2.6e-13 Score=104.04 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------ 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~------ 90 (228)
.++.+++|+|+||||||||+++|+|...+.+| .+......... ........+.+.|.+....+..+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 98 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSG----EVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK 98 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc
Confidence 46679999999999999999999998764444 22211110000 01112234455555544322222210
Q ss_pred --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
+.+...+... +... ..-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.+
T Consensus 99 ~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---~lllDEP~~~LD~~~~--~~~~~ 169 (210)
T cd03269 99 GLKKEEARRRIDEWLERL--ELSE--YANKRVEELSKGNQQKVQFIAAVIHDPE---LLILDEPFSGLDPVNV--ELLKD 169 (210)
T ss_pred CCChHHHHHHHHHHHHHc--CChH--HHhCcHhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHHH
Confidence 0011111110 1110 0111124799999999999999998883 555 9999998877 77777
Q ss_pred HhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090 160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.++... +|....+.+.|+..+++.++.+
T Consensus 170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 776532 6888888888888888777654
No 248
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.44 E-value=2.6e-12 Score=111.94 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcc-cc-----cC-------CCCCcceeeEeEeeee----eCCcEEEEEeCCCCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAF-KA-----SA-------GSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFD 81 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~-~~-----~~-------~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG~~~ 81 (228)
-++++|+|+.++|||||++.|+...-. .. .. .....|.......... .....+.++||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 478999999999999999999754210 00 00 0113343332222211 1124689999999654
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
. ..++..+ ...+|++++|+|++.+.+..+...+..+.. .. .|+++++||+|.... . .....
T Consensus 83 F-------~~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~--~-~~~~~ 143 (595)
T TIGR01393 83 F-------SYEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA--D-PERVK 143 (595)
T ss_pred H-------HHHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc--C-HHHHH
Confidence 2 1233333 346699999999987777766654443332 12 278999999998643 1 11111
Q ss_pred hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
++ +.+... +. ....+..||.++.++++|++.|.+.++..
T Consensus 144 ~e-----l~~~lg-~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 144 KE-----IEEVIG-LD-----ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HH-----HHHHhC-CC-----cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 22 222211 10 01134568888999999999998887754
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=114.98 Aligned_cols=69 Identities=14% Similarity=-0.021 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|++.++.++++++.+|. ++| |.||+|.... .|+++++..+. +|+..-+...|..++.+..+
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pD---lLLLDEPTNHLD~~~i--~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPD---LLLLDEPTNHLDLESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcccCHHHH--HHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC
Confidence 5899999999999999999986 555 9999999988 99999998877 89999999999999888777
Q ss_pred CCc
Q 027090 186 KTK 188 (228)
Q Consensus 186 ~~~ 188 (228)
...
T Consensus 227 ~l~ 229 (530)
T COG0488 227 KLT 229 (530)
T ss_pred cee
Confidence 543
No 250
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.44 E-value=2.5e-12 Score=108.65 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC---Ccc-----------ccc---------------CCCCCcceeeEeEeeeee
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR---KAF-----------KAS---------------AGSSGVTKTCEMKTTVLK 66 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~---~~~-----------~~~---------------~~~~~~t~~~~~~~~~~~ 66 (228)
.++..+|+++|+.++|||||+++|+.. ... ..+ ......|.+....... .
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-T 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-c
Confidence 345588999999999999999999742 110 000 0122445444443332 4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccccEEEE
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVV 143 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s---~~~~~~l~~~~~~~~~~~~~~~llv 143 (228)
+...+.++||||.. ++...+......+|++++|+|++.+.+ ......+.++. .++. ++++++
T Consensus 83 ~~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~~---~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLGI---NQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcCC---CeEEEE
Confidence 56679999999932 233333334457899999999986522 22223233332 2332 268899
Q ss_pred EeCCCCCc
Q 027090 144 FTGGDDLE 151 (228)
Q Consensus 144 ~~~~D~~~ 151 (228)
+||+|...
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999864
No 251
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=1.5e-13 Score=103.99 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=112.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHH-
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV- 89 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~- 89 (228)
..+..-+++...+++|+||+||||++++|+|...+.+| .++......... ..++.-++-.-.|++...+..+++
T Consensus 20 ~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G----~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~ 94 (300)
T COG4152 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG----EITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLK 94 (300)
T ss_pred ceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc----eEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHH
Confidence 35566678899999999999999999999998775444 333332222111 122223444455555544433322
Q ss_pred ---------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchhhHH
Q 027090 90 ---------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~~~~ 158 (228)
.+++...+..+.++.++.-...+.-..+|.+.+|.+.++.+.++.|. -+|+ ||+.+|+.+. +-+.
T Consensus 95 yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe--LlILDEPFSGLDPVN~--elLk 170 (300)
T COG4152 95 YLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE--LLILDEPFSGLDPVNV--ELLK 170 (300)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCC--EEEecCCccCCChhhH--HHHH
Confidence 01122222222234444444444446899999999999999999985 3444 9999999988 8888
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+++ +|.+..+.+.|++.+.+..|...
T Consensus 171 ~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 8777665 89999999999999888777644
No 252
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.3e-13 Score=104.40 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=101.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.-.++..++|+|++|||||||.++|.|...+.+| .++........ .........+-|-.+-..........
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G----~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~ 104 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSG----SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI 104 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc----eEEECCcccCccccchhhccceeEEecCCccccCcchhHHHH
Confidence 3456789999999999999999999999875554 44433322111 01111122233322222211111111
Q ss_pred HHH-------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccch
Q 027090 90 GKE-------------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHE 154 (228)
Q Consensus 90 ~~~-------------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~ 154 (228)
..| +...+... .-... +..+....+|+|+++++.+++++..+|+ .+++ +++.+|....
T Consensus 105 l~Epl~~~~~~~~~~~i~~~L~~V-gL~~~--~l~R~P~eLSGGQ~QRiaIARAL~~~Pk--lLIlDEptSaLD~siQ-- 177 (252)
T COG1124 105 LSEPLRPHGLSKSQQRIAELLDQV-GLPPS--FLDRRPHELSGGQRQRIAIARALIPEPK--LLILDEPTSALDVSVQ-- 177 (252)
T ss_pred HhhhhccCCccHHHHHHHHHHHHc-CCCHH--HHhcCchhcChhHHHHHHHHHHhccCCC--EEEecCchhhhcHHHH--
Confidence 111 11111111 00011 1112224699999999999999988885 3343 8899998877
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.++.+++...+ +|++.-+...|++++++.+|.+...
T Consensus 178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 88888777665 8999999999999999999986543
No 253
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=6.5e-13 Score=103.40 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=99.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+..| .+.......... ........+.+.|.++...+..+++.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSG----SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence 56789999999999999999999998764444 232222111000 00122345566666654333222221
Q ss_pred HHH----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 KEI----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ~~~----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
... ...........+.--+.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---lllLDEP~~~LD~~~~--~~l 179 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK---VLLCDEATSALDPETT--QSI 179 (233)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCCcCCHHHH--HHH
Confidence 000 0000000011111001111124799999999999999998883 555 9999998877 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.+.+.. +|....+.+.|+..+++.++.+..
T Consensus 180 ~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 76665431 789998888999998888887643
No 254
>PRK10218 GTP-binding protein; Provisional
Probab=99.43 E-value=4.2e-12 Score=110.42 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 83 (228)
.-++|+|+|+.++|||||+++|+...- +... ......|........ .+++..+.++||||..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhH
Confidence 347899999999999999999986311 1110 011223333332222 2567789999999965431
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.++.. ....+|++++|+|+..+....++..+..+... + .|.++++||+|....
T Consensus 83 -------~~v~~----~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 -------GEVER----VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA 135 (607)
T ss_pred -------HHHHH----HHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence 22223 33567999999999876666666666655442 2 267889999998643
No 255
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.43 E-value=5.8e-13 Score=104.95 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=96.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+....... ........++.+.|.+.......+.+.
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G----~i~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 108 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG----ELLAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG 108 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccc
Confidence 356789999999999999999999998764444 222111100 001122234555565544322222211
Q ss_pred ---HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090 91 ---KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 91 ---~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~ 164 (228)
......+... +... +.-.....+|+|+++++.++++++.++. +++ |++.+|.... ..+.+.+.+.
T Consensus 109 ~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGqkqrl~laraL~~~p~---lllLDEPt~~LD~~~~--~~l~~~L~~~ 179 (257)
T PRK11247 109 QWRDAALQALAAV--GLAD--RANEWPAALSGGQKQRVALARALIHRPG---LLLLDEPLGALDALTR--IEMQDLIESL 179 (257)
T ss_pred hHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHH
Confidence 1111111111 1110 1111125799999999999999998884 555 9999998877 7776666542
Q ss_pred ----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090 165 ----C------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 165 ----~------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
. +|+...+...|+..+++.++.+
T Consensus 180 ~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 180 WQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 1 7999998899998888877654
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.43 E-value=2.4e-12 Score=113.59 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=77.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC-----------------CCCCcceeeEeEee
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT 63 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~ 63 (228)
+.++..+|+++|+.++|||||+++|+...-.. .+. .....|.+......
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44556789999999999999999998643210 000 01223333332222
Q ss_pred eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEE
Q 027090 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (228)
Q Consensus 64 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv 143 (228)
. .++..+.++||||.. ++...+......+|++++|+++..+....++..+.++... +.+ +++++
T Consensus 100 ~-~~~~~~~liDtPG~~-----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~---~iivv 163 (632)
T PRK05506 100 A-TPKRKFIVADTPGHE-----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIR---HVVLA 163 (632)
T ss_pred c-cCCceEEEEECCChH-----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCC---eEEEE
Confidence 2 456678999999932 2222233334578999999999877666555555555433 323 68899
Q ss_pred EeCCCCCc
Q 027090 144 FTGGDDLE 151 (228)
Q Consensus 144 ~~~~D~~~ 151 (228)
+||+|...
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999874
No 257
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=9.4e-12 Score=89.28 Aligned_cols=112 Identities=22% Similarity=0.216 Sum_probs=66.6
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee---CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
|+|++|+|||||+|+|++....... ...|. ......... ....+.++|+||.... .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 5899999999999999987652111 11221 221111111 2456899999995432 1111334
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l--~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+..|++++++++....+......+ ......... ..|+++++||+|....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEE 117 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccc
Confidence 4577999999999854444443322 112111122 2489999999998765
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=6.9e-13 Score=99.00 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
+++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+...... .
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~-----~ 94 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV-----L 94 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCH-----H
Confidence 46679999999999999999999998764433 22221111100 0011122345555554432111 1
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--- 165 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--- 165 (228)
+ .+ .+ .+|.|+++++.++++++.++ ++++ |++.+|.... ..+.+.+++..
T Consensus 95 ~---~l----------~~------~lS~G~~qr~~la~al~~~p---~llilDEP~~~LD~~~~--~~l~~~l~~~~~~~ 150 (178)
T cd03229 95 E---NI----------AL------GLSGGQQQRVALARALAMDP---DVLLLDEPTSALDPITR--REVRALLKSLQAQL 150 (178)
T ss_pred H---he----------ee------cCCHHHHHHHHHHHHHHCCC---CEEEEeCCcccCCHHHH--HHHHHHHHHHHHhc
Confidence 1 00 00 08999999999999999888 4665 8999998876 77766665421
Q ss_pred -------CchHHHHHHhcCCeEEEee
Q 027090 166 -------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 166 -------~~~~~~~~~~~~~~~~~~~ 184 (228)
+|+...+...|+..+++.+
T Consensus 151 ~~tiii~sH~~~~~~~~~d~i~~l~~ 176 (178)
T cd03229 151 GITVVLVTHDLDEAARLADRVVVLRD 176 (178)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 5666666666666655544
No 259
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=3.5e-13 Score=110.75 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK--- 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~--- 91 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++.-
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSG----EIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 345679999999999999999999998775444 2222221110 00011223456666666654333332210
Q ss_pred -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.....+... +++. +.-.....+|+|+++++.+++++..+|. +++ |++.+|.... ..+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~QRvalARAL~~~P~---llLLDEP~s~LD~~~r--~~l 173 (356)
T PRK11650 103 IRGMPKAEIEERVAEAARIL--ELEP--LLDRKPRELSGGQRQRVAMGRAIVREPA---VFLFDEPLSNLDAKLR--VQM 173 (356)
T ss_pred hcCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence 011111110 1111 1111225799999999999999998884 555 9999998877 766
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
...+++.. +|+..++...|+..+++.++++..
T Consensus 174 ~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 174 RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 66655432 799999999999999998887643
No 260
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.43 E-value=7.5e-13 Score=109.46 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.+.++...+..+++.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G----~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG----DLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence 346679999999999999999999998775444 22221111100 001112345556665554333222221
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|.... ..+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~l--gL~~--~~~~~~~~LSgGq~QRvaLAraL~~~P~---lLLLDEPts~LD~~~~--~~l 172 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVL--QLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPS---VFLLDEPLSNLDAALR--VQM 172 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHc--CChh--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence 0011111110 1110 1111124799999999999999998884 555 9999998876 666
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.+++.. +|+..++...|+..+++.++.+..
T Consensus 173 ~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 66555431 799999999999999998887653
No 261
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=8.4e-14 Score=104.84 Aligned_cols=165 Identities=15% Similarity=0.068 Sum_probs=104.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--------CCcEEEEEeCCCCCCCCCCc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGS 86 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~~iDtpG~~~~~~~~ 86 (228)
.-+++..|+|+|++|+|||||+++|.|...+.+| .+.... ...... ....-.+++-|++......-
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G----~i~~~g--~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~ 99 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG----EILFNG--VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVL 99 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc----eEEecc--cchhccchHHHHHHHHhceeEeccCCcccccHHH
Confidence 3456789999999999999999999996554333 222211 111101 11224566666554332221
Q ss_pred HHHHHH-------HHHHHhh-----------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090 87 EFVGKE-------IVKCLGM-----------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT 145 (228)
Q Consensus 87 ~~~~~~-------~~~~~~~-----------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~ 145 (228)
++...- +...... +.++++..=..+.-.+.+|+++++++.+++++..++. ++| |++
T Consensus 100 ~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk---iILADEPva 176 (258)
T COG3638 100 ENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK---IILADEPVA 176 (258)
T ss_pred HHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC---EEecCCccc
Confidence 111000 0000000 0112222222222236899999999999999998884 788 999
Q ss_pred CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
-+|+... ..+.+++++.. .|.++-..++|++.+-+.++++...
T Consensus 177 sLDp~~a--~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 177 SLDPESA--KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred ccChhhH--HHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 9999988 88888887764 6899999999999998888887654
No 262
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.43 E-value=4.5e-12 Score=100.74 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc--ccc-CCC-------------CCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAF--KAS-AGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~--~~~-~~~-------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 84 (228)
+|+|+|++|+|||||+++|++.... ..+ ... ...+....... ..+++..+.++||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~-~~~~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAP-LEWKGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEE-EEECCEEEEEEECcCHHHH--
Confidence 5899999999999999999753211 001 000 01111111111 2245677899999995421
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..+...+ ...+|.+++++++..+........++.+... . .|.++++||+|....
T Consensus 78 -----~~~~~~~----l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~---~--~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRAA----LRAADAALVVVSAQSGVEVGTEKLWEFADEA---G--IPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHHH----HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCccCCC
Confidence 1222333 3466999999999876666656555544322 2 278899999998754
No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.43 E-value=6.3e-13 Score=99.60 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=87.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee----eeCCcEEEEEeCC---CCCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTP---GLFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtp---G~~~~~~~~~~ 88 (228)
-+++..++|+|+||+|||||++.|+|...+.+| .++......... ........+.+.| ++....+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~--- 95 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASG----EITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSV--- 95 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcH---
Confidence 346679999999999999999999998764444 333222111000 0011223344443 23322211
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC 165 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~ 165 (228)
.+...... .+|.++++++.++++++.+| ++++ |++.+|.... ..+.+.+.+..
T Consensus 96 --~e~l~~~~-----------------~LS~G~~qrl~la~al~~~p---~llllDEP~~~LD~~~~--~~l~~~l~~~~ 151 (182)
T cd03215 96 --AENIALSS-----------------LLSGGNQQKVVLARWLARDP---RVLILDEPTRGVDVGAK--AEIYRLIRELA 151 (182)
T ss_pred --HHHHHHHh-----------------hcCHHHHHHHHHHHHHccCC---CEEEECCCCcCCCHHHH--HHHHHHHHHHH
Confidence 11111100 08999999999999999888 4666 9999998877 77777666532
Q ss_pred ---------CchHHHHHHhcCCeEEEeeCC
Q 027090 166 ---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 166 ---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
+|...++...|+..+++.++.
T Consensus 152 ~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 152 DAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 677777777787777766553
No 264
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=5.2e-13 Score=104.47 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-.++.+++|+|+||||||||+++|+|...+.+| .+.......... ........+.+.+.++...+..+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 98 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG----SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLEN 98 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc----eEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHH
Confidence 3456789999999999999999999998764444 222211111000 001112334444444332221111
Q ss_pred HH----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090 89 VG----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V 143 (228)
Q Consensus 89 ~~----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v 143 (228)
+. +.....+.. .+.--+.-.....+|.|+++++.++++++.+|. +++ |
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP 171 (241)
T cd03256 99 VLSGRLGRRSTWRSLFGLFPKEEKQRALAALER----VGLLDKAYQRADQLSGGQQQRVAIARALMQQPK---LILADEP 171 (241)
T ss_pred HHhhhcccchhhhhhcccCcHHHHHHHHHHHHH----cCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCc
Confidence 10 011111111 111001111124799999999999999998884 666 9
Q ss_pred EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
++.+|.... ..+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 172 t~~LD~~~~--~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 172 VASLDPASS--RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred cccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999998877 77777665431 78999998899999999888754
No 265
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.43 E-value=2.6e-12 Score=109.35 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC-----------------CCCCcceeeEeEee
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT 63 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~ 63 (228)
..++..+|+++|+.++|||||+++|+...-.. .+. .....|.+......
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35666899999999999999999987542100 010 01234444433332
Q ss_pred eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEE
Q 027090 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (228)
Q Consensus 64 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv 143 (228)
. .+...+.++||||.. .+...+......+|++++|+++..+....+.+.+.++..+ +. ++++++
T Consensus 103 ~-~~~~~i~~iDTPGh~-----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~---~~iIvv 166 (474)
T PRK05124 103 S-TEKRKFIIADTPGHE-----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GI---KHLVVA 166 (474)
T ss_pred c-cCCcEEEEEECCCcH-----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CC---CceEEE
Confidence 2 456678999999932 2222222234678999999999877666555554444433 32 368899
Q ss_pred EeCCCCCc
Q 027090 144 FTGGDDLE 151 (228)
Q Consensus 144 ~~~~D~~~ 151 (228)
+||+|...
T Consensus 167 vNKiD~~~ 174 (474)
T PRK05124 167 VNKMDLVD 174 (474)
T ss_pred EEeecccc
Confidence 99999874
No 266
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=1e-12 Score=104.44 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---e----eCCcEEEEEeCCCCCCCCCCcH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---L----KDGQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~----~~~~~~~~iDtpG~~~~~~~~~ 87 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+.......... . .......+.+.|.++...+..+
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G----~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 121 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG----KVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLE 121 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHH
Confidence 3456789999999999999999999998765444 222222111000 0 0112345556666554333222
Q ss_pred HHHH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 88 FVGK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 88 ~~~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
.+.- .+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|..
T Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrv~lAral~~~p~---illLDEPt~~LD~~ 194 (269)
T cd03294 122 NVAFGLEVQGVPRAEREERAAEALELV--GLEG--WEHKYPDELSGGMQQRVGLARALAVDPD---ILLMDEAFSALDPL 194 (269)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHH
Confidence 2110 001111110 1110 1111114799999999999999998884 555 99999988
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+.+.. +|.+..+...|+..+++.++.+.
T Consensus 195 ~~--~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 195 IR--REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred HH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 77 77777665431 68999988999999888887754
No 267
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.42 E-value=5.7e-12 Score=95.98 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=66.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee---eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+|+|+|++|||||||++.|.+......- + ++......... ..+..+.++||||... ....+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~----~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~-- 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV----T-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLE-- 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc----C-cEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHH--
Confidence 6899999999999999999987542211 1 11111111111 1356789999999442 1122222
Q ss_pred hhccCCc-cEEEEEEeCCCCC-CHHH-HHHH-HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 98 GMAKDGI-HAFLVVFSVTNRF-SQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 98 ~~~~~~~-~~il~v~~~~~~~-s~~~-~~~l-~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..... +++++++|+.... +..+ ..++ .++..........|++++.||+|+...
T Consensus 68 --~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 68 --TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred --HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 22344 9999999998431 1111 2222 222221111112389999999998643
No 268
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.42 E-value=5.7e-13 Score=109.41 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-- 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-- 93 (228)
+++..++|+|+||||||||+++|.|...+.+| .+......... .........+.+.+.++...+..+++.-..
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G----~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG----TIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN 103 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence 45679999999999999999999999875544 22222211110 001122346667777665544333321100
Q ss_pred --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
........+..+.--+.-.....+|+|+++++.++++++.+|. +++ |++.+|...+ .++...++
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~---llLLDEP~s~LD~~~r--~~l~~~L~ 178 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG---LLLLDEPLSALDARVR--EHLRTEIR 178 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHHH
Confidence 0000000011111001111224799999999999999998884 555 9999998877 77777665
Q ss_pred ccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 163 HEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.. +|+..++...|++.+++.+|.+..
T Consensus 179 ~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~ 215 (353)
T TIGR03265 179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ 215 (353)
T ss_pred HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 432 899999999999999999987653
No 269
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.42 E-value=4.6e-13 Score=104.19 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+......... . . .......+.+.|.+....+..+...-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 98 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG----KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILA 98 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHH
Confidence 346679999999999999999999998765444 22221111100 0 0 00112344555554443222221100
Q ss_pred --------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 92 --------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 92 --------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
.+...+... +... ..-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEPt~~LD~~~~-- 169 (232)
T cd03218 99 VLEIRGLSKKEREEKLEELLEEF--HITH--LRKSKASSLSGGERRRVEIARALATNP---KFLLLDEPFAGVDPIAV-- 169 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHHHH--
Confidence 000111100 1110 011111479999999999999999888 4655 9999998877
Q ss_pred hhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.++... +|+...+.+.|+..+++.++.+.
T Consensus 170 ~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 170 QDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 77776665432 78999999999999999888764
No 270
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=7.8e-13 Score=108.43 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=99.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.|.+....+..++
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~en 102 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG----RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDN 102 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHH
Confidence 3456789999999999999999999998765444 22222111100 0 001122345566665543222222
Q ss_pred HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+. +.....+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|...
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p~---iLlLDEPts~LD~~~ 175 (343)
T PRK11153 103 VALPLELAGTPKAEIKARVTELLELV--GLSD--KADRYPAQLSGGQKQRVAIARALASNPK---VLLCDEATSALDPAT 175 (343)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHH
Confidence 10 0011111110 1110 1111124799999999999999998884 555 999999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.+.+.. +|.+..+.+.|+..+++.++.+.
T Consensus 176 ~--~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 176 T--RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7 77777766531 79999999999999999888764
No 271
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.7e-12 Score=94.00 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
++|+++|.+|+|||-|+-..+....-... ..++..+....... .++ ...++|||.| ++..+++
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~S--ksTIGvef~t~t~~-vd~k~vkaqIWDTAG------------QERyrAi 79 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLES--KSTIGVEFATRTVN-VDGKTVKAQIWDTAG------------QERYRAI 79 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCccc--ccceeEEEEeecee-ecCcEEEEeeecccc------------hhhhccc
Confidence 58999999999999999999877652222 22233333222222 233 3479999999 5555555
Q ss_pred h-hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 98 G-MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 98 ~-~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
. ..++++...++|.|++.+.+.+.. +||..++.+..... +++||.||+|+...
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~l 134 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNHL 134 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhhc
Confidence 4 557899999999999988888765 58888888754443 67789999999864
No 272
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=5e-14 Score=104.77 Aligned_cols=168 Identities=15% Similarity=0.053 Sum_probs=104.2
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe----eeeeCCcEEEEEeCCCCCCCCCCcH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtpG~~~~~~~~~ 87 (228)
.+..-.++.+++|+||+|||||||+++|.+...+.+| .+..+..... ........-.+++...++.+.+..+
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G----~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG----SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc----eEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 3445567889999999999999999999999885555 4444332111 0001112235666666666554433
Q ss_pred HHHHHHHHHHhh--------c---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 88 FVGKEIVKCLGM--------A---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 88 ~~~~~~~~~~~~--------~---~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+...-....... + ...+...=-.-.....+|+|++|++.++++++-+|. +++ |.+.+|+.--
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~---vmLFDEPTSALDPElv- 172 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK---VMLFDEPTSALDPELV- 172 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC---EEeecCCcccCCHHHH-
Confidence 321111111000 0 000000000111125799999999999999977773 555 8899998765
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.++.+.+..+. +|.+.-.-+.+++++++..|.+.
T Consensus 173 -~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii 215 (240)
T COG1126 173 -GEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215 (240)
T ss_pred -HHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE
Confidence 67777666654 79999888888988888888554
No 273
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=8.4e-13 Score=101.26 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=95.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.++...+..++..
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 96 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG----RVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS 96 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccc
Confidence 356779999999999999999999998765444 22221111100 000112234445555443222211110
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +... +.-.....+|.++++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~ia~al~~~p~---llllDEP~~~LD~~~~--~~l 167 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARV--GLAG--LEKRLPGELSGGERQRVALARVLVRDKP---VLLLDEPFAALDPALR--AEM 167 (211)
T ss_pred cccCccHHHHHHHHHHHHHc--CCHH--HHhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence 1111111111 1110 1111124799999999999999998884 555 9999999877 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.+.+.+.. +|+...+.+.|++.+++.++.+
T Consensus 168 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 77665431 7888888888988888877754
No 274
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-11 Score=86.48 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.+++++|+.|+|||.|+..+.-..+-. ..+..+..+....-+. -.+...+++|||.| ++.++.+.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAG------------QErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG------------QERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeeccc------------HHHHHHHH
Confidence 489999999999999999988665522 2222333333222221 12345689999999 55455443
Q ss_pred -hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 99 -MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 -~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..++++...++|.|++++-|.... .||.-++.+.+... -++++.||-|+... +++. ..+..++|
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~--R~Vt----------flEAs~Fa 141 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE--REVT----------FLEASRFA 141 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh--hhhh----------HHHHHhhh
Confidence 567888999999999988888765 58888888765442 23446699998766 5543 33445666
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLS 202 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (228)
....+.+... ++.++++++|.+-
T Consensus 142 qEnel~flET---Sa~TGeNVEEaFl 164 (214)
T KOG0086|consen 142 QENELMFLET---SALTGENVEEAFL 164 (214)
T ss_pred cccceeeeee---cccccccHHHHHH
Confidence 6665554443 6778899988663
No 275
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=1.7e-11 Score=92.50 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-----CCCCCcceeeEeEeeeeeC-C--cEEEEEeCCCCCCCCCCcHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~~~~~~~~~~~~-~--~~~~~iDtpG~~~~~~~~~~ 88 (228)
....+|.++|.+|.|||||+|.|+....-.++ ....+.|++....+..... + -.+.++|||||+|....+..
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 34579999999999999999999876543321 1233455555444333222 2 24899999999998765543
Q ss_pred HHHHHHHH--------H--------hh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCC
Q 027090 89 VGKEIVKC--------L--------GM--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (228)
Q Consensus 89 ~~~~~~~~--------~--------~~--~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~ 149 (228)
+ +-+.++ + +. ..-++||++|++..+ ..+..-+...++-+.... +++-|+.|.|.
T Consensus 124 W-ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDt 196 (336)
T KOG1547|consen 124 W-EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADT 196 (336)
T ss_pred h-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccc
Confidence 3 111121 1 11 123789999999987 456777777666655442 68889999998
Q ss_pred CccchhhHHHHhhc
Q 027090 150 LEDHEKTLEDFLGH 163 (228)
Q Consensus 150 ~~~~~~~~~~~~~~ 163 (228)
..- ++-.++.+.
T Consensus 197 lTl--eEr~~Fkqr 208 (336)
T KOG1547|consen 197 LTL--EERSAFKQR 208 (336)
T ss_pred ccH--HHHHHHHHH
Confidence 876 555555544
No 276
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.4e-13 Score=107.76 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=103.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHH---
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~--- 90 (228)
.-+++..++|+||||||||||+++|.|...+.+| .+............. ...-.+++..-++.+.+..++..
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G----~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~L 100 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG----EILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL 100 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhh
Confidence 3456679999999999999999999999885554 444433333221122 23345666665555543322210
Q ss_pred -------HHHHHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 91 -------KEIVKCLGMAKD--GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 91 -------~~~~~~~~~~~~--~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
.++...+....+ +++-++ -.....+|+|++|++.+++++..+|. +++ |++.+|..-+ ..+.
T Consensus 101 k~~~~~k~ei~~rV~eva~~L~l~~lL--~r~P~~LSGGQrQRVAlaRAlVr~P~---v~L~DEPlSnLDa~lR--~~mr 173 (338)
T COG3839 101 KLRGVPKAEIDKRVKEVAKLLGLEHLL--NRKPLQLSGGQRQRVALARALVRKPK---VFLLDEPLSNLDAKLR--VLMR 173 (338)
T ss_pred hhCCCchHHHHHHHHHHHHHcCChhHH--hcCcccCChhhHHHHHHHHHHhcCCC---EEEecCchhHhhHHHH--HHHH
Confidence 111111111110 112122 12225799999999999999999884 555 8898997655 5555
Q ss_pred HHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+++.. +|+-.++...++++.++.+|.+...
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 5444422 8999999999999999988876543
No 277
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.42 E-value=8.4e-13 Score=101.75 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-------KDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
-+++..++|+|+||+|||||+++|+|...+.+| .+........... .......+.+.|.++...+..+.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG----EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce----eEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHH
Confidence 356779999999999999999999998764444 2222211110000 01122345555555443222221
Q ss_pred HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.. +.+...+... +.+.. .-.....+|.|+++++.++++++.+| ++++ |++.+|...
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~lllLDEP~~~LD~~~ 175 (218)
T cd03255 103 VELPLLLAGVPKKERRERAEELLERV--GLGDR--LNHYPSELSGGQQQRVAIARALANDP---KIILADEPTGNLDSET 175 (218)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHc--CCchh--hhcChhhcCHHHHHHHHHHHHHccCC---CEEEEcCCcccCCHHH
Confidence 10 0111111111 11111 11111479999999999999999888 4666 999999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeC
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 185 (228)
. ..+.+.+.+.. +|....+. .|+..+++.++
T Consensus 176 ~--~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G 216 (218)
T cd03255 176 G--KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216 (218)
T ss_pred H--HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence 7 77777666531 56666654 66666666554
No 278
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.42 E-value=9.7e-13 Score=107.45 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=101.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+.......... ........+.+.+.+....+..++.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G----~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG----SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHH
Confidence 456779999999999999999999999875544 222222111000 0012234556666665443332222
Q ss_pred HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.- .....+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~v~e~l~~v--gL~~--~~~~~~~~LSgGqkQRV~IARAL~~~P~---iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 104 ALPLELDNTPKDEIKRKVTELLALV--GLGD--KHDSYPSNLSGGQKQRVAIARALASNPK---VLLCDEATSALDPATT 176 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCHHHH
Confidence 10 001111110 1100 1111125799999999999999998884 666 9999999877
Q ss_pred chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+++.. +|.+..+.+.|++.+++.++.+.
T Consensus 177 --~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 177 --QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 77777766642 79999999999999999888764
No 279
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.42 E-value=5.5e-13 Score=104.47 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=95.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.|.+....+..+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 100 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG----SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV 100 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc----EEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHH
Confidence 356679999999999999999999998765444 22221111000 00011122334444433221111111
Q ss_pred ----------------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090 90 ----------------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF 144 (228)
Q Consensus 90 ----------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~ 144 (228)
.+.+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---llllDEPt 173 (243)
T TIGR02315 101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLAD--KAYQRADQLSGGQQQRVAIARALAQQPD---LILADEPI 173 (243)
T ss_pred hhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCc
Confidence 01111111111 1110 1111124799999999999999998884 666 99
Q ss_pred eCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 145 TGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 145 ~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+|.... ..+.+.+.+.. +|....+.+.|+..+++.++.+.
T Consensus 174 ~~LD~~~~--~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 174 ASLDPKTS--KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred ccCCHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99998876 77776665431 78999988999999999888754
No 280
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.42 E-value=9.2e-13 Score=101.03 Aligned_cols=157 Identities=20% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCC-CCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGL-FDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~-~~~~~~~~~~~- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... ........++.+.|.. .......+...
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~ 99 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG----EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF 99 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHH
Confidence 346789999999999999999999998764444 22222111100 0001112344444421 11111111110
Q ss_pred -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
......+... +.+. +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~~-- 170 (211)
T cd03225 100 GLENLGLPEEEIEERVEEALELV--GLEG--LRDRSPFTLSGGQKQRVAIAGVLAMDPD---ILLLDEPTAGLDPAGR-- 170 (211)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--
Confidence 0111111111 1111 1111225799999999999999998884 655 9999998877
Q ss_pred hhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090 155 KTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 155 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+.+.+.+.. +|...++...|+.++++.++
T Consensus 171 ~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 171 RELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 77777776532 67777777778777766554
No 281
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.42 E-value=9.2e-13 Score=101.23 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++.+++|+|+||+|||||++.|+|...+.+| .+.......... ........+.+.|.++......++..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~ 100 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG----TIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVA 100 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHH
Confidence 46679999999999999999999998764444 222221111000 01112345566666554322222211
Q ss_pred H--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 91 K--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 91 ~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
. .+...+... +.+. +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~- 172 (214)
T cd03292 101 FALEVTGVPPREIRKRVPAALELV--GLSH--KHRALPAELSGGEQQRVAIARAIVNSPT---ILIADEPTGNLDPDTT- 172 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc--CCHH--HhhCChhhcCHHHHHHHHHHHHHHcCCC---EEEEeCCCCcCCHHHH-
Confidence 0 011111110 1111 1111124799999999999999998884 555 9999998877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
..+.+.+++.. +|....+...|+..+++.++.
T Consensus 173 -~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 173 -WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred -HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77777666532 677777777777777665543
No 282
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.1e-12 Score=86.86 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=103.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
-.+|+++|..|+|||.|++.++....|..-. ..+..+.-..+.... +...+++|||.| ++.++.+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqg--atigvdfmiktvev~gekiklqiwdtag------------qerfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEVNGEKIKLQIWDTAG------------QERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCC--ceeeeeEEEEEEEECCeEEEEEEeeccc------------hHHHHHH
Confidence 3689999999999999999998666532211 122333333333322 234589999999 5555544
Q ss_pred h-hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 98 G-MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 98 ~-~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
. +.++.+|+++++.|++...|..- ..|+..+.....++. --++|.||+|...+ +++..-+-+ .+.+..
T Consensus 73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige----efs~~q-- 142 (213)
T KOG0095|consen 73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE----EFSEAQ-- 142 (213)
T ss_pred HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH----HHHHhh--
Confidence 4 45678899999999986666654 468888888876665 45678999999877 777654443 111111
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHH-HHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV-NSVIV 209 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~ 209 (228)
.- --...+|....+++.|+..+ .+++.
T Consensus 143 --dm-----yfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 143 --DM-----YFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred --hh-----hhhhhcccchhhHHHHHHHHHHHHHH
Confidence 00 11234666678898888544 34443
No 283
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.42 E-value=1.3e-12 Score=101.57 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=97.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK----- 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~----- 91 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+........ ........+.+.|++....+..+...-
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~--~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~ 82 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSG----GVILEGKQIT--EPGPDRMVVFQNYSLLPWLTVRENIALAVDRV 82 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECC--CCChhheEEecCcccCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999999765444 2222111110 001112345566665543222222100
Q ss_pred -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.....+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l 153 (230)
T TIGR01184 83 LPDLSKSERRAIVEEHIALV--GLTE--AADKRPGQLSGGMKQRVAIARALSIRPK---VLLLDEPFGALDALTR--GNL 153 (230)
T ss_pred ccCCCHHHHHHHHHHHHHHc--CCHH--HHcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCCcCCCHHHH--HHH
Confidence 001111100 1110 0111124799999999999999998884 555 9999998877 777
Q ss_pred HHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 158 EDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 158 ~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+. . +|.+..+.+.|+..+++.++.+.
T Consensus 154 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 7766542 1 79999999999999988887654
No 284
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.41 E-value=5.4e-13 Score=102.81 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.++......+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 104 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG----FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAG 104 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc----eEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHH
Confidence 46679999999999999999999998764444 22222211110 001122345566666554333222210
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
..+...+... +... +.-.....+|.++++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---illlDEPt~~LD~~~~--~~l 175 (218)
T cd03266 105 LYGLKGDELTARLEELADRL--GMEE--LLDRRVGGFSTGMRQKVAIARALVHDPP---VLLLDEPTTGLDVMAT--RAL 175 (218)
T ss_pred HcCCCHHHHHHHHHHHHHHc--CCHH--HHhhhhhhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcCCCHHHH--HHH
Confidence 0001111100 1100 0011114799999999999999998884 555 9999998877 777
Q ss_pred HHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090 158 EDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 158 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.+.+.+.. +|...++...|+..+++.++.+
T Consensus 176 ~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 176 REFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 77776542 6888888888888888877654
No 285
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=1.1e-12 Score=102.52 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=96.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+....+..+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSG----TILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 346679999999999999999999998765444 22221111000 000112234455555443222211110
Q ss_pred --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
..+...+... +... +.-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEP~~~LD~~~~- 172 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLV--QLDW--LADRYPAQLSGGQRQRVALARALAVEP---KVLLLDEPFGALDAKVR- 172 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHc--CChh--hhhcChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence 0011111111 1110 011111479999999999999999888 3666 9999998877
Q ss_pred hhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+. . +|....+...|++.+++.++.+.
T Consensus 173 -~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 173 -KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred -HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 7777766543 1 78999888999999998888764
No 286
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.2e-12 Score=108.74 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=101.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL------KDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~------~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+......... .. ......++.+.++++...+..++
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG----~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~en 126 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG----QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC----EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHH
Confidence 456789999999999999999999998775444 22222211100 00 01123456677776654333222
Q ss_pred HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+. +.....+... +.+. +.-.....+|+|+++++.++++++.+| +++| |++.+|...
T Consensus 127 l~~~~~~~~~~~~~~~~~~~e~L~~~--gL~~--~~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 127 TAFGMELAGINAEERREKALDALRQV--GLEN--YAHSYPDELSGGMRQRVGLARALAINP---DILLMDEAFSALDPLI 199 (400)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHc--CCCh--hhhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECCCccCCHHH
Confidence 21 0011111111 1111 111222579999999999999999888 4666 999999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.+.+.. +|++.++...|+.++++.++.+.
T Consensus 200 r--~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 200 R--TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred H--HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 7 77776665431 79999999999999999888754
No 287
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=7e-13 Score=102.35 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+.......+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 45679999999999999999999998765444 22211111000 000111233445454433222111110
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qr~~la~al~~~p~---llllDEPt~~LD~~~~--~~l 170 (220)
T cd03265 100 LYGVPGAERRERIDELLDFV--GLLE--AADRLVKTYSGGMRRRLEIARSLVHRPE---VLFLDEPTIGLDPQTR--AHV 170 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHc--CCHH--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCccCCCHHHH--HHH
Confidence 0111111111 1110 0111114799999999999999998884 655 9999998876 777
Q ss_pred HHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 158 EDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 158 ~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+. . +|+...+...|++.+++.++.+.
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 7666542 1 78999999999998888888764
No 288
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.41 E-value=2e-13 Score=104.52 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.+....+..+++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 99 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence 46679999999999999999999998765444 22211110000 001112234444454443222222110
Q ss_pred -----HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 91 -----KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 91 -----~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
+.....+... +... +.-.....+|.++++++.++.+++.+| ++++ |++.+|.... ..+.+.+.
T Consensus 100 ~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEPt~~LD~~~~--~~l~~~l~ 170 (208)
T cd03268 100 LGIRKKRIDEVLDVV--GLKD--SAKKKVKGFSLGMKQRLGIALALLGNP---DLLILDEPTNGLDPDGI--KELRELIL 170 (208)
T ss_pred cCCcHHHHHHHHHHc--CCHH--HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCcccCCHHHH--HHHHHHHH
Confidence 0011111100 1110 011112479999999999999999888 4666 9999999877 77776665
Q ss_pred ccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090 163 HEC---------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 163 ~~~---------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+.. +|+...+...|+..+++.++.+
T Consensus 171 ~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 171 SLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred HHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 431 7888888888888888877653
No 289
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=8e-13 Score=103.49 Aligned_cols=160 Identities=11% Similarity=0.014 Sum_probs=99.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---------eeeeCCcEEEEEeCCCCCCCCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---------TVLKDGQVVNVIDTPGLFDLSAGS 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---------~~~~~~~~~~~iDtpG~~~~~~~~ 86 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+........ ..........+.+.|.++...+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 100 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG----TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence 356779999999999999999999998764444 2222221110 000011234455666555432222
Q ss_pred HHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 87 EFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 87 ~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
+++.. .....+... +.+. +.-.....+|+|+++++.+++++..+| ++++ |++.+|
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llilDEPt~~LD 173 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERL--RLKP--YADRFPLHLSGGQQQRVAIARALMMEP---QVLLFDEPTAALD 173 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCcCC
Confidence 22110 001111110 1111 111112579999999999999999888 3555 899999
Q ss_pred CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.... ..+.+.+++.. +|+...+.+.|+..+++.++.+.
T Consensus 174 ~~~~--~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 174 PEIT--AQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHHH--HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 8877 77777776532 78999988899988888888764
No 290
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=1.3e-11 Score=107.32 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--ee---------------eCCcEEEEEeCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL---------------KDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~---------------~~~~~~~~iDtpG~~~~ 82 (228)
..|+++|+.++|||||+++|.+........ +..|........ .. ..-..+.++||||..+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~- 83 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA- 83 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH-
Confidence 489999999999999999998875422111 112211111100 00 0001268999999432
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
+...+.......|++++|++++.+........+..+... . .|+++++||+|..
T Consensus 84 ----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~ 136 (586)
T PRK04004 84 ----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI 136 (586)
T ss_pred ----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence 222222334567999999999876766666666655432 2 2799999999975
No 291
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.41 E-value=1.6e-12 Score=98.35 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=90.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
-.++.+++|+|+||+|||||++.|+|.. .+..| .+..................+.+.|.+.......+. +
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~----i 103 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG----EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET----L 103 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce----EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH----H
Confidence 3567899999999999999999999987 54333 222221111100011222344555555433222221 1
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-----
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----- 165 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----- 165 (228)
...... . .+|.++++++.++++++.++ ++++ |++.+|.... ..+.+.+++..
T Consensus 104 -~~~~~~----~----------~LS~G~~qrv~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~~~~t 163 (194)
T cd03213 104 -MFAAKL----R----------GLSGGERKRVSIALELVSNP---SLLFLDEPTSGLDSSSA--LQVMSLLRRLADTGRT 163 (194)
T ss_pred -HHHHHh----c----------cCCHHHHHHHHHHHHHHcCC---CEEEEeCCCcCCCHHHH--HHHHHHHHHHHhCCCE
Confidence 111000 0 79999999999999999888 4666 8899998877 77777666532
Q ss_pred ----CchHH-HHHHhcCCeEEEeeCCC
Q 027090 166 ----PKPLK-EILQLCDNRCVLFDNKT 187 (228)
Q Consensus 166 ----~~~~~-~~~~~~~~~~~~~~~~~ 187 (228)
+|+.. ++.+.|++.+++.++.+
T Consensus 164 iii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 164 IICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred EEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 57775 56677887777766653
No 292
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.41 E-value=9.8e-12 Score=108.52 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccc---c---------CCCCCcceeeEeEeee----eeCCcEEEEEeCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA---S---------AGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLF 80 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~---~---------~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~ 80 (228)
.-++++|+|+.++|||||+..|+...- ... + ......|......... ..+...+.++||||..
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 457999999999999999999965311 000 0 0012233332222111 1124568999999965
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~ 160 (228)
+. ..++.+++ ...|++++++|++.+....+...+..+.. .. .|+++++||+|.... .....
T Consensus 86 dF-------~~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a---~~~~v 146 (600)
T PRK05433 86 DF-------SYEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA---DPERV 146 (600)
T ss_pred HH-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc---cHHHH
Confidence 42 13333333 35699999999987777666554444332 12 278999999998643 12221
Q ss_pred hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+. +.+... +.. ...+..||.++.++++|++.|.+.++..
T Consensus 147 ~~e-----i~~~lg-~~~-----~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 KQE-----IEDVIG-IDA-----SDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHH-----HHHHhC-CCc-----ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 222 222211 110 1134568888899999999998888754
No 293
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=4.6e-13 Score=102.71 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
++ +++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.++......+...
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSG----TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence 46 9999999999999999999998765444 22211110000 001112234455555443322222211
Q ss_pred ---------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 91 ---------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 91 ---------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
+.+...+... +.... .-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEPt~~LD~~~~--~~l~ 170 (211)
T cd03264 100 KGIPSKEVKARVDEVLELV--NLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPS---ILIVDEPTAGLDPEER--IRFR 170 (211)
T ss_pred hCCCHHHHHHHHHHHHHHC--CCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHH
Confidence 0011111110 11100 011114799999999999999998884 555 9999999877 8888
Q ss_pred HHhhccC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090 159 DFLGHEC--------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 159 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+++++.. +|+...+.+.|++.+++.++.+
T Consensus 171 ~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 8777653 7888888888888877776653
No 294
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=107.62 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=99.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G----~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKG----RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 45679999999999999999999998765544 2222111100 000112233456666655443332222
Q ss_pred H--------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 90 G--------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 90 ~--------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
. +++...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qRvalaraL~~~p~---llLLDEPts~LD~~~~--~~l~ 168 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALL--GIEP--LLDRYPGSLSGGEKQRVAIGRALLTAPE---LLLMDEPLASLDLPRK--RELL 168 (352)
T ss_pred HhhhhhhhHHHHHHHHHHc--CCch--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH--HHHH
Confidence 1 0111111111 1111 1111124799999999999999998884 665 9999998876 7776
Q ss_pred HHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+++.. +|+..++...|+..+++.++.+..
T Consensus 169 ~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 169 PYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 6665431 789999999999999998887653
No 295
>PRK10908 cell division protein FtsE; Provisional
Probab=99.40 E-value=1.2e-12 Score=101.27 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.|.+.......+++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAG----KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA 101 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence 56789999999999999999999998765444 22222111100 0 00111234455554432222111110
Q ss_pred --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+.+...+... +... +.-.....+|.++++++.++++++.+| ++++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~- 173 (222)
T PRK10908 102 IPLIIAGASGDDIRRRVSAALDKV--GLLD--KAKNFPIQLSGGEQQRVGIARAVVNKP---AVLLADEPTGNLDDALS- 173 (222)
T ss_pred hHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCCchhCCHHHHHHHHHHHHHHcCC---CEEEEeCCCCcCCHHHH-
Confidence 0111111111 1110 111122579999999999999999888 3555 8999998776
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
..+.+.+.+.. +|+...+...|+..+++.++.+
T Consensus 174 -~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 174 -EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 67766666532 7888888888988888877764
No 296
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.40 E-value=1.3e-12 Score=107.26 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
.++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..++..
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG----HIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 46679999999999999999999998775444 2332221110 0001122345555555554332222211
Q ss_pred -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
+.....+... +... +.-.....+|+++++++.++++++.+|. +++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGq~QRvalArAL~~~P~---llLLDEP~s~LD~~~r-- 172 (353)
T PRK10851 102 LPRRERPNAAAIKAKVTQLLEMV--QLAH--LADRYPAQLSGGQKQRVALARALAVEPQ---ILLLDEPFGALDAQVR-- 172 (353)
T ss_pred cccccCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--
Confidence 1111111111 1110 1111125799999999999999998884 666 9999998876
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+++.. +|+..++...|++.+++.++++.
T Consensus 173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 67766665432 79999999999999999888764
No 297
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.40 E-value=8e-13 Score=103.49 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=98.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.+.+....+..+.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 100 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG----SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL 100 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----eEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence 446779999999999999999999998765444 22222211100 0 00111234455555443322221110
Q ss_pred ---------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090 91 ---------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG 146 (228)
Q Consensus 91 ---------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~ 146 (228)
......+... +... ..-.....+|.|+++++.++++++.+|. +++ |++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Ge~qrv~laral~~~p~---~lllDEPt~~ 173 (242)
T TIGR03411 101 ALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLAD--EADRLAGLLSHGQKQWLEIGMLLMQDPK---LLLLDEPVAG 173 (242)
T ss_pred hhhcccccccccccccHHHHHHHHHHHHHHc--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCccC
Confidence 0111111111 1111 1111124799999999999999998884 555 9999
Q ss_pred CCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 147 GDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+|.... ..+.+.++.+. +|....+...|++++++.++.+.
T Consensus 174 LD~~~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 174 MTDEET--EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHH--HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999877 78887777643 68999988899999998888764
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.40 E-value=7.1e-12 Score=102.13 Aligned_cols=175 Identities=17% Similarity=0.179 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---CcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..+|+|+|.+|+|||||||+|-|...-..+.... ..|.....+. ..+..++.+||.||++....+. +++..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~----~~Yl~ 108 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPP----EEYLK 108 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--H----HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCH----HHHHH
Confidence 4799999999999999999998754322222221 2233333332 2344568999999987654322 33444
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC-cc----chhh--HHHHhhccCCch
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED----HEKT--LEDFLGHECPKP 168 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~-~~----~~~~--~~~~~~~~~~~~ 168 (228)
.+.. ...|.+|++.+ .+++..+.+....++.. + |++++|-||+|.. .. .++. -+..+++.+.+-
T Consensus 109 ~~~~--~~yD~fiii~s--~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c 179 (376)
T PF05049_consen 109 EVKF--YRYDFFIIISS--ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC 179 (376)
T ss_dssp HTTG--GG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred Hccc--cccCEEEEEeC--CCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence 3332 35687666555 48888888776666543 2 2699999999951 00 0001 112222211111
Q ss_pred HHHHH--HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 169 LKEIL--QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 169 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.+.+. ..+...+++..+.-.. ..+.+.|.+.+.+-++...
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence 22221 1244566665554332 3678888888877766643
No 299
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.40 E-value=1.1e-12 Score=100.71 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=93.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-+++..++|+|+||+|||||++.|+|...+.+| .+......... .........+.+.+.+....+..+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG----RIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLK 98 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHH
Confidence 356789999999999999999999998765444 22221111100 000111233444454433222221110
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +.+. +.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qr~~laral~~~p~---llllDEPt~~LD~~~~--~~l 169 (213)
T cd03301 99 LRKVPKDEIDERVREVAELL--QIEH--LLDRKPKQLSGGQRQRVALGRAIVREPK---VFLMDEPLSNLDAKLR--VQM 169 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHc--CCHH--HHhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence 0111111111 1110 1111114799999999999999998884 555 9999998877 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.+.+.+.. +|+...+...|+..+++.++.+
T Consensus 170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 77665431 6888888888888877776654
No 300
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.40 E-value=1.4e-12 Score=107.43 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=99.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.|.++...+..+++
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG----EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 46679999999999999999999998765444 2222111110 000112234556666665543332222
Q ss_pred HH------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 90 GK------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 90 ~~------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
.- .+...+... +.+. +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGqkqRvalAraL~~~p~---lllLDEPts~LD~~~~-- 167 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELL--GIGH--LLGRLPGRLSGGEKQRVAIGRALLSSPR---LLLMDEPLAALDDPRK-- 167 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCCcCCCHHHH--
Confidence 10 001111100 1110 1111114799999999999999998884 666 9999998876
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+...+++.. +|+..++...|+..+++.++.+.
T Consensus 168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 77666665431 79999999999999999888764
No 301
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.40 E-value=1.6e-12 Score=102.27 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----------eeeCCcEEEEEeCCCCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----------VLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~~~~iDtpG~~~~~~ 84 (228)
-+++.+++|+|+||+|||||+++|+|...+..| .+......... .........+.+.|.+.....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG----TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 356779999999999999999999998764444 22211111000 000112234455555543322
Q ss_pred CcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090 85 GSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG 146 (228)
Q Consensus 85 ~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~ 146 (228)
..+.+.. .....+... +... ..-.....+|.|+++++.++++++.+| ++++ |++.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~Gq~qrv~la~al~~~p---~lllLDEPt~~ 174 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKV--GLAG--KETSYPRRLSGGQQQRVAIARALAMRP---EVILFDEPTSA 174 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCcc--hhhCChhhCChHHHHHHHHHHHHhcCC---CEEEEeCCCcc
Confidence 2222100 000111100 1111 111122579999999999999999888 4666 9999
Q ss_pred CCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 147 GDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+|.... ..+.+++.+.. +|+...+...|++.+++.++.+..
T Consensus 175 LD~~~~--~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 175 LDPELV--GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred CCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 998877 77777665432 789999888999999998887643
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.40 E-value=4.9e-12 Score=100.04 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc---------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--------- 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--------- 86 (228)
-.++.+++|+|+||+|||||+++|+|...+..| .+...... ..+...+++.......
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G----~I~~~g~~----------~~~~~~~~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG----KVDRNGEV----------SVIAISAGLSGQLTGIENIEFKMLC 112 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEE----------eEEecccCCCCCCcHHHHHHHHHHH
Confidence 346779999999999999999999998764444 22221110 0011122222111111
Q ss_pred -----HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 87 -----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 87 -----~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
+.........+... +.+.. .-.....+|.|+++++.++.+++.+|. +++ |++.+|.... ..+.
T Consensus 113 ~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~Gq~qrv~Laral~~~p~---iLlLDEPt~gLD~~~~--~~l~ 183 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFS--ELGEF--IYQPVKKYSSGMRAKLGFSINITVNPD---ILVIDEALSVGDQTFA--QKCL 183 (264)
T ss_pred cCCCHHHHHHHHHHHHHHc--CCchh--hcCCcccCCHHHHHHHHHHHHHhhCCC---EEEEeCccccCCHHHH--HHHH
Confidence 11100001111110 11111 111124799999999999999998883 555 9999998765 6666
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.... +|....+.+.|+..+++.++.+..
T Consensus 184 ~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 6554431 789999988999888888887653
No 303
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=6.9e-13 Score=104.67 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... . . .......+.+.|.+....+..+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 103 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG----TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV 103 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc----eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence 356789999999999999999999998765444 22221111100 0 0 0011123445555443322211110
Q ss_pred ----------------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE
Q 027090 91 ----------------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (228)
Q Consensus 91 ----------------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll 142 (228)
......+... +... +.-.....+|.|+++++.++.+++.+|. +++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---lll 176 (255)
T PRK11300 104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLE--HANRQAGNLAYGQQRRLEIARCMVTQPE---ILM 176 (255)
T ss_pred hhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--Chhh--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEE
Confidence 0011111100 1110 1111114799999999999999998884 666
Q ss_pred ---EEeCCCCCccchhhHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 143 ---VFTGGDDLEDHEKTLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 143 ---v~~~~D~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
|++.+|.... ..+.+.+.+. . +|+...+...|+..+++.++.+..
T Consensus 177 lDEPt~~LD~~~~--~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 177 LDEPAAGLNPKET--KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred EcCCccCCCHHHH--HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 9999999877 7777777543 1 789999999999999998887653
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.40 E-value=3.6e-12 Score=91.76 Aligned_cols=112 Identities=20% Similarity=0.069 Sum_probs=78.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
-+++..++|+|+||+|||||+++|+|...+.+| .+.. ++.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~----------~~~-------------------------- 62 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG----IVTW----------GST-------------------------- 62 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce----EEEE----------CCe--------------------------
Confidence 356679999999999999999999998653322 1111 110
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------C
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------P 166 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~ 166 (228)
..+-++. .+|.++++++.++++++.++ ++++ |++.+|.... ..+.+.+++.. +
T Consensus 63 ---------~~i~~~~----~lS~G~~~rv~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~til~~t 124 (144)
T cd03221 63 ---------VKIGYFE----QLSGGEKMRLALAKLLLENP---NLLLLDEPTNHLDLESI--EALEEALKEYPGTVILVS 124 (144)
T ss_pred ---------EEEEEEc----cCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--HHHHHHHHHcCCEEEEEE
Confidence 0011111 19999999999999999888 3555 8899998877 78877777543 5
Q ss_pred chHHHHHHhcCCeEEEeeC
Q 027090 167 KPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (228)
|....+...|+..+++.++
T Consensus 125 h~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 125 HDRYFLDQVATKIIELEDG 143 (144)
T ss_pred CCHHHHHHhCCEEEEEeCC
Confidence 6777776777766666544
No 305
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.39 E-value=1.6e-12 Score=102.70 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=100.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----------------eeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------------VLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~~~iDtpG~ 79 (228)
-.++.+++|+|+||+|||||+++|.|...+.+| .++........ ........++.+.|.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG----SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence 346789999999999999999999998765444 22222211100 0011223455566655
Q ss_pred CCCCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090 80 FDLSAGSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV-- 142 (228)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll-- 142 (228)
.......+++.. .....+... +....+ .-.....+|.|+++++.++++++.+|. +++
T Consensus 104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~-~~~~~~~LS~G~~qrv~laral~~~p~---llllD 177 (257)
T PRK10619 104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV--GIDERA-QGKYPVHLSGGQQQRVSIARALAMEPE---VLLFD 177 (257)
T ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCChhh-hhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEe
Confidence 543332222210 011111111 111111 011225799999999999999998884 666
Q ss_pred -EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 143 -VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 143 -v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
|++.+|.... ..+.+.+.... +|+...+...|++.+++.++.+..
T Consensus 178 EPt~~LD~~~~--~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 178 EPTSALDPELV--GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999998877 77777665542 789999888999998888887653
No 306
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.39 E-value=1.3e-12 Score=100.86 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=98.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK-- 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~-- 91 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+....+..+....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 100 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA 100 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHH
Confidence 356779999999999999999999998765444 22221111100 0011122455566665543332222100
Q ss_pred ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.+...+... +... ..-.....+|.|+++++.++++++.+|. +++ |++.+|.... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP~~~LD~~~~--~~ 171 (220)
T cd03263 101 RLKGLPKSEIKEEVELLLRVL--GLTD--KANKRARTLSGGMKRKLSLAIALIGGPS---VLLLDEPTSGLDPASR--RA 171 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CCHH--HHhChhhhCCHHHHHHHHHHHHHhcCCC---EEEECCCCCCCCHHHH--HH
Confidence 000111100 1110 0011114799999999999999998884 665 9999998877 77
Q ss_pred HHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+++.. +|....+.+.|+..+++.++.+.
T Consensus 172 l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 172 IWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 777776543 78888888889988888887654
No 307
>PLN03126 Elongation factor Tu; Provisional
Probab=99.39 E-value=1.7e-11 Score=104.18 Aligned_cols=140 Identities=15% Similarity=0.211 Sum_probs=88.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~ 80 (228)
..++..+++++|+.++|||||+++|++..... ........|.+....... .++..+.++||||..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHH
Confidence 35566889999999999999999998531100 011123344443333222 356678999999932
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~ 160 (228)
++...+......+|++++|+++..+....+++.+.++... +.+ ++++++||+|.... ++..+.
T Consensus 156 -----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~ 218 (478)
T PLN03126 156 -----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLEL 218 (478)
T ss_pred -----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHH
Confidence 2333333333477999999999877777777777766543 333 47889999998764 444333
Q ss_pred hhccCCchHHHHHHhc
Q 027090 161 LGHECPKPLKEILQLC 176 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~~ 176 (228)
+.. .+.+++..+
T Consensus 219 i~~----~i~~~l~~~ 230 (478)
T PLN03126 219 VEL----EVRELLSSY 230 (478)
T ss_pred HHH----HHHHHHHhc
Confidence 332 255555543
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.39 E-value=9.4e-13 Score=96.84 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=84.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
-.++..++|+|+||+|||||++.|.|...+..| .+. .++..+ ... . . .+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~----------~~g~~~-----~~~-~----~----~~~~~ 74 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EIL----------VDGKEV-----SFA-S----P----RDARR 74 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEE----------ECCEEC-----CcC-C----H----HHHHh
Confidence 456789999999999999999999998653322 111 111111 000 0 0 01000
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-------
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------- 165 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------- 165 (228)
..+-++.+ +|.++++++.++++++.+| ++++ |++.+|.... +.+.+.+++..
T Consensus 75 ---------~~i~~~~q----LS~G~~qrl~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~~~~tii 136 (163)
T cd03216 75 ---------AGIAMVYQ----LSVGERQMVEIARALARNA---RLLILDEPTAALTPAEV--ERLFKVIRRLRAQGVAVI 136 (163)
T ss_pred ---------cCeEEEEe----cCHHHHHHHHHHHHHhcCC---CEEEEECCCcCCCHHHH--HHHHHHHHHHHHCCCEEE
Confidence 11223333 9999999999999999888 4666 9999998877 77777776542
Q ss_pred --CchHHHHHHhcCCeEEEeeCCC
Q 027090 166 --PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|+...+.+.|+..+++.++.+
T Consensus 137 i~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 137 FISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEE
Confidence 6788888888888877776653
No 309
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.39 E-value=1.2e-12 Score=108.22 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-- 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-- 93 (228)
.++..++|+|+||||||||+++|.|...+.+| .+........ ..........+++.+.++...+..+++.-.+
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG----RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 45679999999999999999999998875444 2222221111 0001122344556666654433333221100
Q ss_pred --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
...+....+....--+.-.....+|+|+++++.++++++.+|. +++ |++.+|...+ ..+...++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~---llLLDEP~s~LD~~~r--~~l~~~L~ 188 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK---VLLLDESLSALDYKLR--KQMQNELK 188 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCcCCHHHH--HHHHHHHH
Confidence 0000000000010001111125799999999999999998884 666 9999998877 77777665
Q ss_pred ccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 163 HEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+. +|+..++...|+.++++.+|++..
T Consensus 189 ~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 532 799999999999999999987653
No 310
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.39 E-value=3.2e-13 Score=102.83 Aligned_cols=165 Identities=20% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.-+++..++++|++||||||++++|.+...+.+| .+.+...... ........-++++--|++.+.+..++. .
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G----~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI-a 97 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG----EILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI-A 97 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc----eEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH-H
Confidence 3456679999999999999999999988775554 3332221111 011122234777878877766544331 1
Q ss_pred HHHHHHhhc----cCCccEEE---------EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 92 EIVKCLGMA----KDGIHAFL---------VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 92 ~~~~~~~~~----~~~~~~il---------~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
-+-...... ..+++.++ |.-+....+|+|+++++-+++++..+| ++++ ||..+|...+ .
T Consensus 98 ~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP---~ilLMDEPFgALDpI~R--~ 172 (309)
T COG1125 98 TVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP---PILLMDEPFGALDPITR--K 172 (309)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC---CeEeecCCccccChhhH--H
Confidence 010110000 01112222 222333579999999999999998888 6888 9999999987 6
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
++.+.+.... +|++++..+..++++++..|.+..
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 6655544433 899999999999999998887653
No 311
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2e-12 Score=99.83 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe----eeeeCCcEEEEEeCC-----------
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTP----------- 77 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtp----------- 77 (228)
...-+++..++|+|+||||||||+++|.|...+.+|. +........ ..........+++.|
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~----v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~ 99 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE----VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED 99 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCE----EEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence 3445667899999999999999999999998866552 111111100 011112223444444
Q ss_pred ----CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCc
Q 027090 78 ----GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLE 151 (228)
Q Consensus 78 ----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~ 151 (228)
|........++..+....++... +.... .-.....+|+|+++++.++..+.-.|. -+++ |++.+|...
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~v--gl~~~--~~r~p~~LSGGqkqRvaIA~vLa~~P~--iliLDEPta~LD~~~ 173 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELV--GLEEL--LDRPPFNLSGGQKQRVAIAGVLAMGPE--ILLLDEPTAGLDPKG 173 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHc--Cchhh--ccCCccccCCcceeeHHhhHHHHcCCC--EEEEcCCCCCCCHHH
Confidence 22222222222222222222211 11111 122225799999999999999877774 2333 889999988
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. +++.+.+.++. +|+++.+...|+..+++.++.+..
T Consensus 174 ~--~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 174 R--RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred H--HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 7 88887776654 899999999999999999988743
No 312
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.39 E-value=1.5e-12 Score=100.55 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
-.++..++|+|+||||||||+++|.|...+..| .++........ . ........+.+.|.+....+..++..-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG----SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence 456789999999999999999999998764444 23322211100 0 001112344555554443222221100
Q ss_pred ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.....+... ..... ..-.....+|.|+++++.++++++.+| ++++ |++.+|.... ..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~-~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~~ 170 (222)
T cd03224 99 GAYARRRAKRKARLERVYELF-PRLKE--RRKQLAGTLSGGEQQMLAIARALMSRP---KLLLLDEPSEGLAPKIV--EE 170 (222)
T ss_pred HhhhcCchhHHHHHHHHHHHH-Hhhhh--hhhCchhhCCHHHHHHHHHHHHHhcCC---CEEEECCCcccCCHHHH--HH
Confidence 000011000 00000 001111469999999999999998888 4666 9999999877 77
Q ss_pred HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.. +|....+...|+..+++.++.+.
T Consensus 171 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 171 IFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 777776542 68888888999988888887754
No 313
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.39 E-value=1e-12 Score=101.66 Aligned_cols=158 Identities=17% Similarity=0.167 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK----- 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~----- 91 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+.......... .......+.+.+.+.......+...-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~ 98 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTRK-DLHKIGSLIESPPLYENLTARENLKVHTTLL 98 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecccc-ccccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence 46679999999999999999999998764444 222211110000 00112344455544432222222100
Q ss_pred -----HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 92 -----EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 92 -----~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
+....+... +.+. +.-.....+|.++++++.++.+++.+| ++++ |++.+|.... +.+.+.+.+
T Consensus 99 ~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~~rv~laral~~~p---~llllDEP~~~LD~~~~--~~l~~~L~~ 169 (223)
T TIGR03740 99 GLPDSRIDEVLNIV--DLTN--TGKKKAKQFSLGMKQRLGIAIALLNHP---KLLILDEPTNGLDPIGI--QELRELIRS 169 (223)
T ss_pred CCCHHHHHHHHHHc--CCcH--HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCccCCCHHHH--HHHHHHHHH
Confidence 000011000 1110 001111469999999999999999888 3665 9999998877 777776665
Q ss_pred cC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 164 EC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 164 ~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. +|+...+.+.|++.+.+.++.+.
T Consensus 170 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 170 FPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred HHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 42 78999888999998888887754
No 314
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=3e-12 Score=102.70 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=98.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCC--CCCCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTP--GLFDLSAG 85 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtp--G~~~~~~~ 85 (228)
.-.++.+++|+|+||+|||||+++|+|...+.+| .++....... ..........+.+.| .+... ..
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv 102 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG----KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TV 102 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc----EEEECCEECccccccccHHHHHhhEEEEecCcchhcccc-hH
Confidence 3456679999999999999999999998775544 2222221110 000111223455555 22221 11
Q ss_pred cHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 86 SEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 86 ~~~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
.+++ ...+...+... +...- +.-.....+|+++++++.++.+++.+|. ++| |++.+|
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~-~~~~~~~~LSgGqkqrvaiA~aL~~~p~---illLDEPt~gLD 176 (288)
T PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMV--GLADE-FWEKSPFELSGGQMRRVAIAGILAMEPE---VLVLDEPTAGLD 176 (288)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCChh-hccCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCccCCC
Confidence 1111 01111111111 11000 1112225799999999999999998884 555 899999
Q ss_pred CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.... ..+.+.+..+. +|++..+...|++++++.++.+..
T Consensus 177 ~~~~--~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 177 PKAR--IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 8877 77777665432 799999999999999998887643
No 315
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-12 Score=101.64 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+........ ........+.+.|.+.......+.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~--~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~ 97 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG----SITLDGKPVE--GPGAERGVVFQNEGLLPWRNVQDNVAFGLQL 97 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECC--CCCCcEEEEeCCCccCCCCcHHHHHHhHHHH
Confidence 456789999999999999999999998765444 2222111100 01111234455555543222222110
Q ss_pred ---------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 91 ---------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 91 ---------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
..+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrl~laral~~~p~---lllLDEPt~~LD~~~~--~~l~ 168 (255)
T PRK11248 98 AGVEKMQRLEIAHQMLKKV--GLEG--AEKRYIWQLSGGQRQRVGIARALAANPQ---LLLLDEPFGALDAFTR--EQMQ 168 (255)
T ss_pred cCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHH
Confidence 0011111111 1110 0111124799999999999999998883 655 9999998877 7777
Q ss_pred HHhhcc----C------CchHHHHHHhcCCeEEEee
Q 027090 159 DFLGHE----C------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 159 ~~~~~~----~------~~~~~~~~~~~~~~~~~~~ 184 (228)
+.+.+. . +|+...+...|+..+++.+
T Consensus 169 ~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 169 TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 776653 1 7999999999998888763
No 316
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4.6e-11 Score=86.59 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCC---CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAG---SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~-----~~~---~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
+-+|+|+|+-++||||++++++....+.. ... .++.|+...........+..+++++|||
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG------------ 77 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG------------ 77 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC------------
Confidence 46899999999999999999987763221 111 1123444444444544456799999999
Q ss_pred HHHHHHHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 91 KEIVKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 91 ~~~~~~~~-~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
++.++++. ...+++..++++++.+..........++.+..... . |+++..||.|+...
T Consensus 78 q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~--i--p~vVa~NK~DL~~a 136 (187)
T COG2229 78 QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP--I--PVVVAINKQDLFDA 136 (187)
T ss_pred cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC--C--CEEEEeeccccCCC
Confidence 45555544 44567888888888875666666677777765532 2 79999999999876
No 317
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.38 E-value=1.3e-12 Score=100.38 Aligned_cols=154 Identities=10% Similarity=0.060 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .++.................+.+.|++.......+...
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG----QIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL 109 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe----eEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence 346779999999999999999999998764444 22222111100001111234445565544322222110
Q ss_pred ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
+.....+... +... +.-.....+|.++++++.++++++.++. +++ |++.+|.... +.+.+.+
T Consensus 110 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l 180 (214)
T PRK13543 110 HGRRAKQMPGSALAIV--GLAG--YEDTLVRQLSAGQKKRLALARLWLSPAP---LWLLDEPYANLDLEGI--TLVNRMI 180 (214)
T ss_pred cCCcHHHHHHHHHHHc--CChh--hccCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHH
Confidence 0000111100 1100 0111114799999999999999998884 555 8899998877 7777777
Q ss_pred hccC---------CchHHHHHHhcCCeEEE
Q 027090 162 GHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 162 ~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
.+.. +|+..++.+.|++.+.+
T Consensus 181 ~~~~~~~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 181 SAHLRGGGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence 6421 56777777777665544
No 318
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.38 E-value=3.6e-12 Score=94.68 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=82.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
-+++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+... . . .+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t----v-~~ 94 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S----I-AE 94 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC----eEEECCEEcccCCHHHHHhheEEECCCCccccC-c----H-HH
Confidence 346679999999999999999999998764433 22221111100 0001111233333333221 0 0 10
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---- 165 (228)
. -+|.++++++.++++++.++. +++ |++.+|.... ..+.+.+....
T Consensus 95 ~----------------------lLS~G~~qrv~la~al~~~p~---~lllDEPt~~LD~~~~--~~l~~~l~~~~~~~~ 147 (173)
T cd03246 95 N----------------------ILSGGQRQRLGLARALYGNPR---ILVLDEPNSHLDVEGE--RALNQAIAALKAAGA 147 (173)
T ss_pred H----------------------CcCHHHHHHHHHHHHHhcCCC---EEEEECCccccCHHHH--HHHHHHHHHHHhCCC
Confidence 0 089999999999999998884 665 9999999877 77777766532
Q ss_pred -----CchHHHHHHhcCCeEEEeeCC
Q 027090 166 -----PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~ 186 (228)
+|+...+ ..|+..+++.++.
T Consensus 148 tii~~sh~~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 148 TRIVIAHRPETL-ASADRILVLEDGR 172 (173)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEECCC
Confidence 5666655 4677666665543
No 319
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.38 E-value=1.8e-12 Score=100.54 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------e-CCcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------K-DGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~-~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+........... . ......+.+.|.+.......+++
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l 109 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSG----EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV 109 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe----eEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence 46789999999999999999999998765444 2222111110000 0 01223445556554432222211
Q ss_pred H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
. +.+...+... +... +.-.....+|.|+++++.++++++.++. +++ |++.+|....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Ge~qrl~la~al~~~p~---llllDEPt~~LD~~~~ 182 (228)
T PRK10584 110 ELPALLRGESSRQSRNGAKALLEQL--GLGK--RLDHLPAQLSGGEQQRVALARAFNGRPD---VLFADEPTGNLDRQTG 182 (228)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH
Confidence 0 1111111111 1110 1111124799999999999999998884 555 9999998877
Q ss_pred chhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090 153 HEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 153 ~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
..+.+.+.+. . +|+...+ ..|+..+++.++.+
T Consensus 183 --~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~g~i 224 (228)
T PRK10584 183 --DKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQL 224 (228)
T ss_pred --HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEE
Confidence 7777777442 1 6777766 45877777766654
No 320
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-12 Score=106.80 Aligned_cols=164 Identities=11% Similarity=0.041 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-- 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-- 93 (228)
.++..++|+|+||||||||+++|.|...+..| .+........ ..........+.+.+.++...+..+++.-..
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAG----QIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999875544 2222221110 0001122345667777665544333321100
Q ss_pred --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
.............--+.-.....+|+++++++.+++++..+|. +++ |++.+|.... ..+...+.
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~---lLLLDEP~s~LD~~~r--~~l~~~l~ 193 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK---LLLLDEPMGALDKKLR--DRMQLEVV 193 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0000000011111111111124799999999999999998884 666 9999998766 66654433
Q ss_pred cc----C------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 163 HE----C------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 163 ~~----~------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+. . +|+..++...|++.+++.++++..
T Consensus 194 ~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 194 DILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 32 2 899999999999999998887643
No 321
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=2.5e-12 Score=98.83 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHHHH-
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFVGK- 91 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~~~- 91 (228)
..++|+|+||+|||||+++|+|...+.+| .+........ ..........+.+.+.+.......+...-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGG----TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG 99 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence 69999999999999999999998765444 2222111110 00011123455666665543322222110
Q ss_pred -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.+...+... +... ..-.....+|.|+++++.++++++.+|. +++ |++.+|.... +.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEPt~~LD~~~~--~~l 170 (214)
T cd03297 100 LKRKRNREDRISVDELLDLL--GLDH--LLNRYPAQLSGGEKQRVALARALAAQPE---LLLLDEPFSALDRALR--LQL 170 (214)
T ss_pred HhhCCHHHHHHHHHHHHHHc--CCHh--HhhcCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence 011111111 1110 0111124799999999999999998884 555 9999998877 777
Q ss_pred HHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCC
Q 027090 158 EDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 158 ~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.+.+.+. . +|+...+...|+..+++.++.+
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 171 LPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 7766542 1 7888888888988888877754
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.37 E-value=4.3e-12 Score=93.72 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCC
Q 027090 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (228)
Q Consensus 70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~ 147 (228)
.+.++||||+.+...... +.+.+++ +..|++++|+++...++..+...+........ ..+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~---~~~~~~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHT---EITEEYL----PKADVVIFVVDANQDLTESDMEFLKQMLDPDK----SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTS---HHHHHHH----STTEEEEEEEETTSTGGGHHHHHHHHHHTTTC----SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhH---HHHHHhh----ccCCEEEEEeccCcccchHHHHHHHHHhcCCC----CeEEEEEcCC
Confidence 479999999977433222 2223333 46699999999986666666555444433211 2488899985
No 323
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.37 E-value=2.5e-12 Score=100.98 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|...+. .....+.++........ .........+.+.|.+.. ....++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l 102 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI 102 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence 3567899999999999999999999987643 00002222222211100 000112234555565544 2222221
Q ss_pred H---------------HHHHHHHhhccCCccEE--EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 90 G---------------KEIVKCLGMAKDGIHAF--LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 ~---------------~~~~~~~~~~~~~~~~i--l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
. +.....+... +.... -..-.....+|.|+++++.+++++..+|. +++ |++.+|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~ 177 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE---VLLLDEPTSALDP 177 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHc--CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCH
Confidence 1 0001111110 11100 01112225799999999999999998884 555 8999998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.+.. +|....+...|+..+++.++.+.
T Consensus 178 ~~~--~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 178 IAT--GKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred HHH--HHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 877 77777666543 78999999999999898888764
No 324
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.37 E-value=3.2e-12 Score=98.18 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=97.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK-- 91 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-- 91 (228)
.-.++.+++|+|+||+|||||+++|+|...+.+| .+........ ..........+.+.|.++...+..++...
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~ 95 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG----SIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGL 95 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHh
Confidence 3346789999999999999999999998765444 2222111100 00011223455566665543222222210
Q ss_pred ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.+...+... +... +.-.....+|.++++++.++++++.+| ++++ |++.+|.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p---~llllDEPt~~LD~~~~--~~ 166 (213)
T TIGR01277 96 HPGLKLNAEQQEKVVDAAQQV--GIAD--YLDRLPEQLSGGQRQRVALARCLVRPN---PILLLDEPFSALDPLLR--EE 166 (213)
T ss_pred hccCCccHHHHHHHHHHHHHc--CcHH--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--HH
Confidence 011111110 1110 111112479999999999999998887 3665 9999998876 76
Q ss_pred HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.. +|....+.+.|+..+++.++.+.
T Consensus 167 ~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 167 MLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 666555431 68888888888888888777643
No 325
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.37 E-value=9.7e-12 Score=105.12 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=75.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-c----------------------------ccCCCCCcceeeEeEeeeee
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-K----------------------------ASAGSSGVTKTCEMKTTVLK 66 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~ 66 (228)
.++..+++++|+.++|||||+.+|+...-. . ........|.+....... .
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~ 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-T 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-c
Confidence 345578999999999999999988642100 0 000122344444433332 4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcccccc
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY 139 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------s~~~~~~l~~~~~~~~~~~~~~ 139 (228)
++..+.++||||.. ++...+......+|.+++|+++..+. ....++.+.++..+ +-+ +
T Consensus 83 ~~~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---Q 147 (446)
T ss_pred CCeEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---e
Confidence 56779999999932 33444444445789999999998554 24555555555443 433 5
Q ss_pred EEEEEeCCCC
Q 027090 140 MIVVFTGGDD 149 (228)
Q Consensus 140 ~llv~~~~D~ 149 (228)
+++++||+|.
T Consensus 148 iiv~vNKmD~ 157 (446)
T PTZ00141 148 MIVCINKMDD 157 (446)
T ss_pred EEEEEEcccc
Confidence 8889999994
No 326
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=2.4e-12 Score=100.81 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG-- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~-- 90 (228)
-.++..++|+|+||+|||||+++|+|...+..| .+......... .........+.+.|.+....+..+++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG----EIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence 356779999999999999999999998764444 22221111000 001112234555565554322222211
Q ss_pred ------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 91 ------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 91 ------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
......+... +...--+.-.....+|.|+++++.++++++.+| ++++ |++.+|.... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~ 172 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADP---PLLLMDEPFGALDPITR--D 172 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHHHH--H
Confidence 0011111110 111000111112479999999999999999888 4666 9999998876 6
Q ss_pred hHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 156 TLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 156 ~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.+.+... . +|...++...|+..+++.++.+..
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 766666543 1 789999999999999988887643
No 327
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.37 E-value=2.2e-12 Score=100.85 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.+.......++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 99 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG----DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVM 99 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHH
Confidence 346789999999999999999999998764444 22222111100 000111234455555443222211110
Q ss_pred ---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 ---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
+.+...+... +... +.-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKV--GLAE--RAHHYPSELSGGQQQRVAIARALAVKP---KLMLFDEPTSALDPELR 172 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHc--CChH--HHhcChhhcCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH
Confidence 0011111110 1110 111111479999999999999999888 4666 9999999877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+++.... +|+...+...|+..+++.++.+.
T Consensus 173 --~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 173 --HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 77777775442 78999998899999999888764
No 328
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.37 E-value=1.9e-11 Score=85.18 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G 98 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~-~ 98 (228)
..+|+|.+|+|||+|+-.+..... ++....++..+....+... .....++++||+| +|.++-+ .
T Consensus 10 kllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG------------qErFrtits 75 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG------------QERFRTITS 75 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeeccc------------HHHHHHHHH
Confidence 568999999999999998876644 3322222233333333321 2234589999999 5555544 4
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
..+++.|.+++|.|+++.-|... ++||+.+.+.+..- |-+||.||.|...+ +.+...- .+......+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv---~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~mg 143 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSV---PKVLVGNKNDDPER--RVVDTED-------ARAFALQMG 143 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccc---cceecccCCCCccc--eeeehHH-------HHHHHHhcC
Confidence 56789999999999998778776 46888888875433 78999999998876 4433211 111111111
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
-.....|++...++++-+..|.+.+-
T Consensus 144 ------ie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 144 ------IELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred ------chheehhhhhcccchHHHHHHHHHHH
Confidence 01223456666788887776655443
No 329
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.37 E-value=1.4e-12 Score=100.23 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=89.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC--CCCc-------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL--SAGS------- 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~--~~~~------- 86 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+........ ........+.+.|.+... .+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence 356779999999999999999999998765444 2221110000 001111222332222100 0000
Q ss_pred -----------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 87 -----------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 87 -----------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
....+.+...+... +... +.-.....+|.|+++++.+++++..+|. +++ |++.+|....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---llllDEPt~~LD~~~~ 168 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERV--GLSE--LADRQIGELSGGQQQRVLLARALVQDPD---LLLLDEPFAGVDPKTQ 168 (213)
T ss_pred ccccccccCCCHHHHHHHHHHHHHc--CCHH--HHhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH
Confidence 11111111222111 1110 0111124799999999999999998883 655 9999998877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+.+.+.+.. +|+...+.+.|+..+++.++
T Consensus 169 --~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 169 --EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred --HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 77777666532 68888888888877777554
No 330
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.8e-12 Score=99.74 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-.++.+++|+|+||+|||||++.|+|...+.+| .+......... ........++.+.|+++......+++.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASG----SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccc
Confidence 346679999999999999999999998765444 22221111000 000111234455555443222111110
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEP~~gLD~~~~--~~~ 168 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQM--GIED--LLARLPGQLSGGQRQRVALARCLVREQP---ILLLDEPFSALDPALR--QEM 168 (232)
T ss_pred cccCCCHHHHHHHHHHHHHc--CcHH--HHhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence 1111111111 1110 1111124799999999999999998883 555 8999998876 666
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.. +|....+.+.|++.+++.++.+.
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 66555421 68889888899988888888764
No 331
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.36 E-value=2.6e-12 Score=105.79 Aligned_cols=164 Identities=11% Similarity=0.067 Sum_probs=100.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--cCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.++..++|+|+||||||||+++|.|...+.+ | .+........ ..........+++.+.++...+..+++.--+
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G----~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l 104 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG----RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL 104 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE----EEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence 4567999999999999999999999877544 4 2222211110 0001122345667676665444333321000
Q ss_pred ----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090 94 ----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 94 ----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~ 160 (228)
........+....--+.-.....+|+++++++.++++++.+|. +++ |++.+|.... .++...
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~---llLLDEP~s~LD~~~r--~~l~~~ 179 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD---VLLLDEPLSALDANIR--ANMREE 179 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCccccCCHHHH--HHHHHH
Confidence 0000000000010001111125799999999999999998884 666 9999998876 666665
Q ss_pred hhcc-----C------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 161 LGHE-----C------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 161 ~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+++. . +|+..++...|++++++.++.+..
T Consensus 180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 5432 1 799999999999999998887643
No 332
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.36 E-value=3.9e-12 Score=101.08 Aligned_cols=164 Identities=14% Similarity=0.117 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.+.+....+..+++
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG----EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV 105 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence 345679999999999999999999998764444 22222111100 0 0011223455666655432222222
Q ss_pred HHHHHH-----------HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 90 GKEIVK-----------CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 90 ~~~~~~-----------~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
.-.... ...........--+.-.....+|+|+++++.++++++.+| ++++ |++.+|.... .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~~~--~ 180 (269)
T PRK11831 106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP---DLIMFDEPFVGQDPITM--G 180 (269)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--H
Confidence 100000 0000000011000001111479999999999999999888 3655 9999998877 7
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 7766665431 78999999999998888887654
No 333
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.36 E-value=4.4e-12 Score=104.78 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE--eeee---------eCCcEEEEEeCCCCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL---------KDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~---------~~~~~~~~iDtpG~~~~~~ 84 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+....... .... .......+++.++++...+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G----~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T 122 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG----SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT 122 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence 346679999999999999999999998775544 333322100 0000 0123356677777766444
Q ss_pred CcHHHHHHH----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 85 GSEFVGKEI----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 85 ~~~~~~~~~----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
..+++.-.. ........+....--+.-.....+|+++++++.+++++..+|. +++ |++.+|...
T Consensus 123 v~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~---ILLlDEPts~LD~~~ 199 (382)
T TIGR03415 123 VEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD---ILLMDEPFSALDPLI 199 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCccCCHHH
Confidence 333321100 0000000011111001111114699999999999999998884 666 999999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. .++.+.+.++. +|++.++.+.|++++++.++.+..
T Consensus 200 r--~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 200 R--TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 7 77776664431 799999999999999998887653
No 334
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.36 E-value=9.7e-13 Score=112.45 Aligned_cols=160 Identities=13% Similarity=-0.016 Sum_probs=101.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC-cEEEEEeCCCCCCCCCCcHHHHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
+..-..+.+|+|+|+||+|||||++.|.|...+.+|......+....++.+....- ..-+++|.---. .+.. ...
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~---~~~~-~e~ 417 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEG---FPDG-DEQ 417 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhh---Cccc-cHH
Confidence 34455678999999999999999999998877665543444445555544321000 001111110000 0000 013
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--- 165 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--- 165 (228)
++..++....-..+.+ .-.+ ..+|+|++.++.++..++.+| +++| |.|++|.... +.+++.+..+.
T Consensus 418 ~~r~~L~~f~F~~~~~--~~~v-~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~f~Gtv 489 (530)
T COG0488 418 EVRAYLGRFGFTGEDQ--EKPV-GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLDFEGTV 489 (530)
T ss_pred HHHHHHHHcCCChHHH--hCch-hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHhCCCeE
Confidence 3344443321111111 1122 479999999999999888777 5666 9999999988 99999999987
Q ss_pred ---CchHHHHHHhcCCeEEEee
Q 027090 166 ---PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~~~ 184 (228)
+|+..-+...|..++.+.+
T Consensus 490 l~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 490 LLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred EEEeCCHHHHHhhcceEEEEcC
Confidence 9999999999988777765
No 335
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.36 E-value=3.6e-12 Score=98.46 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=90.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee-----eC-CcEEEEEeCCCCCCCCCCcH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-----KD-GQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-----~~-~~~~~~iDtpG~~~~~~~~~ 87 (228)
.-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .. .. .....+.+.|.+.......+
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 102 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG----EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALE 102 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHH
Confidence 3356789999999999999999999998764444 22221111100 00 00 11234455555544322222
Q ss_pred HHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 88 FVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 88 ~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
... +.+...+... +.+. +.-.....+|.|+++++.++++++.+|. +++ |++.+|..
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---illlDEPt~~LD~~ 175 (221)
T TIGR02211 103 NVAMPLLIGKKSVKEAKERAYEMLEKV--GLEH--RINHRPSELSGGERQRVAIARALVNQPS---LVLADEPTGNLDNN 175 (221)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhCCCC---EEEEeCCCCcCCHH
Confidence 210 0011111110 1111 1111125799999999999999998883 666 89999988
Q ss_pred ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCC
Q 027090 151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
.. ..+.+.+... . +|+...+ ..|+..+++.++.
T Consensus 176 ~~--~~l~~~l~~~~~~~~~tii~~tH~~~~~-~~~d~v~~l~~G~ 218 (221)
T TIGR02211 176 NA--KIIFDLMLELNRELNTSFLVVTHDLELA-KKLDRVLEMKDGQ 218 (221)
T ss_pred HH--HHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEEEeCCE
Confidence 77 7777766542 1 6777765 4476666665554
No 336
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.5e-12 Score=102.05 Aligned_cols=160 Identities=10% Similarity=0.075 Sum_probs=94.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+++.......++.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG----EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 346789999999999999999999998764443 22221111000 00011122333433332221111111
Q ss_pred ---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 ---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.+.....+... +... +.-.....+|+|+++++.+++++..+| +++| |++.+|...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p---~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLV--GLKP--LAHRLVDSLSGGERQRAWIAMLVAQDS---RCLLLDEPTSALDIAH 182 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHc--CCHH--HhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHH
Confidence 01111111111 1110 111112479999999999999999888 4666 999999887
Q ss_pred cchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. +.+.+.+... . +|.+..+.+.|+..+++.++.+.
T Consensus 183 ~--~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 183 Q--VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 6 6666655443 1 78999999999999888888764
No 337
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.36 E-value=4.1e-12 Score=98.54 Aligned_cols=164 Identities=17% Similarity=0.143 Sum_probs=94.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCC--CCCCCCCc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPG--LFDLSAGS 86 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG--~~~~~~~~ 86 (228)
.-+++..++|+|+||+|||||++.|+|...+.+| .+......... . ........+.+.|. +....+..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~ 102 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG----SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIG 102 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHH
Confidence 3456789999999999999999999998765444 22222111100 0 01112234455552 22211111
Q ss_pred HHHHH-----------HHHHHH-hhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 87 EFVGK-----------EIVKCL-GMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 87 ~~~~~-----------~~~~~~-~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.+.. +..... .......... -+.-.....+|.|+++++.++++++.+| ++++ |++.+|..
T Consensus 103 ~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEPt~~LD~~ 179 (228)
T cd03257 103 EQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP---KLLIADEPTSALDVS 179 (228)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC---CEEEecCCCCCCCHH
Confidence 11100 000000 0000011110 0111112479999999999999999888 4666 99999988
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.. ..+.+.+.+.. +|+...+...|+..+++.++.+
T Consensus 180 ~~--~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 180 VQ--AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 (228)
T ss_pred HH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence 76 77776665431 6888888888888888877654
No 338
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.7e-12 Score=102.96 Aligned_cols=164 Identities=16% Similarity=0.045 Sum_probs=98.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAG 85 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~ 85 (228)
.-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. +.. .+.
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~-~tv 103 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG----TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE-NTV 103 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhceEEEEeChhhhhcc-chH
Confidence 3456789999999999999999999998775444 33332221100 001112234555552 221 111
Q ss_pred cHHHHH----------HHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 86 SEFVGK----------EIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 86 ~~~~~~----------~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.+.+.- +..............- -+.-.....+|.|+++++.++++++.+| ++++ |++.+|...
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p---~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 104 LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP---EILCLDEPAAGLDPEG 180 (287)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEECCCCCCCHHH
Confidence 221100 0000000000011110 0111112479999999999999999888 3655 999999887
Q ss_pred cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.++... +|++..+...|++.+++.++.+.
T Consensus 181 ~--~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 181 R--KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred H--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7 77777776542 79999999999999999888754
No 339
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.35 E-value=1.6e-12 Score=112.26 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFV-- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~-- 89 (228)
-+++.+++|+|+||||||||+++|.|...+.+| .+......... . . .......+.+.|.+.......+.+
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 109 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG----TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhc
Confidence 356679999999999999999999998765444 22221111000 0 0 001122444545443322221111
Q ss_pred --------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 90 --------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 90 --------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
.+.+...+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|.... .++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~aL~~~p~---lllLDEPt~~LD~~~~--~~l~ 180 (510)
T PRK15439 110 GLPKRQASMQKMKQLLAAL--GCQL--DLDSSAGSLEVADRQIVEILRGLMRDSR---ILILDEPTASLTPAET--ERLF 180 (510)
T ss_pred ccccchHHHHHHHHHHHHc--CCCc--cccCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCCCCCCHHHH--HHHH
Confidence 01111122111 1111 1111125799999999999999998884 665 9999999877 7887
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+++.. +|++..+...|+..+++.++.+.
T Consensus 181 ~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 181 SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7776542 79999999999999999888754
No 340
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.35 E-value=1.1e-11 Score=95.37 Aligned_cols=115 Identities=20% Similarity=0.314 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccc----c----------CCCCCcceeeEeEeeee---------eCCcEEEEEeC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTKTCEMKTTVL---------KDGQVVNVIDT 76 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~----~----------~~~~~~t~~~~~~~~~~---------~~~~~~~~iDt 76 (228)
++|+++|+.++|||||+.+|+...-... + ...+..|.......... .....+.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999975421000 0 00112332222111111 11456899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
||..+.. .+...+ ...+|++++|+|+..+.+..+...++.+... . .|+++++||+|..
T Consensus 81 PG~~~f~-------~~~~~~----l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-------SEVTAA----LRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCccccH-------HHHHHH----HHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 9966431 233333 3466999999999988888776666655432 2 2789999999975
No 341
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.35 E-value=2.1e-12 Score=100.14 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=95.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK-----AFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~-----~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~ 85 (228)
-.++..++|+|+||+|||||+++|+|.. .+.+| .+......... .........+.+.|.+. ..+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv 97 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG----EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSI 97 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe----EEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccH
Confidence 3567899999999999999999999987 54333 22221111000 00011122344444443 2221
Q ss_pred cHHHH---------------HHHHHHHhhccCCccEEEEEEeC--CCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090 86 SEFVG---------------KEIVKCLGMAKDGIHAFLVVFSV--TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT 145 (228)
Q Consensus 86 ~~~~~---------------~~~~~~~~~~~~~~~~il~v~~~--~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~ 145 (228)
.++.. +.+...+... +... ..... ...+|+|+++++.++.+++.+| ++++ |++
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~~~LSgG~~qrv~la~al~~~p---~llllDEPt~ 170 (227)
T cd03260 98 YDNVAYGLRLHGIKLKEELDERVEEALRKA--ALWD--EVKDRLHALGLSGGQQQRLCLARALANEP---EVLLLDEPTS 170 (227)
T ss_pred HHHHHhHHHhcCCCcHHHHHHHHHHHHHHc--CCCh--HHhccCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCc
Confidence 11110 1111111111 1111 11111 2479999999999999999887 4666 999
Q ss_pred CCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 146 GGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+|.... ..+.+.+.+.. +|+...+...|+..+++.++.+.
T Consensus 171 ~LD~~~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 171 ALDPIST--AKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHH--HHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999877 77777776543 68888888889988888887653
No 342
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=1.4e-12 Score=102.08 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEFV-- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~~-- 89 (228)
-.++.+++|+|+||+|||||+++|.|...+.+| .++........ .........+.+.|.+.......+++
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 101 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG----NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMA 101 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhh
Confidence 356789999999999999999999998765444 22222111000 00011122334444433321111111
Q ss_pred -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
.......+... +.... .-.....+|.|+++++.+++++..+| ++++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~- 173 (241)
T PRK10895 102 VLQIRDDLSAEQREDRANELMEEF--HIEHL--RDSMGQSLSGGERRRVEIARALAANP---KFILLDEPFAGVDPISV- 173 (241)
T ss_pred hhhcccccCHHHHHHHHHHHHHHc--CCHHH--hhcchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence 00111111111 11110 11112479999999999999998888 4666 9999998876
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.... +|....+...|+..+++.++.+.
T Consensus 174 -~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 174 -IDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216 (241)
T ss_pred -HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence 66665555432 78999999999998888888764
No 343
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.35 E-value=6.2e-12 Score=106.58 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=91.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC----------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---------- 85 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~---------- 85 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+....... .+...+++....+.
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG----eI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~ 112 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG----TVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLM 112 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce----EEEECCEee----------eEEeccccCCCCcHHHHHHhhhhh
Confidence 456789999999999999999999998765444 222211100 00001111111110
Q ss_pred ----cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 86 ----SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
.....+.....+... ++.. +.-.....+|+|+++++.++++++.+|. ++| |++.+|.... ..+.
T Consensus 113 ~~~~~~e~~e~i~elLe~l--gL~~--~ld~~~~~LSGGQrQRVaLArAL~~~P~---LLLLDEPTsgLD~~sr--~~Ll 183 (549)
T PRK13545 113 MGLTKEKIKEIIPEIIEFA--DIGK--FIYQPVKTYSSGMKSRLGFAISVHINPD---ILVIDEALSVGDQTFT--KKCL 183 (549)
T ss_pred cCCCHHHHHHHHHHHHHHc--CChh--HhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHHHH--HHHH
Confidence 111101111111111 1110 1111124799999999999999998884 555 9999998876 6777
Q ss_pred HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.... +|++..+...|+..+++.++.+.
T Consensus 184 elL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 184 DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 6665432 89999999999999988888754
No 344
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=7.1e-12 Score=100.46 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCC-CCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFD-LSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~-~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+.......... .......++.+.|...- ..+..+++
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 105 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG----KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI 105 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc----EEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHH
Confidence 356789999999999999999999998765444 222222111000 00112234445442111 11111111
Q ss_pred --------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 --------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 --------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+.+...+... +...--+.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~---llllDEPt~gLD~~~~ 180 (287)
T PRK13637 106 AFGPINLGLSEEEIENRVKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK---ILILDEPTAGLDPKGR 180 (287)
T ss_pred HhHHHHCCCCHHHHHHHHHHHHHHc--CCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCccCCCHHHH
Confidence 01111111111 1110001112225799999999999999998884 666 9999999877
Q ss_pred chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.++.+.++.+. +|++.++...|++++++.++.+..
T Consensus 181 --~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 181 --DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 77777665431 799999999999999998887643
No 345
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=9.4e-12 Score=94.75 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.++..++|+|+||+|||||++.|+|... +.+| .+......... .........+.+.+.+....+..+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G----~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l-- 104 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG----DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETL-- 104 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce----EEEECCEECccchhhhcceEEEEecccccCCCCcHHHHH--
Confidence 4667999999999999999999999865 3333 22222111100 00111223445555544332222221
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--- 165 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--- 165 (228)
...... . .-.....+|.++++++.++++++.+| ++++ |++.+|.... +.+.+.+.+..
T Consensus 105 ---~~~~~~----~----~~~~~~~LS~Ge~qrl~laral~~~p---~llllDEPt~~LD~~~~--~~~~~~l~~~~~~~ 168 (202)
T cd03233 105 ---DFALRC----K----GNEFVRGISGGERKRVSIAEALVSRA---SVLCWDNSTRGLDSSTA--LEILKCIRTMADVL 168 (202)
T ss_pred ---hhhhhh----c----cccchhhCCHHHHHHHHHHHHHhhCC---CEEEEcCCCccCCHHHH--HHHHHHHHHHHHhC
Confidence 111000 0 11111479999999999999999888 4555 8899998876 66666555421
Q ss_pred --------CchHHHHHHhcCCeEEEeeCCC
Q 027090 166 --------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 166 --------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|...++.+.|+..+++.++.+
T Consensus 169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i 198 (202)
T cd03233 169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198 (202)
T ss_pred CCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence 3445677777887777777654
No 346
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=5.4e-12 Score=95.32 Aligned_cols=141 Identities=16% Similarity=0.094 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.++..++|+|+||+|||||++.|.|... +..| .+........ .........+.+.|.+.......++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G----~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l----- 100 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG----EILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREAL----- 100 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce----EEEECCEehH-HHhhhceEEecccCccccCCcHHHHH-----
Confidence 4667999999999999999999999642 2222 2222211110 00111223445555554432222221
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------ 165 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------ 165 (228)
.+.... + .+|.++++++.++++++.+| ++++ |++.+|.... ..+.+.+++..
T Consensus 101 ~~~~~~----~----------~LSgGe~qrv~la~al~~~p---~vlllDEP~~~LD~~~~--~~l~~~l~~~~~~~~ti 161 (192)
T cd03232 101 RFSALL----R----------GLSVEQRKRLTIGVELAAKP---SILFLDEPTSGLDSQAA--YNIVRFLKKLADSGQAI 161 (192)
T ss_pred HHHHHH----h----------cCCHHHhHHHHHHHHHhcCC---cEEEEeCCCcCCCHHHH--HHHHHHHHHHHHcCCEE
Confidence 111000 0 79999999999999999888 4666 8899998877 77777666532
Q ss_pred ---CchHH-HHHHhcCCeEEEee-CC
Q 027090 166 ---PKPLK-EILQLCDNRCVLFD-NK 186 (228)
Q Consensus 166 ---~~~~~-~~~~~~~~~~~~~~-~~ 186 (228)
+|... .+...|++.+++.+ +.
T Consensus 162 iivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 162 LCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred EEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 56666 35667776666655 44
No 347
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=9.1e-13 Score=102.86 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=95.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.+.++...+..++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 103 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDPRATSG----RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc----eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence 356789999999999999999999998765444 22211111000 0 00111223344444333211111110
Q ss_pred -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
..+...+... +.... ........+|.|+++++.++++++.+| ++++ |++.+|.... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~-~~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~illlDEPt~~LD~~~~--~~ 175 (237)
T PRK11614 104 GGFFAERDQFQERIKWVYELF-PRLHE--RRIQRAGTMSGGEQQMLAIGRALMSQP---RLLLLDEPSLGLAPIII--QQ 175 (237)
T ss_pred hhhccChhHHHHHHHHHHHHH-HHHHH--HHhCchhhCCHHHHHHHHHHHHHHhCC---CEEEEcCccccCCHHHH--HH
Confidence 0011111100 00000 000111479999999999999999888 4665 9999998876 77
Q ss_pred HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.. +|+..++.+.|++.+++.++.+.
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 777665432 78999999999999999888764
No 348
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=92.47 Aligned_cols=162 Identities=22% Similarity=0.161 Sum_probs=103.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+++++|..|+|||+|...+.+... ...+..|+...+......++ ..+.++||+|. +++...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f----~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~-----------~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF----VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ-----------EEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc----ccccCCCccccceEEEEECCEEEEEEEEcCCCc-----------ccChHH
Confidence 46899999999999999999888776 44456666655444333333 34789999992 233333
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
........|++++|++.+++-|..+...+............-|+++|.||+|+... +.+...- -..+....
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~--R~V~~ee-------g~~la~~~ 138 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE--RQVSEEE-------GKALARSW 138 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc--cccCHHH-------HHHHHHhc
Confidence 34445567999999999989899887643332222222222489999999999763 3332110 11121111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. -+-+..||+...++++++..+.+.+..
T Consensus 139 ~------~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 139 G------CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred C------CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 1 012344666678999999888776665
No 349
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.34 E-value=2.5e-11 Score=93.57 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC---cc--------------------------cccCCCCCcceeeEeEeeeeeCCcEE
Q 027090 21 TVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTKTCEMKTTVLKDGQVV 71 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (228)
+|+++|+.++|||||+.+|+... .. .........|.+....... .++..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 58999999999999999985321 00 0001112334333333332 467789
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (228)
Q Consensus 72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~llv~ 144 (228)
.++||||..+ +...+......+|++++|+|+... ........+..+. ..+. +|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999422 122222233467999999999852 2223333333332 2232 3789999
Q ss_pred eCCCCC
Q 027090 145 TGGDDL 150 (228)
Q Consensus 145 ~~~D~~ 150 (228)
||+|..
T Consensus 145 NK~Dl~ 150 (219)
T cd01883 145 NKMDDV 150 (219)
T ss_pred Eccccc
Confidence 999987
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.34 E-value=7.3e-12 Score=92.93 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=79.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
-+++.+++|+|+||+|||||++.|+|...+.+| .+.. ++..+.++ |
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~----------~g~~i~~~--~------------------ 67 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD----NDEW----------DGITPVYK--P------------------ 67 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc----EEEE----------CCEEEEEE--c------------------
Confidence 356789999999999999999999998764333 2221 11111111 0
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc-----C--
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-----C-- 165 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-----~-- 165 (228)
... .+|.++++++.++++++.++. +++ |++.+|.... ..+.+.+.+. .
T Consensus 68 ----------------q~~-~LSgGq~qrv~laral~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~~~~~~~~ti 125 (177)
T cd03222 68 ----------------QYI-DLSGGELQRVAIAAALLRNAT---FYLFDEPSAYLDIEQR--LNAARAIRRLSEEGKKTA 125 (177)
T ss_pred ----------------ccC-CCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHHcCCCEE
Confidence 000 189999999999999988884 555 8899998766 6665555432 1
Q ss_pred ---CchHHHHHHhcCCeEEEeeC
Q 027090 166 ---PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~~~~ 185 (228)
+|....+...|+..+++.+.
T Consensus 126 iivsH~~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 126 LVVEHDLAVLDYLSDRIHVFEGE 148 (177)
T ss_pred EEEECCHHHHHHhCCEEEEEcCC
Confidence 78888888888877776544
No 351
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.34 E-value=4.1e-13 Score=104.33 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=98.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.+.++......+.. .
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l-~ 97 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG----SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENL-L 97 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHH-H
Confidence 356789999999999999999999998765444 23322211100 0 0011223455666655432222221 1
Q ss_pred HHHHHH--------hhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 92 EIVKCL--------GMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 92 ~~~~~~--------~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
...... .......+.+- ..-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---illlDEPt~~LD~~~~--~~l~~ 172 (230)
T TIGR03410 98 TGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK---LLLLDEPTEGIQPSII--KDIGR 172 (230)
T ss_pred HHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCcccCCHHHH--HHHHH
Confidence 000000 00000000000 0011114699999999999999998884 555 9999998877 77777
Q ss_pred Hhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCc
Q 027090 160 FLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 160 ~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+. . +|....+...|++.+++.++.+.
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 66543 1 78999988899999888888754
No 352
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=5.6e-12 Score=100.33 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=95.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCCC-CCCcHHH-
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFDL-SAGSEFV- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~~-~~~~~~~- 89 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+.......... ........+.+.|..... ....+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 100 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG----AVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA 100 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc----EEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence 45679999999999999999999998765444 222221111000 001112334444431111 1111110
Q ss_pred -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
.+.....+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrl~laraL~~~p~---lllLDEPt~~LD~~~~- 172 (271)
T PRK13638 101 FSLRNLGVPEAEITRRVDEALTLV--DAQH--FRHQPIQCLSHGQKKRVAIAGALVLQAR---YLLLDEPTAGLDPAGR- 172 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc--CCHh--HhcCCchhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence 00011111110 1110 0111124799999999999999998884 666 9999998877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+.+.. +|++..+...|+..+++.++.+..
T Consensus 173 -~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 173 -TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 77777766542 799999989999999998887643
No 353
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3.2e-12 Score=94.76 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
-.++..++|+|+||+|||||+++|+|...+..| .+......... .........+.+.|.+... ...+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~-----t~~e~ 95 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG----EILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-----TIREN 95 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC----EEEECCEEhhhcCHHHHHhhEEEEcCCchhccc-----hHHHH
Confidence 346679999999999999999999998764433 22221111000 0001112233333332211 00000
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---- 165 (228)
+ +|.++++++.++++++.+|. +++ |++.+|.... ..+.+.+.+..
T Consensus 96 l-----------------------LS~G~~~rl~la~al~~~p~---llllDEP~~gLD~~~~--~~l~~~l~~~~~~~t 147 (171)
T cd03228 96 I-----------------------LSGGQRQRIAIARALLRDPP---ILILDEATSALDPETE--ALILEALRALAKGKT 147 (171)
T ss_pred h-----------------------hCHHHHHHHHHHHHHhcCCC---EEEEECCCcCCCHHHH--HHHHHHHHHhcCCCE
Confidence 0 89999999999999988884 555 9999998877 77777776532
Q ss_pred ----CchHHHHHHhcCCeEEEee
Q 027090 166 ----PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 166 ----~~~~~~~~~~~~~~~~~~~ 184 (228)
+|+...+.. |+..+.+.+
T Consensus 148 ii~~sh~~~~~~~-~d~~~~l~~ 169 (171)
T cd03228 148 VIVIAHRLSTIRD-ADRIIVLDD 169 (171)
T ss_pred EEEEecCHHHHHh-CCEEEEEcC
Confidence 566666654 665555544
No 354
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.34 E-value=5.4e-11 Score=106.00 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc---ccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 79 (228)
..+-++|+|+|+.++|||||+++|+...-.. .... ....|.+...... .+++..+.++||||.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~-~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV-FWKGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE-EECCeEEEEEECCCC
Confidence 3445799999999999999999996422100 0011 1234444433333 356778999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+.. .+.... ...+|++++|+|+..+....+...+..+... . .|+++++||+|....
T Consensus 86 ~~~~-------~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFT-------VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY---E--VPRIAFVNKMDKTGA 142 (689)
T ss_pred cchh-------HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence 6532 222333 3355999999999877777766666554432 2 278899999998754
No 355
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.8e-11 Score=99.72 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..|.++|+--.|||||+..|=+.++... ..+.+|.....+..... ....+.++|||| ++-+..|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPG------------HeAFt~m 71 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPG------------HEAFTAM 71 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCc------------HHHHHHH
Confidence 4899999999999999999987776322 34567777777776644 346799999999 4444333
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..-..-.|++++++++++++-..+..-+..+++. .. |+++..||+|.....+..+...+.+ + .-..+..
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~v--P~iVAiNKiDk~~~np~~v~~el~~---~--gl~~E~~ 141 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---GV--PIVVAINKIDKPEANPDKVKQELQE---Y--GLVPEEW 141 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---CC--CEEEEEecccCCCCCHHHHHHHHHH---c--CCCHhhc
Confidence 3445567999999999989988888888887765 33 7999999999986533334333333 1 0011111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
++. -..++.||.++.++++|++.+.-...
T Consensus 142 gg~----v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 142 GGD----VIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CCc----eEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 111 12356799999999999987754433
No 356
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=7.9e-12 Score=97.26 Aligned_cols=161 Identities=17% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-- 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-- 93 (228)
.++.+++|+|+||+|||||+++|+|...+..| .++........ .........+.+.|.++......++.....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~ 99 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG----EILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL 99 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence 46789999999999999999999999775444 22222211100 001122234455566554322222211000
Q ss_pred --------HHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090 94 --------VKCLGMAKD--GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 94 --------~~~~~~~~~--~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~ 160 (228)
...+..... +.+.. .-.....+|.++++++.++++++.+|. +++ |++.+|.... ..+.+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~lS~G~~qrl~laral~~~p~---llllDEP~~gLD~~~~--~~l~~~ 172 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEGY--ANRKPSQLSGGQQQRVAIARALVNEPK---VLLLDEPLGALDLKLR--KDMQLE 172 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchh--hcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHH
Confidence 000000000 11111 111114799999999999999999884 555 9999998877 777766
Q ss_pred hhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 161 LGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 161 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.. +|...++.+.|++.+++.++.+.
T Consensus 173 l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 65431 68888888899999888888754
No 357
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4.6e-12 Score=99.15 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=107.9
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCC
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~ 84 (228)
+.+-.-+++.+++|+|.+|+|||||++++.+...|.+| .+..+...... .......-.+++-+++....+
T Consensus 24 ~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG----~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG----SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred cceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc----eEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 34445567889999999999999999999999886665 33322211110 001122345666666665443
Q ss_pred CcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090 85 GSEF--------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG 147 (228)
Q Consensus 85 ~~~~--------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~ 147 (228)
..++ ..+.....+... +.. =..-.....+|+|++|++.+++++..+|. +++ +.+.+
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelV--gL~--dk~~~yP~qLSGGQKQRVaIARALa~~P~---iLL~DEaTSAL 172 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELV--GLS--DKADRYPAQLSGGQKQRVAIARALANNPK---ILLCDEATSAL 172 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHc--CCh--hhhccCchhcCcchhhHHHHHHHHhcCCC---EEEecCccccC
Confidence 3322 111222222111 000 00011114699999999999999988884 666 78999
Q ss_pred CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
|+... +.+.+.+++.. +|.++-+-+.|++..++..|.+...
T Consensus 173 DP~TT--~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 173 DPETT--QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred ChHHH--HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99877 77777776643 8999999999999999999986543
No 358
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.33 E-value=5.8e-12 Score=99.21 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----------------eeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------------VLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~~~iDtpG~ 79 (228)
-.++.+++|+|+||+|||||++.|+|...+.+| .+......... .........+.+.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEG----QIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 356779999999999999999999998765444 22222111100 0011223455566665
Q ss_pred CCCCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090 80 FDLSAGSEFVG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV-- 142 (228)
Q Consensus 80 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll-- 142 (228)
....+..+++. ..+...+... +.+. +.-.....+|.++++++.++++++.+|. +++
T Consensus 99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllD 171 (252)
T TIGR03005 99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV--GLAD--KADHMPAQLSGGQQQRVAIARALAMRPK---VMLFD 171 (252)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChh--HhhcChhhcCHHHHHHHHHHHHHHcCCC---EEEEe
Confidence 54322222211 0011111111 1111 1111225799999999999999998884 555
Q ss_pred -EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 143 -VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 143 -v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
|++.+|.... ..+.+.+.+. . +|+...+...|++.+++.++.+.
T Consensus 172 EP~~~LD~~~~--~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 172 EVTSALDPELV--GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred CCcccCCHHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999998876 6776666542 1 78999988899999998888764
No 359
>PRK00007 elongation factor G; Reviewed
Probab=99.33 E-value=4.5e-11 Score=106.48 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh---CCCcccccC-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 79 (228)
...-++|+|+|+.++|||||+++|+ |.......+ .....|.+...... .+.+..+.++||||.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~-~~~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-EECCeEEEEEeCCCc
Confidence 3445799999999999999999996 332110001 12334444433333 356778999999995
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+. ..+... +...+|++++|+|+..+....+...+..+... + .|.++++||+|....
T Consensus 86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 431 123333 33456999999999888888887777766543 2 268899999998754
No 360
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.33 E-value=1.1e-11 Score=96.74 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-eeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-LKDGQVVNVIDTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-~~~~~~~~~iDtpG~~~~~~~~~~~~--- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... . ........+.+.|.+.......+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 99 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG----QISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA 99 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHH
Confidence 346789999999999999999999998765544 22221111000 0 00011234444454432222222110
Q ss_pred -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
+.....+... +... ..-.....+|.|+++++.++++++.+|. +++ |++.+|.... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~ 170 (236)
T TIGR03864 100 ALHGLSRAEARERIAALLARL--GLAE--RADDKVRELNGGHRRRVEIARALLHRPA---LLLLDEPTVGLDPASR--AA 170 (236)
T ss_pred HhcCCCHHHHHHHHHHHHHHc--CChh--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCccCCCHHHH--HH
Confidence 0001111100 1110 0111114799999999999999998884 666 9999999877 77
Q ss_pred HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.+.+.. +|....+. .|+..+++.++.+..
T Consensus 171 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 171 IVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred HHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEE
Confidence 777665431 68888875 488888888887643
No 361
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.33 E-value=4.2e-12 Score=97.44 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=88.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
-+++..++|+|+||+|||||++.|+|...+.+| .+. ... ..+.+-..+.+.......+.. ....
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG----~i~~~~~----------~~~~~~~~~~l~~~ltv~enl-~~~~ 74 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG----DFIGLRG----------DALPLGANSFILPGLTGEENA-RMMA 74 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC----CEEEecC----------ceeccccccccCCcCcHHHHH-HHHH
Confidence 345679999999999999999999998765444 222 111 011111123332222111111 1111
Q ss_pred HHHhhc----------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 95 KCLGMA----------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 95 ~~~~~~----------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
...... ..+.+. ..-.....+|.++++++.++++++.+| ++++ |++.+|.... ..+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~lS~G~~qrv~la~al~~~p---~llllDEP~~~lD~~~~--~~~~~~l 147 (213)
T PRK15177 75 SLYGLDGDEFSHFCYQLTQLEQ--CYTDRVSEYSVTMKTHLAFAINLLLPC---RLYIADGKLYTGDNATQ--LRMQAAL 147 (213)
T ss_pred HHcCCCHHHHHHHHHHHhChhH--HhhchHhhcCHHHHHHHHHHHHHhcCC---CEEEECCCCccCCHHHH--HHHHHHH
Confidence 100000 000000 000111479999999999999999888 4655 7888887665 5555544
Q ss_pred hc-c--C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 162 GH-E--C-----PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 162 ~~-~--~-----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.. . . +|.+..+.+.|+..+++.++.+..
T Consensus 148 ~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~ 183 (213)
T PRK15177 148 ACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM 183 (213)
T ss_pred HHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence 21 1 1 789999889999999998887653
No 362
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.33 E-value=9.1e-11 Score=90.88 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=52.1
Q ss_pred cEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090 69 QVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~ 145 (228)
..+.++||||+...... .....+.+...+..+.. ..+.+++++++...++..+. ++++..+- +..+++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~--l~ia~~ld--~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA--LKLAKEVD--PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH--HHHHHHHH--HcCCcEEEEEE
Confidence 45899999999754211 12232334444444433 34688999998766666553 23333321 12247999999
Q ss_pred CCCCCccchhhHHHHhhc
Q 027090 146 GGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~ 163 (228)
|+|...+. .++.+.++.
T Consensus 201 K~D~~~~~-~~~~~~~~~ 217 (240)
T smart00053 201 KLDLMDEG-TDARDILEN 217 (240)
T ss_pred CCCCCCcc-HHHHHHHhC
Confidence 99988652 334444443
No 363
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.33 E-value=2e-11 Score=82.73 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
++++++|+.|+|||||+++|-|... ....++..+ +++ -..+||||.+-. .+.+..++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKTQAve--------~~d--~~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKTQAVE--------FND--KGDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh----hhcccceee--------ccC--ccccCCchhhhh-------hhHHHHHHHH
Confidence 6899999999999999999998765 222222211 111 137899995532 2455555666
Q ss_pred ccCCccEEEEEEeCCC---CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 100 AKDGIHAFLVVFSVTN---RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~---~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+++++++..+.. +++.+- .....+++|-++||.|+.+. +.+....+ .+..+
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f-----------~~~~~k~vIgvVTK~DLaed--~dI~~~~~---------~L~ea 118 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGF-----------LDIGVKKVIGVVTKADLAED--ADISLVKR---------WLREA 118 (148)
T ss_pred HhhccceeeeeecccCccccCCccc-----------ccccccceEEEEecccccch--HhHHHHHH---------HHHHc
Confidence 6678899999988873 343321 11222368889999999865 55554333 23333
Q ss_pred CCe-EEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 177 DNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
... ++..+. -...++++|++++...
T Consensus 119 Ga~~IF~~s~------~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 119 GAEPIFETSA------VDNQGVEELVDYLASL 144 (148)
T ss_pred CCcceEEEec------cCcccHHHHHHHHHhh
Confidence 322 222222 2347889998887643
No 364
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.33 E-value=2.3e-12 Score=111.09 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF--- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~--- 88 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.|.+....+..+.
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 102 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG----SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL 102 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence 346789999999999999999999998765444 22221111000 0001112233444433222111111
Q ss_pred ---------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 ---------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ---------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
..+.....+... +... ..-.....+|+|+++++.++++++.+|. ++| |++.+|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~~ 175 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARL--NLRF--SSDKLVGELSIGEQQMVEIAKVLSFESK---VIIMDEPTDALTDT 175 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHc--CCCC--CccCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcCCCCHH
Confidence 001111122111 1111 1111124799999999999999998884 555 99999998
Q ss_pred ccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. .++.+.+.+.. +|++..+...|++.+++.++.+.
T Consensus 176 ~~--~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 176 ET--ESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HH--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 77 77776665532 89999999999999999888753
No 365
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=5.2e-12 Score=99.67 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|.|+++++.++++++.+| +++| |++.+|.... ..+.+.+.... +|.+..+.+.|+..+++
T Consensus 137 ~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~~~--~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDT---PVVLLDEPTTYLDINHQ--VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 579999999999999999888 4666 9999998877 77777665432 78999999999999999
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 212 ~~G~i~ 217 (255)
T PRK11231 212 ANGHVM 217 (255)
T ss_pred ECCeEE
Confidence 888764
No 366
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=2.7e-10 Score=88.09 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..++..|+|+|++|+|||||+|+|.+...... ......+ ..........+.++||||.. .....
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-~~~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-ISDIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-ccccccc-----EEEEecCCceEEEEeCCchH----------HHHHH
Confidence 45568999999999999999999987632111 1111111 11122356678999999832 22222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
. ...+|++++++|+.......+...+..+... +.+ .+++++||+|....
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCCc
Confidence 2 2456999999999877777777766666543 222 24559999998743
No 367
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.32 E-value=3.3e-12 Score=103.29 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=99.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE-EEEEeCCCCCCCCCCcHH---
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAGSEF--- 88 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~iDtpG~~~~~~~~~~--- 88 (228)
+..-.++..+.++||+||||||++++|.|-..+.+| .+..............++ -.+++..-++.+.+..++
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G----~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVaf 100 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG----EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF 100 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhh
Confidence 344566789999999999999999999999886555 333332222111122222 223333222222222221
Q ss_pred ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
..+....++... ..-=+--.....+|+++++++.+++++...|. ++| |+..+|..-+
T Consensus 101 GLk~~~~~~~~~i~~rv~e~L~lV----~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~---vLLLDEPlSaLD~kLR- 172 (352)
T COG3842 101 GLKVRKKLKKAEIKARVEEALELV----GLEGFADRKPHQLSGGQQQRVALARALVPEPK---VLLLDEPLSALDAKLR- 172 (352)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHc----CchhhhhhChhhhChHHHHHHHHHHHhhcCcc---hhhhcCcccchhHHHH-
Confidence 112222222211 10012222225799999999999999987773 555 8999997544
Q ss_pred hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.++...+++.. +|+..+.+..++++.++.+|++...
T Consensus 173 -~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~ 218 (352)
T COG3842 173 -EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV 218 (352)
T ss_pred -HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec
Confidence 44444443322 8999999999999999999987543
No 368
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=7.4e-12 Score=98.68 Aligned_cols=169 Identities=13% Similarity=0.041 Sum_probs=99.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.. ....+.++....... . .........+.+.|.+....+..++.
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV 106 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence 45678999999999999999999999865320 011223332221110 0 00112234455666655433222222
Q ss_pred HHH------------HHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 90 GKE------------IVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 90 ~~~------------~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
... ....+.......+. .+ ..-.....+|.++++++.++++++.+| ++++ |++.+|..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~ 183 (253)
T PRK14267 107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKP---KILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHH
Confidence 100 00000000011110 00 011112579999999999999999888 4666 99999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.. ..+.+.+++.. +|....+...|++++++.++.+..
T Consensus 184 ~~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 184 GT--AKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HH--HHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 77 77777776543 689999889999998988887643
No 369
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=7e-12 Score=97.62 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=91.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee-----e-CCcEEEEEeCCCCCCCCCCcH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-----K-DGQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-----~-~~~~~~~iDtpG~~~~~~~~~ 87 (228)
.-.++..++|+|+||+|||||+++|+|...+.+| .++........ .. . .....++.+.|.++...+..+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 106 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG----DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE 106 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHH
Confidence 3456779999999999999999999998764444 22222111100 00 0 011234455555443322222
Q ss_pred HHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 88 FVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 88 ~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
++. +.....+... +.... .-.....+|.|+++++.+++++..+|. +++ |++.+|..
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LSgG~~qrl~la~al~~~p~---lllLDEPt~~LD~~ 179 (233)
T PRK11629 107 NVAMPLLIGKKKPAEINSRALEMLAAV--GLEHR--ANHRPSELSGGERQRVAIARALVNNPR---LVLADEPTGNLDAR 179 (233)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchh--hhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHH
Confidence 210 0111111111 11111 111114799999999999999998884 655 99999988
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.. ..+.+.+++.. +|+...+.. ++..+++.++.+
T Consensus 180 ~~--~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i 223 (233)
T PRK11629 180 NA--DSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRL 223 (233)
T ss_pred HH--HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEE
Confidence 77 77777666531 678877665 456666666654
No 370
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.32 E-value=6.8e-12 Score=99.88 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+| ++++ |++.+|.... ..+.+.+.+.. +|+...+...|+..++.
T Consensus 141 ~~LSgG~~qrv~laraL~~~p---~llllDEPt~~LD~~~~--~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 141 GELSGGQKKRVFLARAIAQQG---QVILLDEPFTGVDVKTE--ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred ccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 479999999999999999888 4666 9999998877 77777776542 78999998889876554
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
++.+.
T Consensus 216 -~G~i~ 220 (272)
T PRK15056 216 -KGTVL 220 (272)
T ss_pred -CCEEE
Confidence 66654
No 371
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.1e-11 Score=100.64 Aligned_cols=161 Identities=15% Similarity=0.100 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------------------eeeCCcEEEEEeC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------------------VLKDGQVVNVIDT 76 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~~~~iDt 76 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .++........ .........+.+.
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G----~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG----TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----eEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 356789999999999999999999999775544 22222111000 0011122345555
Q ss_pred CC--CCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccE
Q 027090 77 PG--LFDLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (228)
Q Consensus 77 pG--~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ 140 (228)
|. +... +..+++ .+.....+... +... -+.-.....+|+|+++++.++++++.+|. +
T Consensus 125 ~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~-~~~~~~~~~LSgGqkqRvaiAraL~~~p~---i 197 (320)
T PRK13631 125 PEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKM--GLDD-SYLERSPFGLSGGQKRRVAIAGILAIQPE---I 197 (320)
T ss_pred chhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHc--CCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCC---E
Confidence 52 2221 111111 01111111111 1110 01111224799999999999999998884 6
Q ss_pred EE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 141 IV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 141 ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+| |++.+|.... ..+.+.+.... +|++..+.+.|++++++.++.+..
T Consensus 198 LLLDEPtsgLD~~~~--~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 198 LIFDEPTAGLDPKGE--HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred EEEECCccCCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 66 8999998877 77777665431 799999999999999998887653
No 372
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.32 E-value=7e-12 Score=97.86 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI- 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~- 93 (228)
-.++.+++|+|+||+|||||++.|+|...+..| .++........ .........+.+.|.++...+..++.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG----RIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLE 98 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHH
Confidence 346779999999999999999999998664433 22222111100 001122345555666554322222211000
Q ss_pred ---------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 94 ---------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 94 ---------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
.............--+.-.....+|.++++++.+++++..+|. +++ |++.+|.... ..+.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~~~~~l 173 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ---VLLLDEPFGALDAKVR--KELRSWL 173 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHH
Confidence 0000000001111000111114799999999999999998883 555 9999998877 7777777
Q ss_pred hcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 162 GHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 162 ~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+. . +|...++...|++.+++.++.+..
T Consensus 174 ~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 653 1 788888889999999988887653
No 373
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.32 E-value=5e-12 Score=100.30 Aligned_cols=161 Identities=13% Similarity=0.038 Sum_probs=95.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-.++.+++|+|+||+|||||+++|+|...+..| .+......... ........++.+.|.+.......+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG----HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc----EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 346779999999999999999999998764444 22221111000 00001122334444332211111100
Q ss_pred ---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 ---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.......+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~gLD~~~ 178 (265)
T PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQAT--GITH--LADQSVDTLSGGQRQRAWIAMVLAQETA---IMLLDEPTTWLDISH 178 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHc--CCHH--HhcCCcccCChHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHH
Confidence 01111111111 1111 1111225799999999999999998884 555 999999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+.+.. +|++..+...|++.+++.++.+..
T Consensus 179 ~--~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 179 Q--IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6 77766665431 789999999999999998887643
No 374
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.32 E-value=9.9e-12 Score=97.35 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=87.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH---
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--- 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--- 93 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+..... ....+.+.+......+..+.+ ...
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G----~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l-~~~~~~ 88 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEG----DIEIELD---------TVSYKPQYIKADYEGTVRDLL-SSITKD 88 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC----eEEECCc---------eEEEecccccCCCCCCHHHHH-HHHhhh
Confidence 46789999999999999999999998765544 2221110 111122222211111111111 000
Q ss_pred --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
...+... +.+. ..-.....+|+|+++++.++++++.++. +++ |++.+|.... ..+.+.++
T Consensus 89 ~~~~~~~~~~~l~~l--~l~~--~~~~~~~~LSgGe~qrv~iaraL~~~p~---llllDEPt~~LD~~~~--~~l~~~l~ 159 (246)
T cd03237 89 FYTHPYFKTEIAKPL--QIEQ--ILDREVPELSGGELQRVAIAACLSKDAD---IYLLDEPSAYLDVEQR--LMASKVIR 159 (246)
T ss_pred ccccHHHHHHHHHHc--CCHH--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0001000 1110 0111124799999999999999998884 555 9999998877 77776665
Q ss_pred ccC----------CchHHHHHHhcCCeEEEee
Q 027090 163 HEC----------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 163 ~~~----------~~~~~~~~~~~~~~~~~~~ 184 (228)
+.. +|++..+...|+..+++..
T Consensus 160 ~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 160 RFAENNEKTAFVVEHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 531 7888888888998777643
No 375
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=9.5e-12 Score=100.40 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++.+++.+|. ++| |++.+|.... ..+.+.+.... +|++..+.+.|++++++
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~---lLlLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPD---FLVFDEPTAGLDPQGV--KEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 5799999999999999998884 555 9999998877 77777665432 79999999999999999
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 239 ~~G~i~ 244 (305)
T PRK13651 239 KDGKII 244 (305)
T ss_pred ECCEEE
Confidence 888754
No 376
>PRK12739 elongation factor G; Reviewed
Probab=99.32 E-value=5e-11 Score=106.22 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc--ccc-C-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KAS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~ 80 (228)
..-++|+|+|+.++|||||+++|+...-. ..+ + .....|.+....... +++..+.++||||..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence 34578999999999999999999642110 000 0 123445444444333 567789999999954
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+ ...+... +...+|++++|+|+..+....+...+..+... + +|.++++||+|....
T Consensus 85 ~-------f~~e~~~----al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------FTIEVER----SLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 3 1123333 33456999999999878877777766665432 2 268899999998754
No 377
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.32 E-value=4.1e-12 Score=96.62 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=92.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-.++..++|+|+||+|||||++.|.|.. .+..| .+......... . ........+.+.|.+......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--- 94 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN--- 94 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc----EEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH---
Confidence 33567799999999999999999999983 33333 22222211100 0 001112344555544322111
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC 165 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~ 165 (228)
.+.. -.....+|.++++++.++++++.+| ++++ |++.+|.... ..+.+.+.+..
T Consensus 95 --~~~l----------------~~~~~~LS~G~~qrv~laral~~~p---~illlDEPt~~LD~~~~--~~l~~~L~~~~ 151 (200)
T cd03217 95 --ADFL----------------RYVNEGFSGGEKKRNEILQLLLLEP---DLAILDEPDSGLDIDAL--RLVAEVINKLR 151 (200)
T ss_pred --HHHH----------------hhccccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHH
Confidence 1111 0111379999999999999999888 4666 8999998876 77777665432
Q ss_pred ---------CchHHHHHH-hcCCeEEEeeCCCcc
Q 027090 166 ---------PKPLKEILQ-LCDNRCVLFDNKTKD 189 (228)
Q Consensus 166 ---------~~~~~~~~~-~~~~~~~~~~~~~~~ 189 (228)
+|....+.. .|+..+++.++.+..
T Consensus 152 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 688887766 689888888887543
No 378
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.31 E-value=1.3e-11 Score=97.44 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--eeCCcEEEEEeCCCCCCCCCCcHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--LKDGQVVNVIDTPGLFDLSAGSEFVG-- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~~~~~~~~~iDtpG~~~~~~~~~~~~-- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+..| .+......... . ........+.+.|.+.......+.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG----TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence 356789999999999999999999998764444 22222111100 0 00111223344443222111111110
Q ss_pred ----------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 91 ----------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 91 ----------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+.+...+... +... +.-.....+|.++++++.+++++..+|. +++ |++.+|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~ 172 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALART--ELSH--LADRDMSTLSGGERQRVHVARALAQEPK---LLLLDEPTNHLDVRA 172 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCccccCCHHH
Confidence 0111111111 1110 1111124799999999999999998884 555 999999887
Q ss_pred cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+.+.. +|.+..+.+.|+..+++.++.+..
T Consensus 173 ~--~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 173 Q--LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred H--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 6 77777666542 789999999999999998887653
No 379
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=1.2e-12 Score=98.89 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=103.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSE 87 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~ 87 (228)
..-+++...+|+|++|+|||||+++|.|...|..|. +-......... ....+--.+++--.+++.....+
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge----I~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~e 104 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE----ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFE 104 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe----EEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhH
Confidence 344667899999999999999999999998866652 11111110000 00111123344333333332222
Q ss_pred H--------------HHHHHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 88 F--------------VGKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 88 ~--------------~~~~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
+ ..+++.. ++...-+.... ...+. ..+|+|++++..+++++.-+|. +++ |++.+|+
T Consensus 105 NVafplre~~~lp~~~i~~lv~-~KL~~VGL~~~~~~~~P--sELSGGM~KRvaLARAialdPe---ll~~DEPtsGLDP 178 (263)
T COG1127 105 NVAFPLREHTKLPESLIRELVL-MKLELVGLRGAAADLYP--SELSGGMRKRVALARAIALDPE---LLFLDEPTSGLDP 178 (263)
T ss_pred hhheehHhhccCCHHHHHHHHH-HHHHhcCCChhhhhhCc--hhhcchHHHHHHHHHHHhcCCC---EEEecCCCCCCCc
Confidence 2 2222211 11111111111 11222 4799999999999999988884 666 9999999
Q ss_pred CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
... ..+.+.+..+. +|++..+...|++.+++.++++...
T Consensus 179 I~a--~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 179 ISA--GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred chH--HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 987 77777777655 8999999999999999999987654
No 380
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.31 E-value=6.8e-12 Score=99.38 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--------eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--------VLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--------~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.++.+++|+|+||+|||||+++|+|...+..+ ..+.+......... .........+.+.+.++...+..+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLITGDKS-AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-CceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 46789999999999999999999998653221 01122221111100 0001112344555554432221111
Q ss_pred HH----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090 89 VG----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V 143 (228)
Q Consensus 89 ~~----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v 143 (228)
+. .....++... +... +.-.....+|.++++++.++++++.+|. ++| |
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP 179 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVH--FAHQRVSTLSGGQQQRVAIARALMQQAK---VILADEP 179 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHH--HHhCCccccCHHHHHHHHHHHHHhcCCC---EEEecCc
Confidence 10 0111111111 1110 1111125799999999999999998884 666 9
Q ss_pred EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
++.+|.... ..+.+.+++.. +|+...+...|++++++.++.+.
T Consensus 180 t~~LD~~~~--~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 180 IASLDPESA--RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999877 77777776542 68999999999999988888764
No 381
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.31 E-value=1.5e-11 Score=95.06 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC-C-CC----------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD-L-SA---------- 84 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~-~-~~---------- 84 (228)
+++.+++|+|+||+|||||+++|+|...+.+| .+....... ........++.+.|.+.. . ..
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKG----TVKVAGASP--GKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCccc--hHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 45789999999999999999999998764444 222221110 000111223334333210 0 00
Q ss_pred --------CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 85 --------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 85 --------~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
......+.+...+... +... +.-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llilDEP~~~LD~~~~- 149 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRV--GLTE--LADRPVGELSGGQRQRVLVARALATRPS---VLLLDEPFTGLDMPTQ- 149 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHh--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH-
Confidence 0000001112222211 1111 1111224799999999999999998884 666 9999999877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+.. +|+...+...|+..+++ ++.+.
T Consensus 150 -~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 150 -ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred -HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 77777776542 78999998899988776 66654
No 382
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.4e-11 Score=96.88 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.. .+..+.+........ ..........+.+.|.+....+..++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 105 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVAL 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHH
Confidence 34677999999999999999999999864210 011112222111100 0001112234556665443322222211
Q ss_pred ---------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 91 ---------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.+...+... +.+..+ ..-.....+|+|+++++.++++++.+|. +++ |++.+|..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---lllLDEP~~~LD~~ 180 (250)
T PRK14247 106 GLKLNRLVKSKKELQERVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE---VLLADEPTANLDPE 180 (250)
T ss_pred HHHhccccCCHHHHHHHHHHHHHHc--CCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHH
Confidence 0011111110 111000 0111125799999999999999998874 555 99999998
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+.+.. +|....+.+.|+..+++.++.+.
T Consensus 181 ~~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 181 NT--AKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred HH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 77 77777776543 78999888999988888888764
No 383
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1e-10 Score=97.65 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~-~ 98 (228)
..|-|||+-..|||||+.+|-+..+...+ .+++|.-...+.+...++..+++.|||| ..-+..| .
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPG------------HaAF~aMRa 219 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPG------------HAAFSAMRA 219 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCc------------HHHHHHHHh
Confidence 58999999999999999999877763333 3467777777777767888999999999 4434444 3
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.-+.-.|.+++|+.++++.-..+.+.++.+.+. .. |+++.+||+|.... ..+...+++.++.+ ..+...+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a---~pekv~~eL~~~gi--~~E~~GG 289 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGA---NPEKVKRELLSQGI--VVEDLGG 289 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCC---CHHHHHHHHHHcCc--cHHHcCC
Confidence 456678999999999988888887776666553 33 89999999998754 33333332111111 1111111
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
-. -.++.||.+++|++.|.+.+.-.
T Consensus 290 dV----QvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 290 DV----QVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred ce----eEEEeecccCCChHHHHHHHHHH
Confidence 11 12567888999999998876433
No 384
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.31 E-value=7.3e-12 Score=98.12 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-.++..++|+|+||+|||||+++|+|.. .+.+| .+......... . . .......+.+.|.+.......+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~ 97 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG----TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEF 97 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc----eEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHH
Confidence 34567899999999999999999999984 33333 22222111100 0 0 00111234455554432221111
Q ss_pred HH---------------------HHHHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090 89 VG---------------------KEIVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIV---V 143 (228)
Q Consensus 89 ~~---------------------~~~~~~~~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~ll---v 143 (228)
.. +.+...+... +...- +.-.... .+|.|+++++.++++++.+|. +++ |
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEP 171 (243)
T TIGR01978 98 LRSALNARRSARGEEPLDLLDFLKLLKAKLALL--GMDEE-FLNRSVNEGFSGGEKKRNEILQMALLEPK---LAILDEI 171 (243)
T ss_pred HHHHHHHhhcccccccccHHHHHHHHHHHHHHc--CCchh-hcccccccCcCHHHHHHHHHHHHHhcCCC---EEEecCC
Confidence 10 0011111110 11100 0111112 499999999999999998884 555 9
Q ss_pred EeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeEEEeeCCCc
Q 027090 144 FTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRCVLFDNKTK 188 (228)
Q Consensus 144 ~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~ 188 (228)
++.+|.... ..+.+.+.+.. +|+...+... |+..+++.++.+.
T Consensus 172 t~~LD~~~~--~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 172 DSGLDIDAL--KIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred cccCCHHHH--HHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 999999877 78877776542 7888888887 7888888877654
No 385
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.31 E-value=9.8e-12 Score=96.19 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|.++++++.++++++.+|. +++ |++.+|.... ..+.+.+.... +|+..++...|++.+++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~---llllDEP~~gLD~~~~--~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPD---ILLIDEVLAVGDAAFQ--EKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4799999999999999998884 555 9999998766 66666655432 68888888888888777
Q ss_pred eeCCC
Q 027090 183 FDNKT 187 (228)
Q Consensus 183 ~~~~~ 187 (228)
.++.+
T Consensus 216 ~~G~i 220 (224)
T cd03220 216 EKGKI 220 (224)
T ss_pred ECCEE
Confidence 77654
No 386
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.4e-11 Score=98.98 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAGS 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~~ 86 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... ........++.+.|. +... +..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~ 104 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG----TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE-TVE 104 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh-hHH
Confidence 356779999999999999999999998765444 23222211100 000112234555542 2221 111
Q ss_pred HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
+++. +.....+... +.+..+ .-.....+|.++++++.++.+++.+|. ++| |++.+|.
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~-~~~~~~~LSgGq~qrv~lAraL~~~P~---llllDEPt~~LD~ 178 (290)
T PRK13634 105 KDICFGPMNFGVSEEDAKQKAREMIELV--GLPEEL-LARSPFELSGGQMRRVAIAGVLAMEPE---VLVLDEPTAGLDP 178 (290)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCChhh-hhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCH
Confidence 1110 0011111111 111000 111124799999999999999998884 655 8999998
Q ss_pred CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.++... +|++..+.+.|++.+++.++.+.
T Consensus 179 ~~~--~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 179 KGR--KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 876 77766665431 78999999999999998888754
No 387
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=6.3e-11 Score=101.94 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC--Cccccc-CC-----------------CCCcceeeEeEeeeeeCCcEEEEEeC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKAS-AG-----------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~-~~-----------------~~~~t~~~~~~~~~~~~~~~~~~iDt 76 (228)
...++++|+|+.++|||||+++|+-. .....+ +. ....+........ .+++..+.++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEEEEEC
Confidence 34579999999999999999998521 110011 00 0122222222222 256778999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
||..+. ..+...+ ...+|++++|+++..++.......++.+.. . . .|+++++||+|....
T Consensus 88 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~-~--~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-------SEDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL--R-D--TPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-------HHHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh--c-C--CCEEEEEECccccCC
Confidence 996432 1222233 346699999999987666666665554432 1 2 379999999998643
No 388
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.31 E-value=7.5e-11 Score=95.26 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=52.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeee-----------------------eCCcEEEEEeCC
Q 027090 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVL-----------------------KDGQVVNVIDTP 77 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~-----------------------~~~~~~~~iDtp 77 (228)
|+|+|.+++|||||+|+|++... .+.+++.|+ +........ .....+.++|||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~---~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV---EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC---cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 58999999999999999998764 222333333 222111110 122468999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (228)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (228)
|+.............+... .+.+|++++|+++.
T Consensus 78 Glv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~ 110 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS 110 (318)
T ss_pred CCCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 9865433222222333333 34669999999986
No 389
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.31 E-value=1.1e-11 Score=95.98 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=92.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
-.++.+++|+|+||+|||||++.|+|... +.+| .+..................+.+.+.+....+..+++. .
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~-~ 104 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG----QILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLT-Y 104 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce----EEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHH-H
Confidence 35678999999999999999999999865 3333 22221111100011122234445555543322222211 0
Q ss_pred HHHHH--------------hh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 93 IVKCL--------------GM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 93 ~~~~~--------------~~-~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
..... .. ..+..+.--+.-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~---illlDEP~~gLD~~~~-- 179 (226)
T cd03234 105 TAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK---VLILDEPTSGLDSFTA-- 179 (226)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC---EEEEeCCCcCCCHHHH--
Confidence 00000 00 0000010000111114799999999999999998884 555 8999998876
Q ss_pred hhHHHHhhccC---------CchH-HHHHHhcCCeEEEeeCCC
Q 027090 155 KTLEDFLGHEC---------PKPL-KEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 155 ~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 187 (228)
..+.+.+.+.. +|.. .++.+.|+..+++.++.+
T Consensus 180 ~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 180 LNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 77777665432 5776 578888888888777654
No 390
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.2e-11 Score=98.23 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCc------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGS------ 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~------ 86 (228)
+++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. +.......
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG----EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 56789999999999999999999998765444 22222111100 000111223444442 11111100
Q ss_pred --------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 87 --------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 87 --------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
..........+... +... +.-.....+|.|+++++.++++++.+|. ++| |++.+|.... .
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---lllLDEPt~~LD~~~~--~ 179 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQV--DMLE--RADYEPNALSGGQKQRVAIAGVLALNPS---VIILDEATSMLDPDAR--Q 179 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHc--CCch--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence 11101111111111 1110 1111225799999999999999998884 666 9999998877 7
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.+.+.+.. +|....+.. |++.+++.++.+..
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~ 222 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK 222 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence 7777666431 677777764 88888888887643
No 391
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=9.3e-12 Score=99.35 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSEFV- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~~~- 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. +... +..+++
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~~~l~ 101 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG----SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIA 101 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHhheEEEecCcccccccc-cHHHHHH
Confidence 356789999999999999999999998765544 22221111100 000111223333331 1111 111111
Q ss_pred -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
.+.+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrl~laraL~~~p~---llilDEPt~gLD~~~~- 173 (277)
T PRK13652 102 FGPINLGLDEETVAHRVSSALHML--GLEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQ---VLVLDEPTAGLDPQGV- 173 (277)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHC--CChh--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence 00111111110 1110 1111125799999999999999999884 665 8999998877
Q ss_pred hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+++.. +|.+.++.+.|++.+++.++.+..
T Consensus 174 -~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 174 -KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 77776665421 789999999999999988887643
No 392
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.1e-12 Score=109.30 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCc------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGS------ 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~------ 86 (228)
.++.+++|+|+||||||||+++|+|...+.+| .+......... .........+.+.|.+....+..
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSG----SILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCce----EEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence 56679999999999999999999998765444 22211110000 00001112233333222111110
Q ss_pred -----------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 87 -----------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 87 -----------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
....+.....+... +.+. ..-.....+|+|+++++.++++++.+|. ++| |++.+|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qrv~lA~al~~~p~---lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 98 RYPTKGMFVDQDKMYRDTKAIFDEL--DIDI--DPRAKVATLSVSQMQMIEIAKAFSYNAK---IVIMDEPTSSLTEKEV 170 (491)
T ss_pred cccccccccCHHHHHHHHHHHHHHc--CCCC--CccCchhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH
Confidence 11001111222211 1111 1111124799999999999999998884 555 9999999877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.++.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 171 --~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 171 --NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred --HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 88877776542 89999999999999999888754
No 393
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.8e-11 Score=98.16 Aligned_cols=159 Identities=17% Similarity=0.108 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-------eeCCcEEEEEeCC--CCCCCCCCcH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-------LKDGQVVNVIDTP--GLFDLSAGSE 87 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~~~iDtp--G~~~~~~~~~ 87 (228)
.++..++|+|+||||||||+++|+|...+..| .+..+....... ........+.+.| .+... ...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~e 105 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPTTG----TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED-TVER 105 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhheEEEecChHhccchh-hHHH
Confidence 46679999999999999999999998765444 232222111000 0011223445544 22211 1111
Q ss_pred HH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 88 FV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 88 ~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
++ .+....++... +... -+.-.....+|+|+++++.++.+++.+|. +++ |++.+|..
T Consensus 106 ~i~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~-~~~~~~~~~LSgGq~qrv~laraL~~~p~---illlDEPt~~LD~~ 179 (286)
T PRK13646 106 EIIFGPKNFKMNLDEVKNYAHRLLMDL--GFSR-DVMSQSPFQMSGGQMRKIAIVSILAMNPD---IIVLDEPTAGLDPQ 179 (286)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHc--CCCh-hhhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHH
Confidence 11 01111111110 1110 00011124799999999999999998884 555 99999998
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.++.+. +|++..+...|++.+++.++.+.
T Consensus 180 ~~--~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 180 SK--RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred HH--HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 77 78777776531 78999998999998888887754
No 394
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.30 E-value=9e-12 Score=98.91 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=96.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSE 87 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~ 87 (228)
+..-+++.+++|+|+||+|||||+++|+|...+.+| .++........ .........+.+.|. +.......+
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 108 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQ 108 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHH
Confidence 344456789999999999999999999999775554 22222111100 000111233444442 111100000
Q ss_pred ---------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 88 ---------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 88 ---------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
...+++...+... +++.- +.-.....+|.|+++++.++++++.+| +++| |++.+|.
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEPt~~LD~ 182 (267)
T PRK15112 109 ILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPD-HASYYPHMLAPGQKQRLGLARALILRP---KVIIADEALASLDM 182 (267)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHc--CCChH-HHhcCchhcCHHHHHHHHHHHHHHhCC---CEEEEcCCcccCCH
Confidence 0001111111111 11000 000111479999999999999999888 4666 9999998
Q ss_pred CccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.+. . +|....+...|++.+++.++.+.
T Consensus 183 ~~~--~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 183 SMR--SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHH--HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 876 7777666553 1 78999998889998888887654
No 395
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=8.7e-12 Score=99.78 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=95.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCC-CCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLF-DLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~-~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+.......... .......++.+.|... ...+..+++.
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G----~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 105 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSG----RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS 105 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc----EEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHH
Confidence 46779999999999999999999998764444 333222211000 0111223445554211 1111111110
Q ss_pred --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+.....+... +... +.-.....+|.|+++++.+++++..+| ++++ |++.+|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrl~laraL~~~p---~lLilDEPt~gLD~~~~- 177 (283)
T PRK13636 106 FGAVNLKLPEDEVRKRVDNALKRT--GIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEP---KVLVLDEPTAGLDPMGV- 177 (283)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHC--CChh--hhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEeCCccCCCHHHH-
Confidence 0011111111 1110 111112579999999999999999888 4665 9999998876
Q ss_pred hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.... +|++..+...|++.+++.++.+.
T Consensus 178 -~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 178 -SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred -HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 66666554431 79999998899999988888754
No 396
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.30 E-value=1.3e-11 Score=97.93 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=96.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------eCCcEEEEEeCCC--CCCCCCCc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------KDGQVVNVIDTPG--LFDLSAGS 86 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~iDtpG--~~~~~~~~ 86 (228)
.-+++.+++|+|+||+|||||+++|+|...+.+| .++.......... .......+.+.|. +.......
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 108 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG----TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVR 108 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHH
Confidence 3456789999999999999999999998765444 2332221111000 0112234455542 22211111
Q ss_pred HHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 87 EFVG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 87 ~~~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
+.+. +.....+... +.+.. +.-.....+|.|+++++.++++++.+|. +++ |++.+|
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~-~~~~~~~~LSgGe~qrv~laral~~~p~---illLDEPt~~LD 182 (265)
T TIGR02769 109 QIIGEPLRHLTSLDESEQKARIAELLDMV--GLRSE-DADKLPRQLSGGQLQRINIARALAVKPK---LIVLDEAVSNLD 182 (265)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCC
Confidence 1110 0111111111 11100 0111124799999999999999998884 555 999999
Q ss_pred CCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 149 DLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.... ..+.+.+.+. . +|++..+...|+..+++.++.+.
T Consensus 183 ~~~~--~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 183 MVLQ--AVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 8766 6666655543 1 78999998899999888887654
No 397
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.5e-12 Score=110.22 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSE---- 87 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~---- 87 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.|.+.......+
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG----TITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI 103 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc----EEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence 356789999999999999999999998765444 22211110000 0 00011122333333222111111
Q ss_pred -----------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090 88 -----------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG 147 (228)
Q Consensus 88 -----------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~ 147 (228)
.....+...+... ++.. ..-.....+|+|+++++.++++++.+|. ++| |++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~---lllLDEPt~~L 176 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRV--GLKV--DLDEKVANLSISHKQMLEIAKTLMLDAK---VIIMDEPTSSL 176 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHc--CCCC--CcccchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCC
Confidence 0111111222111 1110 1111124799999999999999998884 666 99999
Q ss_pred CCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 148 DDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 148 D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
|.... ..+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 177 D~~~~--~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 177 TNKEV--DYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred CHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 99877 78777766542 89999999999999998888753
No 398
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.30 E-value=1.2e-11 Score=96.39 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEE-eCCCCCCCCCCcHHHH---
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVI-DTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~i-DtpG~~~~~~~~~~~~--- 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+. +.+.+.......+...
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~ 120 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHH
Confidence 46679999999999999999999998765444 22221111000 00011112233 3344432221111110
Q ss_pred -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
+.+...+... +.+.. .-.....+|.++++++.++.+++.+|. +++ |++.+|.... +.
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~ 191 (236)
T cd03267 121 AIYDLPPARFKKRLDELSELL--DLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPE---ILFLDEPTIGLDVVAQ--EN 191 (236)
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CChhH--hcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCCCCCCHHHH--HH
Confidence 0000111100 11100 001114799999999999999998884 655 9999999877 78
Q ss_pred HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090 157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+.+.+.+.. +|....+...|+..+++.++.+
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 232 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 887776541 6888888888888888877654
No 399
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.30 E-value=5.7e-12 Score=121.25 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.+.+.+..+..+.+ ...
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG----~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L-~l~ 2036 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG----DATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHL-YLY 2036 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHH-HHH
Confidence 356789999999999999999999999875554 22222111100 00111223456666666544333322 111
Q ss_pred HHHHh-----------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 94 VKCLG-----------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 94 ~~~~~-----------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
..... ...+..+.--+.-.....+|+|+++++.++.+++++|. +++ |++.+|...+ +.+++
T Consensus 2037 a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~---VLLLDEPTsGLDp~sr--~~l~~ 2111 (2272)
T TIGR01257 2037 ARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP---LVLLDEPTTGMDPQAR--RMLWN 2111 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCCCCCHHHH--HHHHH
Confidence 11000 00000110001111125799999999999999999884 666 9999999988 88888
Q ss_pred HhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.. +|++.++...|++.+++.+|++.
T Consensus 2112 lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2112 TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 776642 89999999999999998887643
No 400
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.3e-12 Score=100.12 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSEFVG 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~~~~ 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. +.. .+..+++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~l~ 102 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG----RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS-STVWDDVA 102 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce----EEEECCEECCCCCHHHHHhhEEEEecChhhhhcc-CcHHHHHH
Confidence 356789999999999999999999998765444 22222211100 000111234444442 221 11111110
Q ss_pred --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+.+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgG~~qrv~laraL~~~p~---llllDEPt~~LD~~~~- 174 (274)
T PRK13647 103 FGPVNMGLDKDEVERRVEEALKAV--RMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPD---VIVLDEPMAYLDPRGQ- 174 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHC--CCHH--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCCcCCCHHHH-
Confidence 1111111110 1111 1111125799999999999999999884 555 9999999877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.++.+.+.... +|++..+.+.|++.+++.++.+.
T Consensus 175 -~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 175 -ETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 77777776542 79999998999999999888754
No 401
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.30 E-value=3.2e-11 Score=88.98 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+.... ......+.+.|.+.. .+ . .+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~~--------~~~i~~~~q~~~~~~-~t----v-~~nl~ 85 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG----RIGMPE--------GEDLLFLPQRPYLPL-GT----L-REQLI 85 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECC--------CceEEEECCCCcccc-cc----H-HHHhh
Confidence 356789999999999999999999998764433 222111 011223334343321 11 1 11111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------C
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------P 166 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~ 166 (228)
. . ....+|.++++++.++++++.+| ++++ |++.+|.... ..+.+.+.+.. +
T Consensus 86 ~---~------------~~~~LS~G~~~rv~laral~~~p---~~lllDEPt~~LD~~~~--~~l~~~l~~~~~tiiivs 145 (166)
T cd03223 86 Y---P------------WDDVLSGGEQQRLAFARLLLHKP---KFVFLDEATSALDEESE--DRLYQLLKELGITVISVG 145 (166)
T ss_pred c---c------------CCCCCCHHHHHHHHHHHHHHcCC---CEEEEECCccccCHHHH--HHHHHHHHHhCCEEEEEe
Confidence 0 0 12489999999999999999888 4555 8999998877 77777776632 4
Q ss_pred chHHHHHHhcCCeEEEe
Q 027090 167 KPLKEILQLCDNRCVLF 183 (228)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (228)
|+... ...|++.+.+.
T Consensus 146 h~~~~-~~~~d~i~~l~ 161 (166)
T cd03223 146 HRPSL-WKFHDRVLDLD 161 (166)
T ss_pred CChhH-HhhCCEEEEEc
Confidence 55543 34566555443
No 402
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.4e-12 Score=96.90 Aligned_cols=169 Identities=13% Similarity=0.130 Sum_probs=101.2
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeC---------CcEEEEEeCCCCC
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD---------GQVVNVIDTPGLF 80 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~---------~~~~~~iDtpG~~ 80 (228)
....-+++.+.+++||+|||||||+++|..-.....+ ...+.. ......+. .+.-.+++-|.-+
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~-----~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG-----ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcC-----ceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 3444566789999999999999999998765432111 111111 11111111 1224667777644
Q ss_pred CCCCCcHH---------HHHHHHHHHhhccCCccEEEEE---E-eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090 81 DLSAGSEF---------VGKEIVKCLGMAKDGIHAFLVV---F-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF 144 (228)
Q Consensus 81 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~il~v---~-~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~ 144 (228)
..+--+.- ..+++-..++.+.+.+...=.| + +..-++|+|++|+|=+++++.-+|. ++| |.
T Consensus 101 p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe---VlLmDEPt 177 (253)
T COG1117 101 PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE---VLLMDEPT 177 (253)
T ss_pred CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc---EEEecCcc
Confidence 32100000 0011111121111111111111 1 2224799999999999999977774 666 88
Q ss_pred eCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 145 TGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 145 ~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
+.+|+... ..+++.+.+++ +|.+++..+.++..+++..|.+...
T Consensus 178 SALDPIsT--~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 178 SALDPIST--LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred cccCchhH--HHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 99999988 88888887766 8999999999999988888876543
No 403
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=9.4e-11 Score=81.68 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
.++.|+|.+.+|||||+-..++.... ...-.+..++....++-. .+...++++||.|.. .+.....
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt--~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrtiTT 88 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTITT 88 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccc--cceeeeeeeeEEEeEeeecccEEEEEEEecccch-----------hhhHHHH
Confidence 48999999999999999999988652 122223333343333221 223458999999922 1233334
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
..+++++++++++|.++.-|..-.+ |.-.+....-. +-+++|+.||||.... +.+.... -..+.+..+
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e--Rvis~e~-------g~~l~~~LG 157 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE--RVISHER-------GRQLADQLG 157 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc--eeeeHHH-------HHHHHHHhC
Confidence 5568899999999998666665544 43334333222 2389999999998765 4433211 112222221
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
- .-...+++.+-+++++++++...+-+
T Consensus 158 f------efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 158 F------EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred h------HHhhhcccccccHHHHHHHHHHHHHH
Confidence 1 11233555567777777776665544
No 404
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.8e-12 Score=112.38 Aligned_cols=155 Identities=17% Similarity=0.084 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH-------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF------- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~------- 88 (228)
-.++.+++|+|+||||||||+++|+|...+.+|. +..... ..+....+... +.+.........
T Consensus 335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~----i~~~~~-~~igy~~Q~~~-----~~l~~~~~~~~~~~~~~~~ 404 (638)
T PRK10636 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE----IGLAKG-IKLGYFAQHQL-----EFLRADESPLQHLARLAPQ 404 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe----EEECCC-EEEEEecCcch-----hhCCccchHHHHHHHhCch
Confidence 3567899999999999999999999987655542 221100 00010111000 000000000000
Q ss_pred -HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090 89 -VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~ 164 (228)
....+...+... ++..- ........+|+|+++++.++..++.++ +++| |+|++|.... ..+.+++..+
T Consensus 405 ~~~~~~~~~L~~~--~l~~~-~~~~~~~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l~~~L~~~ 476 (638)
T PRK10636 405 ELEQKLRDYLGGF--GFQGD-KVTEETRRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QALTEALIDF 476 (638)
T ss_pred hhHHHHHHHHHHc--CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHHc
Confidence 001111111111 11000 011111479999999999999998877 4666 9999999988 8999988876
Q ss_pred C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 165 C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 165 ~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. +|+...+...|+.++++.++.+.
T Consensus 477 ~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 477 EGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 5 89999999999999988887753
No 405
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.29 E-value=1e-11 Score=96.49 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=93.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCC--CCCCCCCcHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPG--LFDLSAGSEFV---- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG--~~~~~~~~~~~---- 89 (228)
+++.+++|+|+||+|||||+++|+|...+...+..+.+......... .........+.+.|. +.......+..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 89 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL 89 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence 46679999999999999999999998764100012222222111100 000112234445543 22211111111
Q ss_pred ----------HHHHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 90 ----------GKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 90 ----------~~~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
.+.+...+... +.+.. -+.-.....+|.|+++++.++++++.+|. +++ |++.+|.... .
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~---vllLDEPt~~LD~~~~--~ 162 (230)
T TIGR02770 90 RSLGKLSKQARALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPP---FLIADEPTTDLDVVNQ--A 162 (230)
T ss_pred HHcCccHHHHHHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCC---EEEEcCCccccCHHHH--H
Confidence 00111111111 11100 00111114799999999999999998883 555 8999998766 6
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.+.. +|...++...|+..+++.++.+.
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 6666555321 78999998999999888888764
No 406
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.2e-11 Score=97.15 Aligned_cols=159 Identities=21% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCC--CCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPG--LFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG--~~~~~~~~~~~ 89 (228)
.++..++|+|+||+|||||+++|+|...+..| .++......... .......++.+.|. +... ...+.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~e~i 100 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDV 100 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCEECccccchHHHHHhheEEEeeChhhhhccc-cHHHHH
Confidence 46679999999999999999999998764444 232222111000 00111233444442 2221 111111
Q ss_pred H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
. ......+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~gLD~~~~ 173 (275)
T PRK13639 101 AFGPLNLGLSKEEVEKRVKEALKAV--GMEG--FENKPPHHLSGGQKKRVAIAGILAMKPE---IIVLDEPTSGLDPMGA 173 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH
Confidence 0 0111111111 1110 1111125799999999999999998884 555 9999999877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+.... +|++..+.+.|++.+++.++.+..
T Consensus 174 --~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 174 --SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred --HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 77777776542 789999988999988888876543
No 407
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.29 E-value=1.1e-11 Score=92.42 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+... . ..+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~-t----v~~~i 95 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG----EITLDGVPVSDLEKALSSLISVLNQRPYLFDT-T----LRNNL 95 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----EEEECCEEHHHHHHHHHhhEEEEccCCeeecc-c----HHHhh
Confidence 346679999999999999999999998764333 22221111000 0001112233444433221 0 00110
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-----
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----- 165 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----- 165 (228)
...+|.++++++.++++++.+| ++++ |++.+|.... +.+.+.+.+..
T Consensus 96 --------------------~~~LS~G~~qrv~laral~~~p---~~lllDEP~~~LD~~~~--~~l~~~l~~~~~~~ti 150 (178)
T cd03247 96 --------------------GRRFSGGERQRLALARILLQDA---PIVLLDEPTVGLDPITE--RQLLSLIFEVLKDKTL 150 (178)
T ss_pred --------------------cccCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH--HHHHHHHHHHcCCCEE
Confidence 2479999999999999999888 4666 8999998877 77777776532
Q ss_pred ---CchHHHHHHhcCCeEEEeeCCC
Q 027090 166 ---PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|+...+. .|++.+++.++.+
T Consensus 151 i~~sh~~~~~~-~~d~~~~l~~g~i 174 (178)
T cd03247 151 IWITHHLTGIE-HMDKILFLENGKI 174 (178)
T ss_pred EEEecCHHHHH-hCCEEEEEECCEE
Confidence 67777664 5776766666653
No 408
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=104.76 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=100.0
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE---eeeeeCCcEEEEEeCCCCCC-------
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---TTVLKDGQVVNVIDTPGLFD------- 81 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~------- 81 (228)
....-+++.+++++|++|||||||++.|.|...+..| .++...... ....+......+-+-|-++.
T Consensus 340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G----~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG----EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc----eEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 3345577889999999999999999999999875444 222221111 00111111223333333322
Q ss_pred ----CCCCcHHHHHHHHHHHhhc-----cCCccEEEEE-EeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 82 ----LSAGSEFVGKEIVKCLGMA-----KDGIHAFLVV-FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~-----~~~~~~il~v-~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
....+ +++....+.. .+.++.+=.. -+.+..+|+|+.+++.+++++..++ ++++ |.+++|
T Consensus 416 ~l~~~~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~LD 488 (559)
T COG4988 416 LLARPDASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHLD 488 (559)
T ss_pred hccCCcCCH----HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCCC
Confidence 11112 2233322211 1112222222 2334679999999999999998876 5777 899999
Q ss_pred CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
...+ ..+.+.+.+.. +|.+..+ ..++.++++.+|.+...
T Consensus 489 ~etE--~~i~~~l~~l~~~ktvl~itHrl~~~-~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 489 AETE--QIILQALQELAKQKTVLVITHRLEDA-ADADRIVVLDNGRLVEQ 535 (559)
T ss_pred HhHH--HHHHHHHHHHHhCCeEEEEEcChHHH-hcCCEEEEecCCceecc
Confidence 8876 66666665543 6766654 57888899988887654
No 409
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.2e-11 Score=96.70 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=95.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~--- 90 (228)
.++..++|+|+||+|||||+++|+|...+.+| .++....... ..........+.+.|.++.. ...+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~~ 101 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG----SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGP 101 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEhhhcChHHhhhcEEEEecCchhchh-hHHHHHhcch
Confidence 45679999999999999999999998764444 2222211110 00001112344455544321 1111100
Q ss_pred -------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090 91 -------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 91 -------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~ 160 (228)
.+....+... +...- +.-.....+|.|+++++.++++++.+|. +++ |++.+|.... +.+.+.
T Consensus 102 ~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~l~~~ 173 (241)
T PRK14250 102 MLKGEKNVDVEYYLSIV--GLNKE-YATRDVKNLSGGEAQRVSIARTLANNPE---VLLLDEPTSALDPTST--EIIEEL 173 (241)
T ss_pred hhcCcHHHHHHHHHHHc--CCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHH
Confidence 0111111111 11000 0011124799999999999999998884 555 9999998876 777666
Q ss_pred hhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 161 LGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 161 ~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+... . +|+...+...|+..+++.++.+.
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 6543 1 78999988899999888888764
No 410
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.29 E-value=8e-11 Score=101.27 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC--CcccccC-C-----------------CCCcceeeEeEeeeeeCCcEEEEEeC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASA-G-----------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~~-~-----------------~~~~t~~~~~~~~~~~~~~~~~~iDt 76 (228)
.+.++|+|+|+.|+|||||+++|+.. .....+. . ....+....... ..+++..+.++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~-~~~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQ-FPYRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEE-EEECCEEEEEEEC
Confidence 34579999999999999999999621 1100000 0 011222222222 2256778999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
||..+.. .+....+ ..+|++++|+++.++........++.+... . .|+++++||+|....
T Consensus 87 PG~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCccccc
Confidence 9965421 2233333 356999999999877766666655544321 2 279999999998654
No 411
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.7e-11 Score=97.92 Aligned_cols=158 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCC-CCCCCCCcHHH---
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPG-LFDLSAGSEFV--- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG-~~~~~~~~~~~--- 89 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+.......... .......++.+.|. +....+..+++
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 56779999999999999999999999775444 233222111100 00112234444441 22111111111
Q ss_pred -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
.+.+...+... +... +.-.....+|.|+++++.++++++.+|. ++| |++.+|.... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEPt~gLD~~~~--~ 177 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQV--GMED--FLNREPHRLSGGQKQRVAIAGVLALQPD---IIILDEATSMLDPRGR--R 177 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHc--CChh--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence 01111111111 1111 1111124799999999999999999884 555 9999999877 7
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.... +|++..+. .|++.+++.++.+.
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 7777665432 68888875 58888888887654
No 412
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.1e-11 Score=99.14 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=94.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAGS 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~~ 86 (228)
-+++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. +... +..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-tv~ 104 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG----SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE-TVL 104 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc-cHH
Confidence 356779999999999999999999998765444 22221111100 000111233444442 2221 111
Q ss_pred HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
+++. +.....+... +.... +.-.....+|.|+++++.++++++.+|. ++| |++.+|.
T Consensus 105 e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~ 178 (280)
T PRK13649 105 KDVAFGPQNFGVSQEEAEALAREKLALV--GISES-LFEKNPFELSGGQMRRVAIAGILAMEPK---ILVLDEPTAGLDP 178 (280)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCH
Confidence 1110 0000111110 11100 0111124799999999999999998884 555 9999998
Q ss_pred CccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... +.+.+.+.+.. +|....+...|+..+++.++.+.
T Consensus 179 ~~~--~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 179 KGR--KELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHH--HHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 877 77777665432 78999898999998888887754
No 413
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=2.8e-11 Score=101.54 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=108.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
...+..||+|+|.-|+||||||-+|+...++..-+...+. +..... ......+..++||..-.+ -.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPad--vtPe~vpt~ivD~ss~~~-----------~~ 70 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPAD--VTPENVPTSIVDTSSDSD-----------DR 70 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCc--cCcCcCceEEEecccccc-----------hh
Confidence 3455689999999999999999999988875443222111 111111 123455589999974211 11
Q ss_pred HHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchh----hHHHHhhccCCch
Q 027090 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK----TLEDFLGHECPKP 168 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~--~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~~~~ 168 (228)
.++....+.+|+++++...++ .+..-...||-+++..+++....|+|+|.||+|....... .+.-++++
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----- 145 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----- 145 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH-----
Confidence 112223345588888887763 3444456799999999977777799999999998754112 12222222
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCC
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYT 217 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 217 (228)
+.++. ..+..+|.+..++.|++.+-++++.-.-.+.|.
T Consensus 146 f~EiE-----------tciecSA~~~~n~~e~fYyaqKaVihPt~PLyd 183 (625)
T KOG1707|consen 146 FAEIE-----------TCIECSALTLANVSELFYYAQKAVIHPTSPLYD 183 (625)
T ss_pred hHHHH-----------HHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence 33433 345567777788888888777776654444443
No 414
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.3e-11 Score=94.59 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+.. ....+.+......... .........+.+.|.+.. .+..+++.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~ 114 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVA 114 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHH
Confidence 4667999999999999999999999864210 0011222222111100 001112345556666544 22222211
Q ss_pred H--------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 91 K--------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 91 ~--------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
- .+...+... +....+ ..-.....+|.|+++++.++++++.+|. +++ |++.+|...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~ 189 (258)
T PRK14268 115 YGPRIHGANKKDLDGVVENALRSA--ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK---IILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc--CCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcccCHHH
Confidence 0 001111111 110000 0011124799999999999999998884 555 899999987
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+++.. +|+...+...|++.+++.++.+..
T Consensus 190 ~--~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 190 T--ARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred H--HHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 7 77777776542 789999989999999998887643
No 415
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=96.66 Aligned_cols=167 Identities=13% Similarity=0.071 Sum_probs=97.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++.+++|+|+||+|||||+++|+|...+ ......+.+......... .........+.+.|.++.. ...++..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~enl~ 106 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVA 106 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCC-cHHHHHH
Confidence 45679999999999999999999998641 000011222222211100 0011223455666666532 2222111
Q ss_pred HHH-----------HHHHhhccCCccE---E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 KEI-----------VKCLGMAKDGIHA---F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ~~~-----------~~~~~~~~~~~~~---i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
-.. ...+.......+. . ...-.....+|.|+++++.+++++..+|. +++ |++.+|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~---llllDEP~~~LD~~~~ 183 (251)
T PRK14251 107 YGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPK---VVLLDEPTSALDPISS 183 (251)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCccCCHHHH
Confidence 000 0000000000111 0 00011124799999999999999998884 555 8999998877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.+.+.+.. +|....+.+.|++.+++.++.+..
T Consensus 184 --~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 184 --SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred --HHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 77777776542 789999999999988888887643
No 416
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=5.4e-12 Score=108.92 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=96.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCCcceeeEeEeee----eeCCcEEEEEeCCCCCCCCCCcH-
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAF--KASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSE- 87 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~~~~~~- 87 (228)
.-.++..++|+|+||||||||+++|+|...+ .+| .+.......... ........+.+.|.+.......+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 102 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG----EIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLEN 102 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe----EEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHH
Confidence 3356789999999999999999999998653 233 222111100000 00011223344443322111111
Q ss_pred ----------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 88 ----------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 88 ----------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
...+.+...+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGqkqrv~la~al~~~p~---lllLDEPt~~LD 175 (506)
T PRK13549 103 IFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLDI--NPATPVGNLGLGQQQLVEIAKALNKQAR---LLILDEPTASLT 175 (506)
T ss_pred hhhcccccccCCcCHHHHHHHHHHHHHHc--CCCC--CcccchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCC
Confidence 1111111222111 1110 1111124799999999999999998884 555 899999
Q ss_pred CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.... .++.+.+.++. +|++..+...|+..+++.++.+.
T Consensus 176 ~~~~--~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 176 ESET--AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HHHH--HHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 9877 77777775542 89999999999999998887653
No 417
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.5e-12 Score=101.71 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=98.0
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcE--EEEEeCCCCCCCCCC
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQV--VNVIDTPGLFDLSAG 85 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~--~~~iDtpG~~~~~~~ 85 (228)
+.+..-+.+..++++|+||||||||+++|.|...++.|. +........ ......++ +.+-|.. ++.+.+.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~----I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA-LF~HmtV 94 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR----IRLNGRVLFDVSNLAVRDRKVGFVFQHYA-LFPHMTV 94 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce----EEECCEeccchhccchhhcceeEEEechh-hcccchH
Confidence 344455677899999999999999999999998876662 222111000 00011111 2333332 3222221
Q ss_pred cHHH-------------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090 86 SEFV-------------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V 143 (228)
Q Consensus 86 ~~~~-------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v 143 (228)
.+++ ..++...+... -+--.....+|+++++++.+++++...| ++++ |
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-------~la~ryP~QLSGGQrQRVALARALA~eP---~vLLLDEP 164 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-------GLADRYPAQLSGGQRQRVALARALAVEP---KVLLLDEP 164 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhccc-------chhhcCchhcChHHHHHHHHHHHhhcCC---CeEeecCC
Confidence 1111 01111111110 0001111469999999999999998877 4666 8
Q ss_pred EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+..+|..-+ .+++..+.++. +|+..+..+.|+++.++.+|.+..
T Consensus 165 f~ALDa~vr--~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 165 FGALDAKVR--KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred chhhhHHHH--HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 999997655 55555555433 899999999999999999997653
No 418
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.28 E-value=1.5e-11 Score=100.24 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=99.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCC--CCCCCCCCc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTP--GLFDLSAGS 86 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtp--G~~~~~~~~ 86 (228)
.-.++..++|+|+||+|||||+++|+|...+.+| .+.......... ........+.+.| .+.......
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G----~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~ 118 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDG----EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIG 118 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc----EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHH
Confidence 3456789999999999999999999998764443 233222111000 0112234455555 233222222
Q ss_pred HHHHH----------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090 87 EFVGK----------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG 147 (228)
Q Consensus 87 ~~~~~----------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~ 147 (228)
+++.. .....+... +...- +.-.....+|+|+++++.++.++..+|. ++| |++.+
T Consensus 119 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~v--gl~~~-~~~~~p~~LSgG~~QRv~iArAL~~~P~---llilDEPts~L 192 (331)
T PRK15079 119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKV--GLLPN-LINRYPHEFSGGQCQRIGIARALILEPK---LIICDEPVSAL 192 (331)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHc--CCChH-HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccC
Confidence 22110 001111111 11000 0111125799999999999999998884 666 88999
Q ss_pred CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
|.... .++.+.++... +|++..+...|++++++.++.+..
T Consensus 193 D~~~~--~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 193 DVSIQ--AQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 98877 77776665432 799999999999999998887653
No 419
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2e-11 Score=97.61 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCC--CCCCCCCcHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPG--LFDLSAGSEF-- 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG--~~~~~~~~~~-- 88 (228)
.++..++|+|+||+|||||+++|+|...+.+| .++........ .........+.+.|. +... ...+.
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~-~v~~~l~ 108 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIPSEG----KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT-IVEEDVA 108 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEeccccccHHHHhhheEEEecChhhhhccc-cHHHHHH
Confidence 46679999999999999999999999775444 23322211100 000111233444442 1111 11110
Q ss_pred ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
..+.+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~gLD~~~~- 180 (280)
T PRK13633 109 FGPENLGIPPEEIRERVDESLKKV--GMYE--YRRHAPHLLSGGQKQRVAIAGILAMRPE---CIIFDEPTAMLDPSGR- 180 (280)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence 001111111111 1111 1111225899999999999999999884 555 9999999877
Q ss_pred hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.... +|++..+.. |++.+++.++.+.
T Consensus 181 -~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~ 223 (280)
T PRK13633 181 -REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV 223 (280)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE
Confidence 77777766431 688888765 9888888887654
No 420
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.28 E-value=6.5e-12 Score=108.29 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=97.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH--
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF-- 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~-- 88 (228)
.-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+....+..++
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 101 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG----SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY 101 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHH
Confidence 3456789999999999999999999998765444 22111110000 0001112233444443322111111
Q ss_pred ---------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 ---------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ---------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
..+.+...+... +.... .-.....+|+|+++++.+++++..+| +++| |++.+|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~ 174 (501)
T PRK11288 102 LGQLPHKGGIVNRRLLNYEAREQLEHL--GVDID--PDTPLKYLSIGQRQMVEIAKALARNA---RVIAFDEPTSSLSAR 174 (501)
T ss_pred hcccccccCCCCHHHHHHHHHHHHHHc--CCCCC--cCCchhhCCHHHHHHHHHHHHHHhCC---CEEEEcCCCCCCCHH
Confidence 111111222211 11100 11111479999999999999998888 3666 99999998
Q ss_pred ccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. .++.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 175 ~~--~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 175 EI--EQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 77 88887776542 89999999999999888887653
No 421
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.8e-11 Score=96.70 Aligned_cols=162 Identities=11% Similarity=0.082 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++.+++|+|+||+|||||++.|+|...+.. .+..+.+........ . .........+.+.+.+....+..++..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 107 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV 107 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHH
Confidence 4677999999999999999999999864210 001122222211110 0 001112234445555443322222211
Q ss_pred HHH-----------HHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 KEI-----------VKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ~~~-----------~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
... ...........+. .+ ..-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 108 AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP---DVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH
Confidence 000 0000000001110 00 011112579999999999999999888 3665 8999998877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
..+.+.+.+.. +|....+.+.|++.+++.
T Consensus 185 --~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 185 --LAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred --HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 77777776542 789999989999887775
No 422
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.28 E-value=6.5e-12 Score=110.39 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCC-------c
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAG-------S 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~-------~ 86 (228)
+++.+++|+|++|+|||||++.|+|.. +.+| .+..+...... .........+-+.|-+++..-. .
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G----~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~ 448 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQG----SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP 448 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc----EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC
Confidence 578899999999999999999999987 5444 23322211100 0001112233333433322100 0
Q ss_pred HHHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 87 EFVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 87 ~~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
+...+++..+...+ ..+.|.. +-+....+|+|++|++.++++++.++ ++++ +++.+|....
T Consensus 449 ~~~~eei~~al~~a~l~~~i~~lp~G~dT~--vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TSaLD~~te-- 521 (588)
T PRK11174 449 DASDEQLQQALENAWVSEFLPLLPQGLDTP--IGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTASLDAHSE-- 521 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhcccccccc--cccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--
Confidence 01112333322211 1223322 22333579999999999999999988 4666 8899998877
Q ss_pred hhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 155 KTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 155 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.+.+.+.. +|.... .+.|+.++++.+|.+..
T Consensus 522 ~~i~~~l~~~~~~~TvIiItHrl~~-i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 522 QLVMQALNAASRRQTTLMVTHQLED-LAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred HHHHHHHHHHhCCCEEEEEecChHH-HHhCCEEEEEeCCeEee
Confidence 77777666542 677754 56799999998887654
No 423
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=7.1e-12 Score=99.83 Aligned_cols=159 Identities=16% Similarity=0.067 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCC-CCCCCCcHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGL-FDLSAGSEFV- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~-~~~~~~~~~~- 89 (228)
-.++..++|+|+||+|||||+++|+|...+..| .+......... .........+.+.|.. .......+++
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 100 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG----KVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLA 100 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHH
Confidence 356789999999999999999999998764444 22222211100 0001112344555431 1111111111
Q ss_pred -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
.+.....+... +... +.-.....+|.|+++++.++++++.+|. ++| |++.+|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEPt~gLD~~~~- 172 (274)
T PRK13644 101 FGPENLCLPPIEIRKRVDRALAEI--GLEK--YRHRSPKTLSGGQGQCVALAGILTMEPE---CLIFDEVTSMLDPDSG- 172 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHC--CCHH--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence 00111111110 1110 1111125799999999999999998884 666 9999998876
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+++.. +|++..+ ..|++.+++.++.+.
T Consensus 173 -~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 173 -IAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred -HHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE
Confidence 77777665432 7888887 569988888887754
No 424
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.28 E-value=3.4e-10 Score=94.15 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeee-----------------------eCCcEEEEEe
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVL-----------------------KDGQVVNVID 75 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~-----------------------~~~~~~~~iD 75 (228)
.+|+|+|.+++|||||+|+|++.... ...++.++ +........ .....+.++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~---~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE---IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc---ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence 47999999999999999999987642 22333333 222211110 1123478999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (228)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (228)
|||+.............+...+ +.+|++++|++..
T Consensus 79 ~aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~ 113 (396)
T PRK09602 79 VAGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS 113 (396)
T ss_pred cCCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9998765433333333333333 4569999999985
No 425
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.28 E-value=7e-11 Score=83.77 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK-C 96 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~ 96 (228)
.+..++|.+-+|||+|++..+..+. .+....++..+.-...++... ...++++||+| ++.++ .
T Consensus 9 frlivigdstvgkssll~~ft~gkf--aelsdptvgvdffarlie~~pg~riklqlwdtag------------qerfrsi 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF--AELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG------------QERFRSI 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc--cccCCCccchHHHHHHHhcCCCcEEEEEEeeccc------------hHHHHHH
Confidence 4889999999999999999987765 222222333222211122222 33589999999 44444 4
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccE-EEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~-llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
..+.++..-.+++++|.+++-|.+... |++.+......|. |++ +||..|+|+... +++...- .+.+..
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~-k~VFlLVGhKsDL~Sq--RqVt~EE-------aEklAa 144 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPD-KVVFLLVGHKSDLQSQ--RQVTAEE-------AEKLAA 144 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCC-eeEEEEeccccchhhh--ccccHHH-------HHHHHH
Confidence 446678889999999999999998865 8888877777453 233 338899998865 5443211 223333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.|.-.+ +..|++++.|++|-++.+.+.+
T Consensus 145 ~hgM~F------VETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 145 SHGMAF------VETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred hcCceE------EEecccCCCcHHHHHHHHHHHH
Confidence 333111 2346667788888776664433
No 426
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.4e-11 Score=96.19 Aligned_cols=165 Identities=11% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+ ...+..+.+......... .........+.+.|.+.. ....++..
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~ 115 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIA 115 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHh
Confidence 46789999999999999999999998531 000111222222111100 000112334556565543 11111110
Q ss_pred ---------------HHHHHHHhhccCCccE-E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 91 ---------------KEIVKCLGMAKDGIHA-F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~-i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.+...+... +... + -..-.....+|.|+++++.++++++.+|. ++| |++.+|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lllLDEPt~~LD~~ 190 (260)
T PRK10744 116 FGVRLFEKLSRAEMDERVEWALTKA--ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE---VLLLDEPCSALDPI 190 (260)
T ss_pred hhHhhcCCCCHHHHHHHHHHHHHHc--CCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC---EEEEcCCCccCCHH
Confidence 0111111111 0000 0 00111124799999999999999998884 666 99999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.. ..+.+.+.+.. +|....+...|++.+++.++.+..
T Consensus 191 ~~--~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 191 ST--GRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 77 77777776542 789999888999999998887653
No 427
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.28 E-value=1.1e-11 Score=97.89 Aligned_cols=160 Identities=13% Similarity=0.044 Sum_probs=92.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.+....+..+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 100 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSG----EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMG 100 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhh
Confidence 346679999999999999999999998765444 22221111000 00001112333444332211111111
Q ss_pred -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC------ccccccEEE---EEeCCCC
Q 027090 90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG------KNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~------~~~~~~~ll---v~~~~D~ 149 (228)
.+....++... +... +.-.....+|.|+++++.++++++. +| ++++ |++.+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p---~lllLDEPt~~LD~ 173 (258)
T PRK13548 101 RAPHGLSRAEDDALVAAALAQV--DLAH--LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP---RWLLLDEPTSALDL 173 (258)
T ss_pred hcccCCCcHHHHHHHHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhcccccCCCC---CEEEEeCCcccCCH
Confidence 01111111111 1110 1111125799999999999999983 45 3555 8999998
Q ss_pred CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.+.. +|+...+...|+.++++.++.+.
T Consensus 174 ~~~--~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 174 AHQ--HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHH--HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 876 67766665431 68999998899999988888754
No 428
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1.3e-11 Score=98.65 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHH---
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFV--- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~--- 89 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|- .....+..+++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG----QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG 106 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence 46789999999999999999999998765444 22222211100 000111223444431 11111111111
Q ss_pred -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
.+.....+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|.... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qrv~lAral~~~p~---lLlLDEPt~~LD~~~~--~ 177 (279)
T PRK13650 107 LENKGIPHEEMKERVNEALELV--GMQD--FKEREPARLSGGQKQRVAIAGAVAMRPK---IIILDEATSMLDPEGR--L 177 (279)
T ss_pred HHhCCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--H
Confidence 01111111111 1111 1111124799999999999999998884 655 9999998876 7
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.... +|.+..+ ..|+.++++.++.+.
T Consensus 178 ~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~ 219 (279)
T PRK13650 178 ELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE 219 (279)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 7766655431 6888887 579988888888754
No 429
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.9e-11 Score=96.38 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=96.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|.... ......+.+......... .........+.+.|.++.. +..++.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl 107 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENV 107 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHH
Confidence 356679999999999999999999997420 000111222222111100 0001122345555555432 222211
Q ss_pred HH---------------HHHHHHhhccCCccE-EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 90 GK---------------EIVKCLGMAKDGIHA-FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 ~~---------------~~~~~~~~~~~~~~~-il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
.- .+...+... +... +. ..-.....+|.|+++++.++++++.+| ++++ |++.+|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~llllDEPt~~LD~ 182 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHA--ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEP---EVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHc--CCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCH
Confidence 00 000111100 1100 00 011112579999999999999998888 3665 9999998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.+.. +|+...+.+.|+..+++.++.+.
T Consensus 183 ~~~--~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 183 IAT--QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred HHH--HHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 877 77777776543 78999999999999988888764
No 430
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.28 E-value=9.9e-12 Score=101.27 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=93.2
Q ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----------
Q 027090 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK----------- 91 (228)
Q Consensus 24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~----------- 91 (228)
|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++.-
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G----~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSG----SIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence 5899999999999999999775544 2222211110 00011122345666665544332222110
Q ss_pred ---HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090 92 ---EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC 165 (228)
Q Consensus 92 ---~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~ 165 (228)
.+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.+.+.+..
T Consensus 77 ~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qRvalaraL~~~p~---lllLDEP~s~LD~~~~--~~l~~~l~~l~ 147 (325)
T TIGR01187 77 IKPRVLEALRLV--QLEE--FADRKPHQLSGGQQQRVALARALVFKPK---ILLLDEPLSALDKKLR--DQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHHHc--CCcc--hhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCccCCHHHH--HHHHHHHHHHH
Confidence 011111110 1111 1111225799999999999999998884 665 9999998877 77776665431
Q ss_pred ----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 166 ----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 166 ----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+|++.++...|++.+++.++.+.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~ 180 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA 180 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 79999999999999999888764
No 431
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.4e-11 Score=94.85 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||||||||+++|+|...+ ......+.+......... .........+.+.+.+....+..+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence 356779999999999999999999997531 000011222222111100 00111223455656555432222221
Q ss_pred H---------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 90 G---------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 ~---------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
. +.....+... +.+..+ ..-.....+|.|+++++.++++++.+|. +++ |++.+|.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~gLD~ 181 (252)
T PRK14256 107 IAGYKLNGRVNRSEADEIVESSLKRV--ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPE---VILMDEPASALDP 181 (252)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHc--CCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCH
Confidence 1 0011111110 110000 0011124799999999999999988884 555 9999998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
... ..+...+++.. +|....+.+.|++.+++.++.+..
T Consensus 182 ~~~--~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 182 IST--LKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHH--HHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 877 77777776553 789999999999998888887643
No 432
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.1e-11 Score=104.07 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.++.+++.+|. ++| |++++|.... .++.+.+.+.. +|++..+.+.|++.+++.++
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~---lLlLDEPt~~LD~~~~--~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPD---ILLLDEPTNNLDINTI--RWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcccCHHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 4799999999999999988873 555 9999999988 88988887643 89999999999999999888
Q ss_pred CC
Q 027090 186 KT 187 (228)
Q Consensus 186 ~~ 187 (228)
.+
T Consensus 229 ~i 230 (530)
T PRK15064 229 EL 230 (530)
T ss_pred EE
Confidence 75
No 433
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=3.3e-11 Score=88.98 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...|+|+|++|+|||+|+..|.....+.+- .+ + ..+.. .........+.++|+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS--~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TS--M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCee-cc--c--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 468999999999999999999876432111 11 1 11111 1111245569999999965432 2222221
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~----~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
. ....+.+|+||+|.. .....- .....++...-..+...|++|+.||.|....
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 233579999999986 222211 1223333333211222389999999998764
No 434
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=9e-12 Score=108.13 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=94.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCC--CCCCCCCcHHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--LFDLSAGSEFVG--- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG--~~~~~~~~~~~~--- 90 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+..... ....++.+.|. +.......+...
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G----~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSG----TVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 346679999999999999999999998764444 2211110 01112222221 111111111110
Q ss_pred ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
+.+...+... +... -..-.....+|+|+++++.++++++.++ +++| |++.+|.... ..+.+.+
T Consensus 410 ~~~~~~~~~~~~l~~~--~l~~-~~~~~~~~~LSgGq~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l 481 (530)
T PRK15064 410 QEGDDEQAVRGTLGRL--LFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQKP---NVLVMDEPTNHMDMESI--ESLNMAL 481 (530)
T ss_pred cCCccHHHHHHHHHHc--CCCh-hHhcCcccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHH
Confidence 0111111111 0000 0011112589999999999999998887 4666 9999999887 8888888
Q ss_pred hccC------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 162 GHEC------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 162 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+. +|+...+...|+..+++.++.+.
T Consensus 482 ~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 482 EKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 8754 89999999999999988887754
No 435
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.27 E-value=5.1e-11 Score=91.10 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---- 89 (228)
.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+... ...++.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~ 106 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEG----KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD 106 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCC----eEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC
Confidence 56789999999999999999999998764444 22222211100 0011223345555555432 111111
Q ss_pred ---HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
..++...+ + .-.....+|.++++++.++++++.+|. +++ |++.+|.... ..+.+.+.+
T Consensus 107 ~~~~~~~~~~l-------~----~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP~~~LD~~~~--~~l~~~l~~ 170 (207)
T cd03369 107 EYSDEEIYGAL-------R----VSEGGLNLSQGQRQLLCLARALLKRPR---VLVLDEATASIDYATD--ALIQKTIRE 170 (207)
T ss_pred CCCHHHHHHHh-------h----ccCCCCcCCHHHHHHHHHHHHHhhCCC---EEEEeCCcccCCHHHH--HHHHHHHHH
Confidence 01111111 1 111225799999999999999988874 555 8899998877 777777765
Q ss_pred cC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090 164 EC--------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 164 ~~--------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
.. +|....+.. |+..+++.++.+
T Consensus 171 ~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i 201 (207)
T cd03369 171 EFTNSTILTIAHRLRTIID-YDKILVMDAGEV 201 (207)
T ss_pred hcCCCEEEEEeCCHHHHhh-CCEEEEEECCEE
Confidence 43 677777754 877777777654
No 436
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=2.8e-11 Score=97.23 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=94.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--------eeeeCCcEEEEEeCCCC--CCCCCCc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLKDGQVVNVIDTPGL--FDLSAGS 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~~~~~~~~iDtpG~--~~~~~~~ 86 (228)
.++.+++|+|+||||||||+++|+|...+.+| .+........ .........++.+.|.+ ... ...
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~ 109 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETG----QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIE 109 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhh-HHH
Confidence 56679999999999999999999998765444 2222111100 00011122344555421 111 111
Q ss_pred HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
+.+. +.+...+... +... -+.-.....+|.|+++++.++++++.+|. ++| |++.+|.
T Consensus 110 enl~~~~~~~~~~~~~~~~~~~~ll~~~--~L~~-~~~~~~~~~LS~Gq~qrv~laral~~~p~---lLlLDEPt~~LD~ 183 (289)
T PRK13645 110 KDIAFGPVNLGENKQEAYKKVPELLKLV--QLPE-DYVKRSPFELSGGQKRRVALAGIIAMDGN---TLVLDEPTGGLDP 183 (289)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCH
Confidence 1110 0000111100 1100 00111125799999999999999998884 665 9999998
Q ss_pred CccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.+. . +|...++.+.|+..+++.++.+.
T Consensus 184 ~~~--~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 184 KGE--EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHH--HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 877 7776655433 1 79999999999999999888754
No 437
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.6e-11 Score=94.49 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGK---- 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~---- 91 (228)
.++.+++|+|+||+|||||+++|+|...+..| .+......... .........+.+.+.+.......++..-
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G----~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 98 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKPDSG----KILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence 46679999999999999999999998765444 22221111000 0001122344555555543222222210
Q ss_pred ----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090 92 ----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 92 ----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~ 158 (228)
+...++... +... +.-.....+|.++++++.+++++..++. +++ |++.+|.... ..+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEPt~gLD~~~~--~~l~ 169 (235)
T cd03299 99 RKVDKKEIERKVLEIAEML--GIDH--LLNRKPETLSGGEQQRVAIARALVVNPK---ILLLDEPFSALDVRTK--EKLR 169 (235)
T ss_pred cCCCHHHHHHHHHHHHHHc--CChh--HHhcCcccCCHHHHHHHHHHHHHHcCCC---EEEECCCcccCCHHHH--HHHH
Confidence 011111110 1110 0111114799999999999999998884 555 9999999877 7777
Q ss_pred HHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.... +|...++...|+.++.+.++.+..
T Consensus 170 ~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 7665431 689999888999998888887653
No 438
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.27 E-value=4.1e-11 Score=104.52 Aligned_cols=68 Identities=18% Similarity=0.008 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.++.+++.+|. ++| |+|++|.... .++.+.++... +|+...+...|+.++++.++
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~---vlLLDEPt~~LD~~~~--~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPD---MLLLDEPTNHLDAESV--AWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCC---EEEEcCCCCcCChHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 5799999999999999998884 666 9999999888 88888888755 89999999999999888887
Q ss_pred CC
Q 027090 186 KT 187 (228)
Q Consensus 186 ~~ 187 (228)
.+
T Consensus 237 ~i 238 (556)
T PRK11819 237 RG 238 (556)
T ss_pred EE
Confidence 64
No 439
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3e-11 Score=94.86 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|... +.+| .++........ .........+.+.|.++.. ...+++
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~-tv~eni 99 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG----LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK-SIYENI 99 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce----EEEECCEecccCCHHHHhhhEEEEecCCccccc-cHHHHh
Confidence 34678999999999999999999999753 2222 22222111100 0001122345555554431 111111
Q ss_pred H----------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 90 G----------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 90 ~----------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
. .++...+... +.+..+ ..-.....+|.++++++.++++++.+| ++++ |++.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEP~~~LD 174 (246)
T PRK14269 100 SYAPKLHGMIKNKDEEEALVVDCLQKV--GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP---KLLLLDEPTSALD 174 (246)
T ss_pred hhHHhhcCcccChHHHHHHHHHHHHHc--CCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCC
Confidence 0 0111111111 110000 011112479999999999999999888 4666 999999
Q ss_pred CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.... ..+.+.+.+.. +|....+...|+..+++.++.+..
T Consensus 175 ~~~~--~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 175 PISS--GVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHHH--HHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 8877 77777776542 789999999999999998887653
No 440
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.2e-11 Score=95.22 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC--CCcceeeEeE---eeeeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--SGVTKTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~--~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
.++..++|+|+||+|||||++.|+|...+.+|... +......... ...........+.+.|.++...+..++..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 113 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY 113 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHH
Confidence 45679999999999999999999998765544211 1110000000 00001122234555565543322221110
Q ss_pred --------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 91 --------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 91 --------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+....++... +.+..+ ........+|.++++++.++++++.+|. +++ |++.+|...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~---llllDEPt~~LD~~~ 188 (257)
T PRK14246 114 PLKSHGIKEKREIKKIVEECLRKV--GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK---VLLMDEPTSMIDIVN 188 (257)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHc--CCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCCccCCHHH
Confidence 0001111111 111110 0111225799999999999999998884 555 999999987
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+.+.. +|....+...|++.+++.++.+..
T Consensus 189 ~--~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 189 S--QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred H--HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 7 78887776543 788888889999888888877543
No 441
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.26 E-value=9.5e-12 Score=109.80 Aligned_cols=165 Identities=21% Similarity=0.189 Sum_probs=100.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCc----
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGS---- 86 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~---- 86 (228)
-.-+++.+|+|+|++|||||||.+.|+|...+..| .+..+...... ....+....+-+.+-++...-.+
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G----~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l 569 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG----RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIAL 569 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhc
Confidence 34567889999999999999999999999885555 33332221111 00111112222323222211000
Q ss_pred ---HHHHHHHHHHHhhccCCccEEEE---------EEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 87 ---EFVGKEIVKCLGMAKDGIHAFLV---------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~~il~---------v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+...+++..+...+ ++|.++. +-..+..+|+|++|++.+++++..+| ++++ +++.+|...
T Consensus 570 ~~p~~~~e~i~~A~~~a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDEaTSaLD~~s 644 (709)
T COG2274 570 GNPEATDEEIIEAAQLA--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDEATSALDPET 644 (709)
T ss_pred CCCCCCHHHHHHHHHHh--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeCcccccCHhH
Confidence 00113333333222 2232222 22334579999999999999999988 4666 889999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
+ +.+.+.+.+.. +|.. ..++.|++++++..|++...
T Consensus 645 E--~~I~~~L~~~~~~~T~I~IaHRl-~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 645 E--AIILQNLLQILQGRTVIIIAHRL-STIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred H--HHHHHHHHHHhcCCeEEEEEccc-hHhhhccEEEEccCCceecc
Confidence 7 77777666644 4444 45578999999999988765
No 442
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=2.4e-11 Score=96.96 Aligned_cols=159 Identities=17% Similarity=0.086 Sum_probs=94.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~- 90 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. ........+++.
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG----KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAF 105 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC----EEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence 356789999999999999999999999875444 22222111100 001111234444442 121111111110
Q ss_pred -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
+.+..++... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~lAraL~~~p~---llllDEPt~~LD~~~~-- 176 (277)
T PRK13642 106 GMENQGIPREEMIKRVDEALLAV--NMLD--FKTREPARLSGGQKQRVAVAGIIALRPE---IIILDESTSMLDPTGR-- 176 (277)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--
Confidence 0011111110 1111 1111225799999999999999998884 665 9999998877
Q ss_pred hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+.. +|.+..+. .|+..+++.++.+.
T Consensus 177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~ 219 (277)
T PRK13642 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII 219 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 77777665331 78888875 58888888888754
No 443
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.26 E-value=1.7e-11 Score=93.67 Aligned_cols=134 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee------eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV------LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+........ .. ........+.+.|.+....+..+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~ 97 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG----QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL 97 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHH
Confidence 45679999999999999999999998765444 2222211100 00 0011223445555554432222211
Q ss_pred H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
. +.+...+... +... +.-.....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~lS~G~~qr~~laral~~~p~---llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 98 DLGLKYKKLSKKEKREKKKEALEKV--GLNL--KLKQKIYELSGGEQQRVALARAILKDPP---LILADEPTGSLDPKNR 170 (206)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHc--Cchh--hhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcCCCCHHHH
Confidence 0 0111111111 1110 1111124799999999999999998884 555 9999998776
Q ss_pred chhhHHHHhhc
Q 027090 153 HEKTLEDFLGH 163 (228)
Q Consensus 153 ~~~~~~~~~~~ 163 (228)
..+.+.+++
T Consensus 171 --~~l~~~l~~ 179 (206)
T TIGR03608 171 --DEVLDLLLE 179 (206)
T ss_pred --HHHHHHHHH
Confidence 777776665
No 444
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.1e-11 Score=96.87 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA-----FKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGS 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~-----~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~ 86 (228)
.++..++|+|+||+|||||+++|+|... +.+| .+......... ........++.+.|.++.. ...
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~ 119 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG----EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIY 119 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce----EEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHH
Confidence 4677999999999999999999999642 1222 22221111100 0011123455566655432 211
Q ss_pred HHHHH---------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090 87 EFVGK---------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG 146 (228)
Q Consensus 87 ~~~~~---------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~ 146 (228)
++... .....+... +....+ ..-.....+|.|+++++.++++++.+|. +++ |++.
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~---lllLDEPt~~ 194 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKA--ALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA---VLLLDEPASA 194 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHc--CCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC---EEEEcCCCcc
Confidence 11100 000011100 000000 0011125799999999999999998884 555 9999
Q ss_pred CCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 147 GDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+|.... ..+.+.+.+.. +|++..+.+.|++.+++.++.+..
T Consensus 195 LD~~~~--~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 195 LDPISN--AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred cCHHHH--HHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 998877 77777776542 689999999999999988887643
No 445
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.26 E-value=1.7e-11 Score=96.73 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCC-CCCCCCC-cHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPG-LFDLSAG-SEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG-~~~~~~~-~~~~--- 89 (228)
-.++..++|+|+||+|||||++.|+|...+......+.+......... ........++.+.|. .+..... .+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~ 105 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARET 105 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHH
Confidence 346679999999999999999999998764110012222221111100 001111234455443 1111111 0000
Q ss_pred ---------HHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 90 ---------GKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
...+...+... +..... +.-.....+|.|+++++.++++++.+|. ++| |++.+|.... +.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lLlLDEPt~~LD~~~~--~~ 178 (254)
T PRK10418 106 CLALGKPADDATLTAALEAV--GLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP---FIIADEPTTDLDVVAQ--AR 178 (254)
T ss_pred HHHcCCChHHHHHHHHHHHc--CCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC---EEEEeCCCcccCHHHH--HH
Confidence 00111111111 111000 0111124799999999999999998884 555 8899998766 66
Q ss_pred HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.+.... +|...++...|+..+++.++.+..
T Consensus 179 l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 179 ILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 666655431 789999989999988888887643
No 446
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=3.2e-11 Score=94.87 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+ ......+.+......... .........+.+.|.+.. ....++..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~ 105 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVA 105 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHH
Confidence 46779999999999999999999996431 000011222222111100 001112245556666554 22222111
Q ss_pred HH-----------HHHHHhhccCCccE---E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 KE-----------IVKCLGMAKDGIHA---F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ~~-----------~~~~~~~~~~~~~~---i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.. ............+. + -..-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP~~~LD~~~~ 182 (250)
T PRK14240 106 YGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE---VLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH
Confidence 00 00000000001110 0 00111225799999999999999998884 555 9999999877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+.+.. +|+...+.+.|++.+++.++.+..
T Consensus 183 --~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 183 --LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred --HHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 77777776543 689988889999988888887653
No 447
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.5e-11 Score=96.34 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|+|...+.. .+..+.++........ .........+.+.|.+... ...+.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl 120 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENV 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHH
Confidence 35678999999999999999999999764210 0112223222211100 0011122355666665542 222221
Q ss_pred H----------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 90 G----------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 90 ~----------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
. ..+...+... ++...+ ..-.....+|.|+++++.++++++.+|. +++ |++.+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD 195 (267)
T PRK14235 121 AYGPRIHGLARSKAELDEIVETSLRKA--GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPE---VILMDEPCSALD 195 (267)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHc--CCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcCCC
Confidence 0 0000111100 110000 0011124799999999999999998884 555 999999
Q ss_pred CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.... ..+.+.++... +|....+...|+..+++.++.+.
T Consensus 196 ~~~~--~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 196 PIAT--AKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHHH--HHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 8877 77777776543 78999988999988888888764
No 448
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8.7e-12 Score=101.56 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=98.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-------eCCcEEEEEeCCC--CCCCCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-------KDGQVVNVIDTPG--LFDLSA 84 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~iDtpG--~~~~~~ 84 (228)
..-.++..++|+|+||||||||+++|+|...+......+.+........... .......+.+-|. +.....
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 3445677999999999999999999999864211112222222221110000 0011234555552 221111
Q ss_pred CcHHHH---------------HHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090 85 GSEFVG---------------KEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT 145 (228)
Q Consensus 85 ~~~~~~---------------~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~ 145 (228)
..+... +.....+... +.+... ..-.....+|+|+++++.++++++.+|. ++| |++
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~--gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~---llilDEPts 182 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV--GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK---LLIADEPTT 182 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC--CCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCC
Confidence 111110 0111111111 111000 0111225799999999999999998884 666 899
Q ss_pred CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.+|.... ..+.+.+.++. +|++..+.+.|+.++++..|.+...
T Consensus 183 ~LD~~~~--~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 183 ALDVTIQ--AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9998877 77777666542 7999999999999999998876543
No 449
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.8e-12 Score=101.77 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCV 181 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (228)
..+|+|+++++.++.+++.+|. ++| |++.+|.... .++.+.++++. +|++..+...|+.+++
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~---llilDEPts~LD~~~~--~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPR---LLIADEPTNAMEPTTQ--AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCC---EEEEeCCCCcCCHHHH--HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 4799999999999999998884 555 9999998877 77777766532 7999999999999999
Q ss_pred EeeCCCcc
Q 027090 182 LFDNKTKD 189 (228)
Q Consensus 182 ~~~~~~~~ 189 (228)
+..|.+..
T Consensus 232 m~~G~ive 239 (330)
T PRK15093 232 LYCGQTVE 239 (330)
T ss_pred EECCEEEE
Confidence 98887643
No 450
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=3.5e-11 Score=94.79 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
-.++..++|+|+||+|||||+++|+|... +. ....+.+........ . .........+.+.|.++. ....++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 105 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYEN 105 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHH
Confidence 34678999999999999999999998632 21 001122222211110 0 001122344556666554 222222
Q ss_pred HHHH-----------HHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 VGKE-----------IVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ~~~~-----------~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.-. ............... + ..-.....+|.|+++++.++++++.+| +++| |++.+|..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~ 182 (252)
T PRK14239 106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSP---KIILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCccccCHH
Confidence 1100 000000000001100 0 011122579999999999999998888 3666 99999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.. ..+.+.+.+.. +|++..+.+.|++.+++.++.+..
T Consensus 183 ~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 183 SA--GKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred HH--HHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 77 77777776542 789999999999999998887643
No 451
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=3.1e-11 Score=95.47 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
+++..++|+|+||+|||||+++|+|...+ ......+.++........ ........++.+-|.++.. ...+...
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~ 114 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVA 114 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHH
Confidence 46779999999999999999999997542 000011222222211100 0001122344455554432 1111110
Q ss_pred ---------------HHHHHHHhhccCCccE-EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 91 ---------------KEIVKCLGMAKDGIHA-FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~-il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.....+... +... +. ..-.....+|.|+++++.++++++.+|. +++ |++.+|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~~LD~~ 189 (259)
T PRK14274 115 YGPRIHGTKNKKKLQEIVEKSLKDV--ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD---VLLMDEPTSALDPV 189 (259)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHc--CCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHH
Confidence 0000111110 1100 00 0111224799999999999999998884 666 99999998
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+.+.. +|....+.+.|++.+++.++.+.
T Consensus 190 ~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 190 ST--RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred HH--HHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 77 77777776653 68999988999998888888764
No 452
>PRK13351 elongation factor G; Reviewed
Probab=99.25 E-value=1.3e-10 Score=103.64 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
..++|+|+|+.|+|||||+++|+.... ...... .+..|........ .+....+.++||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-DWDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-EECCEEEEEEECCCcHH
Confidence 457999999999999999999974311 000000 1233433333332 25677899999999543
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
. ..+.. .....+|++++++++..+.+......+..+... . .|+++++||+|....
T Consensus 86 f-------~~~~~----~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TGEVE----RSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA 140 (687)
T ss_pred H-------HHHHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence 1 12222 333466999999999877777766666554332 2 278999999998753
No 453
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=3.2e-11 Score=95.12 Aligned_cols=169 Identities=10% Similarity=0.071 Sum_probs=97.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-.++.+++|+|+||+|||||+++|+|...+..+ ...+.+......... .........+.+.|.+.. .+..++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 107 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDN 107 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHH
Confidence 3456789999999999999999999998653210 011222221111100 001112234555555542 221111
Q ss_pred HHHH-----------HHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 VGKE-----------IVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ~~~~-----------~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
+.-. ............+.. + ..-.....+|+|+++++.++++++.+|. ++| |++.+|..
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~---lllLDEPt~~LD~~ 184 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPN---VILMDEPTSALDPI 184 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcccCHH
Confidence 1000 000000000000100 0 0011124799999999999999998884 555 89999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.. ..+.+.+.+.. +|....+...|++.+++.++.+..
T Consensus 185 ~~--~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 185 ST--GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 77 77777776653 789999888999988888887653
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.25 E-value=3.6e-11 Score=95.04 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCV 181 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~ 181 (228)
..+|.|+++++.++++++.+|. +++ |++.+|.... .++.+.++.. . +|....+...|+..++
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~ 224 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPR---LVFMDEPTGGLDVSVQ--ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 5799999999999999998884 666 9999998876 7777765432 1 7899999889999999
Q ss_pred EeeCCCc
Q 027090 182 LFDNKTK 188 (228)
Q Consensus 182 ~~~~~~~ 188 (228)
+.++.+.
T Consensus 225 l~~g~i~ 231 (258)
T PRK11701 225 MKQGRVV 231 (258)
T ss_pred EECCEEE
Confidence 9888764
No 455
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.25 E-value=6.3e-11 Score=103.31 Aligned_cols=68 Identities=16% Similarity=-0.019 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.++.+++.+|. ++| |+|++|.... .++.+.+.+.. +|+...+...|+..+++.++
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~---lLLLDEPt~~LD~~~~--~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPD---MLLLDEPTNHLDAESV--AWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCCCCChHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 4799999999999999988883 666 9999999988 88988888754 89999999999988888877
Q ss_pred CC
Q 027090 186 KT 187 (228)
Q Consensus 186 ~~ 187 (228)
.+
T Consensus 235 ~i 236 (552)
T TIGR03719 235 RG 236 (552)
T ss_pred EE
Confidence 64
No 456
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.25 E-value=1.8e-11 Score=106.06 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eE----eEeee-----eeCCcEEEEEeCCCCCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CE----MKTTV-----LKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~----~~~~~-----~~~~~~~~~iDtpG~~~~~~ 84 (228)
.-.++.+++|+|+||||||||+++|+|...+.+| .+... .. ..... .......++.+.|.+.....
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 381 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG----EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCc
Confidence 3456789999999999999999999998764444 22221 00 00000 00111234455555444322
Q ss_pred CcHHHHH-------------HHHHHHhhccCCccEE---EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090 85 GSEFVGK-------------EIVKCLGMAKDGIHAF---LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT 145 (228)
Q Consensus 85 ~~~~~~~-------------~~~~~~~~~~~~~~~i---l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~ 145 (228)
..+.+.. .....+... +.... -+.-.....+|+|+++++.+++++..+| +++| |++
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~lLllDEPt~ 456 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEP---RIVILDEPTG 456 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence 2222210 011111111 11100 0011112479999999999999998887 4666 999
Q ss_pred CCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 146 GGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+|.... +.+.+.+.+. . +|++..+...|+..+++.++.+.
T Consensus 457 ~LD~~~~--~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 457 TMDPITK--VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred cCCHHHH--HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999877 7777777432 1 89999999999999999888754
No 457
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7.7e-11 Score=93.24 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=94.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee---e--eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---V--LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~---~--~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-+++.+++|+|+||+|||||+++|+|...+..+ ...+.++........ . ........+.+.|.++. ....++.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 109 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNV 109 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc-ccHHHHH
Confidence 356779999999999999999999998653111 112233322221100 0 01122344555555542 2222221
Q ss_pred H-------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 G-------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ~-------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
. ..+...+... +....+ ..-.....+|.++++++.++++++.+|. +++ |++.+|...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPtsgLD~~~ 184 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGA--ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPE---VLLLDEPCSALDPIA 184 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHc--CCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCccCCHHH
Confidence 1 0111111111 110000 0011124699999999999999998884 665 999999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
. .++.+.+++.. +|.+..+.+.|++++++.
T Consensus 185 ~--~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 185 T--RRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred H--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 7 77777777653 789999999999888885
No 458
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.24 E-value=2.3e-11 Score=92.61 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=76.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
.-.++.+++|+|+||+|||||++.|+|...+.+| .+......... .........+.+.|++.......+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 97 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG----RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW 97 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhh
Confidence 3456789999999999999999999998765444 22221111100 00111223344445443322211111
Q ss_pred -----HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 90 -----GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 90 -----~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
.+.+...+... +... +.-.....+|.++++++.+++++..+|. +++ |++.+|.... ..+.+.+
T Consensus 98 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l 168 (201)
T cd03231 98 HADHSDEQVEEALARV--GLNG--FEDRPVAQLSAGQQRRVALARLLLSGRP---LWILDEPTTALDKAGV--ARFAEAM 168 (201)
T ss_pred cccccHHHHHHHHHHc--CChh--hhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH--HHHHHHH
Confidence 01111111111 1110 1111124799999999999999998884 555 8899998776 7777666
Q ss_pred hc
Q 027090 162 GH 163 (228)
Q Consensus 162 ~~ 163 (228)
.+
T Consensus 169 ~~ 170 (201)
T cd03231 169 AG 170 (201)
T ss_pred HH
Confidence 54
No 459
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.6e-11 Score=98.00 Aligned_cols=167 Identities=11% Similarity=0.136 Sum_probs=100.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|++|||||||+++|+|...+..+ +..+.+..+..... . .........+.+.|.++.. +..+++
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~-ti~eNi 183 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM-SIFDNV 183 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC-cHHHHH
Confidence 356679999999999999999999998642110 11222222221110 0 0112223445566665532 111111
Q ss_pred H----------HH-----HHHHHhhcc--CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 90 G----------KE-----IVKCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 ~----------~~-----~~~~~~~~~--~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
. ++ ....+.... ..++ -.+-.....+|+|+++++.++++++.++. +++ |++.+|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~--~~~~~~~~~LSgGqkqRl~LARAl~~~p~---IlLLDEPts~LD~ 258 (329)
T PRK14257 184 AYGPRNNGINDRKILEKIVEKSLKSAALWDEVK--DDLDKAGNALSGGQQQRLCIARAIALEPE---VLLMDEPTSALDP 258 (329)
T ss_pred HhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh--hhhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCH
Confidence 1 00 011111110 0000 01112235799999999999999998884 666 8999998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
... ..+.+.+.... +|.+..+.+.|++++++.+|.+...
T Consensus 259 ~~~--~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 259 IAT--AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 766 77777776543 7899999999999999999876543
No 460
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=4.9e-11 Score=94.82 Aligned_cols=65 Identities=8% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
..+|.++++++.++++++.+|. +++ |++.+|.... ..+.+.+++.. +|++..+...|++.+++.
T Consensus 153 ~~LS~G~~qrl~laral~~~p~---lllLDEPt~gLD~~~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPE---VILMDEPCSALDPIST--LKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHHHH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 4799999999999999998884 655 9999998877 77777776543 789999999999888887
Q ss_pred e
Q 027090 184 D 184 (228)
Q Consensus 184 ~ 184 (228)
+
T Consensus 228 ~ 228 (269)
T PRK14259 228 A 228 (269)
T ss_pred c
Confidence 6
No 461
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.24 E-value=1.2e-11 Score=110.60 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSE----- 87 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~----- 87 (228)
-+++.+++|+|++|||||||++.|+|...+.+| .+..+..... ..........+.+.|-++...-.+.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G----~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~ 551 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG----SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA 551 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCC
Confidence 457889999999999999999999999875544 3333221111 0001112233344444332210000
Q ss_pred -HHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 88 -FVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 88 -~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
...+++..+.... ..+.|..+ -+....+|+|++|++.++++++.+| ++++ +++.+|....
T Consensus 552 ~~~~e~i~~al~~a~l~~~i~~lp~G~dt~i--ge~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~LD~~te-- 624 (686)
T TIGR03797 552 PLTLDEAWEAARMAGLAEDIRAMPMGMHTVI--SEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSALDNRTQ-- 624 (686)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--
Confidence 0012233332211 11223222 2333579999999999999999988 5666 8899998877
Q ss_pred hhHHHHhhccC------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 155 KTLEDFLGHEC------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 155 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
+.+.+.+++.. +|....+ +.|+.++++.+|++...
T Consensus 625 ~~i~~~L~~~~~T~IiItHr~~~i-~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 625 AIVSESLERLKVTRIVIAHRLSTI-RNADRIYVLDAGRVVQQ 665 (686)
T ss_pred HHHHHHHHHhCCeEEEEecChHHH-HcCCEEEEEECCEEEEE
Confidence 78877777653 6777555 66999999988876543
No 462
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=8.1e-11 Score=92.70 Aligned_cols=169 Identities=11% Similarity=0.093 Sum_probs=98.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||+++|.|...+... ...+.+......... .........+.+.|.++...+..++.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 356779999999999999999999998643210 011222222111100 00111223455556554432222221
Q ss_pred HHHH-----------HHHHhhccCCccEE--E-EEEe-CCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 GKEI-----------VKCLGMAKDGIHAF--L-VVFS-VTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ~~~~-----------~~~~~~~~~~~~~i--l-~v~~-~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.... ...........+.. + -..+ ....+|.|+++++.+++++..+| ++++ |++.+|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~~ 183 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP---EILLMDEPTSALDPAS 183 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHH
Confidence 1000 00000000001000 0 0011 11479999999999999999888 4666 999999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+++.. +|....+...|++.+++.++.+..
T Consensus 184 ~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 184 T--ARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred H--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 7 77777776543 789999988999999998887643
No 463
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.24 E-value=4.7e-11 Score=94.85 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCC--CCCCCCCcHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPG--LFDLSAGSEF 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG--~~~~~~~~~~ 88 (228)
.++.+++|+|+||+|||||+++|+|...+.+| .+.......... ........+.+.|. +.......+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~ 111 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI 111 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence 46679999999999999999999998764444 222222111000 00112234445442 3221111111
Q ss_pred HH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 VG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
.. ......+... +.+.-+ .-.....+|.|+++++.++++++.+|. ++| |++.+|..
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~-~~~~~~~LS~Ge~qrl~laral~~~p~---lllLDEPt~~LD~~ 185 (268)
T PRK10419 112 IREPLRHLLSLDKAERLARASEMLRAV--DLDDSV-LDKRPPQLSGGQLQRVCLARALAVEPK---LLILDEAVSNLDLV 185 (268)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHc--CCChhH-hhCCCccCChHHHHHHHHHHHHhcCCC---EEEEeCCCcccCHH
Confidence 10 0011111111 111001 111224799999999999999998884 555 89999987
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.++... +|....+.+.|+..+++.++.+.
T Consensus 186 ~~--~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 186 LQ--AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred HH--HHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 66 66655554331 78999998999988888877654
No 464
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=5.7e-11 Score=93.53 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++..++|+|+||+|||||++.|+|...+. .....+.+.......... ........+.+.|.++. ....++.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHH
Confidence 3567899999999999999999999975420 000112222221111000 00112345555555543 2222211
Q ss_pred H---------------HHHHHHHhhccCCcc-EEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 90 G---------------KEIVKCLGMAKDGIH-AFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 90 ~---------------~~~~~~~~~~~~~~~-~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
. +.....+... +.. .+- ..-.....+|.|+++++.++++++.++ ++++ |++.+|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~ 180 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKA--ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKP---DVILMDEPTSALDP 180 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHc--CCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCH
Confidence 1 0000111110 000 000 011112579999999999999998887 4666 9999999
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
... ..+.+.+.+.. +|+...+.+.|++.+++.++.+..
T Consensus 181 ~~~--~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 181 IST--LKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred HHH--HHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 877 77777776542 789999889999999998887643
No 465
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.23 E-value=1.1e-11 Score=109.68 Aligned_cols=153 Identities=11% Similarity=0.058 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFV----- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~----- 89 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+..... ..+ .++.+.+ .+....+..+.+
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G----~i~~~~~-~~i-------~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG----RIHCGTK-LEV-------AYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----EEEECCC-cEE-------EEEeCcccccCCCCCHHHHHHhhcc
Confidence 356679999999999999999999998765444 2211000 000 0111111 111111111110
Q ss_pred -------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 90 -------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 90 -------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
...+...+... ++..- ........+|+|+++++.+++.++.++ +++| |+|++|.... ..+.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l~~ 481 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDF--LFHPK-RAMTPVKALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELLEE 481 (635)
T ss_pred cccccchHHHHHHHHHhc--CCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence 01111111111 00000 001111479999999999999998877 4666 9999999887 88888
Q ss_pred HhhccC------CchHHHHHHhcCCeEEEe-eCCCc
Q 027090 160 FLGHEC------PKPLKEILQLCDNRCVLF-DNKTK 188 (228)
Q Consensus 160 ~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~ 188 (228)
.++.+. +|+...+...|+.++++. ++.+.
T Consensus 482 ~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 482 LLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred HHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 888754 899999999999888886 56543
No 466
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=6.9e-11 Score=92.07 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=93.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|.+... ...++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~enl~~~ 99 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG----RILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAYG 99 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCC----EEEECCEEhhhCCHHHHHhhEEEeCCCCeeccc-cHHHHhhcc
Confidence 346679999999999999999999999765444 22221111000 0000111222233322211 000000
Q ss_pred -----HHHHHHH---------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 -----GKEIVKC---------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 -----~~~~~~~---------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
..++... +.....+.+.. .-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~---lllLDEP~~~LD~~~~ 174 (234)
T cd03251 100 RPGATREEVEEAARAANAHEFIMELPEGYDTV--IGERGVKLSGGQRQRIAIARALLKDPP---ILILDEATSALDTESE 174 (234)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhcccCccee--eccCCCcCCHHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHHH
Confidence 0111110 00000012211 112225799999999999999998884 555 9999999877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+.. +|....+.. |+..+++.++.+.
T Consensus 175 --~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 175 --RLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred --HHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe
Confidence 78877776643 788888755 9888888888764
No 467
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.23 E-value=1.4e-11 Score=110.59 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC----------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL---------- 82 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~---------- 82 (228)
-+++.+++|+|++|||||||++.|+|...+..| .+..+..... ..........+.+.|-+++.
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G----~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~ 577 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD 577 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC
Confidence 467889999999999999999999999875544 3332221110 00011111233333333221
Q ss_pred -CCCcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 83 -SAGSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 83 -~~~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
...+ +++..+... ...+.|..+ -+....+|+|++|++.++++++.+| ++++ +++.+|.
T Consensus 578 ~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i--~e~G~~LSGGQrQRiaLARall~~p---~iliLDEptS~LD~ 648 (710)
T TIGR03796 578 PTIPD----ADLVRACKDAAIHDVITSRPGGYDAEL--AEGGANLSGGQRQRLEIARALVRNP---SILILDEATSALDP 648 (710)
T ss_pred CCCCH----HHHHHHHHHhCCHHHHHhCcCccccee--ccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECccccCCH
Confidence 1112 222222221 112334332 2334579999999999999999888 4666 8899998
Q ss_pred CccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 150 LEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
... ..+.+.+.... +|....+ ..|+.++++.+|.+..
T Consensus 649 ~te--~~i~~~l~~~~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 649 ETE--KIIDDNLRRRGCTCIIVAHRLSTI-RDCDEIIVLERGKVVQ 691 (710)
T ss_pred HHH--HHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEeCCEEEE
Confidence 877 77777776533 6777655 5699999998887654
No 468
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3e-11 Score=96.10 Aligned_cols=168 Identities=10% Similarity=0.077 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||+|||||+++|+|.... ...+..+.+........ . .........+.+.|.++.. ...++.
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni 125 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNV 125 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHH
Confidence 356789999999999999999999997541 00011122222221110 0 0011223455666665432 222211
Q ss_pred HHH-----------HHHHHhhccCCccE---EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 GKE-----------IVKCLGMAKDGIHA---FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ~~~-----------~~~~~~~~~~~~~~---il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.-. ............+. +. ..-.....+|.|+++++.++++++.++. +++ |++.+|...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~---lllLDEPt~~LD~~~ 202 (271)
T PRK14238 126 TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD---VILMDEPTSALDPIS 202 (271)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCCcCCHHH
Confidence 000 00000000001100 00 0011125799999999999999998884 555 999999987
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+.... +|++..+...|++.+++.++.+..
T Consensus 203 ~--~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 203 T--LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred H--HHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 7 77777766543 688999889999988988887643
No 469
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=2.3e-11 Score=92.79 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG--- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~--- 90 (228)
-.++.+++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.+.+....+..+...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAG----EVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ 99 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHH
Confidence 346679999999999999999999998775444 22222111100 001112233445454443222222110
Q ss_pred --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
+.+...+... +... +.-.....+|.++++++.++++++.+|. +++ |++.+|.... ..+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~l~~ 170 (204)
T PRK13538 100 RLHGPGDDEALWEALAQV--GLAG--FEDVPVRQLSAGQQRRVALARLWLTRAP---LWILDEPFTAIDKQGV--ARLEA 170 (204)
T ss_pred HhcCccHHHHHHHHHHHc--CCHH--HhhCChhhcCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHHH
Confidence 0111111110 1110 0111124799999999999999998884 666 8999998877 77777
Q ss_pred Hhhc
Q 027090 160 FLGH 163 (228)
Q Consensus 160 ~~~~ 163 (228)
.+++
T Consensus 171 ~l~~ 174 (204)
T PRK13538 171 LLAQ 174 (204)
T ss_pred HHHH
Confidence 6665
No 470
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.23 E-value=2.8e-10 Score=96.25 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc---c------------------------c--ccCCCCCcceeeEeEeeeeeC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA---F------------------------K--ASAGSSGVTKTCEMKTTVLKD 67 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~---~------------------------~--~~~~~~~~t~~~~~~~~~~~~ 67 (228)
++..+++++|+.++|||||+-+|+-..- . . ........|.+....... .+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TT 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CC
Confidence 4558899999999999999987752110 0 0 001123455554444333 45
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCccccccE
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s------~~~~~~l~~~~~~~~~~~~~~~ 140 (228)
+..+.++||||. .++...+......+|++++|+++..+ +. ...++.+.++.. .+-+ ++
T Consensus 84 ~~~i~liDtPGh-----------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPGH-----------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QM 148 (447)
T ss_pred CEEEEEEECCCH-----------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cE
Confidence 678999999992 34555555555688999999999843 21 333444444433 3333 58
Q ss_pred EEEEeCCCCC
Q 027090 141 IVVFTGGDDL 150 (228)
Q Consensus 141 llv~~~~D~~ 150 (228)
++++||+|..
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8899999975
No 471
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=5.2e-11 Score=93.70 Aligned_cols=168 Identities=11% Similarity=0.072 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||+|||||+++|+|...+. .....+.+......... .........+.+.|.++. ....++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l 104 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNV 104 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHH
Confidence 3466799999999999999999999975420 00011222222111100 001122334556666544 2222211
Q ss_pred HHHH-----------HHHHhhccC--CccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 GKEI-----------VKCLGMAKD--GIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ~~~~-----------~~~~~~~~~--~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.-.. ...+..... +.+..+ ..-.....+|.++++++.++++++.++. +++ |++.+|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~---llllDEP~~~LD~~~ 181 (250)
T PRK14262 105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE---VILLDEPTSALDPIA 181 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC---EEEEeCCccccCHHH
Confidence 1000 000000000 010000 0111124799999999999999998884 555 899999987
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+.+.. +|....+...|+..+++.++.+..
T Consensus 182 ~--~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 182 T--QRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred H--HHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 7 78877776543 789988889999998988887643
No 472
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.7e-11 Score=105.70 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++.++..+| .++| |++++|.... ..+.+.+.++. +|++..+...|+..+++
T Consensus 395 ~~LSgGq~qrl~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLSEDM---KVILLDEPTRGIDVGAK--HEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred ccCCHHHHHHHHHHHHHccCC---CEEEEcCCCCCCCHhHH--HHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence 479999999999999998877 3666 9999999887 88877765432 79999999999999998
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 470 ~~g~i~ 475 (501)
T PRK11288 470 REGRIA 475 (501)
T ss_pred ECCEEE
Confidence 887654
No 473
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.22 E-value=5e-11 Score=91.98 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=91.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF---- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~---- 88 (228)
-.++..++|+|+||+|||||+++|+|...+..| .++........ .........+.+.|.+... ...+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~ 101 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG----SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG-TLRDNITLG 101 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC----eEEECCEEhHHCCHHHHHhhEEEeCCCCccccc-hHHHHhhcC
Confidence 356789999999999999999999998764444 22221111000 0000111223333332211 10000
Q ss_pred -------HHHHHHHHHhhc------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 89 -------VGKEIVKCLGMA------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 89 -------~~~~~~~~~~~~------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
...++...+... ..+.+.. +.+....+|.|+++++.++++++.+|. +++ |++.+|....
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~~~LSgG~~qrl~la~al~~~p~---llllDEPt~~LD~~~~ 176 (220)
T cd03245 102 APLADDERILRAAELAGVTDFVNKHPNGLDLQ--IGERGRGLSGGQRQAVALARALLNDPP---ILLLDEPTSAMDMNSE 176 (220)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhccccccce--ecCCCccCCHHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHHH
Confidence 001111111100 0011111 111224799999999999999998884 555 9999999887
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
..+.+.+.+.. +|....+ +.|+..+.+.++.+
T Consensus 177 --~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i 216 (220)
T cd03245 177 --ERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRI 216 (220)
T ss_pred --HHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeE
Confidence 88888777653 6777754 68887777777654
No 474
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=6.3e-11 Score=86.59 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.++..++|+|+||+|||||+++|.|...+..| .++. ++..+. .. . ...+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G----~i~~----------~~~~~~-----~~-~--------~~~~~-- 72 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG----EILI----------DGKDIA-----KL-P--------LEELR-- 72 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEE----------CCEEcc-----cC-C--------HHHHH--
Confidence 45579999999999999999999997642221 2211 111000 00 0 01111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC-------- 165 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~-------- 165 (228)
..+.++.+ +|.++++++.++.++...+ ++++ |++.+|.... ..+.+.+....
T Consensus 73 --------~~i~~~~q----lS~G~~~r~~l~~~l~~~~---~i~ilDEp~~~lD~~~~--~~l~~~l~~~~~~~~tii~ 135 (157)
T cd00267 73 --------RRIGYVPQ----LSGGQRQRVALARALLLNP---DLLLLDEPTSGLDPASR--ERLLELLRELAEEGRTVII 135 (157)
T ss_pred --------hceEEEee----CCHHHHHHHHHHHHHhcCC---CEEEEeCCCcCCCHHHH--HHHHHHHHHHHHCCCEEEE
Confidence 11223322 8999999999999998877 4555 8999998776 67766665421
Q ss_pred -CchHHHHHHhcCCeEEEee
Q 027090 166 -PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~ 184 (228)
+|....+...|+..+.+.+
T Consensus 136 ~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 136 VTHDPELAELAADRVIVLKD 155 (157)
T ss_pred EeCCHHHHHHhCCEEEEEeC
Confidence 5666666666665555543
No 475
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.22 E-value=2.7e-11 Score=106.44 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=97.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCc------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGS------ 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~------ 86 (228)
-+++.+++|+|++|+|||||++.|+|...+..| .+......... .........+.+.|.+++..-.+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G----~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 433 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG----RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC----EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC
Confidence 347789999999999999999999999775444 33322211110 00111223444555443322100
Q ss_pred -HHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 87 -EFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 87 -~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+...+++...+.. ...+.|..+ -+....+|+|++|++.++++++.++ ++++ |++.+|....
T Consensus 434 ~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEpts~LD~~t~- 507 (588)
T PRK13657 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEATSALDVETE- 507 (588)
T ss_pred CCCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH-
Confidence 0001222222111 112334332 2223579999999999999999888 5666 8899998877
Q ss_pred hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+.+.+.+.... +|.... .+.|+.++++.+|.+..
T Consensus 508 -~~i~~~l~~~~~~~tvIiitHr~~~-~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 508 -AKVKAALDELMKGRTTFIIAHRLST-VRNADRILVFDNGRVVE 549 (588)
T ss_pred -HHHHHHHHHHhcCCEEEEEEecHHH-HHhCCEEEEEECCEEEE
Confidence 77776666542 677754 57799998888887653
No 476
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.22 E-value=1.9e-11 Score=91.39 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH---H
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK---E 92 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~---~ 92 (228)
-.++.+++|+|+||+|||||++.|+|...+..| .+.. ++..+ ..+. ...... .
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G----~v~~----------~g~~~-----~~~~-----~~~~~~~i~~ 77 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG----EILL----------DGKDL-----ASLS-----PKELARKIAY 77 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEE----------CCEEC-----CcCC-----HHHHHHHHhH
Confidence 346789999999999999999999998653332 2221 11111 0000 000000 0
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---- 165 (228)
+...+... +... +.-.....+|.++++++.+++++..+|. +++ |++.+|.... ..+.+.+....
T Consensus 78 ~~q~l~~~--gl~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~~~~~l~~~~~~~~ 148 (180)
T cd03214 78 VPQALELL--GLAH--LADRPFNELSGGERQRVLLARALAQEPP---ILLLDEPTSHLDIAHQ--IELLELLRRLARERG 148 (180)
T ss_pred HHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHhcC
Confidence 00011110 1110 0111124799999999999999998884 666 9999998776 67766665431
Q ss_pred ------CchHHHHHHhcCCeEEEeeCCC
Q 027090 166 ------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 166 ------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
+|....+.+.|+..+++.++.+
T Consensus 149 ~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 149 KTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6788888888888877776653
No 477
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.22 E-value=7.4e-11 Score=103.31 Aligned_cols=167 Identities=19% Similarity=0.173 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-e--eeeCCcEEEEEeCCCCCC-----------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-T--VLKDGQVVNVIDTPGLFD----------- 81 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~iDtpG~~~----------- 81 (228)
-+++.+++++|++||||||+++.|.+...+..| .+..+..... . .......-.+.+.|-+++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G----~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~ 427 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG----EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----eEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence 567889999999999999999999998764443 3333111110 0 000011111222222221
Q ss_pred CCCCcHHHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 82 LSAGSEFVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
....++ ++.++.+.+ .++.|..+- ..+..+|+|++|++.++++++.++ |+++ +++.+|.
T Consensus 428 ~~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall~~~---~ILILDEaTSalD~ 498 (567)
T COG1132 428 PDATDE----EIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALLRNP---PILILDEATSALDT 498 (567)
T ss_pred CCCCHH----HHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHhcCC---CEEEEeccccccCH
Confidence 112222 333332211 113343332 334579999999999999999888 5666 8899998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (228)
..+ ..+.+.+.+.. .|.+..+.. |+.++++.+|++... ..-++|+.
T Consensus 499 ~tE--~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~----G~h~eLl~ 552 (567)
T COG1132 499 ETE--ALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER----GTHEELLA 552 (567)
T ss_pred HhH--HHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe----cCHHHHHH
Confidence 877 77777665321 677766655 999999999986544 44456654
No 478
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.1e-10 Score=103.32 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.++.+++.+|. ++| |+|++|.... .++.+++..+. +|+...+...|+.++.+.++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~---lLLLDEPtn~LD~~~~--~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSD---LLLLDEPTNHLDLDAV--IWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCC---EEEEcCCCCcCCHHHH--HHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 4799999999999999998884 555 9999999888 89999998765 89999999999999988887
Q ss_pred CC
Q 027090 186 KT 187 (228)
Q Consensus 186 ~~ 187 (228)
.+
T Consensus 223 ~i 224 (638)
T PRK10636 223 SL 224 (638)
T ss_pred EE
Confidence 65
No 479
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=4.2e-11 Score=95.82 Aligned_cols=161 Identities=19% Similarity=0.121 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG-- 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~-- 90 (228)
.++..++|+|+||+|||||+++|+|...+..+. .+.++........ .........+.+.|. +....+..+++.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~-~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~ 109 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-NSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG 109 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCC-CcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhh
Confidence 456799999999999999999999987643311 0122222211100 000111234444442 121111111110
Q ss_pred ------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 91 ------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 91 ------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
+.+...+... +... +.-.....+|.|+++++.++.+++.+|. +++ |++.+|.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LS~G~~qrv~laral~~~P~---llllDEPt~gLD~~~~--~ 180 (282)
T PRK13640 110 LENRAVPRPEMIKIVRDVLADV--GMLD--YIDSEPANLSGGQKQRVAIAGILAVEPK---IIILDESTSMLDPAGK--E 180 (282)
T ss_pred HHhCCCCHHHHHHHHHHHHHHC--CChh--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--H
Confidence 1111111111 1110 1111125799999999999999999884 666 8999998877 7
Q ss_pred hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+.+.+.... +|.+..+ ..|++.+++.++.+.
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLL 222 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 7766665431 6888877 579988888888754
No 480
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=9.9e-11 Score=93.29 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe-----eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT-----TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-.++.+++|+|+||+|||||+++|+|...+.. .+..+.++....... ..........+.+.|.++.. ...+++
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl 121 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENI 121 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHH
Confidence 35678999999999999999999999753210 001122222111110 00011122345555554432 211111
Q ss_pred HH-------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 90 GK-------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 90 ~~-------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.. .....+... +....+ ..-.....+|.|+++++.++++++.+|. ++| |++.+|...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~---lllLDEPt~~LD~~~ 196 (274)
T PRK14265 122 AFAPRANGYKGNLDELVEDSLRRA--AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPD---VLLMDEPCSALDPIS 196 (274)
T ss_pred HhHHHhcCchHHHHHHHHHHHHHc--ccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCC---EEEEeCCcccCCHHH
Confidence 00 000111100 000000 0111124799999999999999998884 555 999999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
. ..+.+.+.+.. +|+...+.+.|++.+++.
T Consensus 197 ~--~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 197 T--RQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred H--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 7 77777776553 789999999999888886
No 481
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.22 E-value=4e-11 Score=103.69 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+| .++| |++.+|.... +.+.+.++... +|++..+...|+..+++
T Consensus 408 ~~LSgGq~qrv~lAral~~~p---~lLlLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCP---EVIIFDEPTRGIDVGAK--AEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCC---CEEEECCCCCCcCHHHH--HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 479999999999999998877 3666 9999999877 78887776542 89999999999998888
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 483 ~~G~i~ 488 (510)
T PRK09700 483 CEGRLT 488 (510)
T ss_pred ECCEEE
Confidence 888754
No 482
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.22 E-value=1.3e-11 Score=106.61 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+| +++| |++.+|.... ..+.+.++++. +|++..+.+.|+..+++
T Consensus 402 ~~LSgG~kqrl~la~al~~~p---~lLlLDEPt~gLD~~~~--~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 402 RTLSGGNQQKVLIAKCLEASP---QLLIVDEPTRGVDVSAR--NDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred ccCCcHHHHHHHHHHHHhhCC---CEEEECCCCcCcChhHH--HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 479999999999999998887 3665 9999999887 88887776542 89999999999999999
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 477 ~~G~i~ 482 (510)
T PRK15439 477 HQGEIS 482 (510)
T ss_pred ECCEEE
Confidence 888654
No 483
>PLN03073 ABC transporter F family; Provisional
Probab=99.22 E-value=4.3e-11 Score=106.51 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC--CCCC-----------C
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP--GLFD-----------L 82 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp--G~~~-----------~ 82 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+..... ..+ .++.+.+ ++.- .
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G----~I~~~~~-~~i-------gyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTILKLISGELQPSSG----TVFRSAK-VRM-------AVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----eEEECCc-eeE-------EEEeccccccCCcchhHHHHHHHhc
Confidence 346679999999999999999999998765444 2221100 000 0111111 0000 0
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
....+ +.+...+... ++..- ........+|+|+++++.+++.++.+| +++| |+|++|.... ..+..
T Consensus 600 ~~~~~---~~i~~~L~~~--gl~~~-~~~~~~~~LSgGqkqRvaLAraL~~~p---~lLLLDEPT~~LD~~s~--~~l~~ 668 (718)
T PLN03073 600 PGVPE---QKLRAHLGSF--GVTGN-LALQPMYTLSGGQKSRVAFAKITFKKP---HILLLDEPSNHLDLDAV--EALIQ 668 (718)
T ss_pred CCCCH---HHHHHHHHHC--CCChH-HhcCCccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence 00000 1111222111 11100 011112479999999999999998887 4666 9999998877 77877
Q ss_pred HhhccC------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 160 FLGHEC------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+..+. +|+...+...|+..+++.++.+.
T Consensus 669 ~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 669 GLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 776543 89999999999999988887653
No 484
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.3e-11 Score=95.87 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=92.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH-
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~- 90 (228)
-.++..++|+|+||+|||||+++|+|...+.+| .+......... .........+.+.|. .....+..++..
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 107 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF 107 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHh
Confidence 356789999999999999999999998764444 22222211100 001111234444442 121111111110
Q ss_pred -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
..+...+... +.+. +.-.....+|.|+++++.++++++.+| ++++ |++.+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p---~lllLDEP~~gLD~~~~-- 178 (271)
T PRK13632 108 GLENKKVPPKKMKDIIDDLAKKV--GMED--YLDKEPQNLSGGQKQRVAIASVLALNP---EIIIFDESTSMLDPKGK-- 178 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHc--CCHH--HhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEeCCcccCCHHHH--
Confidence 0011111110 1110 111112579999999999999999888 4666 9999998876
Q ss_pred hhHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCc
Q 027090 155 KTLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 155 ~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+. . +|....+. .|+..+++.++.+.
T Consensus 179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 221 (271)
T PRK13632 179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI 221 (271)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE
Confidence 7777666543 1 67887774 78888888887754
No 485
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.22 E-value=4.9e-11 Score=103.99 Aligned_cols=150 Identities=14% Similarity=0.027 Sum_probs=91.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~---- 90 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+..... . ...++.+.+ .+....+..+.+.
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G----~i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG----TIKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe----EEEECCc-e-------EEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 356779999999999999999999998765444 2211000 0 011122221 1111111111100
Q ss_pred --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
......+... +.... ..-.....+|+|+++++.++++++.+| +++| |++++|.... ..+.+
T Consensus 413 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGe~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~ 484 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRF--NFKGS-DQQKKVGQLSGGERNRVHLAKTLKSGG---NVLLLDEPTNDLDVETL--RALEE 484 (552)
T ss_pred ccccCcchHHHHHHHHhC--CCChh-HhcCchhhCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHH--HHHHH
Confidence 0011111111 11100 011111579999999999999998888 4666 9999999888 88998
Q ss_pred HhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 160 FLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
.+.++. +|+...+...|+..+++.++
T Consensus 485 ~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 485 ALLEFAGCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred HHHHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 888764 89999999999988887653
No 486
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=7.5e-11 Score=93.35 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEe-----eeeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT-----TVLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-+++.+++|+|+||+|||||+++|+|...+... ...+.+........ ..........+.+.+.+.. ....++
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en 107 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN 107 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence 3456789999999999999999999998753200 01122222111100 0001111234455555443 222221
Q ss_pred HHH-----------HHHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 VGK-----------EIVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ~~~-----------~~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
... +............+. .+ ..-.....+|.|+++++.++++++.+| ++++ |++.+|..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~vllLDEP~~~LD~~ 184 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKP---KVLLMDEPCFGLDPI 184 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHH
Confidence 110 000000000001110 00 011112579999999999999999888 4666 89999988
Q ss_pred ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEee
Q 027090 151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~ 184 (228)
.. ..+.+.+... . +|+...+.+.|++++++.+
T Consensus 185 ~~--~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 185 AS--MKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HH--HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 77 7777766542 1 7999999999999988887
No 487
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.21 E-value=5e-11 Score=93.72 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=88.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC--CcHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEF----- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~----- 88 (228)
-+++.+++|+|+||+|||||+++|+|...+.+| .+.... ......+.+.|.+..... ..+.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G----~i~~~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~ 94 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG----VIKRNG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP 94 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECC--------ccCEEEeccccccccccChhHHHHHhccc
Confidence 346779999999999999999999998764444 111110 011122333333221100 0000
Q ss_pred --HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 89 --VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
..+++...+... +... +.-.....+|.|+++++.++.+++.+|. +++ |++.+|.... ..+.+.+.+
T Consensus 95 ~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD~~~~--~~l~~~L~~ 165 (251)
T PRK09544 95 GTKKEDILPALKRV--QAGH--LIDAPMQKLSGGETQRVLLARALLNRPQ---LLVLDEPTQGVDVNGQ--VALYDLIDQ 165 (251)
T ss_pred cccHHHHHHHHHHc--CChH--HHhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHHHHHHH
Confidence 001111111111 1110 0111124799999999999999988883 555 9999998876 777666643
Q ss_pred c----C------CchHHHHHHhcCCeEEEee
Q 027090 164 E----C------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 164 ~----~------~~~~~~~~~~~~~~~~~~~ 184 (228)
. . +|....+...|+..+++.+
T Consensus 166 ~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 166 LRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 2 1 7999999999998887744
No 488
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=92.11 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||+++|+|...+. .....+.+......... .........+.+.|.++.. ...++..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~ 108 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVA 108 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHH
Confidence 567799999999999999999999864311 00011222222111100 0011122455566655432 1111110
Q ss_pred ---------------HHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 91 ---------------KEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 91 ---------------~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
..+...+... .-.+.+. ..-.....+|.++++++.++++++.+|. +++ |++.+|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEP~~gLD~~~ 184 (253)
T PRK14261 109 YGPRIHGEKNKKTLDTIVEKSLKGA-ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE---VILMDEPCSALDPIA 184 (253)
T ss_pred hhHHhcCCCCHHHHHHHHHHHHHHh-cCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHH
Confidence 0011111100 0000000 0111124799999999999999998884 555 999999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.+.... +|....+.+.|++.+++.++.+.
T Consensus 185 ~--~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 185 T--AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred H--HHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 7 77777776543 78999998899988888888764
No 489
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.21 E-value=2e-11 Score=105.26 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+| +++| |++.+|.... ..+.+.++.+. +|++..+...|+..+++
T Consensus 394 ~~LSgGekqrv~lA~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRP---KVLILDEPTRGVDVGAK--KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCC---CEEEEcCCCCCCCHhHH--HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 579999999999999998887 4666 9999999877 77777776642 89999999999999999
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 469 ~~G~i~ 474 (501)
T PRK10762 469 HEGRIS 474 (501)
T ss_pred ECCEEE
Confidence 888754
No 490
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.21 E-value=3.6e-11 Score=104.86 Aligned_cols=152 Identities=13% Similarity=0.002 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~---- 90 (228)
-.++.+++|+|+||||||||+++|+|...+.+| .+..... . ...++.+.+ .+....+..+.+.
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G----~i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG----TIKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCc-e-------EEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 356679999999999999999999998765444 1111000 0 011222222 1211111111100
Q ss_pred --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
......+... ++... ..-.....+|+|+++++.++++++.+| +++| |++++|.... ..+.+
T Consensus 415 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~ 486 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRF--NFKGG-DQQKKVGVLSGGERNRLHLAKTLKQGG---NVLLLDEPTNDLDVETL--RALEE 486 (556)
T ss_pred cccccccHHHHHHHHHhC--CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence 0111111111 11000 011112479999999999999998888 4666 9999999888 88988
Q ss_pred HhhccC------CchHHHHHHhcCCeEEEee-CCC
Q 027090 160 FLGHEC------PKPLKEILQLCDNRCVLFD-NKT 187 (228)
Q Consensus 160 ~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~ 187 (228)
.+.++. +|++..+...|+.++++.+ +.+
T Consensus 487 ~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 487 ALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred HHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 888764 8999999999998888765 443
No 491
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=7.9e-11 Score=92.66 Aligned_cols=70 Identities=6% Similarity=0.119 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
..+|.|+++++.+++++..+|. +++ |++.+|.... ..+.+.+.+.. +|....+...|++.+++.
T Consensus 145 ~~LS~G~~qrv~laral~~~p~---lllLDEPt~~LD~~~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAVSPS---VLLMDEPASALDPIST--AKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFY 219 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 4799999999999999998884 555 9999998877 77777776543 789999989999999988
Q ss_pred eCCCcc
Q 027090 184 DNKTKD 189 (228)
Q Consensus 184 ~~~~~~ 189 (228)
++.+..
T Consensus 220 ~G~~~~ 225 (250)
T PRK14245 220 MGEMVE 225 (250)
T ss_pred CCEEEE
Confidence 887643
No 492
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.21 E-value=6.3e-11 Score=93.08 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=91.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--eeCCcEEEEEeCCCCCCCCCCc------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--LKDGQVVNVIDTPGLFDLSAGS------ 86 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~~~~~~~~~iDtpG~~~~~~~~------ 86 (228)
-.++.+++|+|+||+|||||+++|+|... .+| .+......... . .......++.+.|.+.......
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~ 93 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLP-GSG----SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLH 93 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCe----EEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhc
Confidence 35667999999999999999999999753 222 22221111000 0 0001112333333322111100
Q ss_pred -------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-------ccccccEEE---EEeCCCC
Q 027090 87 -------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG-------KNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 87 -------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~-------~~~~~~~ll---v~~~~D~ 149 (228)
....+.+...+... +... ..-.....+|.|+++++.++++++. ++ .+++ |++.+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p---~llllDEPt~~LD~ 166 (248)
T PRK03695 94 QPDKTRTEAVASALNEVAEAL--GLDD--KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG---QLLLLDEPMNSLDV 166 (248)
T ss_pred CccCCCcHHHHHHHHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC---CEEEEcCCcccCCH
Confidence 00001111122111 1110 1111125799999999999999985 33 3555 8899998
Q ss_pred CccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 150 LEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
... ..+.+.+.... +|.+..+...|+..+++.++.+.
T Consensus 167 ~~~--~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 167 AQQ--AALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred HHH--HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 877 77777766542 78999999999999999888764
No 493
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=6.5e-11 Score=96.45 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=98.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCC--CCCCCCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPG--LFDLSAG 85 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG--~~~~~~~ 85 (228)
..-.++..++|+|+||||||||+++|+|...+.+| .+.......... ........+.+-|. +......
T Consensus 36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G----~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v 111 (327)
T PRK11308 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG----ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKV 111 (327)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc----EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCH
Confidence 33456789999999999999999999998764433 222222111000 00112234444442 2211111
Q ss_pred cHHH---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090 86 SEFV---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG 147 (228)
Q Consensus 86 ~~~~---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~ 147 (228)
.+.+ .+....++... +.+.- ..-.....+|+|+++++.++.+++.+|. ++| |++.+
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~-~~~~~p~~LSgGq~QRv~iArAL~~~P~---lLilDEPts~L 185 (327)
T PRK11308 112 GQILEEPLLINTSLSAAERREKALAMMAKV--GLRPE-HYDRYPHMFSGGQRQRIAIARALMLDPD---VVVADEPVSAL 185 (327)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHC--CCChH-HhcCCCccCCHHHHHHHHHHHHHHcCCC---EEEEECCCccC
Confidence 1111 01111222211 11100 0111225799999999999999998884 666 89999
Q ss_pred CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
|.... .++.+.+.+.. +|++..+...|+.++++..+.+...
T Consensus 186 D~~~~--~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 186 DVSVQ--AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred CHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 98877 77777665432 7999999999999999998876543
No 494
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=91.96 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
.++..++|+|+||+|||||++.|+|...+..+ +..+.+......... .........+.+.|.+... ...++..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~ 106 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVA 106 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHh
Confidence 46779999999999999999999998764321 011222222111100 0011223455666655432 2211110
Q ss_pred H-----------HHHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 K-----------EIVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ~-----------~~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
- +....+.......... + +.-.....+|.++++++.++++++.+|. +++ |++.+|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 107 FGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE---VILMDEPCSALDPVST 183 (251)
T ss_pred hHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH
Confidence 0 0000000000000100 0 0111125799999999999999998884 555 9999998877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+.... +|....+...|++.+++.++.+..
T Consensus 184 --~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 184 --MRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred --HHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 77777776542 789999999999999998887643
No 495
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.20 E-value=6.7e-11 Score=93.23 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCV 181 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~ 181 (228)
..+|.|+++++.++++++.+| ++++ |++.+|.... ..+.+.+.+. . +|....+...|+..++
T Consensus 147 ~~LSgG~~qrv~laral~~~p---~vlllDEP~~~LD~~~~--~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~ 221 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRP---RLVFMDEPTGGLDVSVQ--ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV 221 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 479999999999999999888 4666 9999998877 7776665442 1 7899988889998888
Q ss_pred EeeCCCc
Q 027090 182 LFDNKTK 188 (228)
Q Consensus 182 ~~~~~~~ 188 (228)
+.++.+.
T Consensus 222 l~~G~i~ 228 (253)
T TIGR02323 222 MQQGRVV 228 (253)
T ss_pred EECCEEE
Confidence 8888764
No 496
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3e-11 Score=106.59 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=98.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCC--CCCCCCCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTP--GLFDLSAG 85 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtp--G~~~~~~~ 85 (228)
..-.++.+++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.| .+......
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv 420 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG----EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV 420 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc----EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCH
Confidence 34457789999999999999999999998765444 22221111100 0 0011123344444 23322222
Q ss_pred cHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090 86 SEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG 147 (228)
Q Consensus 86 ~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~ 147 (228)
.+.+.. .+...+... +...- +.-.....+|+|+++++.++++++.+|. ++| |++.+
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--gL~~~-~~~~~~~~LSgGqrQRv~iAraL~~~p~---llllDEPts~L 494 (623)
T PRK10261 421 GDSIMEPLRVHGLLPGKAAAARVAWLLERV--GLLPE-HAWRYPHEFSGGQRQRICIARALALNPK---VIIADEAVSAL 494 (623)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--CCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccC
Confidence 221110 011111111 11000 0111125799999999999999998884 666 99999
Q ss_pred CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
|.... ..+.+.++.+. +|++..+...|+.++++.++++.
T Consensus 495 D~~~~--~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 495 DVSIR--GQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred CHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99877 78777774432 79999999999999999888764
No 497
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=5.4e-11 Score=94.87 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
+++..++|+|+||+|||||+++|+|...+..+ ...+.+......... .........+.+.|.++. ....+++.-
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~ 123 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLA 123 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHH
Confidence 46779999999999999999999998653211 112222222111100 001112234455555443 221211100
Q ss_pred -----------HHHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 92 -----------EIVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 92 -----------~~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
+............+. .+ ..-.....+|.++++++.+++++..+| +++| |++.+|....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p---~lllLDEPt~~LD~~~~- 199 (276)
T PRK14271 124 GVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNP---EVLLLDEPTSALDPTTT- 199 (276)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence 000000000001111 00 001112479999999999999998888 3665 9999998876
Q ss_pred hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.+.. +|....+.+.|++.+++.++.+.
T Consensus 200 -~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 200 -EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred -HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 77777666542 78999999999999888888764
No 498
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.20 E-value=9.7e-11 Score=98.41 Aligned_cols=179 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee----CCcEEEEEeCCCCC---------
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLF--------- 80 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG~~--------- 80 (228)
..-.++...+|+|.||+|||||++.|+|...+.+| .+..+......... ......+.+.+.+.
T Consensus 29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G----~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNi 104 (500)
T COG1129 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENI 104 (500)
T ss_pred eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc----eEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHh
Confidence 34456789999999999999999999999875555 33333222211000 01111222221111
Q ss_pred ---CCCC-----C-cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 81 ---DLSA-----G-SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 81 ---~~~~-----~-~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
.... . .....+.....+... +.+ +-.-..+ ..+|.+++|.+++++++..+.. +++ |.+-++
T Consensus 105 fLgre~~~~~g~id~~~m~~~A~~~l~~l--g~~-~~~~~~v-~~LsiaqrQ~VeIArAl~~~ar---llIlDEPTaaLt 177 (500)
T COG1129 105 FLGREPTRRFGLIDRKAMRRRARELLARL--GLD-IDPDTLV-GDLSIAQRQMVEIARALSFDAR---VLILDEPTAALT 177 (500)
T ss_pred hcccccccCCCccCHHHHHHHHHHHHHHc--CCC-CChhhhh-hhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCC
Confidence 1110 0 111111122222211 111 0111111 5899999999999999977653 555 777777
Q ss_pred CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccccc--chHHHHHHHHHHH
Q 027090 149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDEAK--GTEQVRQLLSLVN 205 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~i~ 205 (228)
..+. +.+.+.+++++ +|.++++.+.|+++.++.+|....... .....+++.+.+.
T Consensus 178 ~~E~--~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 178 VKET--ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMV 243 (500)
T ss_pred HHHH--HHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhh
Confidence 7666 77777777766 999999999999999999997543322 3455666666554
No 499
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.20 E-value=2.1e-11 Score=104.93 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eee--eeCCcEEEEEeCCCCCC--------C
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTV--LKDGQVVNVIDTPGLFD--------L 82 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~iDtpG~~~--------~ 82 (228)
..-.++..++|+|+||||||||+++|+|...+.+|. +....... ... ........+.+.|.+.. .
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 99 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE----RQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTG 99 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce----EEECCcccccCCHHHHHHHhceeccCcchhhcccchhhcc
Confidence 344567899999999999999999999987654442 21111000 000 00000112222222100 0
Q ss_pred CCCcHH------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 83 SAGSEF------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 83 ~~~~~~------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
....+. ..+.+...+... +... +.-.....+|+|+++++.++.+++.+|. +++ |++.+|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~~~~- 171 (490)
T PRK10938 100 RTTAEIIQDEVKDPARCEQLAQQF--GITA--LLDRRFKYLSTGETRKTLLCQALMSEPD---LLILDEPFDGLDVASR- 171 (490)
T ss_pred ccHHHhcccchhHHHHHHHHHHHc--CCHh--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH-
Confidence 000000 001111122111 1111 1111225899999999999999998884 555 9999999877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.++.+.+.++. +|++..+.+.|+..+++.++.+.
T Consensus 172 -~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 172 -QQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred -HHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 78887776642 79999999999999999888754
No 500
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.5e-11 Score=100.62 Aligned_cols=167 Identities=18% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC---Cc-EEEEEeCCC----------CC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQ-VVNVIDTPG----------LF 80 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~-~~~~iDtpG----------~~ 80 (228)
.-+++.+|+|+|+|||||||++++|++-.. .+ +.+.++.........+ +. -..-.|++= ++
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~s----G~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YG 448 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YS----GSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYG 448 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cC----CcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcC
Confidence 346788999999999999999999986432 12 2222222111100000 10 112223332 23
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEE---------eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVF---------SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~---------~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
......++..+...+ + +.|..+.-+ .-...+|+|++|++.++++++.++ |+++ +.+++|
T Consensus 449 n~sas~eeV~e~~k~----a--~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 449 NPSASDEEVVEACKR----A--GLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALD 519 (591)
T ss_pred CCCcCHHHHHHHHHH----c--CcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccc
Confidence 333333333222222 1 223333222 112579999999999999999888 6777 889999
Q ss_pred CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090 149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (228)
...+ .++.+.+...- .|.. +++..|+.++++.+|.+... ..-+||+.
T Consensus 520 ~~TE--~~i~~~i~~~~~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~----gth~ell~ 574 (591)
T KOG0057|consen 520 SETE--REILDMIMDVMSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEY----GTHSELLA 574 (591)
T ss_pred hhhH--HHHHHHHHHhcCCCeEEEEEecc-hhHhcCCEEEEEECCeeEEe----ccHHHHhh
Confidence 8877 77777776622 3444 45678999999999987654 44566655
Done!