Query 027090
Match_columns 228
No_of_seqs 127 out of 1884
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 2.2E-27 7.7E-32 185.1 19.9 204 16-225 18-223 (247)
2 3lxx_A GTPase IMAP family memb 100.0 3E-27 1E-31 183.6 20.2 205 15-225 25-229 (239)
3 2xtp_A GTPase IMAP family memb 99.9 1.6E-23 5.5E-28 164.5 23.7 205 14-224 17-222 (260)
4 1wf3_A GTP-binding protein; GT 99.9 1.8E-20 6E-25 149.9 15.6 166 19-210 7-173 (301)
5 3iev_A GTP-binding protein ERA 99.8 1.8E-20 6.2E-25 150.5 14.9 176 14-211 5-183 (308)
6 4dhe_A Probable GTP-binding pr 99.8 6.3E-20 2.1E-24 140.5 16.0 180 16-212 26-213 (223)
7 1svi_A GTP-binding protein YSX 99.8 2.5E-18 8.6E-23 128.7 17.5 172 16-209 20-194 (195)
8 3pqc_A Probable GTP-binding pr 99.8 3.2E-18 1.1E-22 127.9 17.4 173 15-210 19-194 (195)
9 3def_A T7I23.11 protein; chlor 99.8 1.8E-18 6.3E-23 135.8 15.6 142 18-163 35-177 (262)
10 1h65_A Chloroplast outer envel 99.8 9.7E-18 3.3E-22 132.2 19.2 200 18-222 38-257 (270)
11 2qu8_A Putative nucleolar GTP- 99.8 1.3E-17 4.3E-22 128.3 18.0 184 12-210 22-205 (228)
12 4bas_A ADP-ribosylation factor 99.8 2.6E-17 9.1E-22 123.4 16.5 175 12-212 10-191 (199)
13 1ega_A Protein (GTP-binding pr 99.8 2.2E-18 7.4E-23 137.9 10.9 166 19-210 8-175 (301)
14 2gj8_A MNME, tRNA modification 99.8 1.4E-18 4.9E-23 127.9 9.1 164 18-210 3-166 (172)
15 3t5d_A Septin-7; GTP-binding p 99.8 4E-17 1.4E-21 129.0 15.9 174 17-210 6-204 (274)
16 2dyk_A GTP-binding protein; GT 99.7 3.2E-17 1.1E-21 118.8 13.8 159 20-208 2-160 (161)
17 2lkc_A Translation initiation 99.7 1.8E-16 6.2E-21 116.7 17.3 168 16-211 5-172 (178)
18 1upt_A ARL1, ADP-ribosylation 99.7 7E-17 2.4E-21 118.1 15.0 164 17-210 5-169 (171)
19 3reg_A RHO-like small GTPase; 99.7 1.4E-17 4.9E-22 124.7 11.3 168 15-212 19-190 (194)
20 3iby_A Ferrous iron transport 99.7 7.5E-18 2.6E-22 131.8 9.9 161 20-207 2-164 (256)
21 2j1l_A RHO-related GTP-binding 99.7 5.2E-17 1.8E-21 123.6 14.2 171 17-212 32-211 (214)
22 1ksh_A ARF-like protein 2; sma 99.7 1.5E-16 5.2E-21 118.2 16.3 165 17-211 16-181 (186)
23 3tw8_B RAS-related protein RAB 99.7 2.4E-17 8.4E-22 121.6 11.9 163 16-210 6-171 (181)
24 4dsu_A GTPase KRAS, isoform 2B 99.7 9.8E-17 3.4E-21 119.2 15.0 161 18-210 3-166 (189)
25 1z08_A RAS-related protein RAB 99.7 6.1E-17 2.1E-21 118.3 13.4 162 18-210 5-169 (170)
26 1kao_A RAP2A; GTP-binding prot 99.7 2.5E-16 8.6E-21 114.4 16.1 161 19-210 3-166 (167)
27 3t5g_A GTP-binding protein RHE 99.7 2.8E-16 9.6E-21 116.1 16.2 166 17-213 4-172 (181)
28 1mky_A Probable GTP-binding pr 99.7 5.8E-17 2E-21 136.2 13.9 166 20-211 2-167 (439)
29 1zd9_A ADP-ribosylation factor 99.7 7.3E-17 2.5E-21 120.3 13.0 165 17-210 20-185 (188)
30 3con_A GTPase NRAS; structural 99.7 1.3E-16 4.5E-21 118.9 14.4 162 18-211 20-184 (190)
31 1ky3_A GTP-binding protein YPT 99.7 6E-17 2.1E-21 119.6 12.0 170 16-211 5-179 (182)
32 2il1_A RAB12; G-protein, GDP, 99.7 1.6E-16 5.4E-21 118.9 14.4 167 14-210 21-190 (192)
33 3oes_A GTPase rhebl1; small GT 99.7 2.8E-16 9.6E-21 118.3 15.7 167 15-212 20-189 (201)
34 2gf9_A RAS-related protein RAB 99.7 2.5E-16 8.5E-21 117.4 15.1 168 14-211 17-186 (189)
35 3i8s_A Ferrous iron transport 99.7 4.6E-17 1.6E-21 128.6 11.4 166 19-211 3-170 (274)
36 2g6b_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 117.9 13.0 165 17-211 8-175 (180)
37 2q3h_A RAS homolog gene family 99.7 5.8E-16 2E-20 116.4 16.8 172 14-210 15-195 (201)
38 3k53_A Ferrous iron transport 99.7 8.5E-17 2.9E-21 126.9 12.7 166 19-212 3-168 (271)
39 2hjg_A GTP-binding protein ENG 99.7 2.2E-17 7.5E-22 138.6 9.8 177 18-212 174-351 (436)
40 3tkl_A RAS-related protein RAB 99.7 1.1E-16 3.7E-21 119.8 12.6 165 17-212 14-181 (196)
41 1z0f_A RAB14, member RAS oncog 99.7 3.6E-17 1.2E-21 120.5 9.8 163 17-210 13-178 (179)
42 2nzj_A GTP-binding protein REM 99.7 2.8E-16 9.7E-21 115.3 14.5 164 18-210 3-169 (175)
43 3q72_A GTP-binding protein RAD 99.7 2E-16 6.8E-21 115.2 13.6 162 19-210 2-164 (166)
44 1wms_A RAB-9, RAB9, RAS-relate 99.7 9.6E-17 3.3E-21 118.1 11.9 166 17-211 5-175 (177)
45 2gco_A H9, RHO-related GTP-bin 99.7 1.2E-16 4.1E-21 120.4 12.7 170 15-209 21-199 (201)
46 1lnz_A SPO0B-associated GTP-bi 99.7 2.5E-17 8.4E-22 133.6 9.3 174 21-218 160-338 (342)
47 1g16_A RAS-related protein SEC 99.7 2.5E-17 8.7E-22 120.3 8.6 161 19-211 3-166 (170)
48 4dcu_A GTP-binding protein ENG 99.7 4.4E-17 1.5E-21 137.5 11.3 180 16-213 192-372 (456)
49 4gzl_A RAS-related C3 botulinu 99.7 4.4E-17 1.5E-21 123.1 10.1 167 16-207 27-202 (204)
50 2fn4_A P23, RAS-related protei 99.7 6E-16 2.1E-20 114.0 16.0 168 14-212 4-174 (181)
51 3q3j_B RHO-related GTP-binding 99.7 1.1E-16 3.8E-21 121.9 12.2 174 13-211 21-204 (214)
52 2bme_A RAB4A, RAS-related prot 99.7 2.3E-16 7.9E-21 117.0 13.7 163 17-210 8-173 (186)
53 2ce2_X GTPase HRAS; signaling 99.7 6.8E-16 2.3E-20 111.9 15.9 159 20-210 4-165 (166)
54 3c5c_A RAS-like protein 12; GD 99.7 2.4E-16 8.2E-21 117.5 13.5 165 15-210 17-186 (187)
55 3cph_A RAS-related protein SEC 99.7 5.7E-17 2E-21 123.0 10.3 164 15-210 16-182 (213)
56 2efe_B Small GTP-binding prote 99.7 7.1E-17 2.4E-21 119.2 10.5 164 17-210 10-175 (181)
57 1zj6_A ADP-ribosylation factor 99.7 2.5E-16 8.6E-21 117.2 13.5 163 17-212 14-180 (187)
58 2fg5_A RAB-22B, RAS-related pr 99.7 4.2E-17 1.4E-21 122.0 9.3 165 16-210 20-186 (192)
59 3gee_A MNME, tRNA modification 99.7 1.1E-16 3.8E-21 135.1 12.8 165 19-209 233-397 (476)
60 2wjg_A FEOB, ferrous iron tran 99.7 1.8E-16 6.2E-21 117.8 12.7 166 18-213 6-172 (188)
61 2hup_A RAS-related protein RAB 99.7 1.5E-16 5E-21 120.0 12.2 168 17-214 27-197 (201)
62 1zbd_A Rabphilin-3A; G protein 99.7 1.8E-16 6.3E-21 119.4 12.7 162 19-210 8-171 (203)
63 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.8E-16 6.1E-21 117.5 12.4 169 18-211 4-181 (186)
64 1r2q_A RAS-related protein RAB 99.7 5.9E-17 2E-21 118.2 9.5 161 19-209 6-168 (170)
65 3bc1_A RAS-related protein RAB 99.7 2.7E-16 9.1E-21 117.3 13.3 164 17-210 9-185 (195)
66 4djt_A GTP-binding nuclear pro 99.7 1.1E-17 3.7E-22 127.6 5.7 169 17-215 9-180 (218)
67 1u8z_A RAS-related protein RAL 99.7 4.7E-16 1.6E-20 113.1 14.2 161 19-210 4-167 (168)
68 1r8s_A ADP-ribosylation factor 99.7 3E-16 1E-20 114.0 13.1 160 21-210 2-162 (164)
69 1z0j_A RAB-22, RAS-related pro 99.7 8.3E-17 2.9E-21 117.5 10.1 161 19-209 6-168 (170)
70 2ew1_A RAS-related protein RAB 99.7 1.8E-16 6.1E-21 119.6 12.1 161 19-210 26-189 (201)
71 2h57_A ADP-ribosylation factor 99.7 2.3E-16 7.8E-21 117.7 12.6 167 14-210 16-187 (190)
72 3a1s_A Iron(II) transport prot 99.7 1.2E-16 4.3E-21 125.0 11.4 163 19-210 5-167 (258)
73 3dz8_A RAS-related protein RAB 99.7 7.8E-17 2.7E-21 120.4 9.8 165 17-211 21-187 (191)
74 1z06_A RAS-related protein RAB 99.7 1.4E-16 4.9E-21 118.7 11.2 166 15-210 16-188 (189)
75 2atx_A Small GTP binding prote 99.7 4.7E-16 1.6E-20 116.3 14.0 168 17-209 16-192 (194)
76 3kkq_A RAS-related protein M-R 99.7 8.6E-16 2.9E-20 113.7 15.1 167 13-210 12-182 (183)
77 2bcg_Y Protein YP2, GTP-bindin 99.7 1.8E-16 6.2E-21 119.7 11.6 163 18-211 7-172 (206)
78 1c1y_A RAS-related protein RAP 99.7 7.1E-16 2.4E-20 112.2 14.3 160 19-208 3-165 (167)
79 2bov_A RAla, RAS-related prote 99.7 2.6E-15 9E-20 113.1 17.9 165 15-210 10-177 (206)
80 2gf0_A GTP-binding protein DI- 99.7 1.1E-16 3.8E-21 120.0 10.1 164 17-211 6-172 (199)
81 2erx_A GTP-binding protein DI- 99.7 4.9E-16 1.7E-20 113.5 13.3 162 19-210 3-167 (172)
82 1vg8_A RAS-related protein RAB 99.7 9.9E-17 3.4E-21 121.1 9.8 167 16-210 5-175 (207)
83 2wji_A Ferrous iron transport 99.7 1.6E-16 5.4E-21 116.0 10.3 159 20-208 4-163 (165)
84 2oil_A CATX-8, RAS-related pro 99.7 4.1E-16 1.4E-20 116.5 12.9 164 17-210 23-188 (193)
85 2x77_A ADP-ribosylation factor 99.7 9.3E-16 3.2E-20 114.2 14.5 165 17-211 20-185 (189)
86 2fv8_A H6, RHO-related GTP-bin 99.7 2E-16 6.7E-21 119.8 10.9 168 18-210 24-200 (207)
87 1z2a_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 116.4 9.4 160 18-210 4-167 (168)
88 2p5s_A RAS and EF-hand domain 99.7 3.8E-16 1.3E-20 117.4 12.3 170 16-210 25-197 (199)
89 1m7b_A RND3/RHOE small GTP-bin 99.7 3.5E-16 1.2E-20 116.1 11.9 169 17-209 5-182 (184)
90 3llu_A RAS-related GTP-binding 99.7 2.9E-15 9.8E-20 112.4 16.8 181 12-207 13-194 (196)
91 2fh5_B SR-beta, signal recogni 99.7 1.2E-15 4.3E-20 115.8 14.9 119 17-152 5-130 (214)
92 3ihw_A Centg3; RAS, centaurin, 99.7 7.2E-16 2.5E-20 114.6 13.2 164 14-211 15-181 (184)
93 1ek0_A Protein (GTP-binding pr 99.7 6.4E-17 2.2E-21 118.0 7.4 161 20-208 4-167 (170)
94 2a9k_A RAS-related protein RAL 99.7 2.9E-15 9.8E-20 110.9 16.5 163 17-210 16-181 (187)
95 4dkx_A RAS-related protein RAB 99.7 1.5E-16 5E-21 121.3 9.5 161 18-210 12-176 (216)
96 2b6h_A ADP-ribosylation factor 99.7 3.7E-16 1.3E-20 116.9 11.6 165 16-210 26-191 (192)
97 1gwn_A RHO-related GTP-binding 99.7 4E-16 1.4E-20 118.0 11.9 173 13-209 22-203 (205)
98 2h17_A ADP-ribosylation factor 99.7 3E-16 1E-20 116.2 10.8 162 14-206 16-179 (181)
99 3clv_A RAB5 protein, putative; 99.7 1.6E-15 5.4E-20 113.9 15.0 160 17-210 5-204 (208)
100 3bwd_D RAC-like GTP-binding pr 99.7 6E-17 2E-21 119.7 7.0 169 16-209 5-180 (182)
101 2fu5_C RAS-related protein RAB 99.7 2.4E-16 8.1E-21 116.7 10.1 162 18-210 7-171 (183)
102 4dcu_A GTP-binding protein ENG 99.7 5.8E-17 2E-21 136.8 7.6 164 19-211 23-186 (456)
103 2e87_A Hypothetical protein PH 99.7 3.5E-15 1.2E-19 122.1 17.9 170 17-211 165-337 (357)
104 2o52_A RAS-related protein RAB 99.7 5E-16 1.7E-20 116.9 11.9 163 17-210 23-188 (200)
105 2hjg_A GTP-binding protein ENG 99.7 6.8E-17 2.3E-21 135.6 7.7 163 20-211 4-166 (436)
106 2atv_A RERG, RAS-like estrogen 99.7 1.5E-15 5.1E-20 113.8 14.2 171 8-210 16-191 (196)
107 2a5j_A RAS-related protein RAB 99.7 3.8E-16 1.3E-20 116.6 10.8 163 17-210 19-184 (191)
108 1moz_A ARL1, ADP-ribosylation 99.7 2.1E-16 7.1E-21 117.0 9.3 164 17-210 16-180 (183)
109 3q85_A GTP-binding protein REM 99.7 6.4E-16 2.2E-20 112.8 11.8 162 20-210 3-167 (169)
110 3b1v_A Ferrous iron uptake tra 99.7 3.7E-16 1.3E-20 123.1 11.0 162 19-211 3-165 (272)
111 1x3s_A RAS-related protein RAB 99.7 1.8E-16 6.3E-21 118.4 8.8 164 18-211 14-179 (195)
112 2hxs_A RAB-26, RAS-related pro 99.7 6.5E-16 2.2E-20 113.7 11.5 166 17-211 4-174 (178)
113 3qq5_A Small GTP-binding prote 99.7 1.1E-16 3.7E-21 133.1 8.0 172 15-215 30-201 (423)
114 1fzq_A ADP-ribosylation factor 99.7 8.5E-16 2.9E-20 113.8 12.0 164 17-210 14-178 (181)
115 3geh_A MNME, tRNA modification 99.7 7.8E-17 2.7E-21 135.6 6.8 163 18-211 223-385 (462)
116 1mky_A Probable GTP-binding pr 99.7 7.6E-16 2.6E-20 129.4 12.8 174 18-212 179-357 (439)
117 2cxx_A Probable GTP-binding pr 99.7 1.7E-15 5.9E-20 112.6 13.1 169 20-212 2-186 (190)
118 2yc2_C IFT27, small RAB-relate 99.7 3.3E-16 1.1E-20 118.2 9.2 163 17-210 18-192 (208)
119 1wb1_A Translation elongation 99.7 2.7E-15 9.1E-20 127.2 15.7 166 18-210 18-189 (482)
120 2j0v_A RAC-like GTP-binding pr 99.7 2.2E-16 7.6E-21 119.8 7.9 171 17-212 7-182 (212)
121 2y8e_A RAB-protein 6, GH09086P 99.7 4.6E-16 1.6E-20 114.5 9.2 161 19-210 14-177 (179)
122 3t1o_A Gliding protein MGLA; G 99.6 1.2E-15 3.9E-20 114.1 11.4 169 16-211 11-193 (198)
123 3sjy_A Translation initiation 99.6 1E-15 3.5E-20 127.2 11.7 170 17-211 6-193 (403)
124 2iwr_A Centaurin gamma 1; ANK 99.6 7.5E-15 2.5E-19 108.1 15.2 161 17-210 5-169 (178)
125 1m2o_B GTP-binding protein SAR 99.6 1.3E-15 4.4E-20 113.8 10.9 166 17-206 21-188 (190)
126 3o47_A ADP-ribosylation factor 99.6 2.3E-15 7.9E-20 121.8 13.1 163 18-210 164-327 (329)
127 1f6b_A SAR1; gtpases, N-termin 99.6 3E-15 1E-19 112.5 12.8 169 17-207 23-196 (198)
128 3cbq_A GTP-binding protein REM 99.6 2.2E-15 7.4E-20 113.1 11.8 169 14-211 18-189 (195)
129 3cpj_B GTP-binding protein YPT 99.6 1E-15 3.6E-20 117.1 10.1 163 18-211 12-177 (223)
130 1s0u_A EIF-2-gamma, translatio 99.6 5.1E-15 1.7E-19 123.2 14.9 171 15-210 4-198 (408)
131 3lvq_E ARF-GAP with SH3 domain 99.6 1E-15 3.6E-20 130.5 10.5 173 17-219 320-493 (497)
132 2f7s_A C25KG, RAS-related prot 99.6 3.1E-15 1.1E-19 113.8 12.0 160 19-210 25-199 (217)
133 1xzp_A Probable tRNA modificat 99.6 8.6E-16 2.9E-20 129.8 9.7 160 19-209 243-404 (482)
134 1kk1_A EIF2gamma; initiation o 99.6 5E-15 1.7E-19 123.4 14.0 170 16-210 7-200 (410)
135 1pui_A ENGB, probable GTP-bind 99.6 2.6E-14 8.9E-19 108.1 16.7 174 15-210 22-199 (210)
136 2zej_A Dardarin, leucine-rich 99.6 2.6E-15 8.9E-20 111.5 10.9 169 20-211 3-179 (184)
137 2g3y_A GTP-binding protein GEM 99.6 2.4E-14 8.3E-19 108.7 16.3 164 18-210 36-203 (211)
138 3th5_A RAS-related C3 botulinu 99.4 2.8E-17 9.6E-22 124.1 0.0 169 17-207 28-202 (204)
139 2qtf_A Protein HFLX, GTP-bindi 99.6 2.4E-14 8.1E-19 117.2 17.3 174 20-213 180-357 (364)
140 3gj0_A GTP-binding nuclear pro 99.6 5.5E-16 1.9E-20 118.4 6.4 166 15-212 11-177 (221)
141 3r7w_A Gtpase1, GTP-binding pr 99.6 9.5E-15 3.2E-19 117.1 13.5 127 18-152 2-130 (307)
142 3l0i_B RAS-related protein RAB 99.6 2.3E-17 8E-22 124.1 -2.0 163 17-210 31-196 (199)
143 3j2k_7 ERF3, eukaryotic polype 99.6 1.8E-14 6.3E-19 120.8 14.6 122 14-151 12-169 (439)
144 1d2e_A Elongation factor TU (E 99.6 5.5E-14 1.9E-18 116.6 15.5 170 18-210 2-195 (397)
145 1udx_A The GTP-binding protein 99.6 7.9E-15 2.7E-19 121.6 10.4 167 19-213 157-328 (416)
146 1jwy_B Dynamin A GTPase domain 99.6 2.4E-14 8.3E-19 115.1 12.6 126 68-211 130-263 (315)
147 2wkq_A NPH1-1, RAS-related C3 99.6 9.1E-15 3.1E-19 118.1 10.0 168 18-210 154-330 (332)
148 3tr5_A RF-3, peptide chain rel 99.6 2.6E-14 8.8E-19 122.1 12.9 118 18-152 12-149 (528)
149 2c78_A Elongation factor TU-A; 99.6 4.5E-14 1.5E-18 117.4 13.0 170 16-210 8-212 (405)
150 2f9l_A RAB11B, member RAS onco 99.5 4.3E-14 1.5E-18 106.2 11.4 161 19-210 5-168 (199)
151 2elf_A Protein translation elo 99.5 7.6E-14 2.6E-18 114.4 13.5 151 21-210 23-180 (370)
152 2ged_A SR-beta, signal recogni 99.5 2.7E-14 9.3E-19 106.5 9.9 130 17-162 46-179 (193)
153 2qag_A Septin-2, protein NEDD5 99.5 2E-13 6.7E-18 111.8 15.7 134 19-160 37-195 (361)
154 2aka_B Dynamin-1; fusion prote 99.5 7.3E-14 2.5E-18 111.4 12.6 173 17-206 24-249 (299)
155 3p26_A Elongation factor 1 alp 99.5 6.6E-14 2.3E-18 118.9 12.9 118 18-151 32-185 (483)
156 1nrj_B SR-beta, signal recogni 99.5 1.3E-13 4.3E-18 104.9 12.6 122 17-152 10-135 (218)
157 3t34_A Dynamin-related protein 99.5 9.9E-14 3.4E-18 113.6 12.1 128 20-152 35-218 (360)
158 2j69_A Bacterial dynamin-like 99.5 3.4E-14 1.2E-18 125.3 9.9 121 18-152 68-245 (695)
159 1zun_B Sulfate adenylate trans 99.5 1.9E-13 6.5E-18 114.6 13.8 159 17-199 22-213 (434)
160 3izy_P Translation initiation 99.5 4.2E-16 1.4E-20 132.8 -3.3 164 20-210 5-168 (537)
161 2cjw_A GTP-binding protein GEM 99.5 1.1E-13 3.9E-18 103.3 10.4 163 19-210 6-172 (192)
162 1oix_A RAS-related protein RAB 99.5 1.3E-12 4.5E-17 97.4 15.5 159 19-208 29-190 (191)
163 2qpt_A EH domain-containing pr 99.5 6.8E-14 2.3E-18 120.2 9.5 140 17-163 63-242 (550)
164 3zvr_A Dynamin-1; hydrolase, D 99.5 1.5E-13 5E-18 121.0 11.7 171 20-210 52-281 (772)
165 4a9a_A Ribosome-interacting GT 99.5 1.3E-13 4.6E-18 112.6 10.4 123 18-149 71-194 (376)
166 2x2e_A Dynamin-1; nitration, h 99.5 2.6E-13 8.9E-18 110.8 11.8 170 20-206 32-254 (353)
167 2qag_C Septin-7; cell cycle, c 99.5 9.2E-13 3.2E-17 109.3 14.5 171 17-206 29-223 (418)
168 3avx_A Elongation factor TS, e 99.5 2.8E-12 9.7E-17 116.5 17.9 169 15-210 292-486 (1289)
169 1g7s_A Translation initiation 99.5 6.6E-13 2.3E-17 114.8 13.1 114 20-151 6-136 (594)
170 3tui_C Methionine import ATP-b 99.5 1.6E-14 5.4E-19 117.4 2.4 162 15-189 50-244 (366)
171 3cb4_D GTP-binding protein LEP 99.4 8.8E-13 3E-17 114.0 12.9 164 18-211 3-183 (599)
172 3dpu_A RAB family protein; roc 99.4 5.2E-13 1.8E-17 114.8 11.5 161 16-211 38-209 (535)
173 3rlf_A Maltose/maltodextrin im 99.4 1.6E-14 5.5E-19 118.0 1.8 162 16-190 26-215 (381)
174 2ywe_A GTP-binding protein LEP 99.4 1.2E-12 4.2E-17 113.0 13.5 164 18-211 5-185 (600)
175 3sop_A Neuronal-specific septi 99.4 1.2E-12 4E-17 102.9 12.3 137 19-163 2-164 (270)
176 2olj_A Amino acid ABC transpor 99.4 1.2E-14 4E-19 113.8 0.8 160 16-188 47-238 (263)
177 1b0u_A Histidine permease; ABC 99.4 1.8E-14 6.2E-19 112.8 1.8 161 16-188 29-232 (262)
178 3fvq_A Fe(3+) IONS import ATP- 99.4 2.6E-14 9E-19 116.0 2.6 162 16-190 27-220 (359)
179 2qnr_A Septin-2, protein NEDD5 99.4 5.2E-12 1.8E-16 100.8 15.6 173 18-210 17-214 (301)
180 1oxx_K GLCV, glucose, ABC tran 99.4 4E-14 1.4E-18 115.1 3.0 161 16-189 28-221 (353)
181 3tif_A Uncharacterized ABC tra 99.4 2.4E-14 8.1E-19 110.4 1.1 161 16-189 28-225 (235)
182 2pcj_A ABC transporter, lipopr 99.4 1.8E-14 6.2E-19 110.3 0.4 157 17-187 28-217 (224)
183 2qag_B Septin-6, protein NEDD5 99.4 2.3E-12 8E-17 106.6 12.7 139 17-163 38-200 (427)
184 3c5h_A Glucocorticoid receptor 99.4 7.3E-13 2.5E-17 103.4 9.1 90 103-209 162-254 (255)
185 4g1u_C Hemin import ATP-bindin 99.4 9.3E-15 3.2E-19 114.6 -1.7 159 16-189 34-228 (266)
186 1vpl_A ABC transporter, ATP-bi 99.4 6.3E-15 2.2E-19 114.9 -2.8 160 16-188 38-225 (256)
187 3izq_1 HBS1P, elongation facto 99.4 2.8E-12 9.6E-17 111.5 12.9 120 16-151 164-319 (611)
188 1g29_1 MALK, maltose transport 99.4 7.7E-14 2.6E-18 114.1 2.8 160 17-189 27-220 (372)
189 2it1_A 362AA long hypothetical 99.4 7.2E-14 2.5E-18 113.8 2.6 161 16-189 26-214 (362)
190 1z47_A CYSA, putative ABC-tran 99.4 5.8E-14 2E-18 113.9 2.0 161 16-189 38-226 (355)
191 1zo1_I IF2, translation initia 99.4 8.2E-15 2.8E-19 123.9 -3.4 160 19-206 4-163 (501)
192 2dy1_A Elongation factor G; tr 99.4 8E-12 2.7E-16 109.8 15.2 117 17-150 7-139 (665)
193 1ji0_A ABC transporter; ATP bi 99.4 1.7E-14 5.8E-19 111.6 -1.7 157 17-188 30-218 (240)
194 1wxq_A GTP-binding protein; st 99.4 1.2E-12 4.3E-17 108.1 9.4 88 21-115 2-113 (397)
195 2nq2_C Hypothetical ABC transp 99.4 1.1E-13 3.8E-18 107.8 2.8 147 17-186 29-206 (253)
196 2onk_A Molybdate/tungstate ABC 99.4 3.6E-14 1.2E-18 109.6 -0.2 156 20-188 25-206 (240)
197 2xex_A Elongation factor G; GT 99.4 1E-11 3.6E-16 109.5 15.4 120 16-152 7-142 (693)
198 2yyz_A Sugar ABC transporter, 99.4 6.5E-14 2.2E-18 113.9 1.2 161 16-189 26-214 (359)
199 1jny_A EF-1-alpha, elongation 99.4 1.7E-12 5.8E-17 108.8 9.8 119 17-151 4-158 (435)
200 1mv5_A LMRA, multidrug resista 99.4 3.9E-12 1.3E-16 98.5 10.7 162 15-188 24-216 (243)
201 3d31_A Sulfate/molybdate ABC t 99.4 2.3E-14 7.8E-19 116.2 -2.0 164 16-189 23-208 (348)
202 1v43_A Sugar-binding transport 99.4 6.2E-14 2.1E-18 114.5 0.2 161 16-189 34-222 (372)
203 3r7w_B Gtpase2, GTP-binding pr 99.4 4.3E-12 1.5E-16 101.5 10.7 120 21-152 1-121 (331)
204 2h5e_A Peptide chain release f 99.4 1.1E-11 3.6E-16 106.1 13.8 118 18-152 12-149 (529)
205 1dar_A EF-G, elongation factor 99.4 1.6E-11 5.6E-16 108.2 15.0 121 15-152 8-144 (691)
206 3p32_A Probable GTPase RV1496/ 99.3 1.4E-12 4.8E-17 106.5 7.4 123 67-219 170-293 (355)
207 1f60_A Elongation factor EEF1A 99.3 3.1E-12 1.1E-16 107.8 9.6 118 18-151 6-159 (458)
208 2www_A Methylmalonic aciduria 99.3 3.1E-12 1.1E-16 104.2 9.0 114 67-210 165-279 (349)
209 3vqt_A RF-3, peptide chain rel 99.3 1.9E-11 6.4E-16 105.0 14.0 118 18-152 30-167 (548)
210 2qi9_C Vitamin B12 import ATP- 99.3 1.9E-13 6.6E-18 106.1 1.0 155 17-188 24-212 (249)
211 3gfo_A Cobalt import ATP-bindi 99.3 2.1E-14 7.3E-19 112.9 -4.8 160 16-189 31-224 (275)
212 3nh6_A ATP-binding cassette SU 99.3 2.1E-13 7.3E-18 108.7 0.6 162 16-190 77-269 (306)
213 2p67_A LAO/AO transport system 99.3 8.9E-12 3.1E-16 101.2 9.9 111 67-209 147-260 (341)
214 2ixe_A Antigen peptide transpo 99.3 4.7E-13 1.6E-17 105.2 1.8 161 15-188 41-235 (271)
215 2rdo_7 EF-G, elongation factor 99.3 6.5E-11 2.2E-15 104.5 15.5 120 16-152 7-149 (704)
216 1g6h_A High-affinity branched- 99.3 2E-14 7E-19 112.3 -6.4 69 115-188 152-232 (257)
217 3mca_A HBS1, elongation factor 99.3 7.3E-14 2.5E-18 121.0 -3.8 169 16-209 174-396 (592)
218 2yz2_A Putative ABC transporte 99.3 9.4E-14 3.2E-18 109.0 -2.9 160 16-188 30-217 (266)
219 1tq4_A IIGP1, interferon-induc 99.3 3.9E-11 1.3E-15 99.3 12.3 167 20-211 70-254 (413)
220 2qm8_A GTPase/ATPase; G protei 99.3 2.4E-11 8E-16 98.5 10.6 163 16-209 52-260 (337)
221 2pze_A Cystic fibrosis transme 99.3 4.8E-12 1.7E-16 97.1 6.1 151 17-188 32-208 (229)
222 2pjz_A Hypothetical protein ST 99.3 2.1E-13 7.1E-18 106.7 -2.3 154 19-188 30-205 (263)
223 2ff7_A Alpha-hemolysin translo 99.2 5.9E-13 2E-17 103.3 -0.3 160 16-188 32-222 (247)
224 1r5b_A Eukaryotic peptide chai 99.2 3E-11 1E-15 102.0 9.8 119 17-151 41-195 (467)
225 1sgw_A Putative ABC transporte 99.2 3.5E-12 1.2E-16 96.7 3.4 131 17-163 33-178 (214)
226 2ghi_A Transport protein; mult 99.2 3E-12 1E-16 100.1 3.0 159 16-188 43-232 (260)
227 2d2e_A SUFC protein; ABC-ATPas 99.2 2.2E-13 7.6E-18 105.9 -3.7 69 115-188 141-223 (250)
228 3b5x_A Lipid A export ATP-bind 99.2 5.6E-11 1.9E-15 103.1 10.9 161 16-189 366-558 (582)
229 2zu0_C Probable ATP-dependent 99.2 6E-13 2.1E-17 104.4 -1.4 68 116-188 164-244 (267)
230 2bbs_A Cystic fibrosis transme 99.2 2.3E-11 7.7E-16 96.4 6.7 152 16-188 61-237 (290)
231 2cbz_A Multidrug resistance-as 99.2 4.3E-12 1.5E-16 97.9 2.1 150 16-188 28-207 (237)
232 1n0u_A EF-2, elongation factor 99.2 1.1E-10 3.7E-15 105.0 11.2 117 18-150 18-163 (842)
233 3qf4_A ABC transporter, ATP-bi 99.2 6E-12 2.1E-16 109.2 1.8 159 16-190 366-558 (587)
234 2ihy_A ABC transporter, ATP-bi 99.1 4.5E-13 1.5E-17 105.7 -5.2 69 115-188 160-242 (279)
235 3j25_A Tetracycline resistance 99.1 9.7E-11 3.3E-15 102.5 8.6 117 19-152 2-134 (638)
236 1yrb_A ATP(GTP)binding protein 99.1 2.2E-10 7.6E-15 89.4 9.5 130 69-212 109-259 (262)
237 3h2y_A GTPase family protein; 99.1 2.8E-12 9.7E-17 105.1 -1.4 134 19-163 160-297 (368)
238 1yqt_A RNAse L inhibitor; ATP- 99.1 1E-10 3.5E-15 100.4 7.9 148 17-184 310-477 (538)
239 3gd7_A Fusion complex of cysti 99.1 1.2E-11 4.2E-16 101.6 1.9 161 16-189 44-233 (390)
240 3bk7_A ABC transporter ATP-bin 99.1 3.7E-11 1.3E-15 104.3 4.7 148 17-184 380-547 (607)
241 4fn5_A EF-G 1, elongation fact 99.1 7.9E-10 2.7E-14 97.9 12.7 120 17-152 11-152 (709)
242 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.1E-10 7.1E-15 94.3 8.4 92 16-114 17-126 (392)
243 3ozx_A RNAse L inhibitor; ATP 99.1 5E-11 1.7E-15 102.1 4.8 66 115-185 384-462 (538)
244 4a82_A Cystic fibrosis transme 99.1 3.4E-12 1.2E-16 110.6 -2.6 162 16-190 364-556 (578)
245 3ec1_A YQEH GTPase; atnos1, at 99.1 2.6E-12 9.1E-17 105.3 -3.3 127 19-159 162-294 (369)
246 2yl4_A ATP-binding cassette SU 99.1 3.1E-11 1.1E-15 105.0 3.2 159 17-188 368-560 (595)
247 3qf4_B Uncharacterized ABC tra 99.1 5.7E-12 1.9E-16 109.6 -2.2 162 16-190 378-570 (598)
248 3b60_A Lipid A export ATP-bind 99.1 1.5E-11 5.2E-16 106.7 -0.3 160 17-189 367-558 (582)
249 4f4c_A Multidrug resistance pr 99.0 4.4E-11 1.5E-15 112.2 2.3 170 17-202 1103-1304(1321)
250 1jal_A YCHF protein; nucleotid 99.0 1.9E-10 6.4E-15 93.5 5.6 88 20-115 3-108 (363)
251 3ozx_A RNAse L inhibitor; ATP 99.0 2.4E-11 8.3E-16 104.0 0.2 66 115-185 137-213 (538)
252 1yqt_A RNAse L inhibitor; ATP- 99.0 2.6E-11 8.9E-16 104.0 0.1 66 115-185 157-234 (538)
253 2ohf_A Protein OLA1, GTP-bindi 99.0 3E-10 1E-14 93.2 6.4 91 17-114 20-127 (396)
254 3j16_B RLI1P; ribosome recycli 99.0 7.9E-11 2.7E-15 102.1 2.6 140 19-184 378-543 (608)
255 3j16_B RLI1P; ribosome recycli 99.0 3.9E-10 1.3E-14 97.8 6.8 67 115-186 220-298 (608)
256 3bk7_A ABC transporter ATP-bin 99.0 4.4E-11 1.5E-15 103.8 0.2 66 115-185 227-304 (607)
257 3szr_A Interferon-induced GTP- 99.0 1.9E-09 6.3E-14 93.9 10.1 128 21-152 47-229 (608)
258 1f5n_A Interferon-induced guan 98.9 2.5E-09 8.4E-14 92.1 8.9 108 17-131 36-148 (592)
259 2dby_A GTP-binding protein; GD 98.9 2.1E-09 7.2E-14 87.8 7.4 89 20-115 2-111 (368)
260 3g5u_A MCG1178, multidrug resi 98.9 1.3E-10 4.3E-15 108.9 -0.3 161 17-190 414-605 (1284)
261 1puj_A YLQF, conserved hypothe 98.9 4.2E-09 1.4E-13 83.1 8.1 67 17-88 118-184 (282)
262 2j37_W Signal recognition part 98.9 2.7E-08 9.4E-13 84.3 13.3 123 17-152 99-255 (504)
263 3g5u_A MCG1178, multidrug resi 98.9 1.4E-10 4.9E-15 108.5 -1.2 162 16-190 1056-1250(1284)
264 2iw3_A Elongation factor 3A; a 98.9 4.3E-10 1.5E-14 101.6 1.7 68 115-187 547-623 (986)
265 4f4c_A Multidrug resistance pr 98.9 1.4E-09 4.7E-14 102.3 4.8 157 17-189 442-632 (1321)
266 2iw3_A Elongation factor 3A; a 98.8 1.5E-09 5.2E-14 98.0 3.4 69 115-188 900-977 (986)
267 2wsm_A Hydrogenase expression/ 98.7 3E-08 1E-12 75.1 7.8 24 19-42 30-53 (221)
268 3e70_C DPA, signal recognition 98.6 8E-08 2.7E-12 77.3 7.9 120 17-152 127-283 (328)
269 3dm5_A SRP54, signal recogniti 98.6 1.2E-07 4.2E-12 78.9 9.1 123 18-152 99-254 (443)
270 4aby_A DNA repair protein RECN 98.6 1.1E-07 3.9E-12 78.9 8.8 67 117-187 296-377 (415)
271 3cnl_A YLQF, putative uncharac 98.6 3.3E-08 1.1E-12 77.2 5.1 60 20-84 100-159 (262)
272 1rj9_A FTSY, signal recognitio 98.6 1.2E-07 4E-12 75.6 8.1 28 17-44 100-127 (304)
273 4fid_A G protein alpha subunit 98.6 6.1E-07 2.1E-11 72.3 11.8 72 67-151 159-242 (340)
274 2yhs_A FTSY, cell division pro 98.6 2.1E-07 7.1E-12 78.3 9.2 128 15-152 289-453 (503)
275 3ohm_A Guanine nucleotide-bind 98.6 3.8E-06 1.3E-10 67.3 15.7 131 67-212 165-320 (327)
276 1t9h_A YLOQ, probable GTPase E 98.5 2.2E-08 7.4E-13 79.8 2.3 60 18-82 172-237 (307)
277 3kl4_A SRP54, signal recogniti 98.5 1.9E-07 6.5E-12 77.6 7.3 125 18-152 96-253 (433)
278 3ux8_A Excinuclease ABC, A sub 98.5 7.8E-08 2.7E-12 84.8 5.1 63 115-182 201-276 (670)
279 2hf9_A Probable hydrogenase ni 98.5 2.6E-07 8.8E-12 70.2 7.1 25 18-42 37-61 (226)
280 2v3c_C SRP54, signal recogniti 98.5 3.5E-07 1.2E-11 76.3 8.0 122 19-152 99-253 (432)
281 2og2_A Putative signal recogni 98.4 3.9E-06 1.3E-10 68.2 12.8 29 16-44 154-182 (359)
282 2yv5_A YJEQ protein; hydrolase 98.4 3.5E-07 1.2E-11 72.9 6.5 58 19-81 165-228 (302)
283 1u0l_A Probable GTPase ENGC; p 98.4 2.4E-07 8.1E-12 73.8 5.5 61 19-83 169-235 (301)
284 2npi_A Protein CLP1; CLP1-PCF1 98.4 5.1E-08 1.8E-12 81.9 1.7 158 17-188 136-329 (460)
285 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 5.4E-06 1.9E-10 67.7 13.5 67 115-187 278-362 (365)
286 3ux8_A Excinuclease ABC, A sub 98.4 1.1E-07 3.9E-12 83.7 2.9 71 115-188 542-630 (670)
287 1vma_A Cell division protein F 98.4 1.5E-06 5E-11 69.3 9.0 127 16-152 101-264 (306)
288 3q5d_A Atlastin-1; G protein, 98.4 1.4E-06 4.8E-11 72.7 8.8 109 17-131 65-196 (447)
289 2rcn_A Probable GTPase ENGC; Y 98.3 3.3E-07 1.1E-11 74.3 4.6 31 18-48 214-245 (358)
290 1htw_A HI0065; nucleotide-bind 98.3 3.5E-07 1.2E-11 65.7 3.1 31 17-48 31-61 (158)
291 1j8m_F SRP54, signal recogniti 98.2 2.9E-06 1E-10 67.3 7.9 124 19-152 98-254 (297)
292 2px0_A Flagellar biosynthesis 98.2 1.2E-06 4.3E-11 69.4 5.7 27 17-43 103-129 (296)
293 1znw_A Guanylate kinase, GMP k 98.2 4.7E-07 1.6E-11 68.0 3.1 29 15-43 16-44 (207)
294 3pih_A Uvrabc system protein A 98.2 1.7E-06 5.9E-11 78.1 6.3 65 115-182 804-880 (916)
295 3b85_A Phosphate starvation-in 98.2 2.7E-07 9.1E-12 69.5 0.9 31 18-49 21-51 (208)
296 1lvg_A Guanylate kinase, GMP k 98.2 5.9E-07 2E-11 67.0 2.5 26 18-43 3-28 (198)
297 1s96_A Guanylate kinase, GMP k 98.1 1.1E-06 3.7E-11 66.7 3.1 29 16-44 13-41 (219)
298 1z6g_A Guanylate kinase; struc 98.1 9.6E-07 3.3E-11 66.9 2.7 29 15-43 19-47 (218)
299 1ye8_A Protein THEP1, hypothet 98.1 1.1E-06 3.7E-11 64.5 2.9 23 21-43 2-24 (178)
300 3tr0_A Guanylate kinase, GMP k 98.1 1.3E-06 4.4E-11 65.2 3.3 27 17-43 5-31 (205)
301 1kgd_A CASK, peripheral plasma 98.1 1.9E-06 6.6E-11 63.2 3.2 26 18-43 4-29 (180)
302 1zp6_A Hypothetical protein AT 98.1 2.8E-06 9.6E-11 62.7 3.9 26 17-42 7-32 (191)
303 3c8u_A Fructokinase; YP_612366 98.1 2.1E-06 7.2E-11 64.5 3.3 29 16-44 19-47 (208)
304 4gp7_A Metallophosphoesterase; 98.1 2.2E-06 7.5E-11 62.4 3.2 25 17-41 7-31 (171)
305 1zu4_A FTSY; GTPase, signal re 98.0 3.4E-05 1.2E-09 61.8 10.3 27 16-42 102-128 (320)
306 3a00_A Guanylate kinase, GMP k 98.0 1.7E-06 5.6E-11 63.9 2.5 25 20-44 2-26 (186)
307 3asz_A Uridine kinase; cytidin 98.0 2.5E-06 8.7E-11 64.0 3.0 28 16-43 3-30 (211)
308 2v9p_A Replication protein E1; 98.0 2.6E-06 9E-11 67.6 3.1 135 16-189 123-257 (305)
309 2xxa_A Signal recognition part 98.0 5.6E-05 1.9E-09 63.0 11.1 124 17-152 98-255 (433)
310 2eyu_A Twitching motility prot 98.0 3.3E-06 1.1E-10 65.7 3.3 30 16-45 22-51 (261)
311 2ffh_A Protein (FFH); SRP54, s 98.0 2.9E-05 9.8E-10 64.5 8.7 123 18-152 97-252 (425)
312 4ido_A Atlastin-1; GTPase, GTP 98.0 0.00012 3.9E-09 61.0 12.2 109 16-131 64-196 (457)
313 2i3b_A HCR-ntpase, human cance 97.9 3.9E-06 1.3E-10 62.1 2.6 25 20-44 2-26 (189)
314 3ney_A 55 kDa erythrocyte memb 97.9 6E-06 2E-10 61.4 3.4 28 16-43 16-43 (197)
315 3aez_A Pantothenate kinase; tr 97.9 5.9E-06 2E-10 66.0 3.4 29 16-44 87-115 (312)
316 3lnc_A Guanylate kinase, GMP k 97.9 3.6E-06 1.2E-10 64.2 1.9 28 16-43 24-52 (231)
317 2bbw_A Adenylate kinase 4, AK4 97.9 7.3E-06 2.5E-10 63.1 3.6 29 18-46 26-57 (246)
318 3tau_A Guanylate kinase, GMP k 97.9 6.9E-06 2.4E-10 61.6 3.4 27 17-43 6-32 (208)
319 2gza_A Type IV secretion syste 97.9 7.2E-06 2.5E-10 66.9 3.6 28 18-45 174-201 (361)
320 4eun_A Thermoresistant glucoki 97.9 7.5E-06 2.6E-10 61.0 3.1 27 16-42 26-52 (200)
321 2jeo_A Uridine-cytidine kinase 97.9 8.1E-06 2.8E-10 62.9 3.4 29 14-42 20-48 (245)
322 2pt7_A CAG-ALFA; ATPase, prote 97.9 6.8E-06 2.3E-10 66.2 3.0 28 18-45 170-197 (330)
323 3b9q_A Chloroplast SRP recepto 97.8 5.1E-06 1.7E-10 66.1 2.2 29 16-44 97-125 (302)
324 1knq_A Gluconate kinase; ALFA/ 97.8 1.1E-05 3.8E-10 58.6 3.7 28 15-42 4-31 (175)
325 1zcb_A G alpha I/13; GTP-bindi 97.8 0.00015 5.2E-09 59.0 10.7 126 66-210 198-353 (362)
326 4a74_A DNA repair and recombin 97.8 7E-06 2.4E-10 62.2 2.6 28 16-43 22-49 (231)
327 2ehv_A Hypothetical protein PH 97.8 8.9E-06 3E-10 62.5 3.2 26 15-40 26-51 (251)
328 2j41_A Guanylate kinase; GMP, 97.8 1E-05 3.5E-10 60.3 3.4 26 18-43 5-30 (207)
329 2vp4_A Deoxynucleoside kinase; 97.8 1.3E-05 4.4E-10 61.1 3.7 29 14-42 15-43 (230)
330 2bdt_A BH3686; alpha-beta prot 97.8 1.1E-05 3.8E-10 59.4 2.8 22 20-41 3-24 (189)
331 4e22_A Cytidylate kinase; P-lo 97.8 1.5E-05 5.2E-10 61.6 3.6 31 17-47 25-58 (252)
332 2vf7_A UVRA2, excinuclease ABC 97.8 2.1E-05 7.2E-10 70.5 4.9 65 115-182 729-805 (842)
333 1sq5_A Pantothenate kinase; P- 97.7 1.5E-05 5.3E-10 63.5 3.5 28 16-43 77-104 (308)
334 3jvv_A Twitching mobility prot 97.7 1.5E-05 5.2E-10 64.7 3.3 27 18-44 122-148 (356)
335 3euj_A Chromosome partition pr 97.7 1.2E-05 4E-10 67.8 2.5 29 20-48 30-58 (483)
336 2obl_A ESCN; ATPase, hydrolase 97.7 1.2E-05 4.2E-10 65.0 2.6 32 15-46 67-98 (347)
337 1cip_A Protein (guanine nucleo 97.7 0.00031 1.1E-08 56.9 10.7 129 66-211 190-345 (353)
338 1p9r_A General secretion pathw 97.7 1.4E-05 4.7E-10 66.3 2.7 28 17-44 165-192 (418)
339 2ewv_A Twitching motility prot 97.7 1.8E-05 6.2E-10 64.7 3.2 29 16-44 133-161 (372)
340 2oap_1 GSPE-2, type II secreti 97.7 1.8E-05 6E-10 67.4 3.2 28 18-45 259-286 (511)
341 3uie_A Adenylyl-sulfate kinase 97.7 2.2E-05 7.4E-10 58.5 3.3 27 17-43 23-49 (200)
342 1lw7_A Transcriptional regulat 97.7 1.4E-05 4.8E-10 65.2 2.4 33 14-46 163-197 (365)
343 3thx_A DNA mismatch repair pro 97.7 1.5E-05 5.2E-10 72.3 2.7 23 17-39 660-682 (934)
344 1kag_A SKI, shikimate kinase I 97.6 2.3E-05 8E-10 56.7 2.5 24 19-42 4-27 (173)
345 3ec2_A DNA replication protein 97.6 2.1E-05 7.2E-10 57.4 2.1 27 18-44 37-63 (180)
346 2dpy_A FLII, flagellum-specifi 97.6 2.5E-05 8.7E-10 65.2 2.8 32 14-45 152-183 (438)
347 3kta_A Chromosome segregation 97.5 4.1E-05 1.4E-09 55.9 3.1 22 21-42 28-49 (182)
348 2kjq_A DNAA-related protein; s 97.5 3E-05 1E-09 55.0 2.2 27 18-44 35-61 (149)
349 2f1r_A Molybdopterin-guanine d 97.5 1.6E-05 5.5E-10 57.8 0.8 25 20-44 3-27 (171)
350 3tqc_A Pantothenate kinase; bi 97.5 5.8E-05 2E-09 60.4 3.7 27 17-43 90-116 (321)
351 1rz3_A Hypothetical protein rb 97.5 5.7E-05 1.9E-09 56.2 3.4 27 16-42 19-45 (201)
352 2qor_A Guanylate kinase; phosp 97.5 5.5E-05 1.9E-09 56.4 3.2 25 18-42 11-35 (204)
353 1nij_A Hypothetical protein YJ 97.5 9.6E-05 3.3E-09 59.1 4.7 25 19-43 4-28 (318)
354 2qt1_A Nicotinamide riboside k 97.5 9E-05 3.1E-09 55.3 4.3 29 14-42 16-44 (207)
355 1cke_A CK, MSSA, protein (cyti 97.4 7.6E-05 2.6E-09 56.4 3.3 23 20-42 6-28 (227)
356 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.6E-09 52.2 3.7 21 20-40 24-44 (149)
357 2w0m_A SSO2452; RECA, SSPF, un 97.4 6.3E-05 2.2E-09 56.9 2.7 27 17-43 21-47 (235)
358 1cr0_A DNA primase/helicase; R 97.4 7.5E-05 2.6E-09 59.0 3.0 30 15-44 31-60 (296)
359 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.5E-09 54.7 3.6 27 16-42 22-48 (199)
360 1jjv_A Dephospho-COA kinase; P 97.4 9.8E-05 3.3E-09 55.0 3.5 22 20-41 3-24 (206)
361 2if2_A Dephospho-COA kinase; a 97.4 8.3E-05 2.8E-09 55.3 2.7 22 20-41 2-23 (204)
362 1qhl_A Protein (cell division 97.3 9.4E-06 3.2E-10 61.7 -2.9 29 20-48 28-56 (227)
363 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.4E-09 54.2 3.4 24 19-42 18-41 (202)
364 1odf_A YGR205W, hypothetical 3 97.3 0.00015 5.1E-09 57.2 3.9 28 16-43 28-55 (290)
365 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.4E-09 53.7 3.1 22 21-42 3-24 (186)
366 1np6_A Molybdopterin-guanine d 97.3 0.00012 4.1E-09 53.3 2.9 23 20-42 7-29 (174)
367 4dzz_A Plasmid partitioning pr 97.3 0.0014 4.9E-08 48.4 8.9 70 68-151 75-144 (206)
368 2x8a_A Nuclear valosin-contain 97.3 0.00011 3.8E-09 57.5 2.6 22 22-43 47-68 (274)
369 2xtz_A Guanine nucleotide-bind 97.3 0.00082 2.8E-08 54.5 7.6 71 68-151 182-264 (354)
370 1y63_A LMAJ004144AAA protein; 97.3 0.00022 7.7E-09 52.1 4.0 28 15-42 6-33 (184)
371 2wwf_A Thymidilate kinase, put 97.3 0.00022 7.4E-09 53.2 4.0 29 13-41 4-32 (212)
372 2cvh_A DNA repair and recombin 97.2 0.00017 5.7E-09 54.1 3.2 26 16-41 17-42 (220)
373 2pez_A Bifunctional 3'-phospho 97.2 0.00018 6.2E-09 52.3 3.2 25 18-42 4-28 (179)
374 1svm_A Large T antigen; AAA+ f 97.2 0.00017 5.7E-09 59.0 3.2 27 16-42 166-192 (377)
375 1n0w_A DNA repair protein RAD5 97.2 0.00015 5E-09 55.3 2.7 27 16-42 21-47 (243)
376 1ukz_A Uridylate kinase; trans 97.2 0.00031 1.1E-08 52.1 4.4 30 12-41 8-37 (203)
377 2yvu_A Probable adenylyl-sulfa 97.2 0.00033 1.1E-08 51.2 4.3 27 16-42 10-36 (186)
378 2cdn_A Adenylate kinase; phosp 97.2 0.0003 1E-08 52.1 4.0 31 11-41 12-42 (201)
379 3cm0_A Adenylate kinase; ATP-b 97.2 0.00025 8.5E-09 51.8 3.4 23 18-40 3-25 (186)
380 1ixz_A ATP-dependent metallopr 97.1 0.00019 6.5E-09 55.3 2.6 21 22-42 52-72 (254)
381 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.1E-09 50.8 3.3 22 20-41 2-23 (173)
382 1wb9_A DNA mismatch repair pro 97.1 0.00022 7.5E-09 63.9 3.2 27 17-43 605-631 (800)
383 3qks_A DNA double-strand break 97.1 0.00034 1.2E-08 52.2 3.7 21 20-40 24-44 (203)
384 1kht_A Adenylate kinase; phosp 97.1 0.0003 1E-08 51.4 3.4 23 19-41 3-25 (192)
385 1in4_A RUVB, holliday junction 97.1 0.00022 7.5E-09 57.4 2.8 24 20-43 52-75 (334)
386 1nlf_A Regulatory protein REPA 97.1 0.00021 7.1E-09 56.0 2.5 27 16-42 27-53 (279)
387 1ly1_A Polynucleotide kinase; 97.1 0.00035 1.2E-08 50.5 3.6 22 20-41 3-24 (181)
388 3lw7_A Adenylate kinase relate 97.1 0.00032 1.1E-08 50.3 3.2 20 20-39 2-21 (179)
389 1azs_C GS-alpha; complex (lyas 97.1 0.0049 1.7E-07 50.7 10.5 73 66-151 214-298 (402)
390 2rhm_A Putative kinase; P-loop 97.1 0.00037 1.3E-08 51.1 3.6 24 18-41 4-27 (193)
391 1tf7_A KAIC; homohexamer, hexa 97.1 0.00021 7.1E-09 61.2 2.5 29 16-44 36-66 (525)
392 1gvn_B Zeta; postsegregational 97.1 0.00041 1.4E-08 54.6 4.0 27 15-41 29-55 (287)
393 2o5v_A DNA replication and rep 97.1 0.00027 9.1E-09 57.5 2.9 44 116-164 265-320 (359)
394 3nwj_A ATSK2; P loop, shikimat 97.0 0.00026 9E-09 54.6 2.6 23 19-41 48-70 (250)
395 1w1w_A Structural maintenance 97.0 0.0003 1E-08 58.6 3.2 25 19-43 26-50 (430)
396 1iy2_A ATP-dependent metallopr 97.0 0.00027 9.1E-09 55.3 2.6 22 22-43 76-97 (278)
397 1qhx_A CPT, protein (chloramph 97.0 0.00042 1.4E-08 50.1 3.5 23 20-42 4-26 (178)
398 3qkt_A DNA double-strand break 97.0 0.00042 1.5E-08 55.9 3.7 62 115-182 247-326 (339)
399 1xjc_A MOBB protein homolog; s 97.0 0.00045 1.5E-08 49.9 3.5 24 19-42 4-27 (169)
400 1e69_A Chromosome segregation 97.0 0.00032 1.1E-08 56.1 3.0 66 115-186 218-300 (322)
401 1ewq_A DNA mismatch repair pro 97.0 0.00031 1.1E-08 62.6 3.0 25 19-43 576-600 (765)
402 1uf9_A TT1252 protein; P-loop, 97.0 0.00049 1.7E-08 50.8 3.7 26 17-42 6-31 (203)
403 2v54_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 50.8 3.8 25 18-42 3-27 (204)
404 1pzn_A RAD51, DNA repair and r 97.0 0.00031 1.1E-08 56.9 2.6 28 16-43 128-155 (349)
405 3trf_A Shikimate kinase, SK; a 97.0 0.00048 1.6E-08 50.2 3.4 23 19-41 5-27 (185)
406 1aky_A Adenylate kinase; ATP:A 97.0 0.00051 1.7E-08 51.7 3.6 24 18-41 3-26 (220)
407 3iij_A Coilin-interacting nucl 97.0 0.00056 1.9E-08 49.7 3.7 23 18-40 10-32 (180)
408 1ak2_A Adenylate kinase isoenz 97.0 0.00055 1.9E-08 52.0 3.8 31 11-41 8-38 (233)
409 3cr8_A Sulfate adenylyltranfer 97.0 0.00021 7.3E-09 61.3 1.6 28 17-44 367-394 (552)
410 2jaq_A Deoxyguanosine kinase; 97.0 0.00048 1.6E-08 50.9 3.3 21 21-41 2-22 (205)
411 2plr_A DTMP kinase, probable t 97.0 0.00058 2E-08 50.8 3.7 23 19-41 4-26 (213)
412 4eaq_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 51.4 4.1 27 16-42 23-49 (229)
413 2c95_A Adenylate kinase 1; tra 96.9 0.00058 2E-08 50.1 3.6 24 18-41 8-31 (196)
414 1u0l_A Probable GTPase ENGC; p 96.9 0.0012 4.2E-08 52.2 5.6 86 99-204 80-167 (301)
415 1nn5_A Similar to deoxythymidy 96.9 0.00058 2E-08 50.9 3.5 25 17-41 7-31 (215)
416 4b4t_L 26S protease subunit RP 96.9 0.01 3.5E-07 49.4 11.2 25 18-42 214-238 (437)
417 1vht_A Dephospho-COA kinase; s 96.9 0.00064 2.2E-08 51.0 3.8 23 19-41 4-26 (218)
418 1nks_A Adenylate kinase; therm 96.9 0.00055 1.9E-08 50.0 3.3 22 20-41 2-23 (194)
419 1m7g_A Adenylylsulfate kinase; 96.9 0.00066 2.3E-08 50.7 3.7 26 17-42 23-48 (211)
420 1tev_A UMP-CMP kinase; ploop, 96.9 0.00066 2.3E-08 49.7 3.6 23 19-41 3-25 (196)
421 2p5t_B PEZT; postsegregational 96.9 0.00055 1.9E-08 52.8 3.0 28 15-42 28-55 (253)
422 2ze6_A Isopentenyl transferase 96.9 0.00067 2.3E-08 52.3 3.5 23 20-42 2-24 (253)
423 3a8t_A Adenylate isopentenyltr 96.8 0.0017 5.9E-08 52.0 5.7 26 18-43 39-64 (339)
424 1zd8_A GTP:AMP phosphotransfer 96.8 0.00071 2.4E-08 51.2 3.3 22 19-40 7-28 (227)
425 1gtv_A TMK, thymidylate kinase 96.8 0.00027 9.2E-09 52.8 0.9 22 21-42 2-23 (214)
426 1zak_A Adenylate kinase; ATP:A 96.8 0.00074 2.5E-08 50.8 3.1 23 19-41 5-27 (222)
427 1via_A Shikimate kinase; struc 96.8 0.00073 2.5E-08 48.8 2.9 22 20-41 5-26 (175)
428 4b4t_K 26S protease regulatory 96.8 0.011 3.9E-07 49.0 10.4 24 19-42 206-229 (428)
429 3thx_B DNA mismatch repair pro 96.8 0.00044 1.5E-08 62.7 2.1 25 17-41 671-695 (918)
430 3tlx_A Adenylate kinase 2; str 96.8 0.001 3.4E-08 51.0 3.8 24 18-41 28-51 (243)
431 1puj_A YLQF, conserved hypothe 96.8 0.0012 4E-08 51.9 4.2 90 97-210 17-106 (282)
432 3umf_A Adenylate kinase; rossm 96.8 0.0012 4.2E-08 49.7 4.2 27 15-41 25-51 (217)
433 1qf9_A UMP/CMP kinase, protein 96.8 0.0012 4.1E-08 48.2 4.1 23 19-41 6-28 (194)
434 3fb4_A Adenylate kinase; psych 96.8 0.00086 2.9E-08 50.1 3.3 20 21-40 2-21 (216)
435 4b4t_I 26S protease regulatory 96.8 0.017 5.8E-07 47.8 11.1 24 19-42 216-239 (437)
436 1q3t_A Cytidylate kinase; nucl 96.7 0.001 3.5E-08 50.6 3.7 25 17-41 14-38 (236)
437 3r20_A Cytidylate kinase; stru 96.7 0.00099 3.4E-08 50.7 3.5 22 19-40 9-30 (233)
438 1lv7_A FTSH; alpha/beta domain 96.7 0.00091 3.1E-08 51.5 3.3 23 20-42 46-68 (257)
439 4b4t_J 26S protease regulatory 96.7 0.0099 3.4E-07 48.8 9.5 24 19-42 182-205 (405)
440 3h2y_A GTPase family protein; 96.7 0.0044 1.5E-07 50.5 7.4 103 91-209 57-159 (368)
441 3dl0_A Adenylate kinase; phosp 96.7 0.00098 3.3E-08 49.9 3.3 21 21-41 2-22 (216)
442 2o8b_B DNA mismatch repair pro 96.7 0.0008 2.7E-08 61.9 3.2 25 19-44 789-813 (1022)
443 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.8E-08 48.7 3.3 23 19-41 12-34 (199)
444 4b4t_H 26S protease regulatory 96.7 0.011 3.7E-07 49.4 9.5 25 18-42 242-266 (467)
445 1ls1_A Signal recognition part 96.6 0.0011 3.7E-08 52.4 3.2 26 18-43 97-122 (295)
446 2z0h_A DTMP kinase, thymidylat 96.6 0.0013 4.3E-08 48.3 3.3 21 21-41 2-22 (197)
447 2vli_A Antibiotic resistance p 96.6 0.0009 3.1E-08 48.5 2.4 23 19-41 5-27 (183)
448 2dr3_A UPF0273 protein PH0284; 96.6 0.0012 4E-08 50.3 3.0 24 17-40 21-44 (247)
449 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0015 5.2E-08 50.5 3.7 23 19-41 4-26 (260)
450 1tf7_A KAIC; homohexamer, hexa 96.6 0.001 3.5E-08 56.8 2.9 29 16-44 278-306 (525)
451 1jbk_A CLPB protein; beta barr 96.6 0.0017 5.7E-08 47.0 3.7 24 19-42 43-66 (195)
452 2f6r_A COA synthase, bifunctio 96.6 0.0018 6.1E-08 50.8 4.0 24 17-40 73-96 (281)
453 2pbr_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 47.8 3.3 21 21-41 2-22 (195)
454 2pt5_A Shikimate kinase, SK; a 96.6 0.0015 5.2E-08 46.6 3.3 21 21-41 2-22 (168)
455 3be4_A Adenylate kinase; malar 96.5 0.0012 4E-08 49.6 2.7 23 19-41 5-27 (217)
456 1e6c_A Shikimate kinase; phosp 96.5 0.0014 4.7E-08 47.0 2.9 22 20-41 3-24 (173)
457 1e4v_A Adenylate kinase; trans 96.5 0.0015 5.1E-08 48.9 3.1 21 21-41 2-22 (214)
458 3auy_A DNA double-strand break 96.5 0.0016 5.6E-08 53.1 3.6 21 20-40 26-46 (371)
459 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.4E-08 49.7 3.7 26 16-41 19-44 (252)
460 2qmh_A HPR kinase/phosphorylas 96.5 0.0021 7.3E-08 47.5 3.7 25 18-42 33-57 (205)
461 2xb4_A Adenylate kinase; ATP-b 96.5 0.0017 5.9E-08 48.9 3.3 20 21-40 2-21 (223)
462 3bos_A Putative DNA replicatio 96.5 0.002 6.8E-08 48.6 3.6 25 18-42 51-75 (242)
463 3cf0_A Transitional endoplasmi 96.5 0.0016 5.5E-08 51.5 3.2 25 18-42 48-72 (301)
464 3v9p_A DTMP kinase, thymidylat 96.4 0.0017 5.8E-08 49.2 3.0 29 14-42 20-48 (227)
465 3exa_A TRNA delta(2)-isopenten 96.4 0.0022 7.5E-08 50.9 3.7 24 19-42 3-26 (322)
466 4fcw_A Chaperone protein CLPB; 96.4 0.0028 9.6E-08 50.0 4.4 28 16-43 44-71 (311)
467 2w58_A DNAI, primosome compone 96.4 0.0021 7.2E-08 47.4 3.4 24 20-43 55-78 (202)
468 3m6a_A ATP-dependent protease 96.4 0.0016 5.4E-08 55.9 3.1 26 18-43 107-132 (543)
469 3foz_A TRNA delta(2)-isopenten 96.4 0.0026 8.7E-08 50.4 4.0 24 19-42 10-33 (316)
470 1sxj_E Activator 1 40 kDa subu 96.4 0.0013 4.3E-08 53.1 2.3 22 21-42 38-59 (354)
471 3lda_A DNA repair protein RAD5 96.4 0.0016 5.6E-08 53.6 2.9 25 16-40 175-199 (400)
472 2iyv_A Shikimate kinase, SK; t 96.4 0.0018 6.1E-08 47.1 2.8 22 20-41 3-24 (184)
473 2ygr_A Uvrabc system protein A 96.4 0.0012 4E-08 60.1 2.1 65 115-182 862-938 (993)
474 3b9p_A CG5977-PA, isoform A; A 96.4 0.002 6.9E-08 50.6 3.1 24 19-42 54-77 (297)
475 2p65_A Hypothetical protein PF 96.3 0.0021 7E-08 46.4 2.8 24 19-42 43-66 (187)
476 1zuh_A Shikimate kinase; alpha 96.3 0.0026 9E-08 45.5 3.3 22 20-41 8-29 (168)
477 3sr0_A Adenylate kinase; phosp 96.3 0.0027 9.1E-08 47.4 3.3 21 21-41 2-22 (206)
478 3ec1_A YQEH GTPase; atnos1, at 96.3 0.0036 1.2E-07 51.1 4.3 101 93-209 61-161 (369)
479 1a7j_A Phosphoribulokinase; tr 96.3 0.0016 5.3E-08 51.4 2.1 24 18-41 4-27 (290)
480 1tue_A Replication protein E1; 96.3 0.0023 8E-08 47.5 2.8 24 19-42 58-81 (212)
481 2grj_A Dephospho-COA kinase; T 96.2 0.003 1E-07 46.6 3.3 23 19-41 12-34 (192)
482 1ltq_A Polynucleotide kinase; 96.2 0.0032 1.1E-07 49.6 3.6 22 20-41 3-24 (301)
483 3ake_A Cytidylate kinase; CMP 96.2 0.0031 1.1E-07 46.6 3.3 21 21-41 4-24 (208)
484 3zvl_A Bifunctional polynucleo 96.2 0.0042 1.5E-07 51.4 4.4 25 17-41 256-280 (416)
485 2r6f_A Excinuclease ABC subuni 96.2 0.0012 4.2E-08 59.8 1.1 65 115-182 844-920 (972)
486 3cwq_A Para family chromosome 96.2 0.031 1.1E-06 41.5 8.7 66 68-151 67-134 (209)
487 3h4m_A Proteasome-activating n 96.2 0.0036 1.2E-07 48.8 3.6 24 19-42 51-74 (285)
488 3syl_A Protein CBBX; photosynt 96.1 0.0041 1.4E-07 49.0 3.9 26 17-42 65-90 (309)
489 4ag6_A VIRB4 ATPase, type IV s 96.1 0.003 1E-07 51.9 3.2 26 18-43 34-59 (392)
490 3crm_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 49.9 3.5 23 20-42 6-28 (323)
491 3d3q_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 50.3 3.4 23 20-42 8-30 (340)
492 3t15_A Ribulose bisphosphate c 96.1 0.0057 1.9E-07 48.1 4.5 25 18-42 35-59 (293)
493 2ocp_A DGK, deoxyguanosine kin 96.1 0.004 1.4E-07 47.4 3.5 24 19-42 2-25 (241)
494 2qby_A CDC6 homolog 1, cell di 96.1 0.0028 9.4E-08 51.4 2.7 26 18-43 44-69 (386)
495 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0046 1.6E-07 47.4 3.8 24 19-42 39-62 (262)
496 1fnn_A CDC6P, cell division co 96.1 0.0035 1.2E-07 51.0 3.2 23 21-43 46-68 (389)
497 3n70_A Transport activator; si 96.1 0.004 1.4E-07 43.5 3.1 23 20-42 25-47 (145)
498 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0044 1.5E-07 50.4 3.7 23 17-39 31-53 (362)
499 1p5z_B DCK, deoxycytidine kina 96.0 0.003 1E-07 48.8 2.6 27 16-42 21-47 (263)
500 1ypw_A Transitional endoplasmi 96.0 0.0031 1.1E-07 56.7 3.0 27 17-43 236-262 (806)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.96 E-value=2.2e-27 Score=185.12 Aligned_cols=204 Identities=31% Similarity=0.540 Sum_probs=151.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc-HHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~~~~ 94 (228)
..+..+|+|+|.+|+|||||+|+|+|.............|....... ....+..+.++||||+.+..... +...+++.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~-~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS-RRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-EEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-EEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 34568999999999999999999999876544333223444333333 33567889999999998654332 22334555
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccc-cccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV-FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~-~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+++....+++|++++|++++ +++..+...++.+...++... ..|+++++||.|+.. ..+.+++.......++.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHH
Confidence 55555568999999999998 688888888999988876532 247888999999864 4677777664456789999
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSL 225 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (228)
+.|..+++.++.... ++..+.++.+|++.|.++++++++.+|.+++|+..+
T Consensus 173 ~~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 173 AECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp HHTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999998887653 445679999999999999999999999999998764
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=3e-27 Score=183.64 Aligned_cols=205 Identities=35% Similarity=0.641 Sum_probs=137.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+.....+|+|+|++|+|||||+|+|+|...+..+......|....... ....+..+.++||||+.+.........+++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS-SSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-EEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-EEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 344568999999999999999999999877544432223444433333 2356778999999999987766666667777
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
..+....+++|++++|++++ +++..+..++..+...++....+|+++|+||+|.... ..+.+++.. ....++++.+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence 87777778999999999997 7777888888888877765444589999999999876 777777764 2446888999
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSL 225 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (228)
.|...++.++.... ++....++.+|++.+.+++.++++.+|.+++|.+.+
T Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 180 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred HcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 99999888877643 345568999999999999999999999999987654
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.93 E-value=1.6e-23 Score=164.53 Aligned_cols=205 Identities=30% Similarity=0.547 Sum_probs=149.1
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.+..+..+|+|+|++|||||||+|.|++...+.........|....... ....+..+.++||||+.+.........+.+
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ-GSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-EEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-EEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 3455668999999999999999999999875433322222333333222 335677899999999987766555554566
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe-CCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
...+....+.+|++++|++++ +++..+...++.+...++....+|.++++| |+|... ..+..++.......++++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence 666666678899999999998 588887777788887776543346777777 999874 456666665455567778
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTS 224 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 224 (228)
.+.|...+..++. +..||.++.+++++++.|.+++..+.+..|.++++.+.
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~ 222 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI 222 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence 8888877655555 77889999999999999999999987777877776554
No 4
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=1.8e-20 Score=149.93 Aligned_cols=166 Identities=18% Similarity=0.173 Sum_probs=113.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|++|+|||||+|+|+|.... .....+.|+...........+..+.++||||+.+... .+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~--ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee--eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---HHHHHHHHHHH
Confidence 357999999999999999999998752 2223333444333333335667899999999886432 33333444455
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.....+|++++|+|++.+++..+...++.+..... . .|+++++||+|.... .. +...++. + +.
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 56678999999999987888887666555554321 2 389999999999765 44 4333332 1 11
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...++.||.++.++++|++.|.+.+++
T Consensus 146 -----~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 -----EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp -----TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred -----cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 1123456888899999999999887765
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=1.8e-20 Score=150.49 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=118.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
++.++...|+|+|.+|||||||+|+|+|... ........|+........... +..+.++||||+.+.... ....+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~-~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS-DVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT-CHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc-hhHHHH
Confidence 3444457999999999999999999999875 222333444444444444455 778999999999875521 223344
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCC-ccchhhHHHHhhccCCchHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~-~~~~~~~~~~~~~~~~~~~~ 170 (228)
+..........+|++++|+|++...+..+... ++.+.. .. .|+++|+||+|.. .. ..+...++.
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~--~pvilV~NK~Dl~~~~--~~~~~~~~~------- 147 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LN--KPVIVVINKIDKIGPA--KNVLPLIDE------- 147 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GC--CCEEEEEECGGGSSSG--GGGHHHHHH-------
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cC--CCEEEEEECccCCCCH--HHHHHHHHH-------
Confidence 44444455567899999999997888887765 555443 12 3899999999987 44 444444433
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.+.+.. +...++.||.++.++++|++.|.+.+++.
T Consensus 148 -l~~~~~~----~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 148 -IHKKHPE----LTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp -HHHHCTT----CCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred -HHHhccC----CCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 3333321 11234557888899999999999998764
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=6.3e-20 Score=140.50 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=113.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.....+|+|+|.+|+|||||+|+|++.............|............+..+.++||||+.+........ ..+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~ 104 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAK-AHWEQ 104 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHH-HHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhH-HHHHH
Confidence 34567999999999999999999999862111111122333333333332445679999999987654433221 22222
Q ss_pred HH---hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 96 ~~---~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.+ -.....+|++++++++..+++..+..+++.+.. .. .|+++|+||+|.... ..+...+.. +.+.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~---~~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 172 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP---TG--KPIHSLLTKCDKLTR--QESINALRA-----TQKS 172 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG---GC--CCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence 22 122456899999999988888877777766654 12 379999999999876 555544443 3333
Q ss_pred HHhc-----CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 173 LQLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 173 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.... ...+ ..+..||.++.++++|++.|.+.+++..
T Consensus 173 l~~~~~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 173 LDAYRDAGYAGKL----TVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHTCCSCE----EEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHhhhhcccCCCC----eEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3221 1111 1233467788999999999999887653
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=2.5e-18 Score=128.73 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=104.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.....+|+|+|++|+|||||+|.|++.............|....... . +..+.++||||+.+....... ...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~~ 94 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWGR 94 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHHH
Confidence 44568999999999999999999998763211111112232222221 1 336899999998776544322 122222
Q ss_pred HHh---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 96 CLG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 96 ~~~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.+. .....+|++++++|++.+.+..+...++++... . .|+++|+||+|.... +++...... +.+.
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 162 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK--GKWDKHAKV-----VRQT 162 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--HHHHHHHHH-----HHHH
Confidence 222 223466999999999988888887666665431 2 279999999999876 655543333 3322
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
....... ..+..|+.++.+++++++.|.+.++
T Consensus 163 ~~~~~~~-----~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 LNIDPED-----ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HTCCTTS-----EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcccCCC-----ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2111111 1223567778999999999887764
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=3.2e-18 Score=127.92 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=109.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+.....+|+|+|++|+|||||+|.|++........ ....|...... ..+..+.++||||+.......... ..+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~-~~~~ 92 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-TPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKER-MLWK 92 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-SCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHH-HHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-CCCCccCeEEE----EECCcEEEEECCCCccccCChhhH-HHHH
Confidence 34455799999999999999999999886321111 11222222211 124458899999977654332221 2222
Q ss_pred HH---HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 95 KC---LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 95 ~~---~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.. .......++++++++++....+......++.+... . .|+++|+||+|.... .......+. +.+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 160 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---N--IPFTIVLTKMDKVKM--SERAKKLEE-----HRK 160 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCh--HHHHHHHHH-----HHH
Confidence 22 22233567999999999877787777766666543 2 379999999999865 555554444 444
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
........ ..+..||.++.+++++++.|.+.+.+
T Consensus 161 ~~~~~~~~-----~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 161 VFSKYGEY-----TIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHSSCCS-----CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHhhcCCC-----ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 44332211 22345777889999999999888764
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=1.8e-18 Score=135.79 Aligned_cols=142 Identities=25% Similarity=0.317 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+|+|.+|+|||||+|+|++......... ...|....... ....+..+.++||||+.+.....+...+.+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~-~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVS-RTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEE-EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEE-EEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 458999999999999999999999864222211 12222222222 2356778999999999876654444434444443
Q ss_pred hhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
...++|++++|++++ .+++..+..+++.+...++....+|+++|+||+|........++++++.
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 234789999998886 3577777888898888877655568999999999853322555555553
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=9.7e-18 Score=132.25 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+++|.+|+|||||+|+|++......... ...|....... ....+..+.++||||+.+.........+.+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~-~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVS-RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEE-EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEE-EeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999998875222211 12222222222 2245678999999999776543333323333322
Q ss_pred hhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
...++|++++|++++. +++..+..+++.+...++....+|+++|+||+|.......+++++++. ....+.+.++..
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 2357899999988763 577777788888887776543458999999999875421256555543 111222222211
Q ss_pred C----------CeEEEeeCC--Cccc-------ccchHHHHHHHHHHHHHHHhcCCCCCChhhhh
Q 027090 177 D----------NRCVLFDNK--TKDE-------AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKV 222 (228)
Q Consensus 177 ~----------~~~~~~~~~--~~~~-------~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 222 (228)
. -.+.+..+. +... .....-..+|++.|.+.+..++.....+....
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~ 257 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLI 257 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHH
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHh
Confidence 0 122222221 1100 01112356999999999999888776654443
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=1.3e-17 Score=128.28 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=103.7
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+.......+|+|+|.+|+|||||+|.|++...... ....++..............+.++||||..+........ .
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~ 97 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ---SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT-I 97 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE---CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH-H
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC---CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhh-H
Confidence 344445678999999999999999999998865311 122222222222222356779999999986543211110 0
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
+. ..+.......|++++|+|+++..+.....++.++..+.......|+++|+||+|+... +.+...... ...+
T Consensus 98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~ 170 (228)
T 2qu8_A 98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQ 170 (228)
T ss_dssp HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHH----HHHH
T ss_pred HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHH----HHHH
Confidence 01 1111223566999999999866554333333334333222112389999999998754 333221111 1233
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.......+ ..+..||.++.+++++++.|.+.+.+
T Consensus 171 ~~~~~~~~~----~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 171 ILDNVKNPI----KFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHCCSCE----EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCc----eEEEEecccCCCHHHHHHHHHHHHHH
Confidence 333322111 12345777889999999998887765
No 12
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=2.6e-17 Score=123.45 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=104.3
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
++.+.....+|+|+|.+|||||||++.|++...... ....|........ ......+.++||||...
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~---------- 75 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETF-EKGRVAFTVFDMGGAKK---------- 75 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEE-EETTEEEEEEEECCSGG----------
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEE-EeCCEEEEEEECCCCHh----------
Confidence 345666678999999999999999999998875221 1223333333332 25677899999999532
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcc------ccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN------VFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~------~~~~~llv~~~~D~~~~~~~~~~~~~~~~ 164 (228)
+..........+|++++|+|+++..+.... .++..+....... ...|+++|+||+|+... .....+.+.
T Consensus 76 -~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~- 151 (199)
T 4bas_A 76 -FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI- 151 (199)
T ss_dssp -GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH-
T ss_pred -HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH-
Confidence 122233456788999999999866555544 3443333221100 12389999999999765 444433332
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+. +...+....+ ..+..||.++.+++++++.|.+.+.+..
T Consensus 152 ----~~-~~~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 152 ----LD-LTTLMGDHPF---VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp ----HT-HHHHHTTSCE---EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ----hc-chhhccCCee---EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 11 1111111111 1234577788999999999988887654
No 13
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=2.2e-18 Score=137.93 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=105.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~~~~~~~~~ 97 (228)
..+|+|+|++|+|||||+|+|+|..... ......|+..............+.++||||+. .. .....+.+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 4589999999999999999999987521 22223343333333333556779999999975 11 111111111122
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc-cchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++++++.. ++.++...++.+.. .. .|+++++||+|... . ..+...+.. +.+..
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~---~~--~P~ilvlNK~D~~~~~--~~~~~~l~~--------l~~~~ 146 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE---GK--APVILAVNKVDNVQEK--ADLLPHLQF--------LASQM 146 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS---SS--SCEEEEEESTTTCCCH--HHHHHHHHH--------HHTTS
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh---cC--CCEEEEEECcccCccH--HHHHHHHHH--------HHHhc
Confidence 344578999999999986 88888755444331 12 38999999999876 3 344343332 22222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+. ...++.|+.++.++++|++.+...+++
T Consensus 147 ~~-----~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NF-----LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CC-----SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred Cc-----CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 21 123445777789999999998887765
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=1.4e-18 Score=127.93 Aligned_cols=164 Identities=19% Similarity=0.147 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
++.+|+|+|++|+|||||+|+|++..... ......++..........++..+.++||||+.......+. ..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~- 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI--VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER--IGIERA- 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHH--HHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce--eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHH--HHHHHH-
Confidence 45799999999999999999999875321 1112222221111222245667899999998654321111 011111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++++|++.+.+.....++..+....... .|+++|+||+|+... .. .+ .. . .
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~-~~-----------~-~ 138 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GM-SE-----------V-N 138 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EE-EE-----------E-T
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hh-hh-----------c-c
Confidence 12345779999999998777766666666665543222 389999999997532 10 00 00 0 0
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. . ..+..||.++.+++++++.|.+.+..
T Consensus 139 ~-~----~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 139 G-H----ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp T-E----EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred C-C----ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 0 0 12346888899999999998876654
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=4e-17 Score=128.99 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCC----CCCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~~~~~ 89 (228)
....+|+|+|.+|+|||||+|+|++...+..... ....|+......... .++ ..+.++||||+.+.....+.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3457899999999999999999998876433210 002222222222111 222 378999999997664433222
Q ss_pred HHHH--------HHHHhh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 90 GKEI--------VKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 90 ~~~~--------~~~~~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
+.+ ..++.. ...++|+++++++.. ..+...+...++.+.. . .|+++|+||+|...
T Consensus 86 -~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 86 -QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT 158 (274)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSC
T ss_pred -HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCC
Confidence 111 222211 123578999998765 3677777776665543 2 38999999999987
Q ss_pred cchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. .++....+. +.+........ .+..++.++.++.++.+.|.+.++-
T Consensus 159 ~--~e~~~~~~~-----i~~~l~~~~i~------v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 159 P--EECQQFKKQ-----IMKEIQEHKIK------IYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTTCC------CCCC-----------CHHHHHTCSE
T ss_pred H--HHHHHHHHH-----HHHHHHHcCCe------EEcCCCCCChhHHHHHHHHhcCCCc
Confidence 6 666665554 44444433322 2234566778888998888776553
No 16
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.75 E-value=3.2e-17 Score=118.75 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+++|++|+|||||+|.|++........ ....+....... ....+..+.++||||........ ..+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGV-VETDRGRFLLVDTGGLWSGDKWE----KKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEE-EEETTEEEEEEECGGGCSSSSCC----HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEE-EEeCCceEEEEECCCCCCccchH----HHHHHHHHH
Confidence 589999999999999999999876321111 112222222222 22456689999999987643211 223333334
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|++++++++..+++..+....+++... . .|+++|+||+|.... .+ .+.+ +.+ ..
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~--~~---~~~~--------~~~-~~-- 134 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKH--EL---YLGP--------LYG-LG-- 134 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGG--GG---GCGG--------GGG-GS--
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccc--hH---hHHH--------HHh-CC--
Confidence 45678999999999977888776666655541 2 379999999998754 21 1111 111 11
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
....+..|+.++.+++++++.+.+.+
T Consensus 135 ---~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 135 ---FGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---CCCeEEEecccCCChHHHHHHHHHhC
Confidence 01345567888899999999887654
No 17
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=1.8e-16 Score=116.70 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.++..+|+|+|++|+|||||+|.|++....... ....+........ ..++..+.++||||.......
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 71 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQV-TVNDKKITFLDTPGHEAFTTM---------- 71 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEE-EETTEEEEESCCCSSSSSSCS----------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEE-EeCCceEEEEECCCCHHHHHH----------
Confidence 345679999999999999999999987653221 1122222222222 245667899999996543321
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+++++.........+..+. ... .|+++|+||+|+.....+++...+.. ...+...
T Consensus 72 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 140 (178)
T 2lkc_A 72 -RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEE 140 (178)
T ss_dssp -CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTT
T ss_pred -HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhH
Confidence 123456789999999998666665555444332 222 38999999999875311233322222 0000000
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
....+ ..+..||.++.+++++++.|.+.+...
T Consensus 141 ~~~~~----~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 141 WGGDT----IFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TTSSE----EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred cCCcc----cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 00001 123457788899999999998887764
No 18
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=7e-17 Score=118.11 Aligned_cols=164 Identities=14% Similarity=0.072 Sum_probs=100.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|++|+|||||+|.|++..... ...|........ ......+.++||||.... ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETV-TYKNLKFQVWDLGGLTSI-----------RPY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEE-EETTEEEEEEEECCCGGG-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEE-EECCEEEEEEECCCChhh-----------hHH
Confidence 345799999999999999999998766421 122332222222 245778999999995321 122
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++..+..... ++..+..... ....|+++++||+|+... ......... +. ...
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 137 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPA 137 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chh
Confidence 334456889999999998665655433 3333222111 122489999999998765 333322221 00 011
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...-+ ..+..|+.++.+++++++.+.+.+.+
T Consensus 138 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 138 LKDRKW---QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTSCE---EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCce---EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 111111 12345778889999999999888765
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=1.4e-17 Score=124.68 Aligned_cols=168 Identities=12% Similarity=0.083 Sum_probs=102.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
......+|+|+|.+|+|||||+|.|++... ......|............+. .+.++||||...
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------- 83 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE----------- 83 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------
Confidence 344557999999999999999999998764 222233333332222223333 469999999322
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+..........+|++++|+++++.-+... ..++..+...... .|+++|+||+|+.......+. .....
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~-------~~~~~ 153 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRKDGSDDVT-------KQEGD 153 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCCTTTTCCC-------HHHHH
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccCCCCccc-------HHHHH
Confidence 22223345568899999999986655555 3456666554332 389999999998642001110 01122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
++.+..... ..+..||.++.+++++++.+.+.+.++.
T Consensus 154 ~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 154 DLCQKLGCV-----AYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHTCS-----CEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHHhcCCC-----EEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 233332221 1234577888999999999988877653
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=7.5e-18 Score=131.76 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~~ 97 (228)
.+|+|+|.+|||||||+|+|+|..... +.. .+.|.+..... ....+..+.++||||..+...... ...+.+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-~~~-pg~Tv~~~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV-GNW-PGVTVEKKTGE-FLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE-EEC-TTSSSEEEEEE-EEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc-cCC-CCceEEEEEEE-EEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 489999999999999999999986422 211 23333333222 234667899999999987653210 1111222211
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.....+|++++|+|+++ ..+.+.+...+.... .|+++++||+|.... ..+.. ....+.+..+
T Consensus 79 -~~~~~~d~vi~VvDas~-----~~~~~~l~~~l~~~~--~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg 140 (256)
T 3iby_A 79 -VIDLEYDCIINVIDACH-----LERHLYLTSQLFELG--KPVVVALNMMDIAEH--RGISI--------DTEKLESLLG 140 (256)
T ss_dssp -HHHSCCSEEEEEEEGGG-----HHHHHHHHHHHTTSC--SCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred -HhhCCCCEEEEEeeCCC-----chhHHHHHHHHHHcC--CCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence 11257899999999983 122223333332222 389999999998654 32211 1222333222
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
. ..+..||.++.++++|++.|.+.
T Consensus 141 ~------~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 C------SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp S------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred C------CEEEEECCCCCCHHHHHHHHHhh
Confidence 1 33456888889999999999887
No 21
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.74 E-value=5.2e-17 Score=123.63 Aligned_cols=171 Identities=19% Similarity=0.101 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||++.|++..... ....|+..........++ ..+.++||||... +.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE----SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-----------YD 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEECCEEEEEEEEECCCchh-----------hh
Confidence 345799999999999999999999876421 112222222211112233 3589999999432 22
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cc
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PK 167 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~ 167 (228)
.........+|++++|+|+++..+.... .++..+...... .|+++|+||+|+... ......+.... ..
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence 2223345678999999999855554443 355555544322 389999999999765 54444332111 11
Q ss_pred hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
...++.+..... ..+..||.++.+++++++.|.+.+.+..
T Consensus 172 ~~~~~~~~~~~~-----~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 172 RGQEMARSVGAV-----AYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHTTCS-----EEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCC-----EEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 223333333321 1134577788999999999988877643
No 22
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=1.5e-16 Score=118.16 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=102.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|++|+|||||+|.+++... .. ...|......... .+...+.++||||.. ++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~---~~~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DT---ISPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SS---CCCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cc---ccccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence 4568999999999999999999998762 11 1223332222222 457789999999942 23333
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+.+|++++|+|++++.+.... .++..+..... ....|+++++||+|+... .......+... ...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~ 148 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEALE-------LDS 148 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHHhC-------hhh
Confidence 44556789999999999866555443 23333332211 112489999999998765 33333222100 011
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+....+ ..+..|+.++.+++++++.+.+.+.++
T Consensus 149 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 149 IRSHHW---RIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ccCCce---EEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 111111 123457778899999999999988874
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=121.58 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=99.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.....+|+|+|++|+|||||+|.|++.... .....+.+.+....... ..+ ..+.++||||.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~---------- 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR---------- 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS----------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh----------
Confidence 345579999999999999999999987652 12222333333322222 334 468999999943322
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.........+|++++|+++++..+.... .++..+..... ..|+++|+||+|+... ..+... ....+
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~ 139 (181)
T 3tw8_B 73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPER--KVVETE-------DAYKF 139 (181)
T ss_dssp -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGG--CCSCHH-------HHHHH
T ss_pred -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchh--cccCHH-------HHHHH
Confidence 1122345678999999999855444443 34454544332 2389999999998654 222110 11222
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....... .+..|+.++.+++++++.|.+.+.+
T Consensus 140 ~~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 140 AGQMGIQ------LFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHHTCC------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCe------EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2222222 2345777889999999999887765
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=9.8e-17 Score=119.21 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
+..+|+|+|++|+|||||+|.|++... ......|+...........+. .+.++||||....... ...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence 347999999999999999999998764 222223332222222223443 3778999995543221 112
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
++ ..+|++++++++++.-+.... .++..+...... ...|+++++||+|+... ........ ++.+
T Consensus 72 ~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~--~~~~~~~~--------~~~~ 136 (189)
T 4dsu_A 72 YM----RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR--TVDTKQAQ--------DLAR 136 (189)
T ss_dssp HH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC--SSCHHHHH--------HHHH
T ss_pred HH----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc--ccCHHHHH--------HHHH
Confidence 22 245999999999854444333 344545443322 22489999999998754 22222222 2333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..... .+..||.++.+++++++.|.+.+.+
T Consensus 137 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIP------FIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCC------EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32222 2345777889999999998887765
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=6.1e-17 Score=118.29 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||+|.+++....... ....+......... .++ ..+.++||||... +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hhh
Confidence 3479999999999999999999977642111 11222222211211 222 3578899999432 222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++|+++++..+.... .++..+....... .|+++++||+|+... +.+.. ....++.+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE--RHVSI-------QEAESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence 334456788999999999854444433 3555555544333 389999999998653 22110 01223333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.....+ +..||.++.+++++++.|.+.+.+
T Consensus 140 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 140 SVGAKH------YHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HTTCEE------EEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HcCCeE------EEecCCCCCCHHHHHHHHHHHHhh
Confidence 333222 235777889999999998877654
No 26
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.73 E-value=2.5e-16 Score=114.44 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||+|.+++..... ....+............+ ..+.++||||..... .....+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE----KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc----cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHH
Confidence 3689999999999999999999765421 112222222111122333 348899999954321 111222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+ ...|++++++++.+..+.... .++..+...... ...|+++++||+|+... +++... ...++.+.
T Consensus 72 ~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 137 (167)
T 1kao_A 72 I----KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE--REVSSS-------EGRALAEE 137 (167)
T ss_dssp H----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred h----ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc--ccCCHH-------HHHHHHHH
Confidence 2 345999999999854444332 344444443321 12489999999998654 322110 11222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... ..+..|+.++.+++++++.|.+.+.+
T Consensus 138 ~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGC------PFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HTS------CEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hCC------CEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 221 22345778889999999999887754
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.72 E-value=2.8e-16 Score=116.12 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.+..+|+|+|++|+|||||+|.|++... ......|...........++ ..+.++||||.......
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 70 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF--------- 70 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC---------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH---------
Confidence 3457999999999999999999996654 12222333322222222344 35789999996654221
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+|++++++++++.-+.... .++..+....... ..|+++|+||+|+... ..+.. ....++.
T Consensus 71 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~ 138 (181)
T 3t5g_A 71 --PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHME--RVISY-------EEGKALA 138 (181)
T ss_dssp --CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT--CCSCH-------HHHHHHH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECccchhc--ceecH-------HHHHHHH
Confidence 11234578999999999854444443 2444444433221 2389999999998643 22211 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
+..... .+..||.++.+++++++.+.+.+....+
T Consensus 139 ~~~~~~------~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 139 ESWNAA------FLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHTTCE------EEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HHhCCc------EEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 333222 2345778889999999999888877543
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=5.8e-17 Score=136.17 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|++|+|||||+|.|++.... .+...+.++.........+.+..+.++||||+..... ....+.+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--chHHHHHHHHHHH
Confidence 37999999999999999999987641 1222233333333333346777899999999875311 1111233333444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
..+.+|++++|+|+..+++..+....+++... .+|+++|+||+|.... . .... ..++... .
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~--~--~~~~-------~~~~~~l-g-- 138 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE--F--EREV-------KPELYSL-G-- 138 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH--H--HHHT-------HHHHGGG-S--
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc--c--HHHH-------HHHHHhc-C--
Confidence 55688999999999888888776655555432 2379999999997532 1 1111 0111111 1
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+...+..||.++.++.+|++.|.+.+++.
T Consensus 139 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 139 ---FGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp ---SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ---CCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 11234578899999999999999888764
No 29
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=7.3e-17 Score=120.29 Aligned_cols=165 Identities=14% Similarity=0.054 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
++..+|+|+|..|+|||||+|.|++.... .....|........ ......+.++||||.. ++...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~ 83 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKI-TKGNVTIKLWDIGGQP-----------RFRSM 83 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEE-EETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEE-EeCCEEEEEEECCCCH-----------hHHHH
Confidence 34578999999999999999999977642 11223333333322 2457789999999932 12222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++.-+.... .++..+..... ....|+++|+||+|+... .......+... ...
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~-------~~~ 153 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEKMN-------LSA 153 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHHhC-------hhh
Confidence 22334678999999999855454443 23333322111 122489999999998754 33222222100 011
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+..... ..+..||.++.+++++++.|.+.+.+
T Consensus 154 ~~~~~~---~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 154 IQDREI---CCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hccCCe---eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 111111 12345778889999999998876654
No 30
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.72 E-value=1.3e-16 Score=118.88 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
+..+|+++|.+|+|||||+|.|++..... ....|+...........+ ..+.++||||... +..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEECCEEEEEEEEECCChHH-----------HHH
Confidence 34789999999999999999999875421 112222222222222333 3488999999432 222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.........|+++++++++...+.... .++..+...... ...|+++++||+|+... ...... ..++.+
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTR--TVDTKQ--------AHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcc--cCCHHH--------HHHHHH
Confidence 233445678999999999854444433 345555444321 12389999999998653 211111 222222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...- ..+..|+.++.+++++++.|.+.+.+.
T Consensus 154 ~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 154 SYGI------PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHTC------CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCC------eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2221 223457777899999999998877663
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.72 E-value=6e-17 Score=119.56 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=93.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.....+|+|+|++|+|||||+|.|++...... .....+.+........ .....+.++||||.. .+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~ 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQE-----------RF 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCCh-----------Hh
Confidence 34568999999999999999999998764211 1112222222222221 123468999999932 22
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
..........+|++++|+++++..+.... .++..+..... .....|+++++||+|+... .... ......
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~v------~~~~~~ 143 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIV------SEKSAQ 143 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCS------CHHHHH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc--cccC------CHHHHH
Confidence 23333456788999999999854444333 34555544432 0122389999999998543 2100 000122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
++.+..... ..+..|+.++.+++++++.|.+.+.++
T Consensus 144 ~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 144 ELAKSLGDI-----PLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHTTSC-----CEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-----eEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 233211111 123356777899999999998776653
No 32
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=118.89 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+.....+|+|+|.+|+|||||+|.|++..... ......+.+....... .++ ..+.++||||... ...
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-------~~~ 90 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-------FNS 90 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGG-------GHH
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEE-ECCeEEEEEEEeCCCcHH-------HHH
Confidence 344456789999999999999999999876421 1122233333222222 233 3689999999432 112
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
....++ ..+|++++|+|+++..+.... .++..+....... .|+++|+||+|+... +.+.. ....
T Consensus 91 ~~~~~~----~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~--~~v~~-------~~~~ 155 (192)
T 2il1_A 91 ITSAYY----RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REITR-------QQGE 155 (192)
T ss_dssp HHHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHH
T ss_pred HHHHHh----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHH
Confidence 222222 356999999999855555443 3455555443322 389999999998654 32210 0122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
++.+...... .+..||.++.+++++++.|.+.+.+
T Consensus 156 ~~~~~~~~~~-----~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 156 KFAQQITGMR-----FCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHTSTTCE-----EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCe-----EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2333221111 1245777889999999998877754
No 33
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=2.8e-16 Score=118.32 Aligned_cols=167 Identities=19% Similarity=0.175 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+..+..+|+|+|.+|+|||||+|.|++.... .....|.......... .....+.++||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS----EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC----SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence 4456789999999999999999999987652 2222333322222111 23456899999996543321
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.......+|++++|+++++.-+.... .++..+...... ...|+++|+||+|+... ..+... ....
T Consensus 89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~~ 154 (201)
T 3oes_A 89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE--REVQAV-------EGKK 154 (201)
T ss_dssp ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG--CCSCHH-------HHHH
T ss_pred ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc--cccCHH-------HHHH
Confidence 22344678999999999854444333 244444333221 12489999999998754 322110 1122
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+....... .+..||.++.+++++++.|.+.+.+..
T Consensus 155 ~~~~~~~~------~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 155 LAESWGAT------FMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHTCE------EEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCe------EEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 33332222 234577888999999999988887643
No 34
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=2.5e-16 Score=117.39 Aligned_cols=168 Identities=17% Similarity=0.104 Sum_probs=100.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
.......+|+|+|++|+|||||+|.|++...... .....+.+........ .....+.++||||.......
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 87 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------- 87 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-------
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-------
Confidence 3334457999999999999999999998764211 1112222222222111 12346899999996543221
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.......+|++++|+++++..+.... .++..+....... .|+++|+||+|+... +.+.. ....+
T Consensus 88 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~ 152 (189)
T 2gf9_A 88 ----TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDE--RVVPA-------EDGRR 152 (189)
T ss_dssp ----GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred ----HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cCCCH-------HHHHH
Confidence 22344678999999999854444333 3455554432222 389999999998654 22210 01222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.+...-. .+..|+.++.+++++++.|.+.+.++
T Consensus 153 ~~~~~~~~------~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 153 LADDLGFE------FFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHTCE------EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCe------EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33332222 23457778899999999998877653
No 35
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.71 E-value=4.6e-17 Score=128.61 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~ 96 (228)
..+|+|+|.+|||||||+|+|+|.... .+.. .+.|.+...... ...+..+.++||||..+...... ...+.+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~-~g~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNW-AGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE-EEEC-TTSSSEEEEEEE-ECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc-cCCC-CCeeEEEEEEEE-EeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 378999999999999999999998742 2221 133333333222 24567899999999987653111 111122221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
+ ...+.+|++++|+|+++ + .....+...+... . .|+++++||+|.... ..+.. ....+.+..
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~--~~~~~--------~~~~l~~~l 141 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK--QNIRI--------EIDALSARL 141 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH--TTEEE--------CHHHHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh--hhHHH--------HHHHHHHhc
Confidence 1 12357899999999983 1 1222233333322 2 389999999998644 22211 122233322
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+. ..+..||.++.++++|++.|.+.++..
T Consensus 142 g~------~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 142 GC------PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp TS------CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred CC------CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 21 234567888999999999998877654
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.2e-16 Score=117.85 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|.|++....... .....+......... ..+ ..+.++||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEE-ETTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 34579999999999999999999987642111 111222222211111 233 3689999999432 22
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+|++++|+++++..+... ..++..+....... .|+++++||+|+... +.+... ...++.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE--RVVKRE-------DGEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC--CCSCHH-------HHHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc--cccCHH-------HHHHHH
Confidence 223344567899999999985444443 34555555543322 389999999998754 321110 011222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+..... .+..||.++.+++++++.+.+.+.+.
T Consensus 144 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 144 KEYGLP------FMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHTCC------EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHcCCe------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 222211 23457778899999999998887653
No 37
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=5.8e-16 Score=116.45 Aligned_cols=172 Identities=18% Similarity=0.086 Sum_probs=98.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.......+|+|+|..|+|||||++.+++.... .....|+..........++. .+.++||||.......
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------ 84 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP----TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL------ 84 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH------
Confidence 34556689999999999999999999987641 12223332222222223343 5779999997554321
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC----
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC---- 165 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~---- 165 (228)
.......+|++++|+|+++..+.... .++..+...... .|+++|+||+|+... ......+....
T Consensus 85 -----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v 154 (201)
T 2q3h_A 85 -----RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK---APIILVGTQSDLRED--VKVLIELDKCKEKPV 154 (201)
T ss_dssp -----GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---SCEEEEEECGGGGGC--HHHHHHHHTTTCCCC
T ss_pred -----hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhc--hhhhhhhcccccccC
Confidence 22345678999999999865555554 355556554332 389999999998754 32222221110
Q ss_pred -CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 166 -PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
......+.+..... ..+..||.++.+++++++.|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 155 PEEAAKLLAEEIKAA-----SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CHHHHHHHHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCc-----EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 11222333322220 11345777889999999988777655
No 38
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=8.5e-17 Score=126.88 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|++|||||||+|+|+|... ..+.. ...|.+..... ....+..+.++||||..+....... ..+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-PGVTVEKKEGI-MEYREKEFLVVDLPGIYSLTAHSID--ELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-TTSSCEEEEEE-EEETTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeEEEeeEEE-EEECCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence 36899999999999999999999865 22221 22333333222 2346677999999998876543221 1111111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++++|+++ . + +.+.+........ ..|+++++||+|+... ..... ....+.+..+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~---~-~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L---M-RNLFLTLELFEME-VKNIILVLNKFDLLKK--KGAKI--------DIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H---H-HHHHHHHHHHHTT-CCSEEEEEECHHHHHH--HTCCC--------CHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCc-c---h-hhHHHHHHHHhcC-CCCEEEEEEChhcCcc--cccHH--------HHHHHHHHcCC
Confidence 12357899999999983 2 1 2222222222212 0389999999997643 22111 12233333332
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
..++.++.++.+++++++.+.+.+....
T Consensus 141 ------~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 ------PVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp ------CEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred ------cEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 2235677788999999999988887654
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=2.2e-17 Score=138.61 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...+|+|+|++|+|||||+|+|++...... .....|+...........+..+.++||||+.......+.. +.+....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~--~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV--SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEE--C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC-SHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceee--cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH-HHHHHHH
Confidence 457999999999999999999999864211 2222233322222223566779999999986543321111 1111110
Q ss_pred -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+|++++.+..+..++..+... . +|+++++||+|+.........+..+. +.+.....
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~ 320 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL 320 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcccC
Confidence 0123456999999999988998888776665431 2 37999999999876411112222222 22222111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.. ...+..||.++.+++++++.+.+.+....
T Consensus 321 ~~-----~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 321 DY-----APILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TT-----SCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CC-----CCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 11 12244678888999999998888877643
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=119.82 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|+|++...... .....+.+....... ..+ ..+.++||||......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh----------
Confidence 3457899999999999999999998765221 122333333333222 333 4689999999433211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
........+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... +.+... ...++.
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~ 148 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDYT-------TAKEFA 148 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCHH-------HHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccCHH-------HHHHHH
Confidence 11123356799999999985444333 34555555543333 389999999998754 322110 122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
......+ +..||.++.+++++++.|.+.+.+..
T Consensus 149 ~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 149 DSLGIPF------LETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHTTCCE------EEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHcCCcE------EEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3333222 33567778999999999988877643
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=3.6e-17 Score=120.46 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||+|.|++...... .....+.+....... .. ...+.++||||..... ....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-------~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIE-VSGQKIKLQIWDTAGQERFR-------AVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEE-ETTEEEEEEEEECTTGGGTC-------HHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEE-ECCeEEEEEEEECCCChHhh-------hhHH
Confidence 3457999999999999999999998765211 111222222111111 22 2468999999943221 1222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.+ ...+|++++|+|++...+.... .++..+....... .|+++++||+|+... +.+.. ....++.
T Consensus 83 ~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~ 147 (179)
T 1z0f_A 83 SY----YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQ--RDVTY-------EEAKQFA 147 (179)
T ss_dssp HH----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred HH----hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 22 3466999999999855444433 3455555443222 389999999998643 22110 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...-. .+..|+.++.+++++++.+.+.+.+
T Consensus 148 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 148 EENGLL------FLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHTTCE------EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 322211 2335777889999999988776643
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.8e-16 Score=115.26 Aligned_cols=164 Identities=20% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||+|.|++........ ....+. ...... .++ ..+.++||||.... +...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~~~D~~g~~~~---------~~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDV--YERTLT-VDGEDTTLVVVDTWEAEKL---------DKSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSE--EEEEEE-ETTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccce--eEEEEE-ECCEEEEEEEEecCCCCcc---------chhh
Confidence 34799999999999999999999876522211 111121 111111 233 35789999995431 0111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.........|++++|+++++.-+.... .++..+..... ....|+++|+||+|+... +.+... ....+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~--~~v~~~-------~~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC--REVSVE-------EGRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT--CCSCHH-------HHHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc--cccCHH-------HHHHHHH
Confidence 122344577999999999855444443 34443433211 112489999999998754 322110 0112222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..... .+..||.++.+++++++.|.+.+..
T Consensus 140 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 140 VFDCK------FIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp HHTSE------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCe------EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 2345777889999999999887765
No 43
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=2e-16 Score=115.18 Aligned_cols=162 Identities=19% Similarity=0.036 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|++|+|||||+|.|++....... ....++...... .......+.++||||.... .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-----------~~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIV-VDGEEASLMVYDIWEQDGG-----------RWLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEE-ETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEEEE-ECCEEEEEEEEECCCCccc-----------hhhhh
Confidence 368999999999999999999987642111 111121111111 1112335789999994432 12222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......|+++++++++++-+.... .++..+..... ....|+++|+||+|+... ..+.... ...+.....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~~~~ 137 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS--REVSVDE-------GRACAVVFD 137 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS--CCSCHHH-------HHHHHHHTT
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc--cccCHHH-------HHHHHHHhC
Confidence 334577999999999855444433 24444433211 122489999999998754 3221111 112222222
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. ..+..||.++.+++++++.|.+.+.+
T Consensus 138 ~------~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 C------KFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp C------EEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred C------cEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 1 12345778889999999999887765
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=9.6e-17 Score=118.09 Aligned_cols=166 Identities=16% Similarity=0.044 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|.|++...... .....+.+....... ..+ ..+.++||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hh
Confidence 3457899999999999999999997754211 111222222122222 233 3689999999322 22
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
..........|+++++++++...+... ..++..+...... ....|+++++||+|.... ....+. ..+
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHH
Confidence 334455678899999999985444433 2355555544321 012389999999998643 211111 222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.+..... ..+..|+.++.+++++++.+.+.+.+.
T Consensus 141 ~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 141 WCRDNGDY-----PYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHTTCC-----CEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHhcCCc-----eEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 22211111 123457778899999999998877653
No 45
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=1.2e-16 Score=120.37 Aligned_cols=170 Identities=15% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
......+|+|+|.+|+|||||++.+++...... ...|+..........++ ..+.++||||....
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------- 86 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYIADIEVDGKQVELALWDTAGQEDY---------- 86 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS----CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcc----cCCcccceEEEEEEECCEEEEEEEEECCCchhH----------
Confidence 344567999999999999999999998765211 11122111111111233 36889999994321
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----- 165 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~----- 165 (228)
..........+|++++|++++...+.... .++..+...... .|+++++||+|+... ......+....
T Consensus 87 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 160 (201)
T 2gco_A 87 -DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILVGNKKDLRQD--EHTRRELAKMKQEPVR 160 (201)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCC
T ss_pred -HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEecHHhhcC--ccchhhhcccccCcCC
Confidence 12223345688999999999854444443 355555554322 389999999999765 44333332211
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.....++.+..... ..+..||.++.+++++++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 161 SEEGRDMANRISAF-----GYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc-----EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 11223333333221 1134577788999999998877653
No 46
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.71 E-value=2.5e-17 Score=133.60 Aligned_cols=174 Identities=18% Similarity=0.121 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.|+|+|.+|||||||+|+|++..... .....|+........... ...+.++||||+.+.......+...+.+.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i---~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKI---ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE---SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcc---ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 58999999999999999999875321 122223222222222233 3679999999975422222222234444333
Q ss_pred ccCCccEEEEEEeCCC---CCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 100 AKDGIHAFLVVFSVTN---RFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~---~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
..+++++|+|+++ +-+..+.. ++..+......-..+|+++|+||+|+... ++. +.++.+.
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~-----------~~~l~~~ 299 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEK 299 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHH
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHH-----------HHHHHHH
Confidence 4599999999974 34444433 44444433211123489999999998754 321 1222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCCh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 218 (228)
.... ...+..||.++.++++|++.|.+.+.+....++++
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 2211 23456788899999999999999998876644443
No 47
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=2.5e-17 Score=120.27 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||+|.|++...... ...+.+.+....... ..+ ..+.++||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhh-----------
Confidence 36899999999999999999998764211 111222222222222 222 35889999995432211
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|++++...+... ..++..+....... .|+++++||+|+... ....+. ..++.+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence 1122346799999999985444333 34555555543222 389999999998543 211111 1222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..- ..+..|+.++.+++++++.|.+.+.++
T Consensus 137 ~~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 137 LGI------PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HTC------CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCC------eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 221 223457778899999999998888764
No 48
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=4.4e-17 Score=137.49 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=109.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.....+|+++|.+|+|||||+|+|++....... ....|+...........+..+.++||||+.......+.. +.+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~--~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS--NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC--C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC-SHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccC--CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH-HHHHH
Confidence 345689999999999999999999987632222 222232222222222466789999999987644321111 11111
Q ss_pred HHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~-~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
... ...+.+|++++++|+..+++..+..++..+... . +|+++|+||+|+........+++.+. +++...
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~---~--~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 338 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 338 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence 111 123456999999999988888888877777652 2 37999999999875411223333332 222222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
.... ...+..||.++.+++++++.+.+.+.....
T Consensus 339 ~~~~-----~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 339 FLDY-----APILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp GGTT-----SCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred cCCC-----CCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 2111 123446788889999999999888876543
No 49
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=4.4e-17 Score=123.13 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
..+..+|+|+|.+|+|||||++.+++... ......|+..........++. .+.++||||....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------- 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG-----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh-----------
Confidence 34568999999999999999999997654 112222332222222223333 4669999995322
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----C
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----P 166 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~ 166 (228)
..........+|++++|++++++.+.... .++..+...... .|+++|+||+|+... ....+.+.... .
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence 12233455688999999999865555554 355555554322 389999999998765 44433333211 1
Q ss_pred chHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
.....+.+..... ..+..||.++.+++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCc-----EEEEeeCCCCCCHHHHHHHHHHH
Confidence 1122222222211 12345778889999999988764
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=6e-16 Score=114.03 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=100.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+.....+|+|+|.+|+|||||+|+|++... ......|+..........++ ..+.++||||........
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----- 74 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR----- 74 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH-----
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH-----
Confidence 3455668999999999999999999998754 22223333333222222333 358899999966543211
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
..++ ...|++++|+++++..+.... .++..+...... ...|+++|+||+|+... +.+... ...
T Consensus 75 --~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~ 138 (181)
T 2fn4_A 75 --EQYM----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ--RQVPRS-------EAS 138 (181)
T ss_dssp --HHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG--CCSCHH-------HHH
T ss_pred --HHHH----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHH-------HHH
Confidence 1122 245999999999854443332 344444333221 12389999999998754 332110 112
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.+.......+ +..|+.++.+++++++.|.+.+.+..
T Consensus 139 ~~~~~~~~~~------~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 139 AFGASHHVAY------FEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHTTCEE------EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCeE------EEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 2222222122 23567778999999999988877643
No 51
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=1.1e-16 Score=121.88 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=102.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
+.+.....+|+|+|..|+|||||++.|++.... .....|........... ....+.++||||....
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------- 88 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-------- 88 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG--------
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCC----CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH--------
Confidence 344556689999999999999999999987652 22222332222211112 2346899999994321
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC---
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--- 165 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--- 165 (228)
..........+|++++|+|+++.-|... ..|+..+.....+ .|+++|.||+|+... ......+....
T Consensus 89 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~ 160 (214)
T 3q3j_B 89 ---DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLIGCKTDLRTD--LSTLMELSHQKQAP 160 (214)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTT---SEEEEEEECGGGGGC--HHHHHHHHHTTCCC
T ss_pred ---HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccc--hhhhhhhcccccCc
Confidence 1223345568899999999986666655 3566777665432 389999999998753 21111111100
Q ss_pred --CchHHHHHHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHHHHhc
Q 027090 166 --PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQN 211 (228)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 211 (228)
......+.+..... ..+..||.++.+ ++++++.+.+.+...
T Consensus 161 v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 161 ISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 11122333332220 113357778888 999999998877664
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=2.3e-16 Score=117.01 Aligned_cols=163 Identities=16% Similarity=0.104 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|.|++..... ......+.+....... ..+ ..+.++||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 345799999999999999999999876521 1122223222222222 233 4689999999332 22
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+|++++|+++++..+.... .++..+....... .|+++++||+|+... +.+.. ....++.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD--REVTF-------LEASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 3344456788999999999854444333 3455444443322 389999999998643 22210 0122223
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...-.+ +..|+.++.+++++++.+.+.+.+
T Consensus 143 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 143 QENELMF------LETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp HHTTCEE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCEE------EEecCCCCCCHHHHHHHHHHHHHH
Confidence 2222211 234677789999999988776654
No 53
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.71 E-value=6.8e-16 Score=111.92 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+++|++|+|||||+|.|++..... ....+............+ ..+.++||||..... .....++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD----ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc----ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhh
Confidence 689999999999999999999875421 112222222221112233 347899999965432 1122222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
. ..|++++++++++..+... ..++..+...... ...|+++++||+|.... ...... ..++.+..
T Consensus 73 ~----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 137 (166)
T 2ce2_X 73 R----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARSY 137 (166)
T ss_dssp H----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHHH
T ss_pred c----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHHc
Confidence 2 4599999999985444333 3355555544321 12389999999998753 221111 22222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.-. .+..++.++.+++++++.|.+.+.+
T Consensus 138 ~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 138 GIP------YIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TCC------EEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred CCe------EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 222 2335667789999999999887754
No 54
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=117.45 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
......+|+|+|..|+|||||++.+++.... .....|+...........+ ..+.++||||......
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------- 84 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFI----SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-------- 84 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCC----cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------
Confidence 3445589999999999999999999987641 2223333322221112233 3578999999654322
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.. ....+|++++|++++++-+.... .++..+...... ....|+++++||+|+... +.+.. ....
T Consensus 85 ~~~----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~-------~~~~ 151 (187)
T 3c5c_A 85 CER----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVTK-------AEGV 151 (187)
T ss_dssp THH----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSCH-------HHHH
T ss_pred HHH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccCH-------HHHH
Confidence 111 22457999999999855455443 355555544311 012389999999998643 22210 0122
Q ss_pred HHHHhcCCeEEEeeCCCcccc-cchHHHHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~ 210 (228)
++.+...-. .+..|| .++.+++++++.|.+.+.+
T Consensus 152 ~~~~~~~~~------~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 152 ALAGRFGCL------FFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHTCE------EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCc------EEEEeecCccccHHHHHHHHHHHHhh
Confidence 222222211 224567 6789999999998877653
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=5.7e-17 Score=122.95 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=96.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+.....+|+|+|++|+|||||+|.|++...... .....+.+....... ..+ ..+.++||||.......
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~------- 85 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRTI------- 85 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTCC-------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHHH-------
Confidence 344568999999999999999999997764211 112222222222222 233 46899999994432211
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.......+|++++|++++...+... ..++..+....... .|+++|+||+|+... ...... ..+
T Consensus 86 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~ 149 (213)
T 3cph_A 86 ----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEA 149 (213)
T ss_dssp ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHH
T ss_pred ----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHH
Confidence 1122356799999999985444333 34555555543322 389999999998533 211111 122
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...... ..+..++.++.+++++++.|.+.+.+
T Consensus 150 ~~~~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 150 LAKELGI------PFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHTC------CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHcCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2222221 22345677788999999888777665
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.70 E-value=7.1e-17 Score=119.22 Aligned_cols=164 Identities=20% Similarity=0.164 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
....+|+|+|++|+|||||+|.|++....... ....+........... ....+.++||||.... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----------HS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-----------GG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--CCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-----------hh
Confidence 44578999999999999999999987652221 1122222222221111 1346899999994321 11
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++|+|+++..+... ..++..+....... .|+++++||+|+... +.+.. ....++.+
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~--~~~~~-------~~~~~~~~ 145 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA--RKVTA-------EDAQTYAQ 145 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCH-------HHHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc--ccCCH-------HHHHHHHH
Confidence 11223356799999999985555443 34555555443222 379999999998654 22110 01222333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..... .+..|+.++.+++++++.|.+.+.+
T Consensus 146 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 ENGLF------FMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HTTCE------EEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HcCCE------EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 22222 2335677789999999998876654
No 57
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.5e-16 Score=117.16 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|.+|+|||||+|.|++........ |......... .++..+.++||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIV-INNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEEE-ETTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEEE-ECCEEEEEEECCCCHhHH-----------HH
Confidence 345899999999999999999999776532211 2211112222 356789999999964321 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+... ....+..+. ...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~---------~~~ 144 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF---------LKL 144 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH---------HTG
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH---------hCh
Confidence 112235779999999998666655543 3333333211 122489999999998754 222221111 111
Q ss_pred --cC-CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 176 --CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 176 --~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
.. ..+ ..+..||.++.+++++++.|.+.+....
T Consensus 145 ~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 145 TSIKDHQW----HIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp GGCCSSCE----EEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred hhhcCCCc----EEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 11 111 1234577888999999999988876643
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.2e-17 Score=122.01 Aligned_cols=165 Identities=21% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.....+|+|+|++|+|||||+|.|++...... . .............. ......+.++||||.....
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 86 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-I-SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH----------- 86 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-C-CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCC-c-CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------
Confidence 34457999999999999999999998764211 1 11122222111111 1234468999999943211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+|++++|+++++..+.... .++..+....... .|+++|+||+|+... +.+.. ....++.
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~v~~-------~~~~~~~ 155 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDI--REVPL-------KDAKEYA 155 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 1112233567999999999855554443 3555554433222 389999999998643 22110 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+..... .+..|+.++.+++++++.|.+.+.+
T Consensus 156 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 156 ESIGAI------VVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HTTTCE------EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHcCCE------EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 322211 2345777889999999999887655
No 59
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=1.1e-16 Score=135.12 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
+.+|+|+|++|+|||||+|+|++.... .......|+..........++..+.++||||+.+.....+ ..-.....
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a--~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve---~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA--IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE---HEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH---HHHHHHHH
Confidence 468999999999999999999987531 1222233333222222335677899999999865321111 11112223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++|+|++...+..+......+...+.. +|+++|+||+|+... ..... +. +.+. ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~---~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~-~~--- 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPA---AKFLTVANKLDRAAN--ADALI--RA-----IADG-TG--- 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTT---SEEEEEEECTTSCTT--THHHH--HH-----HHHH-HT---
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCC---CCEEEEEECcCCCCc--cchhH--HH-----HHhc-CC---
Confidence 355789999999999977776332222212222232 389999999999765 43321 11 1111 01
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
...+..||.++.++++|++.|.+.+.
T Consensus 372 -----~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 -----TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp -----SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred -----CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 12345688889999999999999887
No 60
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=1.8e-16 Score=117.85 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~ 96 (228)
+..+|+|+|++|+|||||+|+|++...+.... ...|........ ..++..+.++||||.......... +.+. .+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANSID--EIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEE-EETTEEEEEEECCCCSCCSSSSHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEE-EeCCcEEEEEECCCcCccccccHH--HHHHHHH
Confidence 45799999999999999999999875432221 122333222222 245678999999998765432111 1111 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
+.. ..++++++++|..+ + .....++..+. ... .|+++++||+|.... ..+. ....++.+..
T Consensus 81 ~~~--~~~~~~i~v~d~~~-~-~~~~~~~~~~~---~~~--~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~ 141 (188)
T 2wjg_A 81 IIN--EKPDLVVNIVDATA-L-ERNLYLTLQLM---EMG--ANLLLALNKMDLAKS--LGIE--------IDVDKLEKIL 141 (188)
T ss_dssp HHH--HCCSEEEEEEEGGG-H-HHHHHHHHHHH---TTT--CCEEEEEECHHHHHH--TTCC--------CCHHHHHHHH
T ss_pred Hhc--cCCCEEEEEecchh-H-HHHHHHHHHHH---hcC--CCEEEEEEhhhcccc--ccch--------HHHHHHHHHh
Confidence 211 24689999999872 1 11222333332 222 379999999998643 2221 1133344333
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
... .+..|+.++.+++++++.+.+.+.+...
T Consensus 142 ~~~------~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 142 GVK------VVPLSAAKKMGIEELKKAISIAVKDKKT 172 (188)
T ss_dssp TSC------EEECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred CCC------eEEEEecCCCCHHHHHHHHHHHHHhccC
Confidence 322 2345777889999999999999887654
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=119.99 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||++.|++..... ....+.+.+....... .++ ..+.++||||... +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLE-IQGKRVKLQIWDTAGQER-----------FR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------HH
Confidence 334789999999999999999998776411 1111111222222222 233 4689999999432 11
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+|++++|+|+++..+.... .++..+....... .|+++|+||+|+... +.+.. ....++.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~v~~-------~~~~~~~ 161 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSEL--REVSL-------AEAQSLA 161 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccc--cccCH-------HHHHHHH
Confidence 1222334577999999999854444332 4555555443222 389999999998753 22110 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 214 (228)
+..... ..+..||.++.+++++++.|.+.+.++...
T Consensus 162 ~~~~~~-----~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 197 (201)
T 2hup_A 162 EHYDIL-----CAIETSAKDSSNVEEAFLRVATELIMRHGG 197 (201)
T ss_dssp HHTTCS-----EEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCC-----EEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 332220 113457778899999999998887775443
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=1.8e-16 Score=119.39 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..+|+|+|++|+|||||+|.|++...... .....+.+........ .....+.++||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 47999999999999999999998765221 1112222222222221 1234689999999532 12223
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+++++..+.... .++..+....... .|+++|+||+|+... +.+.. ....++.+..
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 143 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDE--RVVSS-------ERGRQLADHL 143 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTS--CCSCH-------HHHHHHHHHH
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcc--cccCH-------HHHHHHHHHC
Confidence 3445678999999999854444333 3444444432222 389999999998654 22210 0122233333
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.-.+ +..||.++.+++++++.|.+.+.+
T Consensus 144 ~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 144 GFEF------FEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TCEE------EECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCeE------EEEECCCCCCHHHHHHHHHHHHHH
Confidence 2222 345667778888888887766544
No 63
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=1.8e-16 Score=117.50 Aligned_cols=169 Identities=15% Similarity=0.030 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
+..+|+|+|++|+|||||++.+++..... ....|+...........+ ..+.++||||.... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCC----CcCCcccceeEEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence 34799999999999999999999765421 112222221111112233 34679999995432 12
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cch
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKP 168 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~ 168 (228)
........+|++++|++++++.+.... .++..+...... .|+++++||+|+... ......+.... ...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCC---CCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence 222345688999999999855555444 355555554332 389999999998754 33333222111 112
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..++.+..... ..+..||.++.+++++++.+.+.+.+.
T Consensus 144 ~~~~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 144 GLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCc-----EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 23333333220 123457778899999999998887653
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.70 E-value=5.9e-17 Score=118.20 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..+|+|+|++|+|||||+|.|++..... ......+.......... .....+.++||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE--FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence 4789999999999999999999765421 11122222222222211 12346899999994321 1111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|++++++.+.... .++..+....... .|+++++||+|+... +.+.. ....++....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK--RAVDF-------QEAQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc--cccCH-------HHHHHHHHHc
Confidence 2233567999999999855444333 3444444433223 378889999998643 22110 0122222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
...+ +..||.++.+++++++.|.+.+.
T Consensus 142 ~~~~------~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 SLLF------METSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEE------EECCTTTCTTHHHHHHHHHHTSC
T ss_pred CCeE------EEEeCCCCCCHHHHHHHHHHHHh
Confidence 2111 23577788999999999877654
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=2.7e-16 Score=117.27 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE-eEeeeeeC-----------CcEEEEEeCCCCCCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD-----------GQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~iDtpG~~~~~~ 84 (228)
....+|+|+|++|+|||||+|.|++...... ...+...+.. ..... .. ...+.++||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH---
Confidence 3457999999999999999999998654211 1112222221 11111 22 24689999999532
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
+..........+|++++|+|++...+... ..++..+...... ...|+++++||+|+... +.+..
T Consensus 83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~---- 147 (195)
T 3bc1_A 83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQ--RAVKE---- 147 (195)
T ss_dssp --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGG--CCSCH----
T ss_pred --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCH----
Confidence 12223344567899999999985544443 3455555444321 12389999999998653 22110
Q ss_pred cCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....++.+...- ..+..|+.++.+++++++.|.+.+.+
T Consensus 148 ---~~~~~~~~~~~~------~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 148 ---EEARELAEKYGI------PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ---HHHHHHHHHHTC------CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCC------CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 012223222221 12345677789999999988877665
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=1.1e-17 Score=127.58 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||+|.|++....... .................+ ..+.++||||.........
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD------- 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence 34579999999999999999999977642111 111222222221111122 4689999999544322111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.....+|++++|++++++.+.... .++..+....... .|+++|+||+|+... ..+.. .+..
T Consensus 80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~----------~~~~ 141 (218)
T 4djt_A 80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISK----------KLVM 141 (218)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCH----------HHHH
T ss_pred ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCH----------HHHH
Confidence 123467999999999865554443 4556666555443 389999999998754 22211 1111
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 215 (228)
..+....+ ..+..||.++.+++++++.|.+.+.+.....
T Consensus 142 ~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 142 EVLKGKNY---EYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp HHTTTCCC---EEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHcCC---cEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence 22221111 1234577788999999999999988765443
No 67
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=4.7e-16 Score=113.10 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+++|++|+|||||+|.|++.... .....|............+ ..+.++||||.... ......+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC----CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHHHHHH
Confidence 479999999999999999999987642 1122222222222112333 35889999994432 1112222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
...+|++++++++++..+... ..++..+...... ...|+++++||+|+... +++.. ....+..+.
T Consensus 73 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 138 (168)
T 1u8z_A 73 ----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK--RQVSV-------EEAKNRADQ 138 (168)
T ss_dssp ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred ----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc--CccCH-------HHHHHHHHH
Confidence 235699999999985444333 3345555554431 12389999999998654 22110 012222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... .+..|+.++.+++++++.+.+.+.+
T Consensus 139 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 139 WNVN------YVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HTCE------EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCe------EEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 2212 2345677789999999999887654
No 68
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=3e-16 Score=113.96 Aligned_cols=160 Identities=12% Similarity=0.030 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|++|+|||||+|.+++...... ..|......... .....+.++||||... +.......
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~ 64 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY 64 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEE-CSSCEEEEEECCCCGG-----------GHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEE-ECCEEEEEEEcCCChh-----------hHHHHHHH
Confidence 799999999999999999987654211 123222222222 4567899999999532 11222334
Q ss_pred cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
...+|++++|+|++++-+..... ++..+..... ....|+++++||+|+... .......+... ...+...
T Consensus 65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~~~~~ 134 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDKLG-------LHSLRHR 134 (164)
T ss_dssp TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGGCSSC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHHhC-------cccccCc
Confidence 56789999999998654544332 3333322111 112389999999998754 33332222100 0111111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+ ..+..||.++.+++++++.|.+.+.+
T Consensus 135 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 135 NW---YIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CE---EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cE---EEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 11 12345778889999999998877654
No 69
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=8.3e-17 Score=117.50 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..+|+|+|++|+|||||+|.|++...... ................ .....+.++||||..... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN--INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-----------ccc
Confidence 47999999999999999999998764211 1112222221111111 122468999999963211 111
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+++++..+.... .++..+....... .|+++++||+|+... +++.. .....+.+..
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV--REVME-------RDAKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG--CCSCH-------HHHHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc--cccCH-------HHHHHHHHHc
Confidence 1223567999999999855554443 4555555442222 378899999998754 32211 0122233332
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
...+ +..|+.++.+++++++.|.+.+.
T Consensus 142 ~~~~------~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 142 HAIF------VETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp TCEE------EECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCEE------EEEeCCCCcCHHHHHHHHHHHHh
Confidence 2222 23567778999999998877653
No 70
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.8e-16 Score=119.61 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=98.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||+|.|++..... ....+.+.+....... .++ ..+.++||||.. .+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHH
Confidence 4789999999999999999998776421 1112222232222222 233 358999999932 12233
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... +.+... ...++.+.
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~v~~~-------~~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER--REVSQQ-------RAEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CSSCHH-------HHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHHHH
Confidence 4455678899999999985444433 34555555543322 379999999998643 222110 01122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... ..+..||.++.+++++++.|.+.+.+
T Consensus 161 ~~~------~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 161 QDM------YYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HTC------CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 221 12345777889999999988777665
No 71
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=117.68 Aligned_cols=167 Identities=14% Similarity=0.039 Sum_probs=97.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
....+..+|+|+|.+|+|||||+|.|++...+... ...|........ ..++..+.++||||.....
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~---------- 81 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKF-KSSSLSFTVFDMSGQGRYR---------- 81 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEE-ECSSCEEEEEEECCSTTTG----------
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEE-EECCEEEEEEECCCCHHHH----------
Confidence 44456689999999999999999999987621121 223333332222 2456789999999954321
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.........+|++++|+|+++..+.... .++..+...... ....|+++|+||+|+... ....+..+
T Consensus 82 -~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~--------- 149 (190)
T 2h57_A 82 -NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQ--------- 149 (190)
T ss_dssp -GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHH---------
T ss_pred -HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHH---------
Confidence 1122344677999999999854333332 333333332211 012489999999999754 33322211
Q ss_pred HHH--hcC-CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQ--LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
... ... ..+ ..+..||.++.+++++++.|.+.+.+
T Consensus 150 ~~~~~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 150 LLCLENIKDKPW----HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp HHTGGGCCSSCE----EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HhChhhccCCce----EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 111 111 111 12345778889999999999877654
No 72
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=1.2e-16 Score=124.97 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=99.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|.+|||||||+|+|+|.... .+.. .+.|........ ...+..+.++||||.......... +.+...+-
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~-pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANW-PGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSID--EKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEEC-TTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSHH--HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCC-CCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCHH--HHHHHHHH
Confidence 468999999999999999999997753 2211 133433332222 245678999999998876543211 12222111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
....+|++++|+|+++ +.. . +.+...+.... .|+++++||+|.... ..+. .....+.+..+-
T Consensus 80 -~~~~~d~ii~V~D~t~-~~~-~---~~~~~~l~~~~--~pvilv~NK~Dl~~~--~~i~--------~~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 -LKGDADLVILVADSVN-PEQ-S---LYLLLEILEME--KKVILAMTAIDEAKK--TGMK--------IDRYELQKHLGI 141 (258)
T ss_dssp -HHSCCSEEEEEEETTS-CHH-H---HHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC--------BCHHHHHHHHCS
T ss_pred -hhcCCCEEEEEeCCCc-hhh-H---HHHHHHHHhcC--CCEEEEEECcCCCCc--cchH--------HHHHHHHHHcCC
Confidence 1147899999999983 322 1 22222322222 389999999998643 2221 113333333332
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..+..||.++.++++|++.+.+.+..
T Consensus 142 ------~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 142 ------PVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp ------CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred ------CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 23456777889999999999888764
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=7.8e-17 Score=120.37 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=98.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
....+|+|+|+.|+|||||+|.|++........ ...+.+....... ......+.++||||. ..+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~ 87 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQ-----------ERYRT 87 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHH-----------HHCHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCCh-----------HHHHH
Confidence 345799999999999999999999865411111 1111111111111 123456999999991 22233
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++|+++++.-+... ..++..+....... .|+++|+||+|+... +.+... ....+.+
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~ 156 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE--RVVPTE-------KGQLLAE 156 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCHH-------HHHHHHH
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHHH
Confidence 33344567899999999985444433 33555555543223 389999999998643 221110 1122223
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..... .+..|+.++.+++++++.|.+.+.+.
T Consensus 157 ~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 157 QLGFD------FFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHTCE------EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HcCCe------EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 22222 23457778899999999998877664
No 74
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=1.4e-16 Score=118.69 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=93.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+.....+|+|+|.+|+|||||+|.|++...... .....+.+....... .++ ..+.++||||.. +
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~-----------~ 81 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVD-IDGERIKIQLWDTAGQE-----------R 81 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEE-ETTEEEEEEEEECCCSH-----------H
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEE-ECCEEEEEEEEECCCch-----------h
Confidence 344557999999999999999999997764221 112222222222222 233 468999999932 1
Q ss_pred HH-HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 93 IV-KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 93 ~~-~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+. .........+|++++|+|+++..+... ..++..+....... ..|+++|+||+|+... +++.. ....
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~v~~-------~~~~ 151 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCDLRSA--IQVPT-------DLAQ 151 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS-CCCEEEEEECTTCGGG--CCSCH-------HHHH
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--ceeCH-------HHHH
Confidence 21 222233457899999999985444433 34555555543211 2389999999998654 32211 0122
Q ss_pred HHHHhcCCeEEEeeCCCcccccch---HHHHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~~~ 210 (228)
++....... .+..|+.++ .++.++++.|.+.+.+
T Consensus 152 ~~~~~~~~~------~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 152 KFADTHSMP------LFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHTTCC------EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred HHHHHcCCE------EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 233322222 223466667 8899999988766543
No 75
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.7e-16 Score=116.28 Aligned_cols=168 Identities=16% Similarity=0.041 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+...+|+|+|+.|+|||||++.|++.... .....|+..........++ ..+.++||||......
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCC----CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH----------
Confidence 34579999999999999999999987542 1122222222111111233 4688999999654321
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cc
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PK 167 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~ 167 (228)
........+|++++|+|++++-+.... .++..+...... .|+++|+||+|+... ......+.... ..
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN---VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 122345678999999999855444443 355666554332 389999999999765 43333322211 11
Q ss_pred hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
...++.+.... ...+..||.++.+++++++.|.+.+.
T Consensus 156 ~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 156 QGQKLAKEIGA-----CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHHTC-----SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-----cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 12223222221 01234577788999999998877654
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=8.6e-16 Score=113.68 Aligned_cols=167 Identities=22% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~ 90 (228)
+.+..+..+|+|+|++|+|||||+|.|++.... .....|+...........+. .+.++||||.......
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV----DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-----
Confidence 344556789999999999999999999976542 12223333222222223443 3667999995432211
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchH
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~ 169 (228)
...++ ..+|++++|++++++-+... ..++..+....... ..|+++|+||+|+... +.+.. ...
T Consensus 83 --~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~--~~v~~-------~~~ 146 (183)
T 3kkq_A 83 --REQYM----RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHL--RKVTR-------DQG 146 (183)
T ss_dssp --HHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCSTT--CCSCH-------HHH
T ss_pred --HHHHH----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchhc--cCcCH-------HHH
Confidence 11222 24599999999985444433 33445554433222 2389999999998653 22211 012
Q ss_pred HHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHHh
Q 027090 170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~ 210 (228)
.++.+..... .+..|+. ++.+++++++.|.+.+.+
T Consensus 147 ~~~~~~~~~~------~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 147 KEMATKYNIP------YIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHTCC------EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCe------EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 2233333322 2334666 678999999999887765
No 77
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=1.8e-16 Score=119.72 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=99.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||+|.|++..... ......+.+....... ..+ ..+.++||||.......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~---------- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRTI---------- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHHH----------
Confidence 34799999999999999999999876521 1112222222222222 233 36899999995543221
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++|++++...+.... .++..+....... .|+++|+||+|+... +.+.. ....++..
T Consensus 74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 141 (206)
T 2bcg_Y 74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDK--RVVEY-------DVAKEFAD 141 (206)
T ss_dssp -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCH-------HHHHHHHH
T ss_pred -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCH-------HHHHHHHH
Confidence 22344678999999999855444443 3455554443222 389999999998754 22210 01222322
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..... .+..||.++.+++++++.|.+.+.+.
T Consensus 142 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 142 ANKMP------FLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HTTCC------EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 22211 23456778899999999998877654
No 78
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=7.1e-16 Score=112.16 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+++|++|+|||||+|+|++.... .....|............ ...+.++||||...... ....+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC----CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC----CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence 368999999999999999999986541 112223322222111122 34588999999654321 11222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+ ...|++++++++++..+... ..++..+...... ...|+++++||+|+... +.+.. ....++.+.
T Consensus 72 ~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 137 (167)
T 1c1y_A 72 M----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE--RVVGK-------EQGQNLARQ 137 (167)
T ss_dssp H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc--ccCCH-------HHHHHHHHH
Confidence 2 24599999999985444333 2345555444322 12489999999998654 32210 012222322
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.... ..+..||.++.+++++++.|.+.+
T Consensus 138 ~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNC-----AFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSC-----EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCC-----cEEEecCCCCCCHHHHHHHHHHHH
Confidence 2111 123457778899999999887765
No 79
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=2.6e-15 Score=113.07 Aligned_cols=165 Identities=19% Similarity=0.157 Sum_probs=96.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+..+..+|+|+|++|+|||||+|.|++.... .....|+...........+ ..+.++||||..... ..
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~ 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AI 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCC----TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HH
Confidence 3445689999999999999999999987641 1222232222222222333 368899999965421 11
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
...++ ..+|++++++++++.-+.... .++..+...... ...|+++|+||+|+... ..+.. ....+
T Consensus 79 ~~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~ 144 (206)
T 2bov_A 79 RDNYF----RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK--RQVSV-------EEAKN 144 (206)
T ss_dssp HHHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred HHHHH----hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc--ccccH-------HHHHH
Confidence 22222 345999999999854444333 345555544321 12389999999998754 22110 01222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.+.....+ +..|+.++.+++++++.|.+.+.+
T Consensus 145 ~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 145 RAEQWNVNY------VETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCeE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222222222 334666778999999988777654
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=120.02 Aligned_cols=164 Identities=19% Similarity=0.137 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|+|++...... ...|............ ...+.++||||..... ....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT----TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc----ccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHH
Confidence 3458999999999999999999998654211 1122222111111122 2358999999954321 1122
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++ ..+|+++++++++...+.... .++..+..........|+++|+||+|+... ...... ...+.
T Consensus 75 ~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 75 LSI----SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp HHH----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred Hhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 222 345999999999854343332 344445444332222489999999998753 211111 11222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...... .+..||.++.+++++++.|.+.+.++
T Consensus 141 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 141 QEWKCA------FMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp HHHTCE------EEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred HHhCCe------EEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 222211 23357778899999999998877654
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.9e-16 Score=113.51 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||+|.|++....... ..|............ ...+.++||||..... .....+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY----IPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC----CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHh
Confidence 479999999999999999999987642111 112211111111122 2358999999965431 122222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
+ ..+|+++++++++++.+... ..++..+..........|+++++||+|+... +.+... ....+...
T Consensus 72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~ 138 (172)
T 2erx_A 72 I----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART 138 (172)
T ss_dssp H----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred c----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence 2 24599999999985444333 2344445444322122489999999998654 332110 01122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... .+..|+.++.+++++++.|.+.+..
T Consensus 139 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 139 WKCA------FMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp HTCE------EEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred hCCe------EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 2211 2345777889999999998876654
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=9.9e-17 Score=121.09 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.....+|+|+|++|+|||||+|.|++.... .......+.+......... ....+.++||||.....
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------
Confidence 345579999999999999999999987642 1112222233222222211 12468999999943221
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.........+|++++|+|++.+.+.... .++..+...... ....|+++|+||+|+... ...... ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 1122344678999999999854444333 344444444321 112389999999998743 221111 112
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+....... ..+..||.++.+++++++.|.+.+.+
T Consensus 142 ~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 142 WCYSKNNI-----PYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHTTSC-----CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCc-----eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22211111 12345777889999999988777665
No 83
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=1.6e-16 Score=116.03 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-HHh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-CLG 98 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~~~ 98 (228)
.+|+|+|++|+|||||+|+|++....... . .+.|.+..... ...++..+.++||||.......... +.+.. ++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~-~-~~~t~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~--~~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGN-W-PGVTVEKKEGE-FEYNGEKFKVVDLPGVYSLTANSID--EIIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEE-EEETTEEEEEEECCCCSCSSSSSHH--HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccC-C-CCcceeeeEEE-EEECCcEEEEEECCCcccCCCcchh--HHHHHHHHh
Confidence 68999999999999999999987542211 1 11222222222 2235677999999998765322111 12211 211
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
. ..++++++++|+.. . .....++..+.. .. .|+++|+||+|+... ..+.. ...++.+....
T Consensus 79 ~--~~~~~~i~v~D~~~-~-~~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~~~--------~~~~~~~~~~~ 139 (165)
T 2wji_A 79 N--EKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGIEI--------DVDKLEKILGV 139 (165)
T ss_dssp H--HCCSEEEEEEETTC-H-HHHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTCCC--------CHHHHHHHHTS
T ss_pred c--CCCCEEEEEecCCc-h-hHhHHHHHHHHh---cC--CCEEEEEEchHhccc--cChhh--------HHHHHHHHhCC
Confidence 1 25799999999873 1 112223333322 12 389999999997543 22110 12233333221
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
..+..||.++.+++++++.+.+.+
T Consensus 140 ------~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 ------KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ------CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ------CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 223468888999999999887765
No 84
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.69 E-value=4.1e-16 Score=116.52 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
....+|+|+|++|+|||||+|.|++...... ................ .....+.++||||....... ...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 93 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-------TSA 93 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-------HHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHH
Confidence 3347899999999999999999998765211 1122222222111111 12346899999997653211 111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
....+|++++|++++...+... ..++..+....... .|+++++||+|+... +.+.. .....+..
T Consensus 94 ----~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 158 (193)
T 2oil_A 94 ----YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT--IVVMLVGNKSDLSQA--REVPT-------EEARMFAE 158 (193)
T ss_dssp ----HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred ----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECCCcccc--cccCH-------HHHHHHHH
Confidence 2346799999999985444333 23444444432222 389999999998753 22110 01222333
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.....+ +..||.++.+++++++.|.+.+.+
T Consensus 159 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 159 NNGLLF------LETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp HTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222222 234667789999999988777655
No 85
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.68 E-value=9.3e-16 Score=114.21 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
++..+|+|+|++|+|||||+|.+++....... .|........ ..+...+.++||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETL-QYKNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEE-EETTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEE-EECCEEEEEEECCCCHhHHHH-----------
Confidence 45689999999999999999999876643221 1222222222 245678999999996543221
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+... .......+... ...
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~ 152 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQLG-------VSS 152 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHHhC-------hhh
Confidence 123446789999999998665555433 3333322111 112489999999998764 33332222100 011
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+...-+ ..+..||.++.+++++++.|.+.+.++
T Consensus 153 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 153 IMNRTW---TIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCce---EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 111111 123457788899999999999888764
No 86
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2e-16 Score=119.77 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|.+|+|||||+|.|++..... ....|+..........++ ..+.++||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE----VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------R 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCT-----------T
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC----cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-----------H
Confidence 34799999999999999999999876521 112222222111112233 358899999965432 1
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC-----ch
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KP 168 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~-----~~ 168 (228)
........+|++++|+++++.-+.... .++..+...... .|+++|+||+|+... ......+..... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 122345678999999999854444333 455555554322 389999999999765 444433332211 11
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...+....... ..+..||.++.+++++++.|.+.+..
T Consensus 164 ~~~~~~~~~~~-----~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 164 GRAMAVRIQAY-----DYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCC-----EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 22222222211 11345777889999999999887765
No 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=1.2e-16 Score=116.36 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||+|.|++...... ...+.+.+....... .. ...+.++||||.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~---------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAI---------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTCC----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHH----------
Confidence 347999999999999999999998754211 111222222222222 22 236899999994432211
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~ 173 (228)
.......+|++++++++++..+... ..++..+...... .|+++|+||+|+... +.+ ... ..++.
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~--~~~~~~~--------~~~~~ 136 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDD--SCIKNEE--------AEGLA 136 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGG--CSSCHHH--------HHHHH
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccCcc--cccCHHH--------HHHHH
Confidence 1122346799999999985443333 2345555444322 389999999998753 221 111 22233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.....+ +..|+.++.+++++++.|.+.+.+
T Consensus 137 ~~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 137 KRLKLRF------YRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHTCEE------EECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHcCCeE------EEEecCCCCCHHHHHHHHHHHHhh
Confidence 3222222 345677788999999998876643
No 88
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=117.44 Aligned_cols=170 Identities=16% Similarity=0.096 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.....+|+|+|++|+|||||+|.|++....... ......+....... .++ ..+.++||||.... ....
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-------~~~~ 94 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLI-VDGERTVLQLWDTAGQERF-------RSIA 94 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEE-ETTEEEEEEEEECTTCTTC-------HHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccC--CCCccceeEEEEEE-ECCEEEEEEEEECCCCcch-------hhhH
Confidence 344589999999999999999999987642111 11111111111111 222 45899999995432 1122
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
..++ ..+|++++|+++++..+.... .++..+....... .|+++|+||+|+... ..... .+.........+
T Consensus 95 ~~~~----~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~ 165 (199)
T 2p5s_A 95 KSYF----RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKL 165 (199)
T ss_dssp HHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHH
T ss_pred HHHH----hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHH
Confidence 2222 345999999999855444433 3555555443222 389999999998632 11100 000001112223
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.......+ +..||.++.+++++++.|.+.+.+
T Consensus 166 ~~~~~~~~------~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 166 AMTYGALF------CETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHTCEE------EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred HHHcCCeE------EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 33222221 235777889999999998877654
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=3.5e-16 Score=116.13 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||++.|++.... .....|............ ...+.++||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence 44579999999999999999999987542 111222222211111122 345899999994322 1
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc-C---Cch
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-C---PKP 168 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~-~---~~~ 168 (228)
.........+|++++|+|++++.+.... .++..+...... .|+++++||+|+.... ..+.++.... + ...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 1223345688999999999865555543 355555554322 3899999999987531 1122211110 0 112
Q ss_pred HHHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHH
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~ 209 (228)
..++.+..... ..+..||. ++.+++++++.+.+.+-
T Consensus 146 ~~~~~~~~~~~-----~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 146 GANMAKQIGAA-----TYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHHTCS-----EEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc-----EEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 23333332211 12345776 57899999998877654
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=2.9e-15 Score=112.36 Aligned_cols=181 Identities=11% Similarity=0.026 Sum_probs=93.6
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+.+..+..+|+|+|.+|||||||++.+++........ ....+...............+.++||||........-.
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--- 88 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD--- 88 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC---
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh---
Confidence 34556667899999999999999999999864322111 01111111111111123457999999996553221100
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
...+ ...+|++++|+|+++++......+..++..........|+++|.||+|+... .......+........+
T Consensus 89 -~~~~----~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~ 161 (196)
T 3llu_A 89 -YEMI----FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDD 161 (196)
T ss_dssp -HHHH----HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHH
T ss_pred -cccc----cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHH
Confidence 0112 2356999999999865223333444444443111122389999999998764 22211111100111222
Q ss_pred HHHhcC-CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
+.+... ...+ ..+..||.+ .+++++++.+.+.
T Consensus 162 ~~~~~~~~~~~---~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHL---SFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCE---EEEEECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCc---ceEEEEech-hhHHHHHHHHHHH
Confidence 332110 1111 123457788 9999999887654
No 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=1.2e-15 Score=115.78 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||++.|++...... ...+. .......... ...+.++||||... +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT----QTSIT-DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCB----CCCCS-CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccc----cCCcc-eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 3457999999999999999999998764221 12111 1222222111 46799999999431 12
Q ss_pred H-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccccEEEEEeCCCCCcc
Q 027090 95 K-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 95 ~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~----~~~~~~~~llv~~~~D~~~~ 152 (228)
. ........+|++++|+|+++ +........+.+...+ ......|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2 22333567899999999973 2221222222222221 11112389999999998765
No 92
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.68 E-value=7.2e-16 Score=114.58 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+..+..+|+|+|++|||||||++.+++..... ....|.. ........++ ..+.++||||.... +
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~ 81 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPEL--------Q 81 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCH--------H
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcc-eEEEEEEECCEEEEEEEEECCCChhh--------h
Confidence 445566899999999999999999998776421 1122222 1112222344 34778999995431 1
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
++. ..|++++|+|+++.-|... ..++..+..... ....|++++.||+|+.......+. .....
T Consensus 82 ----~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~ 145 (184)
T 3ihw_A 82 ----FAA----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRAR 145 (184)
T ss_dssp ----HHH----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHH
T ss_pred ----eec----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHH
Confidence 222 3599999999986655555 345555554321 122489999999998422001111 01122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
++.+...... .+..||.++.+++++++.+.+.+.+.
T Consensus 146 ~~~~~~~~~~-----~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 146 KLSTDLKRCT-----YYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHTTTCE-----EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCe-----EEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 3333332111 13357778899999999988876653
No 93
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=6.4e-17 Score=118.04 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|++|+|||||+|+|++...... .....+.+....... .. ...+.++||||..... .. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~-------~~----~ 69 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVT-INEHTVKFEIWDTAGQERFA-------SL----A 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-------GG----H
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCChhhh-------hh----h
Confidence 6899999999999999999998764211 111222222222212 22 2368999999943211 11 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+++++..+.... .++..+....... .|+++++||+|+... ....... .....++.+..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~v~----~~~~~~~~~~~ 141 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE--GGERKVA----REEGEKLAEEK 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS--SCCCCSC----HHHHHHHHHHH
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--ccccCCC----HHHHHHHHHHc
Confidence 2233567999999999855444443 3454554443223 379999999998643 1100000 01122222222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
... .+..||.++.+++++++.|.+.+
T Consensus 142 ~~~------~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 142 GLL------FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp TCE------EEECCTTTCTTHHHHHHHHHTTS
T ss_pred CCE------EEEEeCCCCCCHHHHHHHHHHHH
Confidence 222 23456777899999999887654
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.68 E-value=2.9e-15 Score=110.94 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.+..+|+|+|++|+|||||+|.|++.... .....|+...........+ ..+.++||||..... ....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC----CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHH
Confidence 34589999999999999999999987642 1222232222222122333 368899999955421 1222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.++ ...|++++|+++++..+... ..++..+....... ..|+++|+||+|+... +.+.. ....++.
T Consensus 85 ~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~ 150 (187)
T 2a9k_A 85 NYF----RSGEGFLCVFSITEMESFAATADFREQILRVKEDE-NVPFLLVGNKSDLEDK--RQVSV-------EEAKNRA 150 (187)
T ss_dssp HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT-TCCEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred HHh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--CccCH-------HHHHHHH
Confidence 222 34599999999985444333 33555555544311 2389999999998653 22110 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.....+ +..++.++.+++++++.|.+.+.+
T Consensus 151 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 151 EQWNVNY------VETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHTTCEE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeE------EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 3322222 235677789999999999887765
No 95
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.68 E-value=1.5e-16 Score=121.30 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+..+|+|+|.+|+|||||++.++..... .....|.... ...... .....+.++||+|.....
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~----~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----------- 76 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----------- 76 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCC----CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh-----------
Confidence 4479999999999999999999876541 1222333222 111111 122357899999944321
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
......++.+++++++++.+++-|.... .|+..+........ |++||.||+|+... +.+.. ....++.
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~--r~V~~-------~e~~~~a 145 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADK--RQVSI-------EEGERKA 145 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhc--CcccH-------HHHhhHH
Confidence 1222344677999999999966666554 46666666554443 89999999998754 33221 0122233
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+..+-.+ +..||.++.+++++++.|.+.+..
T Consensus 146 ~~~~~~~------~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 146 KELNVMF------IETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHTCEE------EEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HHhCCee------EEEeCCCCcCHHHHHHHHHHHHHh
Confidence 3322221 245888899999999988776653
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.68 E-value=3.7e-16 Score=116.92 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..+..+|+|+|++|+|||||++.+++...... ..|........ ......+.++||||...... .+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-------~~~~ 92 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNICFTVWDVGGQDKIRP-------LWRH 92 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----CT-------THHH
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEE-EECCEEEEEEECCCCHhHHH-------HHHH
Confidence 34568999999999999999999987664221 12222222222 24567899999999654321 1111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
....+|++++|+|++++-+.... .++..+..... ....|+++|+||+|+... .......+... ..
T Consensus 93 ----~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~-------~~ 158 (192)
T 2b6h_A 93 ----YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDKLG-------LQ 158 (192)
T ss_dssp ----HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GG
T ss_pred ----HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHHhC-------cc
Confidence 22467999999999865554443 23333322111 112489999999998754 33332222100 01
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+....+ ..+..||.++.+++++++.|.+.+.+
T Consensus 159 ~~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 159 HLRSRTW---YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp GCSSCCE---EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred cccCCce---EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 1111111 12346788889999999998876643
No 97
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.68 E-value=4e-16 Score=118.00 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=98.9
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHH
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
........+|+|+|++|+|||||+|.|++.... .....|...........+ ...+.++||||....
T Consensus 22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------- 89 (205)
T 1gwn_A 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------- 89 (205)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG--------
T ss_pred CcccceeeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh--------
Confidence 334455689999999999999999999987652 111222222221111122 346899999994322
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc----
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---- 164 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~---- 164 (228)
..........+|++++|+|+++..+.... .++..+...... .|+++|+||+|+.... ..+.++....
T Consensus 90 ---~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 90 ---DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDV-STLVELSNHRQTPV 162 (205)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCH-HHHHHHHTTTCCCC
T ss_pred ---hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEechhhccch-hhhhhhcccccCCC
Confidence 11223345688999999999865555543 455656554332 3899999999987531 1222211110
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHH
Q 027090 165 CPKPLKEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~ 209 (228)
......++.+..... ..+..||. ++.+++++++.+.+.+-
T Consensus 163 ~~~~~~~~~~~~~~~-----~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 163 SYDQGANMAKQIGAA-----TYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-----EEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 011223333332211 11345676 57899999998877654
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=3e-16 Score=116.21 Aligned_cols=162 Identities=15% Similarity=0.063 Sum_probs=94.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.+..+..+|+|+|.+|+|||||+|.|++.......... . ....... .++..+.++||||.....
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~-~----~~~~~~~-~~~~~~~i~Dt~G~~~~~---------- 79 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-G----SNVEEIV-INNTRFLMWDIGGQESLR---------- 79 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCS-S----SSCEEEE-ETTEEEEEEEESSSGGGT----------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcC-c----eeeEEEE-ECCEEEEEEECCCCHhHH----------
Confidence 44455689999999999999999999987652111111 1 1111222 356789999999964321
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.........+|++++|+|+++..+..... ++..+..... ....|+++|+||+|+... .......+...
T Consensus 80 -~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~------- 148 (181)
T 2h17_A 80 -SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQFLK------- 148 (181)
T ss_dssp -CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------
T ss_pred -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHHhC-------
Confidence 12233456789999999998666665443 3333332210 122489999999998754 22222211100
Q ss_pred HHhcC-CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
..... ..+ ..+..||.++.+++++++.|.+
T Consensus 149 ~~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 149 LTSIKDHQW----HIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GGGCCSSCE----EEEECBTTTTBTHHHHHHHHHT
T ss_pred cccccCCce----EEEEccCCCCcCHHHHHHHHHh
Confidence 01111 111 1234577888999999988764
No 99
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.68 E-value=1.6e-15 Score=113.89 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC----------------------------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---------------------------- 68 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (228)
.+..+|+|+|+.|+|||||+|+|++...... ............... ..+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEE-TTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence 3458999999999999999999998764211 111111111111111 111
Q ss_pred -----------cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccc
Q 027090 69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNV 136 (228)
Q Consensus 69 -----------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~ 136 (228)
..+.++||||...... . .......+|++++|+|++...+.... .++..+.....
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~----~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-------I----VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-------T----HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-------H----HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 5689999999443221 1 11223467999999999855444443 34444444322
Q ss_pred cccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 137 ~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.|+++|+||+|..... ....+ ..++.+.....+ +..||.++.+++++++.|.+.+.+
T Consensus 148 -~piilv~NK~D~~~~~-~~~~~---------~~~~~~~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 -YIIILVANKIDKNKFQ-VDILE---------VQKYAQDNNLLF------IQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CEEEEEEECTTCC-CC-SCHHH---------HHHHHHHTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCCccccc-CCHHH---------HHHHHHHcCCcE------EEEecCCCCCHHHHHHHHHHHHHH
Confidence 3899999999932220 11111 222333322222 345677789999999999887765
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=6e-17 Score=119.74 Aligned_cols=169 Identities=17% Similarity=0.101 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
.....+|+|+|++|+|||||++.+++.... .....|+........... ...+.++||||.....
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------- 70 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP----TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN---------- 70 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------
Confidence 345589999999999999999999976541 111222221111111112 2346799999954322
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc---CCch
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---CPKP 168 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~---~~~~ 168 (228)
.........+|++++|+|+++..+.... .++..+...... .|+++++||+|+... .......... ....
T Consensus 71 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~ 144 (182)
T 3bwd_D 71 -RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQ 144 (182)
T ss_dssp -TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHH
T ss_pred -hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhhcC--cccccccccCCCCCHHH
Confidence 1222345678999999999855554443 355555554332 389999999998755 3321100000 0111
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
..++.+..... ..+..||.++.+++++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 145 GEELKKLIGAP-----AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC-----EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 22333332211 1134577788999999998877653
No 101
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=2.4e-16 Score=116.73 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||++.|++...... ...+.+.+....... .++ ..+.++||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEcCCCChh-----------hhh
Confidence 347999999999999999999997654111 001112222222222 233 4689999999432 222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++|+|++++.+.... .++..+....... .|+++|+||+|+... +.+.. ....++.+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDK--RQVSK-------ERGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSC--CCSCH-------HHHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCcc--CcCCH-------HHHHHHHH
Confidence 233455788999999999854444433 3555554432222 389999999998753 22110 01222222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..... .+..||.++.+++++++.|.+.+.+
T Consensus 142 ~~~~~------~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 142 DYGIK------FMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp HHTCE------EEECCC---CCHHHHHHHHHHHHHH
T ss_pred HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22222 2345777889999999988777765
No 102
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=5.8e-17 Score=136.77 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=96.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+|+|++|||||||+|.|+|.... .+.....++...........+..+.++||||+..... ...+++.....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC---------CCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch---HHHHHHHHHHH
Confidence 368999999999999999999987542 1222222222222322334567899999999874322 12244444444
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
...+.+|++++++|...+++..+....+++.. ..+|+++++||+|.... ... ... ....-
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~--~~~---~~e--------~~~lg-- 157 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--RAN---IYD--------FYSLG-- 157 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC--------------CC--------SGGGS--
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhh--hhh---HHH--------HHHcC--
Confidence 45567799999999987888888776666543 12489999999998643 211 111 00000
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+...+..||.++.++.+|++.+.+.+++.
T Consensus 158 ----~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 158 ----FGEPYPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp ----SSSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred ----CCceEEeecccccchHHHHHHHHhhcccc
Confidence 01123467888899999999998877653
No 103
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.67 E-value=3.5e-15 Score=122.07 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=105.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
....+++++|.+|+|||||+|.|++........ ...|....... ....+..+.++||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQ-FEDGYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEE-EEETTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEE-EEecCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 355799999999999999999999986421111 11222222222 2234667999999998764322111001 112
Q ss_pred HhhccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~--s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
+......+|++++|+|+++.. +... ..++..+...+.. +|+++|+||+|.... ..+....+ ..
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~---~piilV~NK~Dl~~~--~~~~~~~~---------~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD---LPFLVVINKIDVADE--ENIKRLEK---------FV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT---SCEEEEECCTTTCCH--HHHHHHHH---------HH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC---CCEEEEEECcccCCh--HHHHHHHH---------HH
Confidence 222334679999999987433 5554 4566666655432 389999999999765 44432222 22
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.... ...+..||.++.++++|++.|.+.+...
T Consensus 306 ~~~~------~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 306 KEKG------LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHTT------CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HhcC------CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 2111 1234567888899999999998888663
No 104
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=116.92 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|.|++...... .....+.+....... ..+ ..+.++||||.. .+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHH
Confidence 3457999999999999999999998764211 111222222222222 233 468999999921 111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+|++++|+++++..+.... .++..+....... .|+++|+||+|+... +.+.. ....++.
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~ 157 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPE--REVTF-------LEASRFA 157 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--cccCH-------HHHHHHH
Confidence 1122334578999999999854444332 3444454433322 389999999998643 22210 0112222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...-.+ +..||.++.+++++++.|.+.+.+
T Consensus 158 ~~~~~~~------~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 158 QENELMF------LETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HHTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2222122 235677789999999988777654
No 105
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=6.8e-17 Score=135.62 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|++|+|||||+|.|+|... ..+.....++.........+.+..+.++||||+...... +.+.+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEECTTCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 4899999999999999999998754 112222223322233333355677999999998632211 22334444444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
..+.+|++++++|+..+++..+..+.+++.. ..+|+++++||+|.... .. .... + ... .
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~~---~~~~-----~---~~l-g-- 137 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--RA---NIYD-----F---YSL-G-- 137 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS-----S---GGG-S--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--hh---hHHH-----H---HHc-C--
Confidence 4567799999999988888877665444432 12489999999998643 21 0111 1 010 0
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+...+..||.++.++.+|++.+.+.+++.
T Consensus 138 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 138 ---FGEPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp ---SCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred ---CCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 11335678889999999999999888753
No 106
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.5e-15 Score=113.82 Aligned_cols=171 Identities=17% Similarity=0.131 Sum_probs=95.8
Q ss_pred CCCccCC-CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCC
Q 027090 8 GDWKPTS-PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSA 84 (228)
Q Consensus 8 ~~~~~~~-~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~ 84 (228)
.+|...+ +..+..+|+|+|.+|+|||||++.|++..... ....|............+ ..+.++||||...
T Consensus 16 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 88 (196)
T 2atv_A 16 ENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIW----EYDPTLESTYRHQATIDDEVVSMEILDTAGQED--- 88 (196)
T ss_dssp -----------CCEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---
T ss_pred cccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---
Confidence 3444332 33556899999999999999999999876421 112222222221112233 4589999999765
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
. .....++. .+|++++|+|+++.-+.... .++..+...... ...|+++|+||+|+... +.+..
T Consensus 89 -~----~~~~~~~~----~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~--~~v~~---- 152 (196)
T 2atv_A 89 -T----IQREGHMR----WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS--RQVST---- 152 (196)
T ss_dssp -C----HHHHHHHH----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG--CCSCH----
T ss_pred -c----cchhhhhc----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc--cccCH----
Confidence 1 12222332 45999999999854444333 345555544321 12389999999998653 22210
Q ss_pred cCCchHHHHHHhcCCeEEEeeCCCcccccchH-HHHHHHHHHHHHHHh
Q 027090 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (228)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~ 210 (228)
....++.+..... .+..|+.++. +++++++.|.+.+.+
T Consensus 153 ---~~~~~~~~~~~~~------~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 153 ---EEGEKLATELACA------FYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp ---HHHHHHHHHHTSE------EEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCe------EEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 0111222222211 2234667778 999999988777655
No 107
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.67 E-value=3.8e-16 Score=116.64 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=95.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|++|+|||||+|.|++...... .....+.+....... .++ ..+.++||||.......
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~--------- 86 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVN-IDGKQIKLQIWDTAGQESFRSI--------- 86 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEE-ETTEEEEEEEECCTTGGGTSCC---------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEECCCchhhhhh---------
Confidence 3457899999999999999999998764211 111222222222222 233 46899999995432211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+|++++|+|+++..+... ..++..+....... .|+++++||+|+... +.+.. ....++.
T Consensus 87 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~ 153 (191)
T 2a5j_A 87 --TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESR--RDVKR-------EEGEAFA 153 (191)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCc--cccCH-------HHHHHHH
Confidence 1122346799999999985444443 23555554433222 389999999998653 22210 0112222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+.....+ +..||.++.+++++++.|.+.+.+
T Consensus 154 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 154 REHGLIF------METSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp HHHTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2222222 234667789999999988776655
No 108
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=2.1e-16 Score=116.98 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|++|+|||||+|.+++........ |........ ..++..+.++||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETL-SYKNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEE-EETTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence 456899999999999999999999765422211 111111222 23567899999999654321 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|+++.-+..... ++..+..... ....|+++++||+|+... ....+..+.... ..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~-------~~ 148 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKELNL-------VE 148 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHHTTT-------TT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHHHhCc-------cc
Confidence 223456789999999998666655433 3333322110 122489999999998654 322222111000 00
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+....+ ..+..|+.++.+++++++.|.+.+.+
T Consensus 149 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 149 LKDRSW---SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CCSSCE---EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCce---EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 111100 12345778889999999999888765
No 109
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.67 E-value=6.4e-16 Score=112.79 Aligned_cols=162 Identities=20% Similarity=0.108 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+|+|+|++|+|||||+|.|++....... ....+.+....... .++ ..+.++||||...... .+ .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~---~ 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WL---Q 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hh---h
Confidence 68999999999999999999876542111 11222222222222 233 3578999999654321 01 1
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|++++++-+.... .++..+...... ...|+++++||+|+... +.+.. ....++.+..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS--REVSL-------EEGRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc--ccCCH-------HHHHHHHHHc
Confidence 1112246999999999854444333 344444443221 12489999999998643 22211 0122233333
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...+ +..||.++.+++++++.+.+.+..
T Consensus 140 ~~~~------~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKH------IETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcE------EEecCccCCCHHHHHHHHHHHHHh
Confidence 2222 345777889999999999887765
No 110
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.67 E-value=3.7e-16 Score=123.07 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~ 97 (228)
..+|+|+|++|||||||+|+|+|.... .+.. .+.|......... . +..+.++||||.......... +.+. .++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~-pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~~--e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNW-PGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSPE--AKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSS-SCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSHH--HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCC-CCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCChH--HHHHHHHH
Confidence 368999999999999999999997632 1211 1233332222222 2 567999999998765432211 1222 222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
.. ..+|++++|+|+++ + .+.+.+...+.... .|+++++||+|.... ..+. .....+.+..+
T Consensus 77 ~~--~~~d~vi~V~D~t~-~----e~~~~~~~~l~~~~--~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg 137 (272)
T 3b1v_A 77 LS--QRADSILNVVDATN-L----ERNLYLTTQLIETG--IPVTIALNMIDVLDG--QGKK--------INVDKLSYHLG 137 (272)
T ss_dssp HT--TCCSEEEEEEEGGG-H----HHHHHHHHHHHHTC--SCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred hc--CCCCEEEEEecCCc-h----HhHHHHHHHHHhcC--CCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcC
Confidence 21 46899999999973 1 11122222222112 379999999997643 2211 11233333322
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
. ..+..||.++.+++++++.|.+.+...
T Consensus 138 ~------~vi~~SA~~g~gi~el~~~i~~~~~~~ 165 (272)
T 3b1v_A 138 V------PVVATSALKQTGVDQVVKKAAHTTTST 165 (272)
T ss_dssp S------CEEECBTTTTBSHHHHHHHHHHSCTTT
T ss_pred C------CEEEEEccCCCCHHHHHHHHHHHHhhc
Confidence 1 234467788899999999988876543
No 111
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.8e-16 Score=118.36 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
+..+|+|+|++|+|||||+|.|++..... ......+.+........ .....+.++||||....... ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~-- 82 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-------TP-- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-------HH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hH--
Confidence 44799999999999999999999876421 11112222222222221 12346899999995432211 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+|++++|++++...+.... .++..+...... ...|+++|+||+|+... ...... ..++.+.
T Consensus 83 --~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 149 (195)
T 1x3s_A 83 --SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKENR--EVDRNE--------GLKFARK 149 (195)
T ss_dssp --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHH
T ss_pred --HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCccc--ccCHHH--------HHHHHHH
Confidence 223467999999999854443332 334444332211 12489999999998543 211111 1222222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.... .+..++.++.+++++++.|.+.+.+.
T Consensus 150 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 150 HSML------FIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTCE------EEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred cCCE------EEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 2212 13456777899999999998888764
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.67 E-value=6.5e-16 Score=113.71 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC---cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEI 93 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~ 93 (228)
....+|+|+|++|+|||||+|.|++........ .+.+.+....... ..+ ..+.++||||....... .
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~ 73 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------L 73 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------H
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEE-eCCCCEEEEEEEECCCCccccch-------h
Confidence 345799999999999999999999876421110 1111122222222 222 56899999996543211 1
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcccccc-EEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (228)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~-~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (228)
.. ....+|++++|+|+++..+.... .++..+..........| +++|+||+|+... +.+.. ....+
T Consensus 74 ~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~-------~~~~~ 140 (178)
T 2hxs_A 74 DK----YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM--RTIKP-------EKHLR 140 (178)
T ss_dssp HH----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG--CSSCH-------HHHHH
T ss_pred hH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc--cccCH-------HHHHH
Confidence 11 23467999999999854444333 34555544322111124 7889999998653 22110 01222
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+.+...-.+ +..||.++.+++++++.|.+.+.+.
T Consensus 141 ~~~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 141 FCQENGFSS------HFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHTCEE------EEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcE------EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 222222122 3457778899999999998887664
No 113
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.66 E-value=1.1e-16 Score=133.10 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+.....+|+|+|+.|+|||||+|+|++....... .....|++.............+.++||||+.+.........+...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 3455689999999999999999999987642111 112333333333333223348999999999876543222112222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.+ ...+|++++|+|+ .....+..++..+... . .|+++|+||+|.... ... +..+. +.+
T Consensus 109 ~~----l~~aD~vllVvD~--~~~~~~~~~l~~l~~~---~--~piIvV~NK~Dl~~~--~~~-~~~~~--------l~~ 166 (423)
T 3qq5_A 109 RV----FYRADCGILVTDS--APTPYEDDVVNLFKEM---E--IPFVVVVNKIDVLGE--KAE-ELKGL--------YES 166 (423)
T ss_dssp HH----HTSCSEEEEECSS--SCCHHHHHHHHHHHHT---T--CCEEEECCCCTTTTC--CCT-HHHHH--------SSC
T ss_pred HH----HhcCCEEEEEEeC--CChHHHHHHHHHHHhc---C--CCEEEEEeCcCCCCc--cHH-HHHHH--------HHH
Confidence 22 3467999999998 4666677777777654 2 379999999998765 332 11111 111
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 215 (228)
..+ ...+..||.++.+++++++.|.+.+++....+
T Consensus 167 ~~g------~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~ 201 (423)
T 3qq5_A 167 RYE------AKVLLVSALQKKGFDDIGKTISEILPGDEEIP 201 (423)
T ss_dssp CTT------CCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCC
T ss_pred HcC------CCEEEEECCCCCCHHHHHHHHHHhhhhhccCc
Confidence 111 14566788899999999999999987654434
No 114
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.66 E-value=8.5e-16 Score=113.83 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
....+|+++|++|+|||||++.|++...... ..|........ ..++..+.++||||.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSV-QSQGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEE-EETTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEE-EECCEEEEEEECCCCHHH-----------HHH
Confidence 4568999999999999999999998753111 11111111222 245678999999994321 112
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|++++-+..... ++..+..... ....|+++++||+|.... ....+..+... ...
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~-------~~~ 146 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEGLN-------LHT 146 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHHhC-------chh
Confidence 223345779999999998655554432 3333322111 122489999999998765 33322222100 001
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+....+ ..+..||.++.+++++++.|.+.+.+
T Consensus 147 ~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 147 IRDRVW---QIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred ccCCce---EEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 111111 12345788889999999998776544
No 115
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=7.8e-17 Score=135.56 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
.+.+|+|+|++|+|||||+|+|++..... ......|+..........++..+.++||||+.+.....+ ..-....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~--v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve---~~gi~~~ 297 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI--VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE---KIGVERS 297 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC--CSCCTTCCHHHHHHEEEETTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc--ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH---HHHHHHH
Confidence 34689999999999999999999865311 122222322221111235677899999999865321111 1111222
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
......+|++++|+|++.+.+..+..+++.+. . +|+++|+||+|+... .... .++. + ..
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~~--~~~~-~~~~-----~------~~ 356 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK----H---RPLILVMNKIDLVEK--QLIT-SLEY-----P------EN 356 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----T---SCEEEEEECTTSSCG--GGST-TCCC-----C------TT
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----C---CcEEEEEECCCCCcc--hhhH-HHHH-----h------cc
Confidence 23457889999999999888887766555442 2 279999999998765 3322 1111 0 00
Q ss_pred CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
. ...+..|+.++.++++|++.|.+.+...
T Consensus 357 ~-----~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 357 I-----TQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp C-----CCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred C-----CcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 0 1224467778889999999998887764
No 116
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=7.6e-16 Score=129.38 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc-HHH----HHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFV----GKE 92 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~----~~~ 92 (228)
...+++|+|++|||||||+|+|+|..... ....+.|+..........++..+.++||||+....... +.. ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~--v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL--VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE--ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc--cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 45799999999999999999999986421 22223333322222233567788999999974322111 000 000
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
...++ ..+|++++++++..+.+..+......+.. .+ +|+++++||+|+..........+.+. +.+.
T Consensus 257 ~~~~i----~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 322 (439)
T 1mky_A 257 VVDSI----EKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREK 322 (439)
T ss_dssp HHHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred HHHHH----hhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence 11122 34599999999987788776554444432 11 37999999999875411113222222 1111
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
...... ...+..||.++.++++|++.+.+.+....
T Consensus 323 ~~~~~~-----~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 323 LYFIDY-----SPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp CGGGTT-----SCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred hccCCC-----CcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 111111 12234688889999999999988887643
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=1.7e-15 Score=112.59 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH----
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK---- 95 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~---- 95 (228)
.+|+|+|++|+|||||+|.|++..... .. ..+.|....... .. .+.++||||+...........+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-GK-RPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS-SS-STTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc-CC-CCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 489999999999999999999886421 11 112232222211 12 68899999976654433222222222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHH--HHHHH---------HHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVH---------RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~---------~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~ 164 (228)
++......+++++++++.. +... ..+.. +........ .|+++|+||+|.... . ....
T Consensus 75 ~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~--- 142 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI--- 142 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH---
T ss_pred HHHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH---
Confidence 2222134567788888765 2222 12221 222211112 389999999998765 3 1111
Q ss_pred CCchHHHHHHhcCCeEEE-eeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 165 CPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+++.+.....+.. ....+..||.++.+++++++.|.+.+.+..
T Consensus 143 -----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 143 -----NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp -----HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 1222222211000 001245677888999999999988887743
No 118
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=3.3e-16 Score=118.17 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC--CcccccCCCCCccee--eEeEeeeeeC----CcEEEEEeCCCCCCCCCCcHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~~iDtpG~~~~~~~~~~ 88 (228)
....+|+|+|++|+|||||+|.|++. .. ......|+. ....... .. ...+.++||||.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~--------- 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF----LKDYAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGS--------- 83 (208)
T ss_dssp EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTT---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc----cCCCCCccceEEEEEEEE-ECCcccEEEEEEEECCCc---------
Confidence 34579999999999999999999987 33 112222322 2222222 23 346899999993
Q ss_pred HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccccEEEEEeCCCCCc-cchhhHHHHhhccC
Q 027090 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHEC 165 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~-~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~ 165 (228)
.++..........+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+.. . +.+.
T Consensus 84 --~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~~v~------- 152 (208)
T 2yc2_C 84 --DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQR--HQVR------- 152 (208)
T ss_dssp --HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCC-------
T ss_pred --HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhh--ccCC-------
Confidence 2233444556678999999999985555444 3455555554320 01238999999999875 3 2211
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccc-hHHHHHHHHHHHHHHHh
Q 027090 166 PKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~ 210 (228)
.....++.+..... .+..|+.+ +.+++++++.|.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~------~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 153 LDMAQDWATTNTLD------FFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HHHHHHHHHHTTCE------EEECCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCE------EEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 01122333333311 23456777 88999999988877665
No 119
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.66 E-value=2.7e-15 Score=127.19 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=105.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcc----c-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAF----K-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~----~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+..+|+++|+.++|||||+++|++.... . ........|.+....... .++..+.++||||. .+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh-----------~~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGH-----------AD 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSH-----------HH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCCh-----------HH
Confidence 3479999999999999999999987610 0 001122344444333322 35678999999993 23
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
+...+......+|++++++|++++........+.++... +- |.++++||+|.... +.+....++ +.++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-CC----CEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 444444555678999999999877777777777665542 22 57899999999865 555444443 4444
Q ss_pred HHhc-CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.... ... ....++.||.++.++++|++.|.+.++.
T Consensus 154 l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 154 LQSTHNLK---NSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHSSSGG---GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred Hhhhcccc---cceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 4332 100 0122445777889999999999998764
No 120
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=2.2e-16 Score=119.77 Aligned_cols=171 Identities=18% Similarity=0.100 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||++.+++.... .....|+..........++ ..+.++||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP----TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC----ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH----------
Confidence 34589999999999999999999976542 1112222222111111222 4689999999754322
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKE 171 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~ 171 (228)
........+|++++|+|+++.-+.... .++..+...... .|+++|+||+|+... ..+...... .......+
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 122345678999999999855444443 355666554322 389999999998654 332110000 00111223
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+.+..... ..+..||.++.+++++++.|.+.+.+..
T Consensus 147 ~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 147 LRKQIGAA-----AYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHHHcCCc-----eEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 33332211 1234577788999999999988877643
No 121
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.65 E-value=4.6e-16 Score=114.48 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|+|||||+|.|++..... ......+.+....... ..+ ..+.++||||..... ..+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-------~~~~-- 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-------SLIP-- 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-------GGSH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-------HHHH--
Confidence 3789999999999999999999765421 1122233233222222 233 368999999943221 1111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.....+|++++|+++++..+... ..++..+....... .|+++|+||+|+... +.+... ........
T Consensus 82 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 148 (179)
T 2y8e_A 82 --SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK--RQVSTE-------EGERKAKE 148 (179)
T ss_dssp --HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred --HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc--CcCCHH-------HHHHHHHH
Confidence 22246799999999985444333 23455454443322 389999999998654 322110 01122222
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....+ +..|+.++.+++++++.|.+.+.+
T Consensus 149 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 149 LNVMF------IETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp HTCEE------EEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred cCCeE------EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 22222 334667778999999988776543
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.65 E-value=1.2e-15 Score=114.13 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCCCcceeeEeEeee--ee--CCcEEEEEeCCCCCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTV--LK--DGQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~--~~--~~~~~~~iDtpG~~~~~~~ 85 (228)
.....+|+|+|++|+|||||++.+.+........ .....|......... .. ....+.++||||.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-- 88 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN-- 88 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence 3445799999999999999999998765421110 001122222221111 11 23358999999965431
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccccEEEEEeCCCCCccchhhHHHHh
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~----~~~~~~~llv~~~~D~~~~~~~~~~~~~ 161 (228)
. ........+|++++|+|++...+......++.+...+. .....|+++|+||+|+... ....+
T Consensus 89 -----~----~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~-- 155 (198)
T 3t1o_A 89 -----A----SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM-- 155 (198)
T ss_dssp -----H----HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH--
T ss_pred -----H----HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH--
Confidence 1 12223457799999999984444444443333333221 1123489999999998654 22222
Q ss_pred hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
..++.+.... ...+..||.++.+++++++.|.+.+.+.
T Consensus 156 -------~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 156 -------VRAVVDPEGK-----FPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -------HHHHHCTTCC-----SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHhcCC-----ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 1122221111 0223467888899999999988877653
No 123
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.64 E-value=1e-15 Score=127.21 Aligned_cols=170 Identities=14% Similarity=0.097 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccC------------CCCCcceeeEeEeee----eeCCcEEEEEeCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASA------------GSSGVTKTCEMKTTV----LKDGQVVNVIDTPGL 79 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~------------~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~ 79 (228)
.+..+|+++|+.|+|||||+|+|++..... .+. .....+......... ......+.++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 445899999999999999999999853211 000 000000000000000 011256899999994
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~ 158 (228)
.+ +...+......+|++++++++.++. ......++.++... +.+ |+++++||+|+... .+..
T Consensus 86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~ 148 (403)
T 3sjy_A 86 EV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEAL 148 (403)
T ss_dssp GG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHH
T ss_pred HH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHH
Confidence 22 2222333345679999999999776 44555566555443 332 79999999999866 5554
Q ss_pred HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
...+. +.+........ ....+..||.++.++++|++.|.+.++..
T Consensus 149 ~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 149 SQYRQ-----IKQFTKGTWAE---NVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHH-----HHHHHHhhCCC---CCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 44443 33333221110 01234567888899999999999877653
No 124
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=7.5e-15 Score=108.10 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.+..+|+|+|++|+|||||++.+++..... ...|...........++ ..+.++||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-----LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-----CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------h
Confidence 355899999999999999999999876522 11222221111112233 3578999999543 1
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
.++ +.+|++++|+|++++.|..... +++.+...... ....|+++|.||+|+.....+.+. .....++
T Consensus 68 ~~~----~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~~ 136 (178)
T 2iwr_A 68 KFS----GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG-------DARARAL 136 (178)
T ss_dssp HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC-------HHHHHHH
T ss_pred HHH----HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC-------HHHHHHH
Confidence 122 2459999999998655555443 44445444321 112389999999998421001111 0012222
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+..... ..+..||.++.+++++++.+.+.+..
T Consensus 137 ~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 137 XADMKRC-----SYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHSSE-----EEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhhcCC-----eEEEEeccccCCHHHHHHHHHHHHHH
Confidence 2222111 12345677889999999988776654
No 125
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.64 E-value=1.3e-15 Score=113.78 Aligned_cols=166 Identities=11% Similarity=0.022 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+++|++|+|||||++.+++..... ...|....... ...++..+.++||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEE-LAIGNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEE-EEETTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEE-EEECCEEEEEEECCCCHHHH-----------HH
Confidence 445799999999999999999999875421 12222222222 22456789999999954321 11
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHH
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (228)
.......+|++++|+|++++-+..... ++..+..... ....|+++++||+|+.... .+++.+.+....... +..
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~-- 159 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG-SQR-- 159 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC------
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccc-ccc--
Confidence 223456789999999998665555433 3333332211 1224899999999986530 022222222100000 000
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
......+ ..+..||.++.+++++++.|.+
T Consensus 160 ~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 160 IEGQRPV---EVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CCSSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccceE---EEEEeECCcCCCHHHHHHHHHh
Confidence 0000101 1234688888999999998764
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=121.80 Aligned_cols=163 Identities=11% Similarity=0.018 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
+..+|+|+|.+|+|||||++.|++...... ..|........ ......+.++||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEE-ecCcEEEEEEECCCCHhHH-----------HHH
Confidence 446899999999999999999998764221 12333333322 2466789999999933221 112
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+... .........+.. ...
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~--~~~~~i~~~~~~-------~~~ 296 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDKLGL-------HSL 296 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHHTC-------TTC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc--cCHHHHHHHhch-------hhh
Confidence 22345679999999998666655433 2222222111 112389999999998765 433332222000 001
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....+ ..+..||.++.+++++++.|.+.+.+
T Consensus 297 ~~~~~---~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 297 RHRNW---YIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CSSCE---EEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hcCCC---EEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 11101 12345778889999999999887765
No 127
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.64 E-value=3e-15 Score=112.52 Aligned_cols=169 Identities=11% Similarity=0.030 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+++|++|||||||++.+++...... ..|....... ...++..+.++||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEE-LTIAGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEE-EEETTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-----CCCCCceeEE-EEECCEEEEEEECCCcHhhH-----------HH
Confidence 4457899999999999999999998764211 1121111122 22455789999999944321 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHH---
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKE--- 171 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~--- 171 (228)
.......+|++++|+|++++-+.... .++..+..... ....|+++|+||+|+.... .+++.+.+.......-..
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 22344578999999999865555443 33433332211 1224899999999986430 122222222100000000
Q ss_pred HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
+.+.....+ ..+..||.++.+++++++.|.+.
T Consensus 165 ~~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 165 LKELNARPL----EVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCSCCE----EEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccCceE----EEEEEECCCCCCHHHHHHHHHHh
Confidence 000000111 22446888899999999987653
No 128
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=113.07 Aligned_cols=169 Identities=20% Similarity=0.116 Sum_probs=95.0
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~ 91 (228)
.+.....+|+|+|.+|||||||+|.|++........ ...+.+...... ..++ ..+.++||||..... .
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~i~Dt~g~~~~~-------~ 87 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRI-MVDKEEVTLVVYDIWEQGDAG-------G 87 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEE-EETTEEEEEEEECCCCCSGGG-------H
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEE-EECCEEEEEEEEecCCCccch-------h
Confidence 344556899999999999999999998654311111 111211111111 1233 347889999964310 1
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
.+.. ......|++++|+++++.-|.... .++..+...... ...|+++|.||+|+... +.+.. . ...
T Consensus 88 ~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~--~-----~~~ 154 (195)
T 3cbq_A 88 WLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS--REVSL--E-----EGR 154 (195)
T ss_dssp HHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTT--CCSCH--H-----HHH
T ss_pred hhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhcccc--CCcCH--H-----HHH
Confidence 1111 122356999999999855444433 355444443221 12389999999998654 22210 0 122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
++.+..... .+..||.++.+++++++.+.+.+...
T Consensus 155 ~~a~~~~~~------~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 155 HLAGTLSCK------HIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHTTCE------EEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCE------EEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 233322211 23457778899999999998877654
No 129
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-15 Score=117.12 Aligned_cols=163 Identities=18% Similarity=0.116 Sum_probs=95.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+|+|++|+|||||++.|++...... .....+.+....... ..+ ..+.++||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLE-IEGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEECCCccchhh-----------
Confidence 347999999999999999999998764211 111222222222222 233 4689999999544321
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........+|++++|++++...+.... .++..+....... .|+++|+||+|+... +.+.. ....++.+
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHL--RAVPT-------EESKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG--CCSCH-------HHHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence 122345678999999999855554443 3455555443222 389999999998653 22210 01222332
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.....+ +..||.++.+++++++.|.+.+.+.
T Consensus 147 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 147 ENQLLF------TETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HTTCEE------EECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HcCCEE------EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 222111 2346777899999999988877653
No 130
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=5.1e-15 Score=123.22 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeee--------------C--------CcEE
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVV 71 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~ 71 (228)
+.++..+|+++|+.++|||||+++|+|..... ........|........... . ...+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 34556899999999999999999999764211 11111233443322111100 1 1568
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
.++||||. .++...+......+|+++++++++++. .....+.+..+.. ++.+ |+++++||+|+.
T Consensus 84 ~iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~ 148 (408)
T 1s0u_A 84 SFVDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLV 148 (408)
T ss_dssp EEEECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSS
T ss_pred EEEECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCC
Confidence 99999992 344445555556889999999998665 5556665555443 2332 799999999987
Q ss_pred ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. .+.....++ +.++++..... ....+..||.++.++++|++.|.+.++.
T Consensus 149 ~~--~~~~~~~~~-----i~~~l~~~~~~---~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 149 DE--KQAEENYEQ-----IKEFVKGTIAE---NAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp CT--TTTTTHHHH-----HHHHHTTSTTT---TCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CH--HHHHHHHHH-----HHHHHhhcCCC---CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 65 322111111 22222211000 0122446788889999999999987764
No 131
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=1e-15 Score=130.51 Aligned_cols=173 Identities=14% Similarity=0.076 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
.+..+|+|+|.+|+|||||+|.|++.... . ...|......... ..+..+.++||||.... ...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~---~~~T~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--T---TIPTVGFNVETVT-YKNVKFNVWDVGGQDKI-----------RPL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--C---CCCCSSEEEEEEE-SSSCEEEEEEECCCGGG-----------SGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--C---cCCccceeEEEEE-eCCEEEEEEECCCcHHH-----------HHH
Confidence 45579999999999999999999987641 1 1224333333332 46678999999994322 122
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.......+|++++|+|++++-+..... ++..+..... ....|++||+||+|+... ............ ..
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~-------~~ 452 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA--MKPHEIQEKLGL-------TR 452 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC--CCHHHHHHHTTC-------TT
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC--CCHHHHHHHhch-------hh
Confidence 334557889999999998655555443 3333322111 112489999999998754 333222221000 00
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 219 (228)
...... ..+..||.++.+++++++.|.+.+..........+
T Consensus 453 ~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 453 IRDRNW---YVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp CCSSCE---EEEECBTTTTBTHHHHHHHHHHHCC----------
T ss_pred hhcCCe---EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 111111 12456888899999999999998877655544433
No 132
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.63 E-value=3.1e-15 Score=113.83 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeC-----------CcEEEEEeCCCCCCCCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSAG 85 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~~iDtpG~~~~~~~ 85 (228)
..+|+|+|+.|+|||||+|.|++.... .....|.... ........ ...+.++||||.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------ 94 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------ 94 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------
Confidence 468999999999999999999987541 1111222111 11111111 346899999991
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
..+..........+|++++|+|++...+..... .++..+.... ...|+++|+||+|+... +.+..
T Consensus 95 -----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~---- 161 (217)
T 2f7s_A 95 -----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE---- 161 (217)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH----
T ss_pred -----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccc--cccCH----
Confidence 223333334456789999999998544433322 2232222111 22489999999998653 22210
Q ss_pred cCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
....++.+...-.+ +..++.++.+++++++.|.+.+.+
T Consensus 162 ---~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 162 ---RQARELADKYGIPY------FETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp ---HHHHHHHHHTTCCE------EEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHCCCcE------EEEECCCCCCHHHHHHHHHHHHHH
Confidence 01222333322222 345667788999999888776654
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=8.6e-16 Score=129.79 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~-~~~~~~~ 96 (228)
+.+|+|+|.+|+|||||+|+|++.... .+...+.|+..........++..+.++||||+. +.....+.. .+.....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA--IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC--CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC--ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 368999999999999999999987531 122233333322222233567789999999987 543221110 0111222
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
+ ..+|++++|+|+++..+..+.+.++.+ .. +|+++|+||+|+... ..... +.+. +
T Consensus 321 ~----~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~--~~~~~---------~~~~---~ 375 (482)
T 1xzp_A 321 I----EKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK--INEEE---------IKNK---L 375 (482)
T ss_dssp H----HHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC--CCHHH---------HHHH---H
T ss_pred h----hcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc--cCHHH---------HHHH---h
Confidence 3 355999999999877787766554432 22 389999999998643 22211 1111 1
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
... ...+..||.++.++++|++.|.+.+.
T Consensus 376 ~~~----~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 376 GTD----RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCS----TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred cCC----CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 110 12245678888999999998887644
No 134
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.63 E-value=5e-15 Score=123.38 Aligned_cols=170 Identities=12% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeee--------------C--------CcEEE
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVVN 72 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~ 72 (228)
.++..+|+++|+.++|||||+++|+|..... ........|....+...... . ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3445799999999999999999999764211 11111233443322211100 0 15689
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 73 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
++||||. .++...+......+|++++|++++++. .......+..+..+ +.+ |+++++||+|...
T Consensus 87 iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~ 151 (410)
T 1kk1_A 87 FIDAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVD 151 (410)
T ss_dssp EEECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSC
T ss_pred EEECCCh-----------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCC
Confidence 9999992 334444444455779999999998665 55666666555433 333 7999999999886
Q ss_pred cchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
. .+.....++ +.++....... ....+..||.++.++++|++.|.+.++.
T Consensus 152 ~--~~~~~~~~~-----i~~~l~~~~~~---~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 152 K--EKALENYRQ-----IKEFIEGTVAE---NAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp H--HHHHHHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred H--HHHHHHHHH-----HHHHHHhcCcC---CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 5 443332332 33333211000 0122345778889999999999987764
No 135
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=2.6e-14 Score=108.06 Aligned_cols=174 Identities=14% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc---HHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVG 90 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~~~ 90 (228)
+..++.+|+|+|++|||||||+|+|+|.... ....... .+...... . ..+ .+.++||||+....... +.+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~- 95 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKW- 95 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHH-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHH-
Confidence 4556789999999999999999999987621 1111111 11111111 1 112 57789999986432111 111
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.....+......++.+++++++....+..+.+..+++.. .+ .|++++.||+|.... .+....+.. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~ 163 (210)
T 1pui_A 96 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VR 163 (210)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HH
T ss_pred HHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HH
Confidence 1111112222356789999999986677655444444332 11 268889999998754 322211121 22
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.+.......+ .. .+.++.+..+++++++.|.+.+.+
T Consensus 164 ~~~~~~~~~~-~~---~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 164 EAVLAFNGDV-QV---ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHGGGCSCE-EE---EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHhcCCCC-ce---EEEeecCCCCHHHHHHHHHHHHhh
Confidence 3333222111 11 234677788999999999887765
No 136
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=2.6e-15 Score=111.45 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee----eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
.+|+|+|++|||||||++.|++......+....+...+....... ......+.++||||.. ++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH-----------HHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HHHH
Confidence 589999999999999999999863211111111122222111111 0134568999999932 1111
Q ss_pred HHhhccCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~-s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.........+++++|++++++. +... ..|+..+.....+ .|+++|.||+|+... ..+...... ...
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~-------~~~ 139 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS---SPVILVGTHLDVSDE--KQRKACMSK-------ITK 139 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTT---CEEEEEEECGGGCCH--HHHHHHHHH-------HHH
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCC---CcEEEEEECCCcccc--hhhHHHHHH-------HHH
Confidence 1112223458899999997542 2222 3455545443222 379999999998754 443322111 111
Q ss_pred HhcCCe-EEEeeCCCcccccch-HHHHHHHHHHHHHHHhc
Q 027090 174 QLCDNR-CVLFDNKTKDEAKGT-EQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~ 211 (228)
..+... +......+..||.++ .++++|++.|.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 222110 000001233566677 48999999988877653
No 137
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.4e-14 Score=108.65 Aligned_cols=164 Identities=19% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
...+|+|+|.+|+|||||+|.+++... +..... +.+.+...... ..++. .+.++||+|... ...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i-~~~~~~~~l~~~Dt~g~~~----------~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTL-MVDGESATIILLDMWENKG----------ENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEE-EETTEEEEEEEECCTTTTH----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEE-EECCeeeEEEEeecCCCcc----------hhh
Confidence 447899999999999999999997532 111111 11111111111 23333 467899998321 111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
..........+++++|++++++-|..... ++..+..... ....|++||.||+|+... +.+... . ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~--r~v~~~--e-----~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC--REVSVS--E-----GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG--CCSCHH--H-----HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC--ceEeHH--H-----HHHHH
Confidence 12234456789999999998655554433 3333433211 112489999999998643 322110 0 11122
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
...+.. .+..||.++.+++++++.|.+.+..
T Consensus 173 ~~~~~~------~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 173 VVFDCK------FIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp HHHTCE------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222211 1345888899999999998877754
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=2.8e-17 Score=124.08 Aligned_cols=169 Identities=16% Similarity=0.052 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
.+..+|+|+|.+|+|||||++.+++..... ....|+.......... ....+.++||||.... .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------D 92 (204)
Confidence 456899999999999999999998765421 1112221111111111 2334679999994332 1
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--CchHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PKPLK 170 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~~~~ 170 (228)
.........+|++++|+|++++.+.... .++..+...... .|+++|+||+|+... ......+.... .-...
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~---~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
Confidence 2222334567999999999865555543 455555543322 389999999998754 32222211100 00111
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
+..+.+...- ....+..||.++.+++++++.|.+.
T Consensus 168 ~~~~~~~~~~--~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 168 QGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 1112221110 0133557888999999999887654
No 139
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.62 E-value=2.4e-14 Score=117.15 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|++|||||||+|+|+|....... ....|.+..... ....+..+.++||||+..... .. ..+.+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~-i~~~g~~v~l~DT~G~i~~lp-~~-lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYA-IPINNRKIMLVDTVGFIRGIP-PQ-IVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEE-EEETTEEEEEEECCCBCSSCC-GG-GHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEE-EEECCEEEEEEeCCCchhcCC-HH-HHHHHHHHHH-
Confidence 35999999999999999999998652221 112222222222 224567789999999754321 11 1122222222
Q ss_pred ccCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 100 AKDGIHAFLVVFSVTNRF--SQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~--s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
....+|.+++++|+++.. +..... +.+++.. ++.. ..|+++|+||+|.... . ....... ...+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence 345779999999987443 222222 2333333 2211 2389999999998754 2 1111111 11111221
Q ss_pred -CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
.... ..++.|+.++.++++|++.|.+.+.....
T Consensus 324 ~~~~~----~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 324 YSPIF----DVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CSCEE----EEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred cCCCC----cEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 1111 11456788889999999999998887543
No 140
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.61 E-value=5.5e-16 Score=118.42 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=97.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
......+|+|+|.+|||||||+|.++..............+....... .......+.++||||.......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~--------- 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQEKFGGL--------- 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE-ETTEEEEEEEEEECSGGGTSCC---------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEeCCChHHHhHH---------
Confidence 334557999999999999999999554332111011111122111111 1122346899999994432211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+|++++|+++++..+.... .++..+.....+ .|+++|+||+|+... ..... ... +.
T Consensus 81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~--~~~~~-~~~--------~~ 144 (221)
T 3gj0_A 81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIKDR--KVKAK-SIV--------FH 144 (221)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSSSC--SSCGG-GCC--------HH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCccccc--cccHH-HHH--------HH
Confidence 11123467999999999855444443 355555554322 389999999998754 32111 111 22
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 212 (228)
+..... .+..|+.++.+++++++.|.+.+....
T Consensus 145 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 145 RKKNLQ------YYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHHTCE------EEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 222222 234577888999999999988887653
No 141
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.61 E-value=9.5e-15 Score=117.13 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~ 96 (228)
...+|+|+|.+|+|||||+|.+++....... .....|...............+.++||||... ..+.+. ..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQ 73 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhH
Confidence 3579999999999999999999887432111 12234444444433323466799999999321 111111 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.......+|++++|+|+++.-+..... +...+..........|+++++||+|+...
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 223346789999999999766666553 33444333211112389999999998763
No 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.60 E-value=2.3e-17 Score=124.08 Aligned_cols=163 Identities=18% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
....+|+|+|.+|+|||||+|.|++....... ....+.+....... ..+ ..+.++||||.......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~--------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRTI--------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHHH---------
Confidence 34579999999999999999999987642111 11122222222222 233 45899999995443221
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
.......+|++++|+|+++..+.... .++..+...... ..|+++|+||+|+... +.+. ......+.
T Consensus 99 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~ 165 (199)
T 3l0i_B 99 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVD-------YTTAKEFA 165 (199)
T ss_dssp --SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC----CCCC-------SCC-CHHH
T ss_pred --HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc--ccCC-------HHHHHHHH
Confidence 12234578999999999865554443 344444433222 2389999999998654 2211 01122222
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+...- ..+..||.++.+++++++.|.+.+.+
T Consensus 166 ~~~~~------~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 166 DSLGI------PFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HTTTC------CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHcCC------eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22221 24556888999999999988766544
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.60 E-value=1.8e-14 Score=120.77 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEeEeee
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTV 64 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~ 64 (228)
.+.+...+|+++|+.++|||||++.|++....... ......|.+.......
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 44556689999999999999999999654210000 0012345554444333
Q ss_pred eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCcccc
Q 027090 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVF 137 (228)
Q Consensus 65 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s-------~~~~~~l~~~~~~~~~~~~ 137 (228)
..+..+.++||||.. ++...+......+|++++++|++.+.. ...+..+.++... +.+
T Consensus 92 -~~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v~-- 156 (439)
T 3j2k_7 92 -TEKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVK-- 156 (439)
T ss_pred -cCCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CCC--
Confidence 456689999999942 333334444557899999999986543 3445554444432 322
Q ss_pred ccEEEEEeCCCCCc
Q 027090 138 DYMIVVFTGGDDLE 151 (228)
Q Consensus 138 ~~~llv~~~~D~~~ 151 (228)
++++++||+|...
T Consensus 157 -~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 -HLIVLINKMDDPT 169 (439)
T ss_pred -eEEEEeecCCCcc
Confidence 4899999999854
No 144
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.58 E-value=5.5e-14 Score=116.57 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccc----------c----CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA----------S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~----------~----~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 83 (228)
+..+|+++|+.++|||||+++|++...... . ......|......... .....+.++||||.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~---- 76 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGH---- 76 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSH----
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCCh----
Confidence 347999999999999999999987421000 0 0012334443332222 34577999999992
Q ss_pred CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
.++...+......+|+++++++++.+........+.++... +-+ ++++++||+|.... .+.+....++
T Consensus 77 -------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~vp---~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVE---HVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred -------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CCC---eEEEEEECcccCCC-HHHHHHHHHH
Confidence 23444555566789999999999977777777776655442 222 37889999998753 0222222222
Q ss_pred cCCchHHHHHHhcCCeEEEeeCCCcccccchH---------H-HHHHHHHHHHHHHh
Q 027090 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ 210 (228)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~l~~~i~~~~~~ 210 (228)
++++.+...-.- -....++.||.++. + +.+|++.|.+.++.
T Consensus 145 -----~~~~l~~~~~~~-~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 145 -----IRELLTEFGYKG-EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -----HHHHHHHTTSCT-TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -----HHHHHHHcCCCc-ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 444444332100 00011233554433 3 88999999887765
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=7.9e-15 Score=121.58 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=98.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
...|+|+|+||||||||+++|++..... .....++........... ...+.++|+||+.+.......+...+.+.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i---~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~- 232 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH- 232 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEE---CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH-
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccc---cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH-
Confidence 4579999999999999999999885421 222333222222222233 36789999999865321111111122222
Q ss_pred hhccCCccEEEEEEeCC----CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090 98 GMAKDGIHAFLVVFSVT----NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~----~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (228)
...++.++++++++ ..++.+++++..+..++.. +|.++++||+|.... ..+..+.+ ..
T Consensus 233 ---~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~----~P~ILVlNKlDl~~~--~~~~~l~~---------~l 294 (416)
T 1udx_A 233 ---IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLR----RPSLVALNKVDLLEE--EAVKALAD---------AL 294 (416)
T ss_dssp ---HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHH----SCEEEEEECCTTSCH--HHHHHHHH---------HH
T ss_pred ---HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhc----CCEEEEEECCChhhH--HHHHHHHH---------HH
Confidence 24679999999986 1133344444444433322 368899999998754 33322222 22
Q ss_pred HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 213 (228)
+.... ..+..||.++.++++|++.|.+.+.+...
T Consensus 295 ~~~g~------~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 295 AREGL------AVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HTTTS------CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HhcCC------eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 21111 12345667789999999999999987554
No 146
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=2.4e-14 Score=115.05 Aligned_cols=126 Identities=12% Similarity=0.123 Sum_probs=66.8
Q ss_pred CcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCCccEEEEEEeC-CCCCCHHHH-HHHHHHHHHhCccccccEEEE
Q 027090 68 GQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEE-TAVHRLPNLFGKNVFDYMIVV 143 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv 143 (228)
...+.++||||+...... .....+.+..........+|+++++++. ...++..+. ..++.+. .. .+|+++|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~--~~~~i~v 204 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PE--GKRTIGV 204 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SS--CSSEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CC--CCcEEEE
Confidence 346899999998753210 0111122333333444577999999987 334443332 3333332 11 2389999
Q ss_pred EeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccc---hHHHHHHHHHHHHHHHhc
Q 027090 144 FTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 144 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~~~~ 211 (228)
+||+|.... .. ....++.. ...+...++ .....++.+ ..++.++++.+.+.++..
T Consensus 205 ~NK~Dl~~~--~~~~~~~~~~~--------~~~~~~~~~---~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 205 ITKLDLMDK--GTDAMEVLTGR--------VIPLTLGFI---GVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp EECTTSSCS--SCCCHHHHTTS--------SSCCTTCEE---ECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred EcCcccCCc--chHHHHHHhCC--------CccCCCCeE---EEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 999998765 32 22222210 000111222 233344444 578889999999888874
No 147
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=9.1e-15 Score=118.12 Aligned_cols=168 Identities=17% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
...+|+++|.+|+|||||++.+++... ......|+..........++.. +.++||||..... .
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------R 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------T
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------H
Confidence 347999999999999999999987654 1122233332222222234443 5699999954321 2
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc--CC---ch
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CP---KP 168 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~--~~---~~ 168 (228)
........+|++++|+|++++.+.... .++..+..... ..|+++|+||+|+... ......+... +. ..
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 222345688999999999865555554 35555555433 2389999999998654 3322222211 11 12
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..++.+..... ..+..||.++.+++++++.|.+.+..
T Consensus 294 ~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 294 GLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCc-----EEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 22333332210 12345777889999999998876643
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.57 E-value=2.6e-14 Score=122.14 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 77 (228)
+.++|+|+|++|+|||||+|+|++..... .. ......|........ .+.+..+.++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEECC
Confidence 45799999999999999999996211000 00 000112222222222 2567789999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
|..+.. .+.... ...+|++++|+|+..+.+......+..+... . .|+++++||+|....
T Consensus 91 G~~df~-------~~~~~~----l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-------EDTYRT----LTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCS
T ss_pred CchhHH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCccc
Confidence 976643 233333 3466999999999988888888777665432 2 279999999998654
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.55 E-value=4.5e-14 Score=117.41 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=100.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC----------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 79 (228)
..+..+|+++|+.++|||||+++|++.... .+. .....|......... .....+.++||||.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA-ENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHH-SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhh-cCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCCh
Confidence 345589999999999999999999873100 000 011233333222222 34567999999995
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HH
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LE 158 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~ 158 (228)
.+. ...+......+|+++++++++++.......++..+... +-+ ++++++||+|.... .+ +.
T Consensus 86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~ip---~iivviNK~Dl~~~--~~~~~ 148 (405)
T 2c78_A 86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDD--PELLD 148 (405)
T ss_dssp GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCC--HHHHH
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEECccccCc--HHHHH
Confidence 531 22222334577999999999877777777777666543 222 38889999998743 33 22
Q ss_pred HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHH------------------HHHHHHHHHHHHHh
Q 027090 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIVQ 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~~i~~~~~~ 210 (228)
....+ +.++.+.....- -....+..||.++.+ +.+|++.+.+.++.
T Consensus 149 ~~~~~-----~~~~l~~~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 149 LVEME-----VRDLLNQYEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHH-----HHHHHHHTTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH-----HHHHHHHhcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 22222 344444332100 000123346666655 78888888887764
No 150
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=4.3e-14 Score=106.17 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|||||||++.|+|...... ...+.+.+....... .++. .+.++||||.......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~----------- 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI----------- 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhh-----------
Confidence 36899999999999999999998764211 111222222222222 3343 4678999994332111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
........+++++|+++....+.... .++..+....... .|+++++||+|+... +.... .....+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~i~~v~nK~Dl~~~--~~~~~-------~~a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHL--RAVPT-------DEARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHHH
Confidence 11122456899999998854444433 3444443322122 379999999998643 22110 012233333
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
.. +.+++ .++.+..+++++++.|.+.+.+
T Consensus 140 ~~--~~~~d----~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NN--LSFIE----TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cC--CeEEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence 22 22222 4667778899999888776654
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.55 E-value=7.6e-14 Score=114.43 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|+.++|||||+++|+. ...|.+....... ..+..+.++||||..+. .......+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~~--- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITAL--- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHHH---
Confidence 899999999999999999981 1233333333322 45667999999996543 12333332
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe-CCCCCccchhhHHHHhhccCCchHHHHHHhcCC-
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (228)
..+|++++++| .........+.+.++... +.+ .+++++| |+|. .. +.+....++ ++++.+....
T Consensus 82 -~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~~ 147 (370)
T 2elf_A 82 -NISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVLQ 147 (370)
T ss_dssp -HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTTT
T ss_pred -HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 46799999999 767777777766666543 323 3478888 9998 54 444433333 3333322211
Q ss_pred eEEEeeCCCc--ccccc---hHHHHHHHHHHHHHHHh
Q 027090 179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 179 ~~~~~~~~~~--~~~~~---~~~~~~l~~~i~~~~~~ 210 (228)
.+. .++ .||.+ +.++++|++.|.+.++.
T Consensus 148 ~~~----ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 148 DWE----CISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TCE----EEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ceE----EEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 111 123 57777 89999999999887765
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.7e-14 Score=106.49 Aligned_cols=130 Identities=10% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
....+|+|+|++|||||||+|+|++........ ....++.. ......+.++||||....... +..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKLRYK-------LSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceee------eecCCeEEEEECCCCchHHHH-------HHHH
Confidence 455799999999999999999999876422110 11111111 124556889999998665322 1222
Q ss_pred HhhccCCccEEEEEEeCC-CCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhh
Q 027090 97 LGMAKDGIHAFLVVFSVT-NRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~ 162 (228)
+......+|++++|+|++ ..-+.... .++..+...... ....|+++|+||+|.... ..+....+
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence 222224569999999987 32222221 223222222110 112389999999999865 55544443
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=2e-13 Score=111.75 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-----CCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCC-----
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAG----- 85 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~----- 85 (228)
..+|+|+|++|+|||||+|+|++...+..+... ...|.......... ..+ ..+.++||||+++....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999887654332210 01233222222111 122 25899999999654321
Q ss_pred --cHHHHHHHHHHHhhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc
Q 027090 86 --SEFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (228)
Q Consensus 86 --~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~ 153 (228)
...+...+..++... ..++|+++++++. ...+...+..+++.+ ... .|+++|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence 111111111222211 1356788888876 456666665544433 223 389999999999876
Q ss_pred hhhHHHH
Q 027090 154 EKTLEDF 160 (228)
Q Consensus 154 ~~~~~~~ 160 (228)
+++..+
T Consensus 190 -~ev~~~ 195 (361)
T 2qag_A 190 -KERERL 195 (361)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 665543
No 154
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=7.3e-14 Score=111.38 Aligned_cols=173 Identities=13% Similarity=0.101 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc--C-CCCCc----------------------ceee-------------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--A-GSSGV----------------------TKTC------------- 58 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~--~-~~~~~----------------------t~~~------------- 58 (228)
....+|+|+|.+|+|||||+|+|+|......+ . ...+. ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34469999999999999999999998752111 1 10110 1000
Q ss_pred -----------EeEeeeeeCCcEEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHH
Q 027090 59 -----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETA 124 (228)
Q Consensus 59 -----------~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~ 124 (228)
-...........+.++||||+..... ..+...+.+...+.......+.++ +++++...++..+..
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~- 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence 00000001135789999999876432 011111122222333333455554 788987666555432
Q ss_pred HHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHH
Q 027090 125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL 203 (228)
Q Consensus 125 l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (228)
.++...... ..|+++|+||+|.... .. ....++.. ...+...+ ...+..||.++.+++++++.
T Consensus 183 -~~~~~~~~~--~~~~i~V~NK~Dl~~~--~~~~~~~~~~~--------~~~~~~~~---~~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 183 -KIAKEVDPQ--GQRTIGVITKLDLMDE--GTDARDVLENK--------LLPLRRGY---IGVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp -HHHHHHCTT--CSSEEEEEECGGGSCT--TCCCHHHHTTC--------SSCCTTCE---EECCCCCCBCTTSCBCHHHH
T ss_pred -HHHHHhCCC--CCeEEEEEEccccCCC--CchHHHHHhCC--------cCcCCCCc---EEEECCChhhccccccHHHH
Confidence 223222111 2389999999998754 32 22222210 00000111 23456688888899899888
Q ss_pred HHH
Q 027090 204 VNS 206 (228)
Q Consensus 204 i~~ 206 (228)
+.+
T Consensus 247 l~~ 249 (299)
T 2aka_B 247 LAA 249 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.54 E-value=6.6e-14 Score=118.87 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcc-c----------------------------ccCCCCCcceeeEeEeeeeeCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAF-K----------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (228)
+..+|+++|..|+|||||++.|++.... . ........|.+....... ...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence 3479999999999999999999755110 0 000112334443333332 456
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccEE
Q 027090 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~l 141 (228)
..+.++||||..+ +...+......+|++++|+|++.+ +.......+.++.. .+.+ |++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEE
Confidence 7899999999632 222233334567999999999854 33444444444443 2322 699
Q ss_pred EEEeCCCCCc
Q 027090 142 VVFTGGDDLE 151 (228)
Q Consensus 142 lv~~~~D~~~ 151 (228)
+++||+|+..
T Consensus 176 vviNK~Dl~~ 185 (483)
T 3p26_A 176 IAMNKMDNVD 185 (483)
T ss_dssp EEEECGGGGT
T ss_pred EEEECcCccc
Confidence 9999999875
No 156
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=1.3e-13 Score=104.92 Aligned_cols=122 Identities=11% Similarity=0.110 Sum_probs=72.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
....+|+|+|++|+|||||++.|++...... ......++.. ......+.++||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~------~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA------DYDGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEET------TGGGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEE------EeeCceEEEEECCCcHHHH-------HHHHHH
Confidence 4457999999999999999999998764211 1111222111 1234568999999975421 223333
Q ss_pred HhhccCCccEEEEEEeCC-CCCCHH-HHHHHHHHHHHhC--ccccccEEEEEeCCCCCcc
Q 027090 97 LGMAKDGIHAFLVVFSVT-NRFSQE-EETAVHRLPNLFG--KNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~~~s~~-~~~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~ 152 (228)
+......+|++++|+|++ ..-+.. ..+++..+..... .+...|+++++||+|+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 332223469999999997 333322 2233333333211 1112389999999999765
No 157
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.52 E-value=9.9e-14 Score=113.61 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee-----------------------------------------
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC----------------------------------------- 58 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~----------------------------------------- 58 (228)
..|+|+|++|||||||+|+|+|......+.. .+|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~--~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSS--SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCC--cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4999999999999999999999765222211 111000
Q ss_pred -------------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHH
Q 027090 59 -------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (228)
Q Consensus 59 -------------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~ 123 (228)
-...........+.++||||+...... .....+.+..........+|+++++++... .......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCCHH
Confidence 000001112345899999999876321 112223344444444567899999987652 2222234
Q ss_pred HHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 124 ~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
++.++....... +|+++|+||+|....
T Consensus 192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPSG--DRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred HHHHHHHhcccC--CCEEEEEeCCccCCC
Confidence 455555443222 379999999998754
No 158
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.52 E-value=3.4e-14 Score=125.26 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee---EeE-----eeee------------------------
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---EMK-----TTVL------------------------ 65 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~---~~~-----~~~~------------------------ 65 (228)
...+|+|+|.+|+|||||+|+|+|......+. .+.|... .+. ....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~--~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDV--NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC--CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC--CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45799999999999999999999987533322 2222100 000 0000
Q ss_pred ---------------------eCC----cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHH
Q 027090 66 ---------------------KDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120 (228)
Q Consensus 66 ---------------------~~~----~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~ 120 (228)
... ..+.++||||+.+... .........+.+|++++|++++..++..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~ 217 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG 217 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence 000 3589999999764211 1111222234679999999998788887
Q ss_pred HHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+...+... +.. ..+|+++|+||+|....
T Consensus 218 e~~~l~~~---l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 218 ERRYLENY---IKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHH---TTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHHHHH---HHh-hCCCEEEEEECcccccc
Confidence 77654322 111 11379999999998644
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.52 E-value=1.9e-13 Score=114.60 Aligned_cols=159 Identities=12% Similarity=0.107 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccc------------cC-----------------CCCCcceeeEeEeeee
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SA-----------------GSSGVTKTCEMKTTVL 65 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~------------~~-----------------~~~~~t~~~~~~~~~~ 65 (228)
++..+|+++|+.++|||||+++|++... +.. +. .....|.+...... .
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~-~ 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-S 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-E
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-e
Confidence 4457999999999999999999976531 000 00 00122333222222 2
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~ 145 (228)
.....+.++||||..+. ..... .....+|++++|++++.+......+.+.++... +.+ |+++++|
T Consensus 101 ~~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~---~iIvviN 165 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAIN 165 (434)
T ss_dssp CSSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEE
T ss_pred cCCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEE
Confidence 34567999999994321 12222 234577999999999977777777777666543 322 6899999
Q ss_pred CCCCCccchhhHHHHhhccCCchHHHHHHhcC--CeEEEeeCCCcccccchHHHHH
Q 027090 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ 199 (228)
Q Consensus 146 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 199 (228)
|+|+.....+.+....+. +.++.+... .... ..++.||.++.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~---~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTM---AFVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEE---EEEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCc---eEEEEeccCCCCccc
Confidence 999875311333333333 444544443 1111 113345556666655
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.50 E-value=4.2e-16 Score=132.81 Aligned_cols=164 Identities=13% Similarity=0.174 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (228)
.+|+|+|+.|+|||||+++|++...... .....|............+..+.++||||..+.. ..+..
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHHHH
Confidence 5899999999999999999987654222 2234444443333332245578999999965432 22233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
....+|++++|++++++....+...+..+... .. |+++++||+|........+...+. +....+..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~l~--------~~~~~~e~- 137 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKELL--------AYDVVCED- 137 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSHHH--------HTTSCCCC-
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHHHH--------hhhhhHHh-
Confidence 45678999999999988888777766665542 22 799999999986431111111111 11101110
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+-.....++.||.++.++++|++.|..+++.
T Consensus 138 ~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 138 YGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp SSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred cCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 0000123567889999999999999887764
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.50 E-value=1.1e-13 Score=103.34 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
..+|+|+|.+|+|||||+|.+++... +..... +.+.+...... ..++. .+.++||+|..... +.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~Dt~~~~~~~-------~~~-- 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTL-MVDGESATIILLDMWENKGEN-------EWL-- 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEE-EETTEEEEEEEECCCCC-----------CTT--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEE-EECCeEEEEEEEEeccCcchh-------hhH--
Confidence 47899999999999999999986432 111110 11111111111 23343 45789999854310 000
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (228)
........|++++|++++++-|..... ++..+...... ...|+++|.||+|+... +.+.. .. ...+..
T Consensus 74 -~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~--r~v~~--~~-----~~~~a~ 142 (192)
T 2cjw_A 74 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRX--REVSV--SE-----GRAXAV 142 (192)
T ss_dssp -GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGG--CCSCH--HH-----HHHHHH
T ss_pred -HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhcc--ccccH--HH-----HHHHHH
Confidence 011123458999999998655555443 44444443221 12389999999998643 22210 00 111222
Q ss_pred hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
..+..+ +..||.++.+++++++.+.+.+..
T Consensus 143 ~~~~~~------~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 143 VFDXKF------IETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp HTTCEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HhCCce------EEeccccCCCHHHHHHHHHHHHHh
Confidence 222111 345788889999999988877654
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=1.3e-12 Score=97.43 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~ 96 (228)
..+|+|+|++|||||||++.|++...+. ....+.+.+....... .++. .+.++||||.........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~~--------- 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAITS--------- 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhhhH---------
Confidence 4689999999999999999999876521 1122223222222222 3443 356799999754332111
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
......+.++++++.....+.... .++..+...... ..|+++++||+|+... ..... .....+...
T Consensus 97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~--~~~~~-------~~a~~l~~~ 163 (191)
T 1oix_A 97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHL--RAVPT-------DEARAFAEK 163 (191)
T ss_dssp --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc--cccCH-------HHHHHHHHH
Confidence 112355889999998744333332 244433332211 2378999999998643 21110 012233333
Q ss_pred cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 208 (228)
.. +.+++ .++.+..+++++++.|.+.+
T Consensus 164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NG--LSFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 22 22223 46677789999998886643
No 163
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=6.8e-14 Score=120.25 Aligned_cols=140 Identities=19% Similarity=0.276 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--------------------------------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-------------------------------- 64 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 64 (228)
....+|+|+|..|+|||||+|+|+|.............|+........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 345799999999999999999999987521112222222221110000
Q ss_pred ----eeCC---cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccc
Q 027090 65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNV 136 (228)
Q Consensus 65 ----~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~ 136 (228)
.... ..+.++||||+.+.....-...-.+..........+|++++|+++.. ..+..+..+++.+... .
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~- 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E- 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G-
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C-
Confidence 0000 25789999998763211000000011222222346699999999985 3666666665554321 2
Q ss_pred cccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 137 FDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 137 ~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
.|+++|+||+|.... +++...+..
T Consensus 219 -~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 219 -DKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp -GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred -CCEEEEEECCCccCH--HHHHHHHHH
Confidence 279999999999876 666655544
No 164
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=1.5e-13 Score=121.02 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee-----------------------------------------
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC----------------------------------------- 58 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~----------------------------------------- 58 (228)
.+|+|+|..++|||||+|+|+|......+.. .+|...
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4899999999999999999999875322211 111100
Q ss_pred ----------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHH-HH
Q 027090 59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEE-TA 124 (228)
Q Consensus 59 ----------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~s~~~~-~~ 124 (228)
-...+.......+.++||||+...... .......+...+... ....|++++|+++...+...+. ..
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 000011112234789999999874321 111112222222222 2578999999999866666665 33
Q ss_pred HHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHH
Q 027090 125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL 203 (228)
Q Consensus 125 l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (228)
++.+. ... +|+++|+||+|.... ... ...+.. +... ....+...+..||.++.++++|.+.
T Consensus 210 l~~L~---~~g--~pvIlVlNKiDlv~~--~~~~~~il~~----------~~~~-l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 210 AKEVD---PQG--QRTIGVITKLDLMDE--GTDARDVLEN----------KLLP-LRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHC---TTC--SSEEEEEECTTSSCT--TCCSHHHHTT----------CSSC-CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHH---hcC--CCEEEEEeCcccCCc--chhhHHHHHH----------Hhhh-hhccCCceEEecccccccchhHHHH
Confidence 33332 212 389999999999865 321 111111 0000 0012335667888999999999988
Q ss_pred HHH---HHHh
Q 027090 204 VNS---VIVQ 210 (228)
Q Consensus 204 i~~---~~~~ 210 (228)
+.+ .+++
T Consensus 272 I~~e~~ffpe 281 (772)
T 3zvr_A 272 LAAERKFFLS 281 (772)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccC
Confidence 876 4555
No 165
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=112.58 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=79.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..-+|+|+|.+++|||||+|+|++... .+.+++.||...........+..+.++||||+.............+...+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~---~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTES---EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCC---CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 345899999999999999999999764 23445556665555556678889999999999876544333334444443
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc-ccccEEEEEeCCCC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDD 149 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~-~~~~~llv~~~~D~ 149 (228)
. .+|++++|+|+.+++ .+.+.+..-+..+... ..+|.++++||.|.
T Consensus 148 ~----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 R----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp H----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred H----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 3 459999999987432 2333333222222211 12478889999985
No 166
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.48 E-value=2.6e-13 Score=110.84 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCCcc-----------------------eee----------------
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVT-----------------------KTC---------------- 58 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~--~~~~~~t-----------------------~~~---------------- 58 (228)
.+|+|+|.+|+|||||+|+|+|......+ ......+ +..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999998752111 1111011 000
Q ss_pred --------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhcc-CCccEEEEEEeCCCCCCHHHHHHHHH
Q 027090 59 --------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHR 127 (228)
Q Consensus 59 --------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~s~~~~~~l~~ 127 (228)
............+.++||||+...... .....+.+...+.... ...+++++++++...+...+. +.+
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i 189 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV 189 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence 000001011356999999998764321 1111122222222222 344667777777644444433 233
Q ss_pred HHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 128 LPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 128 ~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
+....... .|+++|+||+|.... .. ....++. ... ..... +...+..||.++.+++++++.+.+
T Consensus 190 ~~~~~~~~--~~~i~V~NK~Dl~~~--~~~~~~~~~~-~~~-------~l~~~---~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQG--QRTIGVITKLDLMDE--GTDARDVLEN-KLL-------PLRRG---YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTTC--TTEEEEEECGGGSCT--TCCCHHHHTT-CSS-------CCTTC---EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcCC--CceEEEeccccccCc--chhHHHHHhC-Ccc-------cccCC---ceEEEeCCcccccccccHHHHHHH
Confidence 43332222 389999999998754 22 2222221 000 00011 123455688888888888887765
No 167
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=9.2e-13 Score=109.29 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=79.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----CCcceeeEeEeeee---eCCcEEEEEeCCCCCCCCCCcH--
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSE-- 87 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~-- 87 (228)
.-...|+|+|+||||||||+|+|+|...+..+... ...+.......... .....+.++||||+........
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 33467999999999999999999998763332110 01122211111111 1123589999999876432111
Q ss_pred -HHHH----HHHHHH-------hhcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 88 -FVGK----EIVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 88 -~~~~----~~~~~~-------~~~~--~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.... .+..++ .... ..+|++++++..+ ..++..+..+++.+. .. .++++|+||+|....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~--v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EK--VNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TT--SEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----cc--CcEEEEEEcccCccH
Confidence 1101 111111 0111 3456778887775 578887766655443 22 279999999999876
Q ss_pred chhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
.++..+.+. +.+.+....-.+ ...++.+..++++++..+..
T Consensus 183 --~ev~~~k~~-----i~~~~~~~~i~~------~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 --EECQQFKKQ-----IMKEIQEHKIKI------YEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp --HHHHHHHHH-----HHHHHHHHTCCC------CCCC----------------
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeE------EeCCCCCCcCHHHHHHHHHh
Confidence 666655554 444443332221 22234444556555555444
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.46 E-value=2.8e-12 Score=116.53 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=101.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~ 80 (228)
...+..+|+++|+.++|||||+++|++..... .......+|......... .....+.++||||.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGH- 369 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGH- 369 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCH-
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCCh-
Confidence 34456899999999999999999998741100 000112233332222212 34567999999992
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-ED 159 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~ 159 (228)
.++...+......+|++++|++++++.....+..+.++... +-+ ++++++||+|.... .+. ..
T Consensus 370 ----------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gIP---~IIVVINKiDLv~d--~e~le~ 433 (1289)
T 3avx_A 370 ----------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GVP---YIIVFLNKCDMVDD--EELLEL 433 (1289)
T ss_dssp ----------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TCS---CEEEEEECCTTCCC--HHHHHH
T ss_pred ----------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CCC---eEEEEEeecccccc--hhhHHH
Confidence 33445555566789999999999877777777777666543 222 37889999999753 332 22
Q ss_pred HhhccCCchHHHHHHhcCC---eEEEeeCCCcccccch--------HHHHHHHHHHHHHHHh
Q 027090 160 FLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~ 210 (228)
...+ +.++.+...- .+ ..++.||.++ .++.+|++.|.+.++.
T Consensus 434 i~eE-----i~elLk~~G~~~~~v----p~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 434 VEME-----VRELLSQYDFPGDDT----PIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHH-----HHHHHHHTTSCTTTC----CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHH-----HHHHHHhccccccce----eEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2222 4444443321 01 1123455554 5688999988876653
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.46 E-value=6.6e-13 Score=114.83 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeee---------------eeCCcEEEEEeCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTV---------------LKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~---------------~~~~~~~~~iDtpG~~~~ 82 (228)
.+|+|+|+.++|||||+++|++........ +..|.. ....... ......+.++||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~--ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccC--CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 589999999999999999998765421111 122221 1111100 011225899999997654
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~ 151 (228)
... +......+|++++|+++++++.......+..+... . .|+++++||+|...
T Consensus 84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH 136 (594)
T ss_dssp TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence 321 12334578999999999987777777766665432 2 27999999999863
No 170
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.45 E-value=1.6e-14 Score=117.35 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+.......... ......-.+++.|.+....+..++
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G----~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~en 125 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG----SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN 125 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHH
Confidence 3456789999999999999999999999875554 222221111000 001223456677776654433332
Q ss_pred HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+. +.....+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|...
T Consensus 126 v~~~~~~~~~~~~~~~~~v~~lL~~v--gL~~--~~~~~~~~LSGGqkQRVaIArAL~~~P~---lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 126 VALPLELDNTPKDEVKRRVTELLSLV--GLGD--KHDSYPSNLSGGQKQRVAIARALASNPK---VLLCDQATSALDPAT 198 (366)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHH--TCGG--GTTCCTTTSCHHHHHHHHHHHHTTTCCS---EEEEESTTTTSCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCccCCHHH
Confidence 21 0111111110 0000 0011125799999999999999998884 666 889999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.++++. +|++..+...|++.+++.+|.+..
T Consensus 199 ~--~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 199 T--RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp H--HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred H--HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 7 77777766542 899999999999999999887653
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.44 E-value=8.8e-13 Score=114.01 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc------------CCCCCcceeeEeEeeeee--C--CcEEEEEeCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF 80 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~ 80 (228)
.-++|+|+|+.++|||||+++|+.... .... ......|........... + ...+.++||||..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 347899999999999999999975210 0000 001123333222222211 1 2468999999965
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~ 160 (228)
+. ..++...+. .+|++++|+|+.++.+......+..+... . .|+++++||+|.... . ....
T Consensus 83 dF-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a--~-~~~v 143 (599)
T 3cb4_D 83 DF-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAA--D-PERV 143 (599)
T ss_dssp GG-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTC--C-HHHH
T ss_pred HH-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCcccc--c-HHHH
Confidence 42 234444444 34999999999878887777655544432 2 279999999998754 2 2222
Q ss_pred hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+. +.+.. ... ....+..||.++.++++|++.|.+.++..
T Consensus 144 ~~e-----i~~~l---g~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 144 AEE-----IEDIV---GID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHH-----HHHHT---CCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHH-----HHHHh---CCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 222 22221 110 01245568888899999999999888764
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.44 E-value=5.2e-13 Score=114.80 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=89.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--------ee---eeCCcEEEEEeCCCCCCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TV---LKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~---~~~~~~~~~iDtpG~~~~~~ 84 (228)
.....+|+|+|.+|||||||+|.|++.... .....|....... .. ......+.++||||......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~ 113 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA 113 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH
Confidence 345589999999999999999999987642 1112222211111 11 11246799999999544332
Q ss_pred CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~ 164 (228)
... .+ ....+++++|+|++.. .....++..+.....+ .|+++|+||+|.... ..+.. +
T Consensus 114 ~~~-------~~----l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~--~~v~~--~-- 171 (535)
T 3dpu_A 114 SHQ-------FF----MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPS--YNIEQ--K-- 171 (535)
T ss_dssp TCH-------HH----HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTT--CCCCH--H--
T ss_pred HHH-------HH----ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCC---CCEEEEEECCCcccc--cccCH--H--
Confidence 211 11 2246999999999732 3334566666665332 389999999998754 22110 0
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.+++....... ..+..||.++.++++|++.|.+.+.+.
T Consensus 172 ---~~~~~~~~~~~------~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 172 ---KINERFPAIEN------RFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ---HHHHHCGGGTT------CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred ---HHHHHHHhcCC------ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 01111111111 134467788899999999998888764
No 173
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.44 E-value=1.6e-14 Score=118.00 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+......... .......-.+++.+.++...+..+++.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG----DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe----EEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 356679999999999999999999999875554 22222111100 001122345667776665543333221
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.....+... +... +.-.....+|+|++|++.+++++..+|. ++| |++.+|.... ..+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~p~~LSGGqrQRVaiArAL~~~P~---lLLLDEPts~LD~~~~--~~l 172 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVL--QLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPS---VFLLDEPLSNLDAALR--VQM 172 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHT--TCGG--GTTCCGGGSCHHHHHHHHHHHHHHHCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred HcCCCHHHHHHHHHHHHHHc--CCch--hhcCChhHCCHHHHHHHHHHHHHHcCCC---EEEEECCCcCCCHHHH--HHH
Confidence 1111111111 1110 0001114799999999999999998884 555 8899998766 666
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
...++++. +|++.++...|++++++.+|.+...
T Consensus 173 ~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 66665442 8999999999999999999986543
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.44 E-value=1.2e-12 Score=112.98 Aligned_cols=164 Identities=16% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccc-c-----------CCCCCcceeeEeEeeeee--C--CcEEEEEeCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF 80 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~ 80 (228)
.-++|+|+|+.++|||||++.|+.... ... + .....+|........... + ...+.++||||..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 447899999999999999999965210 000 0 001122322221111111 1 2468899999965
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~ 160 (228)
+. ..++.+.+. ..|++++|+|+.++.+..+...+..+... .. |+++++||+|.... . ....
T Consensus 85 dF-------~~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~i--piIvviNKiDl~~a--~-~~~v 145 (600)
T 2ywe_A 85 DF-------SYEVSRALA----ACEGALLLIDASQGIEAQTVANFWKAVEQ---DL--VIIPVINKIDLPSA--D-VDRV 145 (600)
T ss_dssp GG-------HHHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHHHHHT---TC--EEEEEEECTTSTTC--C-HHHH
T ss_pred hH-------HHHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHHHHHC---CC--CEEEEEeccCcccc--C-HHHH
Confidence 42 234444443 56999999999988888777665554432 22 79999999998754 2 2222
Q ss_pred hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
.++ +.+..... ....+..||.++.++++|++.|.+.++..
T Consensus 146 ~~e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 KKQ--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHH--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHH--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 222 22221110 01245678888999999999998888764
No 175
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=102.94 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-----CCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcH---
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSE--- 87 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~--- 87 (228)
..+++|+|+||||||||+|+|+|...+.+|... ...+......... ..-...++++|+||++.......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 368999999999999999999998765554211 0111111111111 11123579999999976443211
Q ss_pred HHHH----HHHHHHhh----------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 88 FVGK----EIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 88 ~~~~----~~~~~~~~----------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
...+ .+...... ...++++.+++++.. .+++..+.+.++.+... .+++++++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 1111 11111111 112468888888854 67888887766665432 279999999999987
Q ss_pred chhhHHHHhhc
Q 027090 153 HEKTLEDFLGH 163 (228)
Q Consensus 153 ~~~~~~~~~~~ 163 (228)
.++..+.+.
T Consensus 156 --~e~~~~k~~ 164 (270)
T 3sop_A 156 --EEKSEFKQR 164 (270)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 777766665
No 176
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.44 E-value=1.2e-14 Score=113.77 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~~ 90 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ . .........+.+.|.+....+..+++.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~ 122 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG----EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc----EEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence 356679999999999999999999998775544 2221111100 0 000011234555565544322222211
Q ss_pred H---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 91 K---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 91 ~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
- .+...+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGqkQRv~lAraL~~~p~---lllLDEPts~LD~~~~ 195 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKV--GLKD--KAHAYPDSLSGGQAQRVAIARALAMEPK---IMLFDEPTSALDPEMV 195 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHT--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--HhcCChhhCCHHHHHHHHHHHHHHCCCC---EEEEeCCcccCCHHHH
Confidence 0 011111111 0000 0001114799999999999999998884 665 8899998877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+++.. +|++..+...|+..+++.++.+.
T Consensus 196 --~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 196 --GEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp --HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred --HHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 77777765542 89999999999999999888764
No 177
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.44 E-value=1.8e-14 Score=112.79 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-----------e-----eeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------T-----VLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-----------~-----~~~~~~~~~~iDtpG~ 79 (228)
-+++..++|+|+||||||||+++|+|...+.+|. +........ . .........+.+.|.+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA----IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE----EEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 4567799999999999999999999987755542 221111100 0 0001112345565665
Q ss_pred CCCCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090 80 FDLSAGSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV-- 142 (228)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll-- 142 (228)
+...+..+++.- .+...+... +....+ .-.....+|+|+++++.++++++.+|. ++|
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~-~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLD 178 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERA-QGKYPVHLSGGQQQRVSIARALAMEPD---VLLFD 178 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHH-HTSCGGGSCHHHHHHHHHHHHHHTCCS---EEEEE
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchh-hcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEe
Confidence 543332222210 011111111 110000 011114799999999999999998884 666
Q ss_pred -EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 143 -VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 143 -v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
|++.+|.... ..+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 179 EPts~LD~~~~--~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 179 EPTSALDPELV--GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp STTTTSCHHHH--HHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8899998877 77777665432 89999999999999998888764
No 178
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.44 E-value=2.6e-14 Score=115.96 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-----eeeeeCCcEEEEEeCCCCCCCCCCcHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-----TTVLKDGQVVNVIDTPGLFDLSAGSEF-- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~iDtpG~~~~~~~~~~-- 88 (228)
-+++..++|+|+||||||||+++|.|...+.+| .+....... .........-.+++.+.++...+..++
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~ 102 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG----EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA 102 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE----EEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc----EEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence 356679999999999999999999999876555 222221111 000011222445565555433222111
Q ss_pred ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
..+.+...+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|....
T Consensus 103 ~~l~~~~~~~~~~~~~v~~~l~~~--gL~~--~~~r~~~~LSGGq~QRValArAL~~~P~---lLLLDEPts~LD~~~r- 174 (359)
T 3fvq_A 103 YGLGNGKGRTAQERQRIEAMLELT--GISE--LAGRYPHELSGGQQQRAALARALAPDPE---LILLDEPFSALDEQLR- 174 (359)
T ss_dssp TTSTTSSCCSHHHHHHHHHHHHHH--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH-
T ss_pred HHHHHcCCChHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence 111122222211 0000 0001114799999999999999998884 655 8899998766
Q ss_pred hhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 154 EKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 154 ~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+...+.+. . +|++.++...|++++++.+|++...
T Consensus 175 -~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 175 -RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 6665433322 1 8999999999999999999886543
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=5.2e-12 Score=100.83 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC-CcccccCC----CCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCc---
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAG----SSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGS--- 86 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~-~~~~~~~~----~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~--- 86 (228)
-..+|+|+|++|+|||||+|+|+|. ..+.++.. ....+......... ......+.++||||++......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3478999999999999999999987 43333310 00112111111111 1123468999999985432110
Q ss_pred HHHHHHH----HHHHhhc---------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 87 EFVGKEI----VKCLGMA---------KDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 87 ~~~~~~~----~~~~~~~---------~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
......+ ..++... ..++++++++.+.+. .+...+. +++..+. .. .++++|+||.|....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~-~~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH-NK--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHT-TT--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHH-hc--CCEEEEEEeCCCCCH
Confidence 1111111 0122111 124566777777543 4777664 3344332 22 279999999999865
Q ss_pred chhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+++....+. +.+..+...- .....+|.++ +++++++.+.+.+.+
T Consensus 171 --~e~~~~~~~-----~~~~~~~~~~------~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 --KERERLKKR-----ILDEIEEHNI------KIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTC------CCCCCC----------CHHHHHHHHT
T ss_pred --HHHHHHHHH-----HHHHHHHcCC------eEEecCCccc-cccHHHHHHHHHhhc
Confidence 555433333 3333333321 2344577777 899988887777654
No 180
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.42 E-value=4e-14 Score=115.11 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=101.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT------TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~------~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTG----ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE----EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence 356679999999999999999999999876555 2222211111 011112234566666655433222211
Q ss_pred --------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 --------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 --------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+.+...+... +.... .-.....+|+|++|++.++++++.+|. ++| |++.+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~--~~~~~~~LSGGq~QRvalAraL~~~P~---lLLLDEP~s~LD~~~r 176 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKIL--DIHHV--LNHFPRELSGAQQQRVALARALVKDPS---LLLLDEPFSNLDARMR 176 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCGGGH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc--CCchH--hcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHHHH
Confidence 11111222211 00000 001114799999999999999998884 655 8899999877
Q ss_pred chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.++++. +|+..++...|++.+++.+|.+..
T Consensus 177 --~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 177 --DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp --HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 77777665542 899999999999999998887643
No 181
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.42 E-value=2.4e-14 Score=110.42 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-------CCcEEEEEeCCCCCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------DGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+............ ......+.+.|.+....+..++
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG----EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce----EEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 356679999999999999999999998875544 22221111000000 0112345566665544322222
Q ss_pred H-----------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090 89 V-----------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD 148 (228)
Q Consensus 89 ~-----------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D 148 (228)
+ .+.....+... +.... +.-.....+|+|+++++.++++++.+|. ++| |++.+|
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGq~QRv~iAral~~~p~---llllDEPts~LD 177 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMA--ELEER-FANHKPNQLSGGQQQRVAIARALANNPP---IILADQPTWALD 177 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHT--TCCGG-GTTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSC
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHC--CCChh-hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCC
Confidence 1 11111122111 00000 0001124799999999999999998884 666 889999
Q ss_pred CCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 149 DLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.... ..+.+.+.++. +|++. +...|++.+++.+|.+..
T Consensus 178 ~~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 178 SKTG--EKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVER 225 (235)
T ss_dssp HHHH--HHHHHHHHHHHHHHCCEEEEECSCHH-HHTTSSEEEEEETTEEEE
T ss_pred HHHH--HHHHHHHHHHHHHcCCEEEEEcCCHH-HHHhCCEEEEEECCEEEE
Confidence 8877 77777665432 89987 567899888888887643
No 182
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.42 E-value=1.8e-14 Score=110.28 Aligned_cols=157 Identities=15% Similarity=0.013 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------eC-CcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------KD-GQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~-~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
+++..++|+|+||||||||+++|+|...+.+| .+........... .. .....+.+.|.+....+..++.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 103 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEG----KVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV 103 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE----EEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHH
Confidence 45679999999999999999999998775544 2222111110000 00 1234556666665443332222
Q ss_pred HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.- .+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 104 IVPMLKMGKPKKEAKERGEYLLSEL--GLGD--KLSRKPYELSGGEQQRVAIARALANEPI---LLFADEPTGNLDSANT 176 (224)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHT--TCTT--CTTCCGGGSCHHHHHHHHHHHHTTTCCS---EEEEESTTTTCCHHHH
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCCCCCCHHHH
Confidence 10 011111111 0000 0001114799999999999999998884 666 8899998877
Q ss_pred chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090 153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT 187 (228)
Q Consensus 153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 187 (228)
..+.+.+.+.. +|++..+ ..|+..+++.++.+
T Consensus 177 --~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 177 --KRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKV 217 (224)
T ss_dssp --HHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred --HHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEE
Confidence 77777665432 7888776 78888888877754
No 183
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=106.61 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCeE--EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC---cEEEEEeCCCCCCCCCCcH----
Q 027090 17 NGERT--VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSE---- 87 (228)
Q Consensus 17 ~~~~~--i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~---- 87 (228)
.++.. ++|+|+||+|||||+|+|+|........................... ..+.++|+||++.......
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 45556 99999999999999999999854111111111111111111111111 2589999999986432111
Q ss_pred ---HHHHHHHHHHhhc---------c--CCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 88 ---FVGKEIVKCLGMA---------K--DGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 88 ---~~~~~~~~~~~~~---------~--~~~~~-il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.....+..++... . .++|+ ++++.+...+++..+...++.+ .. .. |+++|+||+|....
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L---~~-~~--~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL---DS-KV--NIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---CS-CS--EEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---hh-CC--CEEEEEcchhccch
Confidence 1112222222211 1 12454 5566677667888885544433 22 22 79999999999877
Q ss_pred chhhHHHHhhc
Q 027090 153 HEKTLEDFLGH 163 (228)
Q Consensus 153 ~~~~~~~~~~~ 163 (228)
.++..+.+.
T Consensus 192 --~E~~~l~~~ 200 (427)
T 2qag_B 192 --SELTKFKIK 200 (427)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 666665554
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.41 E-value=7.3e-13 Score=103.37 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred CccEEEEEEeCCCC--CCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090 103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (228)
Q Consensus 103 ~~~~il~v~~~~~~--~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
.+|++++|+|+++. .|.... .++..+......+ ..|+++|.||+|+... +.+.. ..++.......
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~-~~piilV~NK~Dl~~~--~~v~~---------~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT-KKPIVVVLTKCDEGVE--RYIRD---------AHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT-TCCEEEEEECGGGBCH--HHHHH---------HHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC-CCCEEEEEEccccccc--HHHHH---------HHHHHHhcCCC
Confidence 57999999999865 676654 3555554432111 2389999999998654 44421 22233221111
Q ss_pred EEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
..+..||.++.+++++++.|.+.+.
T Consensus 230 -----~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 230 -----QVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp -----CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 1234577888999999998877654
No 185
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.41 E-value=9.3e-15 Score=114.62 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=96.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF---- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~---- 88 (228)
-.++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.+.+....+..+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG----ECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC----EEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGG
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhh
Confidence 346679999999999999999999998775444 22221111000 0000112334444443222111111
Q ss_pred --------HHHHHHHHHhhc--cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC------ccccccEEE---EEeCCCC
Q 027090 89 --------VGKEIVKCLGMA--KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG------KNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 89 --------~~~~~~~~~~~~--~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~------~~~~~~~ll---v~~~~D~ 149 (228)
..+.....+... ....+ .....+|+|+++++.++++++. +|. ++| |++.+|.
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~---lLllDEPts~LD~ 180 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQ------RDYRVLSGGEQQRVQLARVLAQLWQPQPTPR---WLFLDEPTSALDL 180 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTT------SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE---EEEECCCCSSCCH
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhc------CCcccCCHHHHHHHHHHHHHhcccccCCCCC---EEEEeCccccCCH
Confidence 001111222111 00011 1114699999999999999987 663 555 8899998
Q ss_pred CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
... ..+.+.++++. +|++..+...|++.+++.+|.+..
T Consensus 181 ~~~--~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 181 YHQ--QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHH--HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHH--HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 876 77776665432 899999999999999999987654
No 186
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.40 E-value=6.3e-15 Score=114.89 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGK-- 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-- 91 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.|.+....+..+.+.-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA 113 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHH
Confidence 346679999999999999999999998775544 2221111000 00011223455666666543332222100
Q ss_pred ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.+...+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|.... ..
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~ 184 (256)
T 1vpl_A 114 GFYASSSSEIEEMVERATEIA--GLGE--KIKDRVSTYSKGMVRKLLIARALMVNPR---LAILDEPTSGLDVLNA--RE 184 (256)
T ss_dssp HHHCCCHHHHHHHHHHHHHHH--CCGG--GGGSBGGGCCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHHHH--HH
T ss_pred HHcCCChHHHHHHHHHHHHHC--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccccCHHHH--HH
Confidence 011111110 0000 0001114799999999999999998884 655 8899998877 77
Q ss_pred HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 185 l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 185 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 777665542 78999988889999888888764
No 187
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.8e-12 Score=111.45 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCC---------------CCCcceeeEeEeeeee
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLK 66 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~ 66 (228)
.++..+|+++|++|+|||||+|.|++...... +.. ..++|.+....... .
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-T 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-C
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-c
Confidence 34567999999999999999999987632100 000 02334443333322 4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcccccc
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDY 139 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~ 139 (228)
....+.++||||..+ +...+......+|++++|++++.+ ........+.++.. .+.+ +
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---N 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---E
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---e
Confidence 567899999999643 334445556789999999999732 22334444444433 2322 6
Q ss_pred EEEEEeCCCCCc
Q 027090 140 MIVVFTGGDDLE 151 (228)
Q Consensus 140 ~llv~~~~D~~~ 151 (228)
+++++||+|...
T Consensus 308 iIVVvNKiDl~~ 319 (611)
T 3izq_1 308 LIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECTTTTT
T ss_pred EEEEEecccccc
Confidence 999999999876
No 188
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.40 E-value=7.7e-14 Score=114.15 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~ 89 (228)
+++..++|+|+||||||||+++|+|...+.+| .+........ ........-.+.+.+.++...+..+++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 102 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG----QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc----EEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence 45679999999999999999999999876555 2222211111 011112234556666665544333322
Q ss_pred HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.- .+...+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|....
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 103 AFPLKLRKVPRQEIDQRVREVAELL--GLTE--LLNRKPRELSGGQRQRVALGRAIVRKPQ---VFLMDEPLSNLDAKLR 175 (372)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH--TCGG--GTTCCGGGSCHHHHHHHHHHHHHHTCCS---EEEEECTTTTSCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEECCCCccCCHHHH
Confidence 10 011111110 0000 0001114799999999999999998884 665 8899998776
Q ss_pred chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.++++. +|+..++...|++.+++.+|.+..
T Consensus 176 --~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 176 --VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp --HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred --HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 77776665432 799999999999999998887653
No 189
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.39 E-value=7.2e-14 Score=113.76 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=100.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK--- 91 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~--- 91 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG----KIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 356679999999999999999999999875554 2221111110 00011223455666666554333332210
Q ss_pred -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.+...+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|.... ..+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l 172 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKML--HIDK--LLNRYPWQLSGGQQQRVAIARALVKEPE---VLLLDEPLSNLDALLR--LEV 172 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHT--TCTT--CTTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESGGGGSCHHHH--HHH
T ss_pred hcCCCHHHHHHHHHHHHHHc--CCch--HhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHHH--HHH
Confidence 111111111 1100 0001114799999999999999998884 555 8899998877 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.++++. +|+..++...|++.+++.+|.+..
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 173 RAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 76665532 799999999999999998887653
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.39 E-value=5.8e-14 Score=113.95 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.+.++...+..+++.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 346679999999999999999999999875554 2222111100 0001122334556565554433333221
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +.... .-.....+|+|++|++.++++++.+|. ++| |++.+|.... ..+
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~--gL~~~--~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l 184 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFM--RLESY--ANRFPHELSGGQQQRVALARALAPRPQ---VLLFDEPFAAIDTQIR--REL 184 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTCCSSHHHH--HHH
T ss_pred HcCCCHHHHHHHHHHHHHHc--CChhH--hcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--HHH
Confidence 0111111111 00000 001114799999999999999998884 555 8899998877 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.++++. +|+..++...|+..+++.++.+..
T Consensus 185 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 185 RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 76665432 899999999999999998887653
No 191
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.39 E-value=8.2e-15 Score=123.94 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 98 (228)
..+|+++|+.++|||||+++|.+....... ....|......... .++..+.++||||..+... .+.
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~-----------~~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTS-----------MRA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTT-----------SBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHH-----------HHH
Confidence 368999999999999999999875432111 12334333333222 3456789999999655432 122
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
.....+|++++|++++++........+..+... . .|+++++||+|......+.+...+... .. +.+....
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~~~~~v~~~l~~~--~~---~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEADPDRVKNELSQY--GI---LPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTTCCCCTTCCCCCC--CC---CTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEeccccccCHHHHHHHHHHh--hh---hHHHhCC
Confidence 345678999999999866665556555554432 2 279999999998643112222222110 00 0000000
Q ss_pred eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (228)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 206 (228)
. ...++.||.++.++++|++.|..
T Consensus 140 ~----~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 E----SQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp S----CEEEECCTTTCTTCTTHHHHTTT
T ss_pred C----ccEEEEeeeeccCcchhhhhhhh
Confidence 0 11234678888999999998754
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.39 E-value=8e-12 Score=109.77 Aligned_cols=117 Identities=26% Similarity=0.236 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc--cccC-------C-------CCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KASA-------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~ 80 (228)
.+..+|+|+|++|+|||||+++|++.... ..+. . ...++........ ......+.++||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence 45689999999999999999999854321 0110 0 0122322222222 2456678999999965
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (228)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~ 150 (228)
+. ..+...++. ..|.+++++|+..+++.....++..+... . .|+++++||+|..
T Consensus 86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence 42 133444444 45999999999888888888777776543 2 2788999999986
No 193
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.38 E-value=1.7e-14 Score=111.61 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSE----- 87 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~----- 87 (228)
+++..++|+|+||||||||+++|+|...+.+| .+......... . ........+.+.|.++...+..+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG----KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 46679999999999999999999998775554 22211111000 0 00111234445454433211111
Q ss_pred --------HHHHHHHHHHhhc---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 88 --------FVGKEIVKCLGMA---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 88 --------~~~~~~~~~~~~~---~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
...+.+...+... ....+ .....+|+|+++++.++++++.+|. ++| |++.+|....
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~------~~~~~LSgGq~qrv~lAraL~~~p~---lllLDEPts~LD~~~~- 175 (240)
T 1ji0_A 106 AYNRKDKEGIKRDLEWIFSLFPRLKERLK------QLGGTLSGGEQQMLAIGRALMSRPK---LLMMDEPSLGLAPILV- 175 (240)
T ss_dssp GTTCCCSSHHHHHHHHHHHHCHHHHTTTT------SBSSSSCHHHHHHHHHHHHHTTCCS---EEEEECTTTTCCHHHH-
T ss_pred hhcCCCHHHHHHHHHHHHHHcccHhhHhc------CChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH-
Confidence 1101111111100 00011 1124799999999999999998884 665 8899998877
Q ss_pred hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+++.. +|++..+...|+..+++.++.+.
T Consensus 176 -~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 176 -SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp -HHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred -HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 77777665532 78999999999999998888764
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.2e-12 Score=108.10 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=44.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---------------------eeC---CcEEEEEeC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---------------------LKD---GQVVNVIDT 76 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~---~~~~~~iDt 76 (228)
+|+|+|.+|+|||||+|+|++... ...+.+.|+........ ..+ ...+.++||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~---~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV---EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC---cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 799999999999999999998763 12222222221111110 011 235899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (228)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (228)
||+....... +.+........+.+|++++|+|+..
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEeccc
Confidence 9986532111 1122222234578999999999974
No 195
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.38 E-value=1.1e-13 Score=107.76 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc----------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---------- 86 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---------- 86 (228)
+++..++|+|+||||||||+++|+|...+.+|. +. .......+.+.|.+....+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~----I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 94 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK----IE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTH 94 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE----EE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE----EE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhh
Confidence 456799999999999999999999987654441 11 011112233333332211111
Q ss_pred --------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090 87 --------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK 155 (228)
Q Consensus 87 --------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~ 155 (228)
....+.+...+... +.... .-.....+|+|+++++.++++++.+|. ++| |++.+|.... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgGq~qrv~lAraL~~~p~---lllLDEPts~LD~~~~--~ 165 (253)
T 2nq2_C 95 INTFAKPKSHDYQVAMQALDYL--NLTHL--AKREFTSLSGGQRQLILIARAIASECK---LILLDEPTSALDLANQ--D 165 (253)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHT--TCGGG--TTSBGGGSCHHHHHHHHHHHHHHTTCS---EEEESSSSTTSCHHHH--H
T ss_pred cccccCCCHHHHHHHHHHHHHc--CChHH--hcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence 11111122222211 00000 000114799999999999999999884 555 8899998877 7
Q ss_pred hHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCC
Q 027090 156 TLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNK 186 (228)
Q Consensus 156 ~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~ 186 (228)
.+.+.+.+. . +|++..+...|+..+++.++.
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 777666543 1 789999999999998888876
No 196
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.38 E-value=3.6e-14 Score=109.65 Aligned_cols=156 Identities=20% Similarity=0.124 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHH---------
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFV--------- 89 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~--------- 89 (228)
..++|+|+||||||||+++|+|...+.+|. +........ ..........+.+.|.+....+..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 100 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceE----EEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence 589999999999999999999997755541 111111000 000011112334444443321111110
Q ss_pred ---HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
.+.+...+... +... +.-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.+.+.+
T Consensus 101 ~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~---lllLDEPts~LD~~~~--~~~~~~l~~ 171 (240)
T 2onk_A 101 VERDRRVREMAEKL--GIAH--LLDRKPARLSGGERQRVALARALVIQPR---LLLLDEPLSAVDLKTK--GVLMEELRF 171 (240)
T ss_dssp HHHHHHHHHHHHTT--TCTT--TTTCCGGGSCHHHHHHHHHHHHHTTCCS---SBEEESTTSSCCHHHH--HHHHHHHHH
T ss_pred chHHHHHHHHHHHc--CCHH--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--HHHHHHHHH
Confidence 11122222211 0000 0001114799999999999999998884 555 8899998877 777776654
Q ss_pred cC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 164 EC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 164 ~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. +|++.++...|+..+++.++.+.
T Consensus 172 l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 31 78999999999999999888764
No 197
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.38 E-value=1e-11 Score=109.46 Aligned_cols=120 Identities=24% Similarity=0.306 Sum_probs=77.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC---CCcccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 79 (228)
.....+|+|+|+.|+|||||+|+|++ ......... ....|....... ..+.+..+.++||||.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~-~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATT-AAWEGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEE-EEETTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEE-EEECCeeEEEEECcCC
Confidence 34557999999999999999999984 211000000 112222222222 2345678999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
.+.. .+...++. .+|++++++|+..+.+..+...+..+... . .|+++++||+|....
T Consensus 86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence 7642 33444444 35999999999988888887776665432 2 279999999998754
No 198
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.38 E-value=6.5e-14 Score=113.90 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=99.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG---- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~---- 90 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ........-.+.+.+.++...+..+++.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG----EIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc----EEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 356679999999999999999999999875554 2221111100 0001122334556565554332222110
Q ss_pred ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
+.+...+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|.... ..+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSgGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l 172 (359)
T 2yyz_A 102 ARRISKDEVEKRVVEIARKL--LIDN--LLDRKPTQLSGGQQQRVALARALVKQPK---VLLFDEPLSNLDANLR--MIM 172 (359)
T ss_dssp SSCSHHHHTTHHHHHHHHHT--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred hcCCCHHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--HHH
Confidence 1111111111 0000 0001114799999999999999998884 665 8899998776 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.++++. +|+..++...|++.+++.+|.+..
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 173 RAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 76665432 799999999999999998887653
No 199
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.37 E-value=1.7e-12 Score=108.82 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC-ccc-c------------c---------------CCCCCcceeeEeEeeeeeC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-A------------S---------------AGSSGVTKTCEMKTTVLKD 67 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~-~~~-~------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (228)
++..+|+++|+.|+|||||+++|++.. .+. . + ......|.+....... ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cC
Confidence 345799999999999999999998541 000 0 0 0012344444333222 45
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccE
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~ 140 (228)
...+.++||||..+ +...+......+|++++|+|+.+. .....++.+.++.. .+.+ ++
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 67899999999553 223344456788999999999853 22233444433333 2322 68
Q ss_pred EEEEeCCCCCc
Q 027090 141 IVVFTGGDDLE 151 (228)
Q Consensus 141 llv~~~~D~~~ 151 (228)
++++||+|...
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999876
No 200
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.37 E-value=3.9e-12 Score=98.52 Aligned_cols=162 Identities=10% Similarity=0.006 Sum_probs=95.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC---------
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL--------- 82 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~--------- 82 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+........ ..........+.+.|.++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 99 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG----EITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYG 99 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS----CEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhh
Confidence 3456789999999999999999999998775554 2222111000 00001111233344433211
Q ss_pred --CCCcHHHHHHHHHHHhhc--cC----CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 83 --SAGSEFVGKEIVKCLGMA--KD----GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~--~~----~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
.........+........ .. +.+.. +-.....+|+|+++++.++++++.+|. +++ |++.+|...
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qrv~lAral~~~p~---lllLDEPts~LD~~~ 174 (243)
T 1mv5_A 100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE--VGERGVKISGGQRQRLAIARAFLRNPK---ILMLDEATASLDSES 174 (243)
T ss_dssp TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCE--ESTTSBCCCHHHHHHHHHHHHHHHCCS---EEEEECCSCSSCSSS
T ss_pred ccCCCCHHHHHHHHHHhChHHHHHhCccchhch--hccCcCcCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHH
Confidence 011111112222222111 00 11111 111224799999999999999998884 555 899999988
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.+.... +|++..+ ..|+..+++.++.+.
T Consensus 175 ~--~~i~~~l~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 175 E--SMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQIT 216 (243)
T ss_dssp C--CHHHHHHHHHHTTSEEEEECCSHHHH-HHCSEEEEEETTEEC
T ss_pred H--HHHHHHHHHhcCCCEEEEEeCChHHH-HhCCEEEEEECCEEE
Confidence 7 78877776542 7888776 469988888888764
No 201
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.37 E-value=2.3e-14 Score=116.19 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+........ ........-.+.+.+.++...+..+++.- ..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~-~~ 97 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG----RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF-GM 97 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE----EEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH-HH
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc----EEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH-HH
Confidence 356679999999999999999999999875554 2221111100 00001112355666666554443333211 00
Q ss_pred HHHhhcc-CCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 95 KCLGMAK-DGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 95 ~~~~~~~-~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
....... ..++.++-.+.+ ...+|+|++|++.++++++.+|. ++| |++.+|.... ..+.+.+++
T Consensus 98 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~---lLLLDEP~s~LD~~~~--~~l~~~l~~ 172 (348)
T 3d31_A 98 RMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK---ILLLDEPLSALDPRTQ--ENAREMLSV 172 (348)
T ss_dssp HHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS---EEEEESSSTTSCHHHH--HHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHHH--HHHHHHHHH
Confidence 0000000 000111111111 14799999999999999998884 665 8899998877 777776654
Q ss_pred cC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 164 EC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 164 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
+. +|+..++...|++.+++.+|.+..
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 31 799999999999999998887653
No 202
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.36 E-value=6.2e-14 Score=114.53 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=95.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCC---------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAG--------- 85 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~--------- 85 (228)
-+++..++|+|+||||||||+++|.|...+.+|. +........ ........-.+.+.+.++...+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~----I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR----IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceE----EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 3566799999999999999999999998765542 111111000 00001112234444433322111
Q ss_pred -----cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090 86 -----SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL 157 (228)
Q Consensus 86 -----~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~ 157 (228)
.....+.+...+... +... +.-.....+|+|++|++.++++++.+|. ++| |++.+|.... ..+
T Consensus 110 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l 180 (372)
T 1v43_A 110 IKKFPKDEIDKRVRWAAELL--QIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPD---VLLMDEPLSNLDAKLR--VAM 180 (372)
T ss_dssp --CCCHHHHHHHHHHHHHHT--TCGG--GTTSCTTTCCSSCHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred hcCCCHHHHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHHHH--HHH
Confidence 111111222222211 1100 0011125799999999999999998884 655 8899998776 777
Q ss_pred HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+.++++. +|+..++...|++.+++.++.+..
T Consensus 181 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 181 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 76665432 799999999999999998887653
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.36 E-value=4.3e-12 Score=101.48 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (228)
+|+++|..|+|||||++.+.+...+.. ......|........ .....+.+|||||-.....+. + .....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 589999999999999998886643221 111223332222221 234679999999965542110 0 01123
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhCccccccEEEEEeCCCCCcc
Q 027090 101 KDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 101 ~~~~~~il~v~~~~~~~s~~~~~~l~-~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+++++++++|+|.+++ ......++. ++.........-|++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 4578999999999866 444444332 22221111112378889999999764
No 204
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.36 E-value=1.1e-11 Score=106.13 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCccc--ccC------------------CCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDtp 77 (228)
+..+|+|+|+.|+|||||+++|++..... .+. .....|....... ..+.+..+.++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~-~~~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ-FPYHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE-EEETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE-EEECCeEEEEEECC
Confidence 45799999999999999999998532100 000 0111122211122 22466789999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
|..+.. .+.... ...+|++++|+++..+........+..+.. .. .|+++++||+|....
T Consensus 91 G~~df~-------~~~~~~----l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~---~~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-------EDTYRT----LTAVDCCLMVIDAAKGVEDRTRKLMEVTRL---RD--TPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHTT---TT--CCEEEEEECTTSCCS
T ss_pred CChhHH-------HHHHHH----HHHCCEEEEEEeCCccchHHHHHHHHHHHH---cC--CCEEEEEcCcCCccc
Confidence 976542 223333 346799999999987777666555544432 12 279999999998754
No 205
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.35 E-value=1.6e-11 Score=108.21 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=77.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhC---CCcccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG 78 (228)
+.....+|+|+|+.|+|||||+++|+. ......... ....|........ .+.+..+.++||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECcC
Confidence 344568999999999999999999983 210000000 1223333332222 24567899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
..+. ..+...++. .+|++++++|+..+.+......+..+... . .|+++++||+|....
T Consensus 87 ~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGA 144 (691)
T ss_dssp STTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred ccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccC
Confidence 7653 134444444 35999999999988888877766655432 2 279999999998754
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=1.4e-12 Score=106.54 Aligned_cols=123 Identities=18% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~ 146 (228)
.+..+.++||||+... + ... ...+|+++++++....-.. +.+. ..+. ..|.++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~---------~-~~~----~~~aD~vl~V~d~~~~~~~---~~l~---~~~~---~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---------E-VAV----ANMVDTFVLLTLARTGDQL---QGIK---KGVL---ELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH---------H-HHH----HTTCSEEEEEEESSTTCTT---TTCC---TTSG---GGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH---------H-HHH----HHhCCEEEEEECCCCCccH---HHHH---HhHh---hcCCEEEEEC
Confidence 4567899999997641 1 111 2567999999998622111 1111 1111 1278999999
Q ss_pred CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 219 (228)
+|.... ......... +.+...........+ ...+..||.++.++++|++.|.+.+.......++.+
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~ 293 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA 293 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH
Confidence 998754 444433333 333332221100000 123456888899999999999998876333334333
No 207
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.34 E-value=3.1e-12 Score=107.80 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC-ccc-------------ccCC---------------CCCcceeeEeEeeeeeCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-------------ASAG---------------SSGVTKTCEMKTTVLKDG 68 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~-~~~-------------~~~~---------------~~~~t~~~~~~~~~~~~~ 68 (228)
+..+|+++|+.++|||||+|+|++.. .+. .+.. ....|.+....... ...
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence 44789999999999999999998641 000 0000 12344443333222 456
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccccEE
Q 027090 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~-------~~~~~l~~~~~~~~~~~~~~~l 141 (228)
..+.++||||.. ++...+......+|++++++|++++... .....+.++.. .+-+ +++
T Consensus 85 ~~~~iiDtPGh~-----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHR-----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLI 149 (458)
T ss_dssp EEEEEEECCCCT-----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEE
T ss_pred ceEEEEECCCcH-----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEE
Confidence 679999999943 2333344556788999999999743211 33333333332 2222 588
Q ss_pred EEEeCCCCCc
Q 027090 142 VVFTGGDDLE 151 (228)
Q Consensus 142 lv~~~~D~~~ 151 (228)
+++||+|+..
T Consensus 150 vviNK~Dl~~ 159 (458)
T 1f60_A 150 VAVNKMDSVK 159 (458)
T ss_dssp EEEECGGGGT
T ss_pred EEEEcccccc
Confidence 9999999873
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=104.16 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~ 146 (228)
.+..+.++||||+... . ... ...+|.+++++++..+. ..+.+.. ..+. .|.++++||
T Consensus 165 ~~~~~iliDT~Gi~~~----~------~~l----~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS----E------FAV----ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C----H------HHH----HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh----h------hhH----HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence 4557899999997642 1 111 23679999999986321 1121111 1111 268889999
Q ss_pred CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+|.... ......... +.............+ ...+..|+.++.++++|++.|.+.++.
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 998643 322211121 211111111000000 112336788889999999999887754
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.33 E-value=1.9e-11 Score=105.01 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---CCCc---------------cc--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL---GRKA---------------FK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~---g~~~---------------~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 77 (228)
+.++|+|+|+.++|||||..+|+ |... .. .....+.+|+....... .+++..+.++|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEEeCC
Confidence 45899999999999999999884 1100 00 00112334444444433 3678889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
|..|.. .+..+.+... |.+++|+|+..+....+...++.+... .. |.++++||+|....
T Consensus 109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~---~l--p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR---AT--PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT---TC--CEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh---CC--ceEEEEecccchhc
Confidence 988764 5666666644 999999999989999998888777654 22 78999999998755
No 210
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.32 E-value=1.9e-13 Score=106.06 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF----- 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~----- 88 (228)
.++..++|+|+||||||||+++|+|...+. | .+......... ........++.+.|.++...+..++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-G----SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E----EEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e----EEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 456799999999999999999999987644 4 22221111000 0000112344454544322111111
Q ss_pred -------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc-------EEE---EEeCCCCCc
Q 027090 89 -------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-------MIV---VFTGGDDLE 151 (228)
Q Consensus 89 -------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-------~ll---v~~~~D~~~ 151 (228)
...++...+... +..+ .....+|+|+++++.++++++.+| + ++| |++.+|...
T Consensus 99 ~~~~~~~~~~~~l~~~~l~-~~~~------~~~~~LSgGq~qrv~lAraL~~~p---~~~~~~~~lllLDEPts~LD~~~ 168 (249)
T 2qi9_C 99 HDKTRTELLNDVAGALALD-DKLG------RSTNQLSGGEWQRVRLAAVVLQIT---PQANPAGQLLLLDEPMNSLDVAQ 168 (249)
T ss_dssp SSTTCHHHHHHHHHHTTCG-GGTT------SBGGGCCHHHHHHHHHHHHHHHHC---TTTCTTCCEEEESSTTTTCCHHH
T ss_pred ccCCcHHHHHHHHHHcCCh-hHhc------CChhhCCHHHHHHHHHHHHHHcCC---CcCCCCCeEEEEECCcccCCHHH
Confidence 111222221111 0011 111479999999999999998877 4 555 889999887
Q ss_pred cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. ..+.+.+++.. +|++..+...|+..+++.++.+.
T Consensus 169 ~--~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 169 Q--SALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp H--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred H--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7 77777665542 89999998999999988888754
No 211
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.32 E-value=2.1e-14 Score=112.94 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=95.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCC--CCCCCCCcHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPG--LFDLSAGSEF 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG--~~~~~~~~~~ 88 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+.......... ........+.+.|. +. ..+..++
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G----~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~ 105 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG----RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQD 105 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe----EEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHH
Confidence 356789999999999999999999998775544 222211111000 00111234555552 22 1111111
Q ss_pred H--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 V--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 ~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
+ .+.....+... +... +.-.....+|+|+++++.++++++.+|. ++| |++.+|...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGqkQRv~iAraL~~~P~---lLlLDEPts~LD~~~ 178 (275)
T 3gfo_A 106 VSFGAVNMKLPEDEIRKRVDNALKRT--GIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPK---VLILDEPTAGLDPMG 178 (275)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHT--TCGG--GTTSBGGGSCHHHHHHHHHHHHHTTCCS---EEEEECTTTTCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHH
Confidence 1 01111111111 0000 0001114799999999999999998884 555 889999887
Q ss_pred cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.++++. +|++..+...|++.+++.+|.+..
T Consensus 179 ~--~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 179 V--SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp H--HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred H--HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 6 66666654421 788888888899999998887653
No 212
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.31 E-value=2.1e-13 Score=108.68 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCC---------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLS--------- 83 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~--------- 83 (228)
-+++.+++|+|+||||||||+++|+|...+.+| .+......... .......-.+.+.|.++...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G----~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~ 152 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSG----CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR 152 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE----EEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc----EEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc
Confidence 356789999999999999999999998765544 22221110000 00011123444555444211
Q ss_pred --CCcHHHHHHHHHHHh------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 84 --AGSEFVGKEIVKCLG------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 84 --~~~~~~~~~~~~~~~------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
...+.. .+...... ....+.+..+ -.....+|+|+++++.++++++.+| +++| |++.+|....
T Consensus 153 ~~~~~~~~-~~~~~~~~l~~~i~~lp~gl~t~~--~~~g~~LSGGqrQRvaiARAL~~~p---~iLlLDEPts~LD~~~~ 226 (306)
T 3nh6_A 153 VTAGNDEV-EAAAQAAGIHDAIMAFPEGYRTQV--GERGLKLSGGEKQRVAIARTILKAP---GIILLDEATSALDTSNE 226 (306)
T ss_dssp TTCCHHHH-HHHHHHHTCHHHHHHSTTGGGCEE--STTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSSCCCHHHH
T ss_pred ccCCHHHH-HHHHHHhCcHHHHHhccchhhhHh--cCCcCCCCHHHHHHHHHHHHHHhCC---CEEEEECCcccCCHHHH
Confidence 111111 11111111 0111223222 2223579999999999999999888 4666 8899998776
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+.+.+.... +|.+..+.. |+.++++.+|.+...
T Consensus 227 --~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 227 --RAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER 269 (306)
T ss_dssp --HHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE
T ss_pred --HHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE
Confidence 77776665532 788888765 999999988876543
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.31 E-value=8.9e-12 Score=101.21 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=63.0
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~ 146 (228)
.+..+.++||||+.+.. .. . ...+|.+++++++...- ..+.+.. ... . .|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~---~----~~~aD~vl~Vvd~~~~~---~~~~l~~--~~~--~--~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TE---V----ARMVDCFISLQIAGGGD---DLQGIKK--GLM--E--VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HH---H----HTTCSEEEEEECC---------CCCCH--HHH--H--HCSEEEECC
T ss_pred cCCCEEEEeCCCccchH-------HH---H----HHhCCEEEEEEeCCccH---HHHHHHH--hhh--c--ccCEEEEEC
Confidence 45679999999987520 11 1 25779999999986221 1111110 001 1 268899999
Q ss_pred CCCCccchhhHHHHhhccCCchHHHHHHhcCC---eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
+|.... ..+...+.. +++....... .+. ...++.||.++.++++|++.|.+.+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~--~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQ--PRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBC--CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCC--CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 998754 444433333 3333333221 000 12245678888999999999988765
No 214
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.30 E-value=4.7e-13 Score=105.23 Aligned_cols=161 Identities=18% Similarity=0.114 Sum_probs=94.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG- 90 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~- 90 (228)
.-+++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.|.++.. +..+++.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~ 115 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY 115 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC----EEEECCEEcccCCHHHHhccEEEEecCCccccc-cHHHHHhh
Confidence 3456789999999999999999999998775544 22211110000 0001112344555554431 1111110
Q ss_pred --------HHHH---------HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 91 --------KEIV---------KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 91 --------~~~~---------~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
.++. ..+.....+.+.. .-.....+|+|+++++.++++++.+|. ++| |++.+|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~--~~~~~~~LSgGq~QRv~lAraL~~~p~---lllLDEPts~LD~~ 190 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE--VGETGNQLSGGQRQAVALARALIRKPR---LLILDNATSALDAG 190 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB--CCGGGTTSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHH
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh--hcCCcCCCCHHHHHHHHHHHHHhcCCC---EEEEECCccCCCHH
Confidence 0000 0010000011111 111125799999999999999998884 555 88999988
Q ss_pred ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+.... +|++..+. .|+..+++.++.+.
T Consensus 191 ~~--~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 191 NQ--LRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVC 235 (271)
T ss_dssp HH--HHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEE
T ss_pred HH--HHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 77 78887776542 68888765 58888888887654
No 215
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.29 E-value=6.5e-11 Score=104.54 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=76.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc-c-ccc-CC-------------CCCcceeeEeEeeeeeCC-------cEEE
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA-F-KAS-AG-------------SSGVTKTCEMKTTVLKDG-------QVVN 72 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~-~-~~~-~~-------------~~~~t~~~~~~~~~~~~~-------~~~~ 72 (228)
....++|+|+|+.|+|||||++.|+.... . ..+ .. ...+|......... +.+ ..+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEE
Confidence 34557999999999999999999964210 0 000 00 12234333322222 333 6799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 73 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+|||||..+.. .+...++. .+|++++++|+..+.+......+..+... . .|+++++||+|....
T Consensus 86 liDTPG~~df~-------~~~~~~l~----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IEVERSMR----VLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HHHHHHHH----HCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence 99999966421 33333333 55999999999977777666655554332 2 278999999998754
No 216
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.29 E-value=2e-14 Score=112.27 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+|. ++| |++.+|.... ..+.+.+++.. +|++..+...|+..+++
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPK---MIVMDEPIAGVAPGLA--HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4799999999999999998884 666 8899998877 77777766542 78888888899999888
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 227 ~~G~i~ 232 (257)
T 1g6h_A 227 FNGQII 232 (257)
T ss_dssp ETTEEE
T ss_pred ECCEEE
Confidence 888764
No 217
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=7.3e-14 Score=121.02 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------c---------------CCCCCcceeeEeEeeeee
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLK 66 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~ 66 (228)
.++..+|+|+|+.++|||||+|.|++...... + ....++|.+....... .
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-S 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-e
Confidence 34557899999999999999999964311000 0 0011233333332222 3
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCcccccc
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDY 139 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--s~~~~~~l~~~~~~~~~~~~~~ 139 (228)
.+..+.++||||..+.. ..+......+|++|+|++++.+ + .......+.++..+ +.+ +
T Consensus 253 ~~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip---~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GIS---E 317 (592)
T ss_dssp ------CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCC---C
T ss_pred CCeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---e
Confidence 45678999999965431 1112233467999999999743 3 44555555555432 333 5
Q ss_pred EEEEEeCCCCCccchhhHHHHhhccCCchHHHHH-HhcCC---eEEEeeCCCcccccchHHHH--------------HHH
Q 027090 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN---RCVLFDNKTKDEAKGTEQVR--------------QLL 201 (228)
Q Consensus 140 ~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~--------------~l~ 201 (228)
+++++||+|+.......+....+. +.++. ..... .+ ..++.||.++.++. +|+
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~----~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Ll 388 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNV----HFVPISAISGTNLIQKDSSDLYKWYKGPTLL 388 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGE----EEEEECSSSCSSSCSCCCCGGGGTCCSCCHH
T ss_pred EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccce----EEEEEecccCcccccccccccccccchHHHH
Confidence 889999999875211344443343 44443 22221 11 11334566666665 688
Q ss_pred HHHHHHHH
Q 027090 202 SLVNSVIV 209 (228)
Q Consensus 202 ~~i~~~~~ 209 (228)
+.|..+++
T Consensus 389 e~l~~~~p 396 (592)
T 3mca_A 389 SALDQLVP 396 (592)
T ss_dssp HHHHTSCC
T ss_pred HHHHhhcc
Confidence 88776654
No 218
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.28 E-value=9.4e-14 Score=109.00 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFV----- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~----- 89 (228)
-.++..++|+|+||||||||+++|+|...+.+|. +..................+.+.| ......+..+++
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD----VLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE----EEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 4566799999999999999999999987755542 211111000000111122333433 111111111110
Q ss_pred --------HHHHHHHHhhccCCcc--EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 90 --------GKEIVKCLGMAKDGIH--AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 90 --------~~~~~~~~~~~~~~~~--~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.+.+...+... +.+ .. .-.....+|+|+++++.++++++.+|. ++| |++.+|.... ..
T Consensus 106 ~~~~~~~~~~~~~~~l~~~--gl~~~~~--~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~ 176 (266)
T 2yz2_A 106 NFYPDRDPVPLVKKAMEFV--GLDFDSF--KDRVPFFLSGGEKRRVAIASVIVHEPD---ILILDEPLVGLDREGK--TD 176 (266)
T ss_dssp TTCTTSCSHHHHHHHHHHT--TCCHHHH--TTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHHHH--HH
T ss_pred hcCCHHHHHHHHHHHHHHc--CcCCccc--ccCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCccccCCHHHH--HH
Confidence 01111111111 000 00 001114799999999999999998884 665 8899998877 77
Q ss_pred HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+.+.. +|++..+...|+..+++.++.+.
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 777665532 78888888889998888887654
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.28 E-value=3.9e-11 Score=99.27 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC--cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 97 (228)
..++|+|+||||||||+|+|+|...+..|..... .++...... .......+.++|+||+...... ..++...+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~ 144 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM 144 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-cccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence 4899999999999999999999876555522111 111111111 1111235789999998643211 13333333
Q ss_pred hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC------------ccchhhHHHHhhccC
Q 027090 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL------------EDHEKTLEDFLGHEC 165 (228)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~------------~~~~~~~~~~~~~~~ 165 (228)
... ..+..+. ++.+ + ++++.+.++.++.... +|+++|.|+.|.. .. .++.+.++.
T Consensus 145 ~L~--~~~~~~~-lS~G-~---~~kqrv~la~aL~~~~--~p~~lV~tkpdlllLDEPtsgLD~~~~--~~l~~~l~~-- 211 (413)
T 1tq4_A 145 KFY--EYDFFII-ISAT-R---FKKNDIDIAKAISMMK--KEFYFVRTKVDSDITNEADGEPQTFDK--EKVLQDIRL-- 211 (413)
T ss_dssp TGG--GCSEEEE-EESS-C---CCHHHHHHHHHHHHTT--CEEEEEECCHHHHHHHHHTTCCTTCCH--HHHHHHHHH--
T ss_pred CCC--ccCCeEE-eCCC-C---ccHHHHHHHHHHHhcC--CCeEEEEecCcccccCcccccCCHHHH--HHHHHHHHH--
Confidence 322 2344443 5543 2 3667777777776533 3788888877654 23 344444443
Q ss_pred CchHH-H-HHHh--cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090 166 PKPLK-E-ILQL--CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (228)
Q Consensus 166 ~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 211 (228)
+. + +.+. ....++++..+.. ...++++|.+.|.+.+++.
T Consensus 212 ---l~~~~l~~~g~~~~~iiliSsh~l----~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 212 ---NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp ---HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGG
T ss_pred ---HHHHHHHhcCCCCCcEEEEecCcC----CccCHHHHHHHHHHhCccc
Confidence 11 0 0111 1223444444332 2257899999998888774
No 220
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.27 E-value=2.4e-11 Score=98.49 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=84.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCc----------------ceeeEeEee----------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGV----------------TKTCEMKTT---------- 63 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~----------------t~~~~~~~~---------- 63 (228)
..++..++|+|+||||||||+|+|+|...+..+ ...... .........
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 356789999999999999999999853221111 000000 000000000
Q ss_pred -----------eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH-HHHHHH
Q 027090 64 -----------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNL 131 (228)
Q Consensus 64 -----------~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l-~~~~~~ 131 (228)
....+..+.++||||+.... ..+ ...+|.+++++++... .+.+.+ ..+..
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-------~~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~- 193 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE-------TAV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE- 193 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-------HHH-------HTTSSEEEEEECSCC---------CCTTHHH-
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch-------hhH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-
Confidence 01245678999999987531 111 1467999999987521 111111 00111
Q ss_pred hCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhcCCeEE-EeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 132 FGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 132 ~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.+.++++||+|.... ... ....+. +............ .....+..|+.++.++++|.+.|.+...
T Consensus 194 ------~~~ivvlNK~Dl~~~--~~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 ------LADMIAVNKADDGDG--ERRASAAASE-----YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------HCSEEEEECCSTTCC--HHHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------cccEEEEEchhccCc--hhHHHHHHHH-----HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 146777899997543 222 122222 2222222220000 0011123577788899999999988776
No 221
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.27 E-value=4.8e-12 Score=97.09 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=90.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHH-------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV------- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~------- 89 (228)
+++..++|+|+||||||||+++|+|...+.+| .+.. ++....+.+.|.++.. +..+++
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~----------~g~i~~v~q~~~~~~~-tv~enl~~~~~~~ 96 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----KIKH----------SGRISFCSQFSWIMPG-TIKENIIFGVSYD 96 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEE----------CSCEEEECSSCCCCSB-CHHHHHHTTSCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc----EEEE----------CCEEEEEecCCcccCC-CHHHHhhccCCcC
Confidence 46679999999999999999999998764444 2221 1122334444544332 111111
Q ss_pred ---HHHHHHHHhhc--cCC-ccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 90 ---GKEIVKCLGMA--KDG-IHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 90 ---~~~~~~~~~~~--~~~-~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
..+........ ... .+..- .+-+....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.+
T Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lllLDEPts~LD~~~~--~~i~~ 171 (229)
T 2pze_A 97 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD---LYLLDSPFGYLDVLTE--KEIFE 171 (229)
T ss_dssp HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS---EEEEESTTTTSCHHHH--HHHHH
T ss_pred hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC---EEEEECcccCCCHHHH--HHHHH
Confidence 01111111000 000 00000 0001124899999999999999998884 555 8899998877 77777
Q ss_pred H-hhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 160 F-LGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 160 ~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
. +.... +|++..+. .|+..+++.++.+.
T Consensus 172 ~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 172 SCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY 208 (229)
T ss_dssp HCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE
T ss_pred HHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE
Confidence 5 33322 78887764 58888888887654
No 222
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.26 E-value=2.1e-13 Score=106.67 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEE-EEEeCCCCCCCCCCcHHHH-------
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV-NVIDTPGLFDLSAGSEFVG------- 90 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~iDtpG~~~~~~~~~~~~------- 90 (228)
+.+++|+|+||||||||+++|+|.. +.+|. +................. .+.+.|.+ ..+..+++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~----I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~ 102 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGN----IFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG 102 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE----EEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE----EEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc
Confidence 6799999999999999999999987 76652 111110000000111122 34455555 222222210
Q ss_pred ---HHHHHHHhhccCCcc-EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090 91 ---KEIVKCLGMAKDGIH-AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 91 ---~~~~~~~~~~~~~~~-~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~ 163 (228)
+.+...+... +.+ .. .-.....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.+.+.+
T Consensus 103 ~~~~~~~~~l~~~--gl~~~~--~~~~~~~LSgGqkqRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~L~~ 173 (263)
T 2pjz_A 103 LDRDLFLEMLKAL--KLGEEI--LRRKLYKLSAGQSVLVRTSLALASQPE---IVGLDEPFENVDAARR--HVISRYIKE 173 (263)
T ss_dssp CCHHHHHHHHHHT--TCCGGG--GGSBGGGSCHHHHHHHHHHHHHHTCCS---EEEEECTTTTCCHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHc--CCChhH--hcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCccccCHHHH--HHHHHHHHH
Confidence 0011111111 110 00 001114799999999999999998884 555 8899999877 888888877
Q ss_pred cC------CchHHHHHHhcC-CeEEEeeCCCc
Q 027090 164 EC------PKPLKEILQLCD-NRCVLFDNKTK 188 (228)
Q Consensus 164 ~~------~~~~~~~~~~~~-~~~~~~~~~~~ 188 (228)
.. +|++..+...|+ ..+++.++.+.
T Consensus 174 ~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 174 YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp SCSEEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred hcCcEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 64 788888888899 88888777654
No 223
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.24 E-value=5.9e-13 Score=103.29 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=93.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSE----- 87 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~----- 87 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+......... .........+.+.|.++.. +..+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~ 106 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG----QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLA 106 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHHhcEEEEeCCCccccc-cHHHHHhcc
Confidence 346679999999999999999999999775544 22211110000 0000112344455554321 1111
Q ss_pred ------HHHHHHHHHHhhc---cC---CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 88 ------FVGKEIVKCLGMA---KD---GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 88 ------~~~~~~~~~~~~~---~~---~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
....+........ .. +.+.. +-.....+|+|+++++.++++++.+|. +++ |++.+|....
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qRv~iAraL~~~p~---lllLDEPts~LD~~~~ 181 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPK---ILIFDEATSALDYESE 181 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCB--CSTTTTCCCHHHHHHHHHHHHHTTCCS---EEEECCCCSCCCHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhh--hhCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH
Confidence 1001111111100 00 11110 111124799999999999999998884 666 9999998877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.+.. +|.+..+. .|+..+++.++.+.
T Consensus 182 --~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 182 --HVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV 222 (247)
T ss_dssp --HHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE
T ss_pred --HHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 77777776542 78877664 58888888887654
No 224
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.24 E-value=3e-11 Score=102.04 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc-cc-------------cc---------------CCCCCcceeeEeEeeeeeC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FK-------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (228)
++..+|+++|+.++|||||++.|+.... +. .| ......|+........ .+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence 4457899999999999999999964210 00 00 0012334443332222 35
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCccccccE
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFDYM 140 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s-------~~~~~~l~~~~~~~~~~~~~~~ 140 (228)
+..+.++||||..+ +...+......+|++++|+|++++.. ...+..+.++.. .+-+ ++
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp---~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SE
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCC---EE
Confidence 67799999999543 22333344567899999999985421 223343433332 2222 48
Q ss_pred EEEEeCCCCCc
Q 027090 141 IVVFTGGDDLE 151 (228)
Q Consensus 141 llv~~~~D~~~ 151 (228)
++++||+|...
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999854
No 225
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.23 E-value=3.5e-12 Score=96.72 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------ 90 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~------ 90 (228)
+++..++|+|+||||||||+++|+|...+.+| .+........ . .......+.+.|.++...+..+++.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~-~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 106 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG----EIIYNGVPIT-K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLY 106 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEEGG-G-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEhh-h-hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999998765544 2221111100 0 1122334556666544322222210
Q ss_pred ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090 91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL 161 (228)
Q Consensus 91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~ 161 (228)
+.+...+... +.+. + -.....+|+|+++++.++++++.+| ++++ |++.+|.... ..+.+.+
T Consensus 107 ~~~~~~~~~~~~l~~~--gl~~--~-~~~~~~LSgGqkqrv~laraL~~~p---~lllLDEPts~LD~~~~--~~l~~~l 176 (214)
T 1sgw_A 107 GVKVNKNEIMDALESV--EVLD--L-KKKLGELSQGTIRRVQLASTLLVNA---EIYVLDDPVVAIDEDSK--HKVLKSI 176 (214)
T ss_dssp TCCCCHHHHHHHHHHT--TCCC--T-TSBGGGSCHHHHHHHHHHHHTTSCC---SEEEEESTTTTSCTTTH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHc--CCCc--C-CCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCCcCCCHHHH--HHHHHHH
Confidence 0111111111 1110 0 1112479999999999999999888 4666 8899999877 7887777
Q ss_pred hc
Q 027090 162 GH 163 (228)
Q Consensus 162 ~~ 163 (228)
.+
T Consensus 177 ~~ 178 (214)
T 1sgw_A 177 LE 178 (214)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 226
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.23 E-value=3e-12 Score=100.08 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-+++..++|+|+||||||||+++|+|...+ +| .+......... .........+.+.|.++.. +..+++
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G----~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~ 116 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG----DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYG 116 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE----EEEETTEEGGGBCHHHHHTTEEEECSSCCCCSE-EHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce----EEEECCEEhhhcCHHHHhccEEEEcCCCccccc-CHHHHHhcc
Confidence 456789999999999999999999998642 33 22211110000 0001122345555554421 111100
Q ss_pred -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+++...+... ....+.. +-.....+|+|+++++.++++++.+| +++| |++.+|....
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~--~~~~~~~LSgGqkqRv~lAraL~~~p---~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTI--VGNKGMKLSGGERQRIAIARCLLKDP---KIVIFDEATSSLDSKTE 191 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCE--ESSSSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCCCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhcccccccc--ccCCcCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHHH
Confidence 01111111100 0011111 11122479999999999999999888 4666 9999998877
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
..+.+.+.... +|++..+ ..|+..+++.++.+.
T Consensus 192 --~~i~~~l~~l~~~~tviivtH~~~~~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 192 --YLFQKAVEDLRKNRTLIIIAHRLSTI-SSAESIILLNKGKIV 232 (260)
T ss_dssp --HHHHHHHHHHTTTSEEEEECSSGGGS-TTCSEEEEEETTEEE
T ss_pred --HHHHHHHHHhcCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE
Confidence 77777776543 7887765 458888888887654
No 227
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.22 E-value=2.2e-13 Score=105.94 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=50.8
Q ss_pred CC-CCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeE
Q 027090 115 NR-FSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRC 180 (228)
Q Consensus 115 ~~-~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~ 180 (228)
.. +|+|+++++.++++++.+|. ++| |++.+|.... ..+.+.+++.. +|++..+... |+..+
T Consensus 141 ~~~LSgGqkQrv~iAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 141 NEGFSGGEKKRNEILQLLVLEPT---YAVLDETDSGLDIDAL--KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp TCC----HHHHHHHHHHHHHCCS---EEEEECGGGTTCHHHH--HHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred ccCCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcCCCHHHH--HHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence 35 99999999999999998884 665 8899998877 77777776542 7888877766 47778
Q ss_pred EEeeCCCc
Q 027090 181 VLFDNKTK 188 (228)
Q Consensus 181 ~~~~~~~~ 188 (228)
++.++.+.
T Consensus 216 ~l~~G~i~ 223 (250)
T 2d2e_A 216 VMMDGRVV 223 (250)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 88777654
No 228
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.22 E-value=5.6e-11 Score=103.11 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=97.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF---- 88 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~---- 88 (228)
-+++..++|+|+||||||||++.|+|...+.+| .+..+...... .........+.+.|.++.. +..++
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~ 440 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG----SICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYA 440 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC----EEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhcc
Confidence 356789999999999999999999998775544 22222211100 0011112234444443321 10000
Q ss_pred -----HHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090 89 -----VGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE 151 (228)
Q Consensus 89 -----~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~ 151 (228)
..+++...+... ..+.+.. +-+....+|+|++|++.++++++.+| ++++ |++.+|...
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~--~~~~~~~LSgGq~qr~~iAral~~~p---~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTV--IGENGTSLSGGQRQRVAIARALLRDA---PVLILDEATSALDTES 515 (582)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHhCcccccch--hcCCCCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHH
Confidence 011222222111 0112211 11223579999999999999999888 4666 999999887
Q ss_pred cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
. ..+.+.+++.. +|.+..+. .|++++++.+|++..
T Consensus 516 ~--~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 516 E--RAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE 558 (582)
T ss_pred H--HHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE
Confidence 7 77777776542 78887764 799999998887653
No 229
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.22 E-value=6e-13 Score=104.43 Aligned_cols=68 Identities=16% Similarity=0.029 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeEEE
Q 027090 116 RFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRCVL 182 (228)
Q Consensus 116 ~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~ 182 (228)
.+|+|+++++.++++++.+|. ++| |++.+|.... ..+.+.++++. +|++..+... |+..+++
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~---lLlLDEPts~LD~~~~--~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPE---LCILDESDSGLDIDAL--KVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCS---EEEEESTTTTCCHHHH--HHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 499999999999999998884 555 8899998877 88888887653 7888777665 7888888
Q ss_pred eeCCCc
Q 027090 183 FDNKTK 188 (228)
Q Consensus 183 ~~~~~~ 188 (228)
.++.+.
T Consensus 239 ~~G~i~ 244 (267)
T 2zu0_C 239 YQGRIV 244 (267)
T ss_dssp ETTEEE
T ss_pred ECCEEE
Confidence 777654
No 230
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.20 E-value=2.3e-11 Score=96.41 Aligned_cols=152 Identities=12% Similarity=0.121 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG----- 90 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~----- 90 (228)
-+++..++|+|+||||||||+++|+|...+.+|. +.. ++...++.+.|.++.. +..+.+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~----I~~----------~g~i~~v~Q~~~l~~~-tv~enl~~~~~~ 125 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK----IKH----------SGRISFCSQNSWIMPG-TIKENIIGVSYD 125 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE----EEC----------CSCEEEECSSCCCCSS-BHHHHHHTTCCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE----EEE----------CCEEEEEeCCCccCcc-cHHHHhhCcccc
Confidence 3467899999999999999999999987655441 111 1122234444444331 1111110
Q ss_pred ----HHHHHHHhhc---cCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090 91 ----KEIVKCLGMA---KDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED 159 (228)
Q Consensus 91 ----~~~~~~~~~~---~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~ 159 (228)
.+........ ....+.. -.+-+....+|+|+++++.++++++.+|. +++ |++.+|.... ..+.+
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~i~~ 200 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD---LYLLDSPFGYLDVLTE--KEIFE 200 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHH
T ss_pred hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC---EEEEECCcccCCHHHH--HHHHH
Confidence 1111110000 0000000 00001114799999999999999998884 555 8899998877 77777
Q ss_pred Hh-hccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 160 FL-GHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 160 ~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.+ .... +|++..+ ..|+..+++.++.+.
T Consensus 201 ~ll~~~~~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 201 SCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HCCCCCTTTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHhhCCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 53 3321 7888776 469988888888764
No 231
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.19 E-value=4.3e-12 Score=97.88 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC----------CCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL----------SAG 85 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~----------~~~ 85 (228)
-+++..++|+|+||||||||+++|+|...+.+|. +... +....+.+.|.+... ...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~~~----------g~i~~v~Q~~~~~~~tv~enl~~~~~~~ 93 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH----VAIK----------GSVAYVPQQAWIQNDSLRENILFGCQLE 93 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE----EEEC----------SCEEEECSSCCCCSEEHHHHHHTTSCCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce----EEEC----------CEEEEEcCCCcCCCcCHHHHhhCccccC
Confidence 3567799999999999999999999987655441 1111 111222232322110 000
Q ss_pred cHHHHHHHHHHHhhc--c---C-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090 86 SEFVGKEIVKCLGMA--K---D-GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT 156 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~--~---~-~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~ 156 (228)
.+. .++........ . + +.+. .+-+....+|+|+++++.++++++.+|. ++| |++.+|.... ..
T Consensus 94 ~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~LSgGqkqRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~ 165 (237)
T 2cbz_A 94 EPY-YRSVIQACALLPDLEILPSGDRT--EIGEKGVNLSGGQKQRVSLARAVYSNAD---IYLFDDPLSAVDAHVG--KH 165 (237)
T ss_dssp TTH-HHHHHHHTTCHHHHTTSTTGGGS--EESTTSBCCCHHHHHHHHHHHHHHHCCS---EEEEESTTTTSCHHHH--HH
T ss_pred HHH-HHHHHHHHhhHHHHHhccccccc--cccCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCcccccCHHHH--HH
Confidence 111 11222211100 0 0 0000 1112225899999999999999998883 555 8899998877 77
Q ss_pred HHHHhh---ccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 157 LEDFLG---HEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 157 ~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
+.+.+. ... +|++..+ ..|+..+++.++.+.
T Consensus 166 i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 166 IFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKIS 207 (237)
T ss_dssp HHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEEE
T ss_pred HHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEEE
Confidence 877773 211 6777765 568888888887654
No 232
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.18 E-value=1.1e-10 Score=105.05 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCccccc-------C-------CCCCcceeeEeEeeeee---------------CC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------A-------GSSGVTKTCEMKTTVLK---------------DG 68 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-------~-------~~~~~t~~~~~~~~~~~---------------~~ 68 (228)
..++|+|+|+.|+|||||+++|++....... . ....+|+.......... .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4478999999999999999999864210000 0 01122322221111111 14
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D 148 (228)
..+.++||||..+.. .+...++. .+|++++|+|+.++.+..+...+..+... . .|+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HHHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence 568999999987643 33444443 56999999999988888877655544321 2 27899999999
Q ss_pred CC
Q 027090 149 DL 150 (228)
Q Consensus 149 ~~ 150 (228)
..
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 76
No 233
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.16 E-value=6e-12 Score=109.18 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC----------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL---------- 82 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~---------- 82 (228)
-+++..++|+|+||||||||+++|+|...+.+| .+..+..... ..........+.+.|.++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G----~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~ 441 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG----RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE----EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc----EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC
Confidence 356789999999999999999999998775544 2221110000 00001112334444444321
Q ss_pred -CCCcHHHHHHHHHHHh---------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090 83 -SAGSEFVGKEIVKCLG---------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD 149 (228)
Q Consensus 83 -~~~~~~~~~~~~~~~~---------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~ 149 (228)
....+ ++..... ....+.+.. +-+....+|+|++|++.++++++.+| ++++ |++.+|.
T Consensus 442 ~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~--~~~~~~~LSgGqrQrv~lARal~~~p---~illlDEpts~LD~ 512 (587)
T 3qf4_A 442 EDATDD----EIVEAAKIAQIHDFIISLPEGYDSR--VERGGRNFSGGQKQRLSIARALVKKP---KVLILDDCTSSVDP 512 (587)
T ss_dssp SSCCHH----HHHHHHHHTTCHHHHHTSSSGGGCE--ECSSSCSSCHHHHHHHHHHHHHHTCC---SEEEEESCCTTSCH
T ss_pred CCCCHH----HHHHHHHHhCcHHHHHhcccchhhH--hcCCCCCcCHHHHHHHHHHHHHHcCC---CEEEEECCcccCCH
Confidence 11111 1212111 111133322 22333589999999999999999988 4666 8899998
Q ss_pred CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
... ..+.+.+++.. +|.+..+ ..|++++++.+|++...
T Consensus 513 ~~~--~~i~~~l~~~~~~~tvi~itH~l~~~-~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 513 ITE--KRILDGLKRYTKGCTTFIITQKIPTA-LLADKILVLHEGKVAGF 558 (587)
T ss_dssp HHH--HHHHHHHHHHSTTCEEEEEESCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHH--HHHHHHHHHhCCCCEEEEEecChHHH-HhCCEEEEEECCEEEEE
Confidence 876 77777666543 7888776 58999999988876543
No 234
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.15 E-value=4.5e-13 Score=105.72 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc-----------CCchHHHHHHhcCCeE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-----------CPKPLKEILQLCDNRC 180 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 180 (228)
..+|+|+++++.++++++.+|. ++| |++.+|.... ..+.+.+.++ -+|++..+...|+..+
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~---lLlLDEPts~LD~~~~--~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQ---VLILDEPAAGLDFIAR--ESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE
T ss_pred hhCCHHHHHHHHHHHHHhCCCC---EEEEeCCccccCHHHH--HHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE
Confidence 4799999999999999998884 665 8899998876 7766665442 1466777777888888
Q ss_pred EEeeCCCc
Q 027090 181 VLFDNKTK 188 (228)
Q Consensus 181 ~~~~~~~~ 188 (228)
++.++.+.
T Consensus 235 ~l~~G~i~ 242 (279)
T 2ihy_A 235 LLKDGQSI 242 (279)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 88887654
No 235
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.14 E-value=9.7e-11 Score=102.47 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh---CCCcccccCCC-------------CCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~---g~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 82 (228)
-++|+|+|+.++|||||..+|+ |.......... +.+|+....... .+++..+.++||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF-QWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCC-BCSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEE-EECCEEEEEEECCCcHHH
Confidence 3689999999999999999884 32211100111 123444333333 356778999999998775
Q ss_pred CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
. .+..+.+.. +|.+++|+|+.++....+...++.+... .. |.++++||+|....
T Consensus 81 ~-------~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~~---~l--p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 L-------AEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRKM---GI--PTIFFINKIDQNGI 134 (638)
T ss_dssp H-------HHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHHH---TC--SCEECCEECCSSSC
T ss_pred H-------HHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHHc---CC--CeEEEEeccccccC
Confidence 2 566666554 4999999999988888888887777665 22 57888999997654
No 236
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.13 E-value=2.2e-10 Score=89.35 Aligned_cols=130 Identities=12% Similarity=-0.059 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCC
Q 027090 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGG 147 (228)
Q Consensus 69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~ 147 (228)
..+.++||||..+.. ....+...+...... +++++++|+....+..+.. .......... ....|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEecc
Confidence 368999999954310 000011111122245 8889999886444544432 1111111111 1123789999999
Q ss_pred CCCccchhhH---HHHhhccCCchHHHH-----------------HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090 148 DDLEDHEKTL---EDFLGHECPKPLKEI-----------------LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (228)
Q Consensus 148 D~~~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 207 (228)
|.... .++ ..+++.. ......+ .+.... ....+..|+.++.++++|++.|.+.
T Consensus 182 D~~~~--~~~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 182 DLLSE--EEKERHRKYFEDI-DYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLETLAYEH 254 (262)
T ss_dssp GGCCH--HHHHHHHHHHHCH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccc--ccHHHHHHHHhCh-HHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHHHHHHH
Confidence 98754 433 2222220 0000010 111111 0133556788899999999999998
Q ss_pred HHhcC
Q 027090 208 IVQNG 212 (228)
Q Consensus 208 ~~~~~ 212 (228)
++..+
T Consensus 255 ~~~~~ 259 (262)
T 1yrb_A 255 YCTCG 259 (262)
T ss_dssp HHHHC
T ss_pred hcccc
Confidence 87643
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.13 E-value=2.8e-12 Score=105.07 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCccc----ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 94 (228)
+.+++++|.+|+|||||+|+|++..... ...+..+.|+..... .. . ...+.++||||+.+.....+....+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~-~-~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IP-L-DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EE-S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EE-e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999999863211 111222223322211 11 1 223789999999876533322222222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (228)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~ 163 (228)
..+ .....++.++++++....+-.+...+++.+. ... .|+++++||.|.... .+++...+.
T Consensus 237 ~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~~ 297 (368)
T 3h2y_A 237 KLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADEL 297 (368)
T ss_dssp HHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHHH
T ss_pred HHh-ccccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHHH
Confidence 222 1235778888888874111111111112111 112 278999999999877 666554443
No 238
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.13 E-value=1e-10 Score=100.36 Aligned_cols=148 Identities=12% Similarity=-0.033 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~ 95 (228)
.++.+++|+|+||||||||+++|+|...+.+|.. ... ....++.+.+......+..+.. ... ..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i----~~~----------~~i~~v~Q~~~~~~~~tv~~~~-~~~~~~ 374 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI----EWD----------LTVAYKPQYIKADYEGTVYELL-SKIDAS 374 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC----CCC----------CCEEEECSSCCCCCSSBHHHHH-HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE----EEC----------ceEEEEecCCcCCCCCcHHHHH-Hhhhcc
Confidence 3578999999999999999999999887555532 210 0111222223221111111111 111 00
Q ss_pred ------HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc--
Q 027090 96 ------CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-- 164 (228)
Q Consensus 96 ------~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-- 164 (228)
...........--+.-.....+|+|+++++.+++++..+| +++| |++++|.... ..+.+.++++
T Consensus 375 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~i~~~l~~l~~ 449 (538)
T 1yqt_A 375 KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LAVSRAIRHLME 449 (538)
T ss_dssp HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HHHHHHHHHHHH
Confidence 0011111111100000111479999999999999998887 4665 8899999877 7777776643
Q ss_pred --C------CchHHHHHHhcCCeEEEee
Q 027090 165 --C------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 165 --~------~~~~~~~~~~~~~~~~~~~ 184 (228)
. +|++..+...|++.+++.+
T Consensus 450 ~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 450 KNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 1 8999999999999888875
No 239
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.12 E-value=1.2e-11 Score=101.62 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee--eeCCcEEEEEeCCCCCCC---------C
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV--LKDGQVVNVIDTPGLFDL---------S 83 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~iDtpG~~~~---------~ 83 (228)
-+++..++|+|+||||||||+++|+|... .+| .+........ .. ......-.+.+.|.++.. .
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G----~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~ 118 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG----EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA 118 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE----EEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe----EEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc
Confidence 45678999999999999999999999864 333 1111110000 00 000112234444443321 0
Q ss_pred CCcHHHHHHHHHHHhhc---c---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090 84 AGSEFVGKEIVKCLGMA---K---DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE 154 (228)
Q Consensus 84 ~~~~~~~~~~~~~~~~~---~---~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~ 154 (228)
........+....+... . ...+. .+.+....+|+|++|++.++++++.+|. ++| |++.+|....
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~~p~~l~~--~i~~~g~~LSGGqrQRvalARAL~~~P~---lLLLDEPts~LD~~~~-- 191 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDF--VLVDGGCVLSHGHKQLMCLARSVLSKAK---ILLLDEPSAHLDPVTY-- 191 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTTSTTGGGC--EECTTTTTSCHHHHHHHHHHHHHHTTCC---EEEEESHHHHSCHHHH--
T ss_pred ccCHHHHHHHHHHhCCHHHHhhccccccc--ccccccccCCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH--
Confidence 01111112222221110 0 11222 1122224599999999999999998884 555 8899998777
Q ss_pred hhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 155 KTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 155 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+...+++.. +|+.. .+..|++++++.+|++..
T Consensus 192 ~~l~~~l~~~~~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 192 QIIRRTLKQAFADCTVILCEARIE-AMLECDQFLVIEENKVRQ 233 (390)
T ss_dssp HHHHHHHHTTTTTSCEEEECSSSG-GGTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHH-HHHhCCEEEEEECCEEEE
Confidence 77877777643 67764 456699888888887654
No 240
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.11 E-value=3.7e-11 Score=104.27 Aligned_cols=148 Identities=11% Similarity=-0.047 Sum_probs=89.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VK 95 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~ 95 (228)
.++.+++|+|+||+|||||+++|+|...+.+|.. ... ....++.+.+......+..+.. ... ..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I----~~~----------~~i~~v~Q~~~~~~~~tv~e~~-~~~~~~ 444 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----EWD----------LTVAYKPQYIKAEYEGTVYELL-SKIDSS 444 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC----CCC----------CCEEEECSSCCCCCSSBHHHHH-HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EEe----------eEEEEEecCccCCCCCcHHHHH-Hhhhcc
Confidence 4577999999999999999999999877655532 210 0111222333221111111111 111 00
Q ss_pred H------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc--
Q 027090 96 C------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-- 164 (228)
Q Consensus 96 ~------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-- 164 (228)
. ..........--+.-..-..+|+|+++++.+++++..++. ++| |++++|.... ..+.+.++.+
T Consensus 445 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~---lLlLDEPt~~LD~~~~--~~l~~~l~~l~~ 519 (607)
T 3bk7_A 445 KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD---IYLLDEPSAYLDVEQR--LAVSRAIRHLME 519 (607)
T ss_dssp HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS---EEEEECTTTTCCHHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHH
Confidence 0 0000000000000000114799999999999999988873 555 8899998877 7777776653
Q ss_pred --C------CchHHHHHHhcCCeEEEee
Q 027090 165 --C------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 165 --~------~~~~~~~~~~~~~~~~~~~ 184 (228)
. +|++..+...|++.+++..
T Consensus 520 ~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 520 KNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 1 8999999999998888764
No 241
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.10 E-value=7.9e-10 Score=97.89 Aligned_cols=120 Identities=28% Similarity=0.294 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC---cc----ccc---------CCCCCcceeeEeEeeee------eCCcEEEEE
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK---AF----KAS---------AGSSGVTKTCEMKTTVL------KDGQVVNVI 74 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~---~~----~~~---------~~~~~~t~~~~~~~~~~------~~~~~~~~i 74 (228)
++-++|+|+|+.++|||||..+|+-.. .. ..+ ...+.+|+......... .++..+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456899999999999999999885211 00 000 11223444433333221 124579999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
||||..|.. .|..+++... |.+++|+|+.++....+...++.+... .. |.++++||+|....
T Consensus 91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 999988753 6777777666 999999999999999999888877654 33 68899999998654
No 242
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=2.1e-10 Score=94.31 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=58.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeeeeCC-----------------cEEEEEeCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG-----------------QVVNVIDTP 77 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~-----------------~~~~~iDtp 77 (228)
...+.+++|+|+||||||||+|+|+|... ....+.+.++ ........ ..+ ..+.++|+|
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecc
Confidence 34567999999999999999999999653 1222333322 22211111 221 347899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (228)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (228)
|+.......+.+...+...+ ..+|++++++++.
T Consensus 94 Gl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred ccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 98876554433323333333 3679999999985
No 243
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.10 E-value=5e-11 Score=102.12 Aligned_cols=66 Identities=15% Similarity=-0.019 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCV 181 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (228)
..+|+|++|++.+++++..+|. ++| |++.+|.... ..+.+.++++. +|++..+...|+++++
T Consensus 384 ~~LSGGq~QRv~iAraL~~~p~---lLlLDEPT~gLD~~~~--~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v 458 (538)
T 3ozx_A 384 NDLSGGELQKLYIAATLAKEAD---LYVLDQPSSYLDVEER--YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4799999999999999998884 666 8899998876 77776665431 8999999999999988
Q ss_pred EeeC
Q 027090 182 LFDN 185 (228)
Q Consensus 182 ~~~~ 185 (228)
+..+
T Consensus 459 l~~~ 462 (538)
T 3ozx_A 459 FKGE 462 (538)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8753
No 244
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.09 E-value=3.4e-12 Score=110.64 Aligned_cols=162 Identities=16% Similarity=0.119 Sum_probs=97.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-+++..++|+|+||||||||+++|.|...+.+| .+..+...... .........+.+.|.++... ..++.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t-v~eni~~~ 438 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG----QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT-VKENILLG 438 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE----EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSB-HHHHHGGG
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHhhheEEEeCCCccCccc-HHHHHhcC
Confidence 356789999999999999999999998775544 22221111000 00011223445556554321 11110
Q ss_pred -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+++.+..... ..+.+..+ -+....+|+|++|++.++++++.+| ++++ |++.+|....
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~--~~~g~~LSgGq~Qrv~lAral~~~p---~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEV--GERGVKLSGGQKQRLSIARIFLNNP---PILILDEATSALDLESE 513 (578)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC--CGGGTTSCHHHHHHHHHHHHHHHCC---SEEEEESTTTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhh--ccCCCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHHH
Confidence 11222222111 01222111 1222479999999999999999888 4666 7899998766
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+.+.++... +|.+..+ +.|++++++.+|++...
T Consensus 514 --~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 514 --SIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVET 556 (578)
T ss_dssp --HHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEE
T ss_pred --HHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence 67776665433 7888776 46998999988876543
No 245
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=2.6e-12 Score=105.32 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-----CcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~-----~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~ 92 (228)
+.+++++|.+|+|||||+|+|++. .....+ ..+ .|....... -...+.++||||+.+..........+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~--~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS--YFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE--ECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec--CCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHH
Confidence 468999999999999999999986 221111 222 232222221 12237899999998764322222122
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~ 159 (228)
....+ ....+++.++++++....+-.+...++..+. ... .|+++++||.|.... .+++.
T Consensus 236 ~l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~--~~~~~ 294 (369)
T 3ec1_A 236 DLKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR--TKLEK 294 (369)
T ss_dssp THHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEGGG
T ss_pred HHHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc--ccHHH
Confidence 22222 1235789999999884111111111122221 112 278899999999866 44443
No 246
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.09 E-value=3.1e-11 Score=104.96 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHH-----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEF----- 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~----- 88 (228)
+++..++|+|+||||||||++.|+|...+.+| .+..+..... ..........+.+.|.++.. +..++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 442 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASG----TISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGA 442 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE----EEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc----EEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcC
Confidence 56789999999999999999999998765544 2221111000 00000112334445544321 10000
Q ss_pred ------HHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 89 ------VGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 89 ------~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
..+++.+.+... ..+.+.. +-+....+|+|+++++.++++++.+| ++++ |++.+|..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~--~~~~~~~LSgGq~qrv~iAral~~~p---~illlDEpts~LD~~ 517 (595)
T 2yl4_A 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV--VGEKGVLLSGGQKQRIAIARALLKNP---KILLLDEATSALDAE 517 (595)
T ss_dssp SSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCB--CSSSSCCCCHHHHHHHHHHHHHHHCC---SEEEEECCCSSCCHH
T ss_pred CCccccCHHHHHHHHHHcCCHHHHHhCccccccc--ccCCCCcCCHHHHHHHHHHHHHHcCC---CEEEEECcccCCCHH
Confidence 011222222111 0112211 11122579999999999999999888 4666 88999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK 188 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
.. ..+.+.+.+.. +|.+..+ +.|++++++.+|++.
T Consensus 518 ~~--~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 518 NE--YLVQEALDRLMDGRTVLVIAHRLSTI-KNANMVAVLDQGKIT 560 (595)
T ss_dssp HH--HHHHHHHHHHHTTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HH--HHHHHHHHHHhcCCEEEEEecCHHHH-HcCCEEEEEECCEEE
Confidence 76 77777666532 7888776 469988888888654
No 247
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.07 E-value=5.7e-12 Score=109.62 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV--- 89 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~--- 89 (228)
-+++..++|+|+||||||||++.|+|...+.+| .+..+...... .........+.+.|.++.. +..++.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 452 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG----QILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYG 452 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE----EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe----EEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcC
Confidence 457789999999999999999999998775544 22221111000 0001112344455555432 111110
Q ss_pred -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+++....... ..+.+..+ -+....+|+|++|++.++++++.+| ++++ |++.+|....
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~--~~~g~~LSgGq~Qrv~iAral~~~p---~illlDEpts~LD~~~~ 527 (598)
T 3qf4_B 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVL--TDNGEDLSQGQRQLLAITRAFLANP---KILILDEATSNVDTKTE 527 (598)
T ss_dssp STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC--HHHHTTSCHHHHHHHHHHHHHHTCC---SEEEECCCCTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECCccCCCHHHH
Confidence 01111111110 00111111 0111479999999999999999988 4666 8899998766
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+.+.+.+.. +|.+..+. .|+.++++.+|++...
T Consensus 528 --~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 528 --KSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIVLRDGEIVEM 570 (598)
T ss_dssp --HHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEEECSSSEEEC
T ss_pred --HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence 67766665432 78888764 5999999988886543
No 248
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.05 E-value=1.5e-11 Score=106.66 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV---- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~---- 89 (228)
+++..++|+|+||||||||++.|+|...+.+| .+..+..... ..........+.+.|.++.. +..++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEG----HILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR 441 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE----EEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCC----eEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccC
Confidence 56789999999999999999999998765544 2221111000 00001112344455544331 111100
Q ss_pred -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
.+++...+... ..+.+.. +-+....+|+|++|++.++++++.+| ++++ |++.+|....
T Consensus 442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~--~~~~~~~LSgGq~qrl~iAral~~~p---~illlDEpts~LD~~~~ 516 (582)
T 3b60_A 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTI--IGENGVLLSGGQRQRIAIARALLRDS---PILILDEATSALDTESE 516 (582)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSB--CCTTSCSSCHHHHHHHHHHHHHHHCC---SEEEEETTTSSCCHHHH
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhcccccccc--ccCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEECccccCCHHHH
Confidence 01222222111 0112211 11222579999999999999999888 4666 8899998876
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
..+.+.+++.. +|.+..+ +.|++++++.+|++..
T Consensus 517 --~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 517 --RAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVE 558 (582)
T ss_dssp --HHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEE
T ss_pred --HHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEE
Confidence 77777665532 7887765 4688888888887653
No 249
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.04 E-value=4.4e-11 Score=112.22 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=103.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE---eeeeeCCcEEEEEeCCCCCCCCC---------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---TTVLKDGQVVNVIDTPGLFDLSA--------- 84 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~~~~--------- 84 (228)
+++.+|+|+|++|||||||+++|+|...+.+| .+..+.... .........-.+-+.|-+++..-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G----~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGG----EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS----EEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCCCC----EEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Confidence 57889999999999999999999998764444 333322111 00111122233444454332110
Q ss_pred CcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090 85 GSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED 152 (228)
Q Consensus 85 ~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~ 152 (228)
+.+...+++..+.+. ...+.|..+ -+.+..+|+|++|++.+++++++++ ++++ +.+.+|...+
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE 1253 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH
Confidence 001111233333321 123445432 2333579999999999999999988 4666 7789998876
Q ss_pred chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090 153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (228)
Q Consensus 153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (228)
..+.+.+++.. .|.+..+ ..|+.++++.+|++... ..-++|++
T Consensus 1254 --~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE~----Gth~eLl~ 1304 (1321)
T 4f4c_A 1254 --KVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTIIEK----GTHTQLMS 1304 (1321)
T ss_dssp --HHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSEEEE----ECHHHHHH
T ss_pred --HHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEEEEE----CCHHHHHh
Confidence 77777777643 5666543 57899999999987654 33456654
No 250
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=1.9e-10 Score=93.52 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeCC-----------------cEEEEEeCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDG-----------------QVVNVIDTPGLFD 81 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~-----------------~~~~~iDtpG~~~ 81 (228)
.+|+|+|.+|+|||||+|+|++.... ..+.+. |......... ..+ ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---v~~~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE---AANYPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 58999999999999999999987531 112221 2222111111 111 4689999999875
Q ss_pred CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (228)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (228)
.....+.+...+.. ..+.+|++++|+|+.+
T Consensus 79 ~a~~~~gl~~~fl~----~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 79 GASKGEGLGNKFLA----NIRETDAIGHVVRCFE 108 (363)
T ss_dssp THHHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred cccccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence 42111111111222 2346799999999973
No 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.03 E-value=2.4e-11 Score=104.05 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF 183 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 183 (228)
..+|+++++++.++.+++.+|. +++ |++.+|.... .++.+.++++. +|++..+...|+..+++.
T Consensus 137 ~~LSgGe~Qrv~iA~aL~~~p~---illlDEPts~LD~~~~--~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 137 NILSGGGLQRLLVAASLLREAD---VYIFDQPSSYLDVRER--MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEec
Confidence 4799999999999999998884 555 8899998876 77777776653 899999999999887776
Q ss_pred eC
Q 027090 184 DN 185 (228)
Q Consensus 184 ~~ 185 (228)
.+
T Consensus 212 ~~ 213 (538)
T 3ozx_A 212 GE 213 (538)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 252
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.03 E-value=2.6e-11 Score=104.00 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++.+++.+|. ++| |++.+|.... .++.++++++. +|++..+...|+.++++
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~---lLlLDEPTs~LD~~~~--~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNAT---FYFFDEPSSYLDIRQR--LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4799999999999999998884 555 8899998876 67776665542 89999999999998887
Q ss_pred eeC
Q 027090 183 FDN 185 (228)
Q Consensus 183 ~~~ 185 (228)
.++
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 654
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.03 E-value=3e-10 Score=93.23 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeC----------------CcEEEEEeCCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~----------------~~~~~~iDtpG~ 79 (228)
..+.+++|+|.+|+|||||+|+|++.... ..+.+. |............ ...+.++||||+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~---~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS---AENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 34578999999999999999999998541 122222 2222211111100 234899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (228)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (228)
.......+.+...+... .+.+|++++|+|+.
T Consensus 97 ~~~as~~~glg~~~l~~----ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSH----ISACDGIFHLTRAF 127 (396)
T ss_dssp ----------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred ccccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence 76443222111122222 34679999999986
No 254
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=7.9e-11 Score=102.10 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC-------------CC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS-------------AG 85 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~-------------~~ 85 (228)
+.+++|+|+||||||||+++|+|...+.+|...... ... .+.+.+...... ..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~--~i~------------~~~q~~~~~~~~tv~e~~~~~~~~~~~ 443 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL--NVS------------MKPQKIAPKFPGTVRQLFFKKIRGQFL 443 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSC--CEE------------EECSSCCCCCCSBHHHHHHHHCSSTTT
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCC--cEE------------EecccccccCCccHHHHHHHHhhcccc
Confidence 367999999999999999999999876665311000 000 011111100000 00
Q ss_pred cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG 162 (228)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~ 162 (228)
......++...+... ...+ .....+|+|++|++.+++++..+|. ++| |++.+|.... ..+.+.++
T Consensus 444 ~~~~~~~~l~~l~l~-~~~~------~~~~~LSGGqkQRv~iAraL~~~p~---lLlLDEPT~gLD~~~~--~~i~~ll~ 511 (608)
T 3j16_B 444 NPQFQTDVVKPLRID-DIID------QEVQHLSGGELQRVAIVLALGIPAD---IYLIDEPSAYLDSEQR--IICSKVIR 511 (608)
T ss_dssp SHHHHHHTHHHHTST-TTSS------SBSSSCCHHHHHHHHHHHHTTSCCS---EEEECCTTTTCCHHHH--HHHHHHHH
T ss_pred cHHHHHHHHHHcCCh-hhhc------CChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCCCCCCHHHH--HHHHHHHH
Confidence 111111222222111 0001 1115799999999999999988873 665 8899998766 66666665
Q ss_pred ccC----------CchHHHHHHhcCCeEEEee
Q 027090 163 HEC----------PKPLKEILQLCDNRCVLFD 184 (228)
Q Consensus 163 ~~~----------~~~~~~~~~~~~~~~~~~~ 184 (228)
++. +|++..+...|++.+++..
T Consensus 512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 512 RFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 431 8999999999998888765
No 255
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.9e-10 Score=97.79 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++.+++.+|. +++ |++.+|.... ..+.+.++++. +|++..+...|+..+++
T Consensus 220 ~~LSgGe~Qrv~iAraL~~~p~---llllDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 220 EKLSGGELQRFAIGMSCVQEAD---VYMFDEPSSYLDVKQR--LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHSCCS---EEEEECTTTTCCHHHH--HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHhCCC---EEEEECcccCCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5899999999999999998884 555 8899998876 77777776653 89999999999988888
Q ss_pred eeCC
Q 027090 183 FDNK 186 (228)
Q Consensus 183 ~~~~ 186 (228)
..+.
T Consensus 295 ~~~~ 298 (608)
T 3j16_B 295 YGVP 298 (608)
T ss_dssp ESCT
T ss_pred eCCc
Confidence 6543
No 256
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.99 E-value=4.4e-11 Score=103.81 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.+|. ++| |++.+|.... ..+.+.++++. +|++..+...|+.++++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~---lLlLDEPTs~LD~~~~--~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAH---FYFFDEPSSYLDIRQR--LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCS---EEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 4799999999999999998884 555 8899998876 67776666542 89999998899988877
Q ss_pred eeC
Q 027090 183 FDN 185 (228)
Q Consensus 183 ~~~ 185 (228)
..+
T Consensus 302 ~~~ 304 (607)
T 3bk7_A 302 YGE 304 (607)
T ss_dssp ESC
T ss_pred CCC
Confidence 654
No 257
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.99 E-value=1.9e-09 Score=93.89 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCccee-eE--------eEe----------------------------
Q 027090 21 TVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT-CE--------MKT---------------------------- 62 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~-~~--------~~~---------------------------- 62 (228)
.++|+|++|||||||+++|+|...+ .+|........- .. ...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4999999999999999999998755 344221111100 00 000
Q ss_pred --------------eeeeCCcEEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHHHHH
Q 027090 63 --------------TVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEETAV 125 (228)
Q Consensus 63 --------------~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~s~~~~~~l 125 (228)
........+.++|.||+..... .+....+.+...+... ......++.++..+..+. ....+
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l 204 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEAL 204 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHH
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHH
Confidence 0000123488999999876422 2333334455555443 233455666666543333 22344
Q ss_pred HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090 126 HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (228)
Q Consensus 126 ~~~~~~~~~~~~~~~llv~~~~D~~~~ 152 (228)
+++...-... .++++|+||.|....
T Consensus 205 ~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 205 SMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHhhcC--CceEEEecchhhcCc
Confidence 5555543222 269999999998755
No 258
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.94 E-value=2.5e-09 Score=92.14 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCC-CcHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSA-GSEFVGKE 92 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~-~~~~~~~~ 92 (228)
.+..+|+|+|++|+|||||+|.|+|.... ..+....+.|....... .....+..+.++||||+.+... ....- ..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~-~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND-SW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH-HH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH-HH
Confidence 44578999999999999999999998641 11111112222221111 1112456799999999987543 22211 12
Q ss_pred HHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090 93 IVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (228)
Q Consensus 93 ~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~ 131 (228)
++. ..... + ++++++...++..+...+.++...
T Consensus 115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHHH
Confidence 221 11111 2 345555567888888776665443
No 259
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.92 E-value=2.1e-09 Score=87.79 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeee--------------------eCCcEEEEEeCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVL--------------------KDGQVVNVIDTPG 78 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~--------------------~~~~~~~~iDtpG 78 (228)
.+|+|+|.+|+|||||+|+|++... .....+. |...+...... .....+.++||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~---~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA---LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT---TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 4799999999999999999998642 1122222 22211111110 1134689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (228)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (228)
+.......+.+...+...+ +.+|++++|+|+.+
T Consensus 79 l~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred ccccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 9765433222223333333 35699999999873
No 260
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.91 E-value=1.3e-10 Score=108.90 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---- 89 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---- 89 (228)
+++.+++|+|+||||||||+++|.|...+.+| .+..+...... .......-.+.+.|.+.... ..+++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G----~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t-i~eNi~~g~ 488 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG----MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT-IAENIRYGR 488 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE----EEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSC-HHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEHHhCCHHHHHhheEEEcCCCccCCcc-HHHHHhcCC
Confidence 56789999999999999999999998765444 22222111000 00011123455556554331 11111
Q ss_pred ----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090 90 ----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH 153 (228)
Q Consensus 90 ----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~ 153 (228)
.+++....... ..+.+..+ -.....+|+|+++++.++++++.+| ++++ |++.+|....
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~--~~~g~~LSgGq~QriaiARal~~~p---~iliLDEpts~LD~~~~- 562 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV--GERGAQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE- 562 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCC--SSSSCSSCHHHHHHHHHHHHHHHCC---SEEEEESTTCSSCHHHH-
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccc--cCCCCccCHHHHHHHHHHHHHhcCC---CEEEEECCCCCCCHHHH-
Confidence 01222211111 11222111 1122479999999999999999888 4666 7799998765
Q ss_pred hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
..+.+.++... +|.+..+. .|+.++++.+|++...
T Consensus 563 -~~i~~~l~~~~~~~t~i~itH~l~~i~-~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 563 -AVVQAALDKAREGRTTIVIAHRLSTVR-NADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSCHHHHT-TCSEEEECSSSCCCCE
T ss_pred -HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence 66666654322 78888774 5998888888887543
No 261
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=4.2e-09 Score=83.11 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~ 88 (228)
....+++++|.+|+|||||+|+|+|......+ ..+.++.... .. .-+..+.++||||+.......++
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~--~~~g~T~~~~-~~--~~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG--DRPGITTSQQ-WV--KVGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------C-CE--EETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC--CCCCeeeeeE-EE--EeCCCEEEEECcCcCCCCCCCHH
Confidence 34578999999999999999999998753332 2222322211 11 11346899999999877654443
No 262
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=2.7e-08 Score=84.27 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCC-Ccc--------e--eeEeEee--------------e-
Q 027090 17 NGERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-GVT--------K--TCEMKTT--------------V- 64 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~~-~~t--------~--~~~~~~~--------------~- 64 (228)
.+..+|+|+|++||||||+++.|+ |..+........ +.. . ....+.. .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 654311111000 000 0 0000000 0
Q ss_pred -eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc-EEE
Q 027090 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIV 142 (228)
Q Consensus 65 -~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-~ll 142 (228)
...+..+.+|||||.... ......++...... -.+|.+++|+++....+ .....+.+.. .. | ..+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~----~~--~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKD----KV--DVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHH----HH--CCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHh----hc--CceEE
Confidence 014567999999997753 22233343333221 16789999999975443 2222222221 11 5 478
Q ss_pred EEeCCCCCcc
Q 027090 143 VFTGGDDLED 152 (228)
Q Consensus 143 v~~~~D~~~~ 152 (228)
++||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998754
No 263
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.87 E-value=1.4e-10 Score=108.54 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC---------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS--------- 83 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~--------- 83 (228)
-+++.+++|+|+||||||||+++|+|...+.+|. ...+.... ...........+.+.|-+++..
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL----NVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS----CHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC----CHHHHHhceEEECCCCccccccHHHHHhccC
Confidence 4567899999999999999999999987765541 11111100 0000112223444445433211
Q ss_pred ----CCcHHHHHHHHHH------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 84 ----AGSEFVGKEIVKC------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 84 ----~~~~~~~~~~~~~------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
...++. .+..+. +.....+.|..+ -+....+|+|++|++.++++++.+|. +++ |++.+|..
T Consensus 1132 ~~~~~~~~~i-~~~~~~~~~~~~i~~l~~gldt~v--ge~G~~LSgGq~Qrv~iARal~~~p~---iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1132 NSRVVSYEEI-VRAAKEANIHQFIDSLPDKYNTRV--GDKGTQLSGGQKQRIAIARALVRQPH---ILLLDEATSALDTE 1205 (1284)
T ss_dssp SSCCCCHHHH-HHHHHHHTCHHHHSSTTTGGGCBC--STTSCSSCHHHHHHHHHHHHHHHCCS---SEEEESCSSSCCHH
T ss_pred CCCCCCHHHH-HHHHHHhCcHHHHHhCcccccccc--CCCCCccCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHH
Confidence 111111 111111 111111222211 12224799999999999999998883 555 88999988
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE 190 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
.. ..+.+.++... +|.+..+ ..|++++++.+|++...
T Consensus 1206 ~~--~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1206 SE--KVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HH--HHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEEEETBEEEEE
T ss_pred HH--HHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence 76 77777776533 7888876 56999999988876543
No 264
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=4.3e-10 Score=101.55 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.++++++.+|. ++| |++++|.... .++.++++... +|++..+...|++.+++.++
T Consensus 547 ~~LSGGqkQRvaLArAL~~~P~---lLLLDEPTs~LD~~~~--~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 547 SALSGGWKMKLALARAVLRNAD---ILLLDEPTNHLDTVNV--AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGL 621 (986)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCS---EEEEESTTTTCCHHHH--HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhcCCC---EEEEECCccCCCHHHH--HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 4799999999999999998884 555 8899999887 88888887632 89999999999999988887
Q ss_pred CC
Q 027090 186 KT 187 (228)
Q Consensus 186 ~~ 187 (228)
.+
T Consensus 622 ~i 623 (986)
T 2iw3_A 622 KL 623 (986)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 265
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.86 E-value=1.4e-09 Score=102.26 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC-----------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL----------- 82 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~----------- 82 (228)
+++..++|+|++|||||||++.|+|...+.+| .+..+..... ........-.+-+.|-+++.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G----~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG----KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE----EEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccC----cccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 57789999999999999999999998775544 2222111000 00000112233444433221
Q ss_pred CCCcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090 83 SAGSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL 150 (228)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~ 150 (228)
.... +++.++... ...+.+..+ -+.+..+|+|+++++.+++++..++ +++| +++.+|..
T Consensus 518 ~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~v--Ge~G~~LSGGQkQRiaiARAl~~~~---~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 518 GITR----EEMVAACKMANAEKFIKTLPNGYNTLV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDAE 588 (1321)
T ss_dssp TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEE--SSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEESTTTTSCTT
T ss_pred cchH----HHHHHHHHHccchhHHHcCCCCCccEe--cCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccccCCHH
Confidence 1122 233333221 112334332 2333579999999999999999888 4666 77999987
Q ss_pred ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090 151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD 189 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 189 (228)
.+ ..+.+.+.... +|.+.- ++.|+.++++.+|++..
T Consensus 589 te--~~i~~~l~~~~~~~T~iiiaHrls~-i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 589 SE--GIVQQALDKAAKGRTTIIIAHRLST-IRNADLIISCKNGQVVE 632 (1321)
T ss_dssp TH--HHHHHHHHHHHTTSEEEEECSCTTT-TTTCSEEEEEETTEEEE
T ss_pred HH--HHHHHHHHHHhCCCEEEEEcccHHH-HHhCCEEEEeeCCeeec
Confidence 65 66666665431 666654 46789899998887654
No 266
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.81 E-value=1.5e-09 Score=98.03 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN 185 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (228)
..+|+|+++++.+++++..+| +++| |++.+|.... ..+.+.++.+. +|++..+...|+..+++.+|
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P---~LLLLDEPT~gLD~~s~--~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRP---HLIVLDEPTNYLDRDSL--GALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCC---SEEEEECGGGTCCHHHH--HHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred cccCHHHHHHHHHHHHHHhCC---CEEEEECCccCCCHHHH--HHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 479999999999999998887 4665 8899998777 78888887754 89999998999998888888
Q ss_pred CCc
Q 027090 186 KTK 188 (228)
Q Consensus 186 ~~~ 188 (228)
.+.
T Consensus 975 ~Iv 977 (986)
T 2iw3_A 975 RMT 977 (986)
T ss_dssp BCC
T ss_pred EEE
Confidence 764
No 267
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.73 E-value=3e-08 Score=75.13 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..+|+|+|.+|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 268
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=8e-08 Score=77.30 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee---------------------EeEeee-----------
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---------------------EMKTTV----------- 64 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~---------------------~~~~~~----------- 64 (228)
+++..++|+|+|||||||+++.|.|...+..+ .+.... ......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g----~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF----SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC----EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 56789999999999999999999876433222 111000 000000
Q ss_pred -----eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc
Q 027090 65 -----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (228)
Q Consensus 65 -----~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~ 139 (228)
...+..+.++||+|...... ...+++....... .+|..++++|+..+ +..++.+..+.... ..
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~-----~~~~~~~~~~~~~~--~i 270 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG-----NAIVEQARQFNEAV--KI 270 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHHHHHHS--CC
T ss_pred HHHHHHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH-----HHHHHHHHHHHHhc--CC
Confidence 01123467899999764322 2223433322222 35778889997633 23344444432111 14
Q ss_pred EEEEEeCCCCCcc
Q 027090 140 MIVVFTGGDDLED 152 (228)
Q Consensus 140 ~llv~~~~D~~~~ 152 (228)
..+++||+|....
T Consensus 271 t~iilTKlD~~a~ 283 (328)
T 3e70_C 271 DGIILTKLDADAR 283 (328)
T ss_dssp CEEEEECGGGCSC
T ss_pred CEEEEeCcCCccc
Confidence 6788999997543
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=1.2e-07 Score=78.87 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEeEee----------------e
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTT----------------V 64 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~----------------~ 64 (228)
++.+|+++|++|+||||++..|. |..+.......... ......+.. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987 33321100000000 000000000 0
Q ss_pred eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (228)
Q Consensus 65 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~ 144 (228)
...+..+.++||||.... ......++....... .+|.+++|+++..+. ..+..+..+ ... .....+++
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~gq-----~a~~~a~~f-~~~-~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIGQ-----QAYNQALAF-KEA-TPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG-----GHHHHHHHH-HHS-CTTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCch-----hHHHHHHHH-Hhh-CCCeEEEE
Confidence 012356899999997642 333444444433222 568999999987321 122333332 211 12567899
Q ss_pred eCCCCCcc
Q 027090 145 TGGDDLED 152 (228)
Q Consensus 145 ~~~D~~~~ 152 (228)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998755
No 270
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.62 E-value=1.1e-07 Score=78.90 Aligned_cols=67 Identities=15% Similarity=-0.003 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEE---
Q 027090 117 FSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVL--- 182 (228)
Q Consensus 117 ~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 182 (228)
+|+|+++++.++..++.++.. +++| |.+++|.... ..+.++++.+. +|.. ++...|+.++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~--~~l~~~L~~l~~~~~vi~itH~~-~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAA--IAVAEQLSRLADTRQVLVVTHLA-QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSS-SEEEESSTTTTCCHHHH--HHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCC-CEEEEECCCCCCCHHHH--HHHHHHHHHHhCCCEEEEEeCcH-HHHhhcCeEEEEEEe
Confidence 799999999999988766521 3555 7899998877 88888887652 7887 456788888888
Q ss_pred -eeCCC
Q 027090 183 -FDNKT 187 (228)
Q Consensus 183 -~~~~~ 187 (228)
.++.+
T Consensus 372 ~~~G~~ 377 (415)
T 4aby_A 372 VEDGRT 377 (415)
T ss_dssp EETTEE
T ss_pred ccCCce
Confidence 56654
No 271
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.62 E-value=3.3e-08 Score=77.17 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 84 (228)
.+++++|.+|+|||||+|+|+|......+... ..|...... .....+.++||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQP-GITKGIQWF----SLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCC-CCccceEEE----EeCCCEEEEECCCcccCcC
Confidence 58999999999999999999998753333211 222222111 1234688999999987654
No 272
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.61 E-value=1.2e-07 Score=75.59 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.++..++|+|+||||||||++.|.|...
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999987544
No 273
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.59 E-value=6.1e-07 Score=72.28 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc-
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN- 135 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~s~~~~~~l~~~~~~~~~~- 135 (228)
+...+.++||+| ++.........+++++++++|++++ ..-+.. ..+.++...+..+
T Consensus 159 ~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~--es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLT--ESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHH--HHHHHHHHHHHCGG
T ss_pred eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccchHH--HHHHHHHHHhhhhc
Confidence 456789999999 1333444556678999999999997 222222 2223333333221
Q ss_pred -ccccEEEEEeCCCCCc
Q 027090 136 -VFDYMIVVFTGGDDLE 151 (228)
Q Consensus 136 -~~~~~llv~~~~D~~~ 151 (228)
...|++|++||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 1238999999999864
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.58 E-value=2.1e-07 Score=78.30 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcce--------------eeEeEeee-------------
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTK--------------TCEMKTTV------------- 64 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~--------------~~~~~~~~------------- 64 (228)
...++..++|+|+||||||||++.|.|...+..+. ...+... ...+....
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 34567899999999999999999998764332221 0001000 00111000
Q ss_pred ---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh---c-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc
Q 027090 65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM---A-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137 (228)
Q Consensus 65 ---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~ 137 (228)
...+..+.++||+|.... ......++...... . ...++.+++++++..+ +..+..+..+.....
T Consensus 369 ~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-----q~al~~ak~f~~~~~- 439 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-----QNAVSQAKLFHEAVG- 439 (503)
T ss_dssp HHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT-----HHHHHHHHHHHHHTC-
T ss_pred HHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc-----HHHHHHHHHHHhhcC-
Confidence 012345789999997643 23333343333221 1 2346788889987622 122233333211111
Q ss_pred ccEEEEEeCCCCCcc
Q 027090 138 DYMIVVFTGGDDLED 152 (228)
Q Consensus 138 ~~~llv~~~~D~~~~ 152 (228)
...+++||+|....
T Consensus 440 -itgvIlTKLD~tak 453 (503)
T 2yhs_A 440 -LTGITLTKLDGTAK 453 (503)
T ss_dssp -CSEEEEECGGGCSC
T ss_pred -CCEEEEEcCCCccc
Confidence 35678999997543
No 275
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.56 E-value=3.8e-06 Score=67.33 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=72.3
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-------CCC-CHHHHHHHHHHHHHhCcc--c
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRF-SQEEETAVHRLPNLFGKN--V 136 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~-s~~~~~~l~~~~~~~~~~--~ 136 (228)
++..+.++||.| ++.........+++++++++|++++ +.- .......+.++...+..+ .
T Consensus 165 ~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 165 QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 456789999999 1233344456678999999999764 111 111222334444444322 1
Q ss_pred cccEEEEEeCCCCCccc--hhhHHHHhhccC--CchHHHHHHh----------cC-CeEEEeeCCCcccccchHHHHHHH
Q 027090 137 FDYMIVVFTGGDDLEDH--EKTLEDFLGHEC--PKPLKEILQL----------CD-NRCVLFDNKTKDEAKGTEQVRQLL 201 (228)
Q Consensus 137 ~~~~llv~~~~D~~~~~--~~~~~~~~~~~~--~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~l~ 201 (228)
..|++|++||+|+.... ...+..+...+. .....+..+. +. ..+..+. .+|.+..++++++
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~----TsA~d~~nV~~vF 309 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF----TCATDTENIRFVF 309 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----CCTTCHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----EEeecCHHHHHHH
Confidence 23899999999976430 011222222211 1233333332 22 2222222 4677789999999
Q ss_pred HHHHHHHHhcC
Q 027090 202 SLVNSVIVQNG 212 (228)
Q Consensus 202 ~~i~~~~~~~~ 212 (228)
+.+.+.+..++
T Consensus 310 ~~v~~~Il~~~ 320 (327)
T 3ohm_A 310 AAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99988776643
No 276
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=2.2e-08 Score=79.75 Aligned_cols=60 Identities=30% Similarity=0.363 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 82 (228)
++..++|+|+||||||||+|+|+|...+.++.... ..|...... . .. ...++||||+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSSL 237 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCcccc
Confidence 46799999999999999999999987655542211 222111111 1 11 3579999998763
No 277
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.52 E-value=1.9e-07 Score=77.64 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC---------------CCcceeeEe----------Eeeee-
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS---------------SGVTKTCEM----------KTTVL- 65 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~---------------~~~t~~~~~----------~~~~~- 65 (228)
++..|+++|++|+||||++..|. |..+....... ......... .....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46899999999999999999987 32221000000 000000000 00000
Q ss_pred -eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (228)
Q Consensus 66 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~ 144 (228)
.....+.++||||..... .+.....++....... .++.+++|+++... .+ .+..+..+ ... ..+..+++
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g---q~--a~~~a~~f-~~~-~~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG---QK--AYDLASRF-HQA-SPIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG---GG--GHHHHHHH-HHH-CSSEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc---hH--HHHHHHHH-hcc-cCCcEEEE
Confidence 124568899999965421 1223334544433333 45889999998632 11 12223222 211 12577899
Q ss_pred eCCCCCcc
Q 027090 145 TGGDDLED 152 (228)
Q Consensus 145 ~~~D~~~~ 152 (228)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998654
No 278
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.51 E-value=7.8e-08 Score=84.76 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcccccc-EEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDY-MIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCV 181 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~-~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 181 (228)
..+|+|+++++.++++++.+|. | ++| |++.+|.... .++.++++++. +|++..+ ..|+.+++
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~--~~lLlLDEPtsgLD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~ii~ 275 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLT--GVLYVLDEPSIGLHQRDN--DRLIATLKSMRDLGNTLIVVEHDEDTM-LAADYLID 275 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCC--SCEEEEECTTTTCCGGGH--HHHHHHHHHHHHTTCEEEEECCCHHHH-HHCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhhCCC--CCEEEEECCccCCCHHHH--HHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEE
Confidence 4699999999999999988762 2 444 7799999877 88887776643 8898864 56888888
Q ss_pred E
Q 027090 182 L 182 (228)
Q Consensus 182 ~ 182 (228)
+
T Consensus 276 l 276 (670)
T 3ux8_A 276 I 276 (670)
T ss_dssp E
T ss_pred e
Confidence 7
No 279
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.50 E-value=2.6e-07 Score=70.18 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+|+|+|.+|||||||++.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
No 280
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.48 E-value=3.5e-07 Score=76.26 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC------cccccCCCC----------------------CcceeeE--e--Eeeeee
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRK------AFKASAGSS----------------------GVTKTCE--M--KTTVLK 66 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~------~~~~~~~~~----------------------~~t~~~~--~--~~~~~~ 66 (228)
..+|+++|++|+||||+++.|.+.. +.-...... ..+.... . ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997632 100000000 0010000 0 001112
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc-ccEEEEEe
Q 027090 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT 145 (228)
Q Consensus 67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~-~~~llv~~ 145 (228)
.+..+.++||||.... ......++.. + .....+|.+++++++..+. ..+..+..+ .. .. +...+++|
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~-----~~~~~~~~~-~~-~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ-----QAGIQAKAF-KE-AVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG-----GHHHHHHHH-HT-TSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH-----HHHHHHHHH-hh-cccCCeEEEEe
Confidence 4556899999997642 2222233221 1 1223689999999986332 122333322 21 11 14788999
Q ss_pred CCCCCcc
Q 027090 146 GGDDLED 152 (228)
Q Consensus 146 ~~D~~~~ 152 (228)
|+|....
T Consensus 247 K~D~~~~ 253 (432)
T 2v3c_C 247 KLDGSAK 253 (432)
T ss_dssp CSSSCST
T ss_pred CCCCccc
Confidence 9998643
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.43 E-value=3.9e-06 Score=68.20 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
..++..++|+|+||||||||++.|+|...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 45678999999999999999999988644
No 282
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.43 E-value=3.5e-07 Score=72.87 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=36.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 81 (228)
+..++|+|+||||||||+|+|+ ...+.+|.-.. ..|...... . . .....++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~-~-~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--P-F-GKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--E-E-TTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--E-c-CCCcEEEECcCcCc
Confidence 5689999999999999999999 76655542221 112111111 1 1 12357899999863
No 283
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=2.4e-07 Score=73.80 Aligned_cols=61 Identities=30% Similarity=0.304 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 83 (228)
+..++++|+||||||||+|+|.|...+.+|.... ..|...... .......++|+||+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~----~~~~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL----KFDFGGYVVDTPGFANLE 235 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE----ECTTSCEEESSCSSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE----EcCCCCEEEECcCCCccC
Confidence 5689999999999999999999988765552211 122111111 111235789999976543
No 284
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.1e-08 Score=81.92 Aligned_cols=158 Identities=10% Similarity=0.007 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEe-EeeeeeCCc-EEEEEeCC-CCCCCCCCcHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEM-KTTVLKDGQ-VVNVIDTP-GLFDLSAGSEFVGKE 92 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~-~~~~iDtp-G~~~~~~~~~~~~~~ 92 (228)
.++.+++|+|+||||||||+++|+|...+..| . .+..+... .......+. ....+.++ -..+........ .
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~---pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~-~- 210 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ---PLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT-S- 210 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC---CEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB-S-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCce---eEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc-c-
Confidence 35679999999999999999999998765444 2 01111100 000000011 11001100 000000000000 0
Q ss_pred HHHHHhhccCCccEEEEEEeCC-----CCCCHHHHHHHHHHHH--HhCcccccc----EEE---EEeCCCCCccchhhHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVT-----NRFSQEEETAVHRLPN--LFGKNVFDY----MIV---VFTGGDDLEDHEKTLE 158 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~-----~~~s~~~~~~l~~~~~--~~~~~~~~~----~ll---v~~~~D~~~~~~~~~~ 158 (228)
. ......+..++..+... ..+|.++++++.++++ +..++. - +++ +++.+|.. . ..+.
T Consensus 211 --~--~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~--i~~sGLlLDEpPts~LD~~-~--~~l~ 281 (460)
T 2npi_A 211 --G--ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ--VRRSGCIVDTPSISQLDEN-L--AELH 281 (460)
T ss_dssp --S--CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH--HHHSCEEEECCCGGGSCSS-C--HHHH
T ss_pred --C--cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc--cCcceEEEeCCcccccChh-H--HHHH
Confidence 0 00012233334333332 3689999999999999 887774 2 344 56778877 5 7777
Q ss_pred HHhhccC------Cch----HH--HHHHhcCC-----eEEEe-eCCCc
Q 027090 159 DFLGHEC------PKP----LK--EILQLCDN-----RCVLF-DNKTK 188 (228)
Q Consensus 159 ~~~~~~~------~~~----~~--~~~~~~~~-----~~~~~-~~~~~ 188 (228)
+.++... .|+ +. .+...|+. ++++. ++.+.
T Consensus 282 ~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 282 HIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred HHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 7776543 233 33 66677877 77776 77665
No 285
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.42 E-value=5.4e-06 Score=67.71 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHh------CccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhc
Q 027090 115 NRFSQEEETAVHRLPNLF------GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLC 176 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~------~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 176 (228)
..+|+|+++++.++.++. .+| +++| |++.+|.... ..+.+.+..+. +|++.. ...|
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p---~~lllDEpt~~LD~~~~--~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRL---DAFFIDEGFSSLDTENK--EKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTC---CEEEEESCCTTSCHHHH--HHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 479999999999988886 455 3555 8899998877 78777777643 788876 6778
Q ss_pred CCeEEEeeCCC
Q 027090 177 DNRCVLFDNKT 187 (228)
Q Consensus 177 ~~~~~~~~~~~ 187 (228)
+.++++.+|.+
T Consensus 352 d~~~~l~~G~i 362 (365)
T 3qf7_A 352 DRKLRITGGVV 362 (365)
T ss_dssp SCEEEEETTEE
T ss_pred CEEEEEECCEE
Confidence 88888877754
No 286
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.38 E-value=1.1e-07 Score=83.71 Aligned_cols=71 Identities=18% Similarity=0.061 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++++++.++....++| |++.+|.... ..+.+.++++. +|++..+ ..|++++++
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~--~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l 618 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDL 618 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHH--HHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEe
Confidence 4799999999999999987652112444 7799998776 77777666542 8999865 678888777
Q ss_pred ------eeCCCc
Q 027090 183 ------FDNKTK 188 (228)
Q Consensus 183 ------~~~~~~ 188 (228)
.+|.+.
T Consensus 619 ~~~~g~~~G~i~ 630 (670)
T 3ux8_A 619 GPEGGDRGGQIV 630 (670)
T ss_dssp ESSSGGGCCEEE
T ss_pred cCCcCCCCCEEE
Confidence 566654
No 287
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.38 E-value=1.5e-06 Score=69.28 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=67.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCcc-----------eeeEeEee---------------
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVT-----------KTCEMKTT--------------- 63 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~t-----------~~~~~~~~--------------- 63 (228)
..++..++|+|++|+||||++..|.+......+ ....... ........
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 345679999999999999999998765321111 0000000 00000000
Q ss_pred -eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccc
Q 027090 64 -VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138 (228)
Q Consensus 64 -~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~ 138 (228)
....+..+.++||||... ......+++....... ...++.+++++++. +. +..+..+..+.... .
T Consensus 181 ~a~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~~~~--~ 250 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFKEAV--N 250 (306)
T ss_dssp HHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHHHHS--C
T ss_pred HHHhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHHhcC--C
Confidence 012344589999999532 2333334443332221 23578889999886 22 22233333322111 1
Q ss_pred cEEEEEeCCCCCcc
Q 027090 139 YMIVVFTGGDDLED 152 (228)
Q Consensus 139 ~~llv~~~~D~~~~ 152 (228)
..-+++||+|....
T Consensus 251 i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 251 VTGIILTKLDGTAK 264 (306)
T ss_dssp CCEEEEECGGGCSC
T ss_pred CCEEEEeCCCCccc
Confidence 35568899997654
No 288
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.36 E-value=1.4e-06 Score=72.69 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC-----------------CcccccCCCCCcceeeEeEee----eeeC--CcEEEE
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKTT----VLKD--GQVVNV 73 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~~----~~~~--~~~~~~ 73 (228)
.+-..|+|+|+.++|||||+|.|+|. ..+..+......|.-...... .... ...+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34568999999999999999999864 111111111222222211100 0011 235889
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (228)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~ 131 (228)
+||||+.+.... ......++.... --.+.+++-. ...+...+...|+++...
T Consensus 145 lDTeG~~~~~~~-~~~d~~ifal~~---lLSs~~IyN~--~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 145 MDTQGTFDSQST-LRDSATVFALST---MISSIQVYNL--SQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEECCCSSHHH-HHHHHHHHHHHH---HHCSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred EcCCcccccccc-hhhhHHHHHHHH---HHhhHHHHhh--cccccHHHHHHHHHHHHH
Confidence 999999875321 111111221111 0124444444 347888888777766554
No 289
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.35 E-value=3.3e-07 Score=74.34 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS 48 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~ 48 (228)
++..++|+|+||||||||+|+|+|... +.+|
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 356899999999999999999999876 5554
No 290
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.28 E-value=3.5e-07 Score=65.75 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~ 48 (228)
+++..++|+|+||||||||++.|+|.. +..|
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 566899999999999999999999987 5555
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.25 E-value=2.9e-06 Score=67.30 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC------CcccccCCCC-Ccce----------eeEeE--------------eeee--
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR------KAFKASAGSS-GVTK----------TCEMK--------------TTVL-- 65 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~------~~~~~~~~~~-~~t~----------~~~~~--------------~~~~-- 65 (228)
+..++++|++|+||||++..|.+. .+.-.+.... +... ..... ....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 679999999999999999998743 2211111100 0000 00000 0000
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~ 145 (228)
..+..+.++||||.... ...+....++...... ..+|.+++++++... ...++.+..+ .... +...+++|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~--~~~d~vllVvda~~g-----~~~~~~~~~~-~~~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEA--IKPDEVTLVIDASIG-----QKAYDLASKF-NQAS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG-----GGHHHHHHHH-HHTC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch-----HHHHHHHHHH-HhhC-CCCEEEEe
Confidence 14456899999997651 1222233333222111 156889999998621 2223333332 2111 13777999
Q ss_pred CCCCCcc
Q 027090 146 GGDDLED 152 (228)
Q Consensus 146 ~~D~~~~ 152 (228)
|+|....
T Consensus 248 k~D~~~~ 254 (297)
T 1j8m_F 248 KMDGTAK 254 (297)
T ss_dssp CGGGCTT
T ss_pred CCCCCcc
Confidence 9997644
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.24 E-value=1.2e-06 Score=69.41 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.++.+++|+|++|+||||++..|.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999987543
No 293
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.24 E-value=4.7e-07 Score=68.00 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+-.++..++|+|+||||||||+++|+|..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999999875
No 294
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.20 E-value=1.7e-06 Score=78.10 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|++|++.+++++..++....++| |++.+|.... ..+.+.++++. +|++..+ ..|++++++
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~--~~L~~lL~~L~~~G~TVIvI~HdL~~i-~~ADrIivL 880 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDV--RKLVEVLHRLVDRGNTVIVIEHNLDVI-KNADHIIDL 880 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEe
Confidence 4799999999999999976542112444 6799998876 77777766542 8898765 568888777
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.20 E-value=2.7e-07 Score=69.48 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccccC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~ 49 (228)
++..++|+|+||||||||+++|+|. .+.+|.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 4578999999999999999999998 766653
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.18 E-value=5.9e-07 Score=67.04 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..++|+|+||||||||++.|+|..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998853
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.14 E-value=1.1e-06 Score=66.71 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.+++..++|+|+||||||||+++|+|...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35678999999999999999999998754
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.13 E-value=9.6e-07 Score=66.93 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.-+++..++|+|+||||||||++.|+|..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999999865
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.13 E-value=1.1e-06 Score=64.47 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999875
No 300
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.12 E-value=1.3e-06 Score=65.24 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+++..++|+|+||||||||++.|.+..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356799999999999999999999863
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.06 E-value=1.9e-06 Score=63.17 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..++|+|++|||||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 302
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.05 E-value=2.8e-06 Score=62.66 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+++..++|+|+||||||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999999986
No 303
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.05 E-value=2.1e-06 Score=64.46 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.+++..++|+|+||||||||++.|.|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999998754
No 304
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.05 E-value=2.2e-06 Score=62.36 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+++..++|+|+||||||||++++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3567999999999999999998764
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.04 E-value=3.4e-05 Score=61.79 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++..++|+|++|+||||++..|.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456689999999999999999988654
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=1.7e-06 Score=63.87 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
..++|+|+||||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999998653
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.01 E-value=2.5e-06 Score=64.00 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++++..|+|+|++|||||||++.|.|..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566899999999999999999998863
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.01 E-value=2.6e-06 Score=67.63 Aligned_cols=135 Identities=9% Similarity=0.028 Sum_probs=70.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 95 (228)
-+++.+++|+|+||||||||+++|+|.. .|.............. ......++.+.+.. .... .++..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~-~ti~~~ni~~~~~~--------~~~~-~~~i~ 189 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWL-ASLADTRAALVDDA--------THAC-WRYFD 189 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGG-GGGTTCSCEEEEEE--------CHHH-HHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcccccc-ccHHHHhhccCccc--------cHHH-HHHHH
Confidence 4567899999999999999999999753 1100000000000000 00111122222110 0111 22222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (228)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (228)
.+ ...+.+ ...+|+|++++ +++++.+| +++| ++.+|.... ..+.. + +|.+.. ...
T Consensus 190 ~~--L~~gld--------g~~LSgGqkQR---ARAll~~p---~iLl-Ts~LD~~~~--~~i~~-l----tH~~~~-~~~ 244 (305)
T 2v9p_A 190 TY--LRNALD--------GYPVSIDRKHK---AAVQIKAP---PLLV-TSNIDVQAE--DRYLY-L----HSRVQT-FRF 244 (305)
T ss_dssp HT--TTGGGG--------TCCEECCCSSC---CCCEECCC---CEEE-EESSCSTTC--GGGGG-G----TTTEEE-EEC
T ss_pred HH--hHccCC--------ccCcCHHHHHH---HHHHhCCC---CEEE-ECCCCHHHH--HHHHH-H----hCCHHH-HHh
Confidence 21 112233 34799999987 67776666 5777 999998876 65542 1 444432 456
Q ss_pred cCCeEEEeeCCCcc
Q 027090 176 CDNRCVLFDNKTKD 189 (228)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (228)
|+.+ ++.+|.+..
T Consensus 245 aD~i-vl~~G~iv~ 257 (305)
T 2v9p_A 245 EQPC-TDESGEQPF 257 (305)
T ss_dssp CCCC-CCC---CCC
T ss_pred CCEE-EEeCCEEEE
Confidence 8888 777776653
No 309
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.00 E-value=5.6e-05 Score=63.02 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-------CCCcccccCCCC-Cccee----------eEeEe--------------ee
Q 027090 17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSS-GVTKT----------CEMKT--------------TV 64 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~-------g~~~~~~~~~~~-~~t~~----------~~~~~--------------~~ 64 (228)
.+..+|+++|++|+||||+...|. |..+........ +.... ..... ..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 445789999999999999999887 544321111100 00000 00000 00
Q ss_pred --eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE
Q 027090 65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (228)
Q Consensus 65 --~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll 142 (228)
...+..+.++||||.... ......++..... .-.++.+++|+++..... .+..+..+ .... ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~-----~~~~~~~f-~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD-----AANTAKAF-NEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT-----HHHHHHHH-HHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH-----HHHHHHHH-hccC-CCeEE
Confidence 013556899999996542 2223233332221 225788899999873322 22333322 2111 12446
Q ss_pred EEeCCCCCcc
Q 027090 143 VFTGGDDLED 152 (228)
Q Consensus 143 v~~~~D~~~~ 152 (228)
++||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 8999998644
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.99 E-value=3.3e-06 Score=65.74 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF 45 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~ 45 (228)
..++..++|+|+||||||||+++|+|...+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 456789999999999999999999987543
No 311
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.97 E-value=2.9e-05 Score=64.49 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccc------cCCCCCc-ce----------eeEeEe--------------eee-
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGV-TK----------TCEMKT--------------TVL- 65 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~------~~~~~~~-t~----------~~~~~~--------------~~~- 65 (228)
++..++++|++|+||||++..|.+...... +...... .. ...... ...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999875432110 0000000 00 000000 000
Q ss_pred -eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (228)
Q Consensus 66 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~ 144 (228)
..+..+.++||||.... ......++....... .++.+++|+++... +..+..+..+ ... ....-+++
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~f-~~~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARAF-DEK-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHHH-HHH-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHHH-Hhc-CCceEEEE
Confidence 13456899999996543 233334433332222 56888999998622 2223333332 211 12356688
Q ss_pred eCCCCCcc
Q 027090 145 TGGDDLED 152 (228)
Q Consensus 145 ~~~D~~~~ 152 (228)
||+|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99997544
No 312
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.96 E-value=0.00012 Score=61.05 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=61.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh-------CC----------CcccccCCCCCcceeeEeEe----eeeeCC--cEEE
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSIL-------GR----------KAFKASAGSSGVTKTCEMKT----TVLKDG--QVVN 72 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~-------g~----------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~ 72 (228)
..+-..|+|+|+.++|||+|+|.|+ |. ..+..+.....+|.-...-. .....+ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3455789999999999999999775 21 12222223333443333211 111122 3589
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090 73 VIDTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (228)
Q Consensus 73 ~iDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~ 131 (228)
++||.|+++.....+.- ..++. .+-.+ ..+||-.. ..+...+.+.|+++..+
T Consensus 144 llDTEG~~d~~~~~~~d-~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel 196 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDS-ATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEY 196 (457)
T ss_dssp EEEECCBTCTTCCHHHH-HHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCcccc-HHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHH
Confidence 99999998876543221 22222 11122 45555544 46778887777766554
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.92 E-value=3.9e-06 Score=62.11 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.+++|+|+||+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5799999999999999999998754
No 314
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.91 E-value=6e-06 Score=61.37 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.-+++.++|+|++|||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3466799999999999999999998753
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.90 E-value=5.9e-06 Score=66.01 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.+++..|+|+|+||||||||++.|.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46678999999999999999999998754
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.89 E-value=3.6e-06 Score=64.23 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=18.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh-CCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSIL-GRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~-g~~ 43 (228)
-+++..++|+|+||||||||++.|. +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3556799999999999999999999 864
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.88 E-value=7.3e-06 Score=63.11 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---CCCccc
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK 46 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~---g~~~~~ 46 (228)
++.+|+|+|+||||||||++.|. |...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 45799999999999999999999 876543
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.88 E-value=6.9e-06 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+++..++|+|++|||||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456799999999999999999998765
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.88 E-value=7.2e-06 Score=66.87 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAF 45 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~ 45 (228)
++..++|+|+||||||||+++|+|...+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5679999999999999999999998664
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.86 E-value=7.5e-06 Score=60.98 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++..|+|+|++||||||+++.|.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 445689999999999999999999764
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.85 E-value=8.1e-06 Score=62.86 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=23.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..-+++..|+|+|++|||||||++.|.+.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456689999999999999999999874
No 322
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.85 E-value=6.8e-06 Score=66.18 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAF 45 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~ 45 (228)
++..++|+|+||||||||+++|+|...+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4568999999999999999999998654
No 323
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.85 E-value=5.1e-06 Score=66.07 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
..++..++|+|+||||||||++.|+|...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999988644
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.84 E-value=1.1e-05 Score=58.60 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+..++..|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp CCTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3455689999999999999999998753
No 325
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.83 E-value=0.00015 Score=58.96 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=67.4
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHHHhCcc
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----------RFSQEEETAVHRLPNLFGKN 135 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~s~~~~~~l~~~~~~~~~~ 135 (228)
.+...+.++||+|- +..........++++++++|+++++ .-+..+ .+.++...+..+
T Consensus 198 ~~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~e--s~~~~~~i~~~~ 264 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE--SLNIFETIVNNR 264 (362)
T ss_dssp ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHH--HHHHHHHHHTCG
T ss_pred eCCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHH--HHHHHHHHhcch
Confidence 35677999999992 2223334456678999999999984 122222 223333333221
Q ss_pred --ccccEEEEEeCCCCCccchh----hHHHHhhccC-C-chHHHHHHhc--------C----CeEEEeeCCCcccccchH
Q 027090 136 --VFDYMIVVFTGGDDLEDHEK----TLEDFLGHEC-P-KPLKEILQLC--------D----NRCVLFDNKTKDEAKGTE 195 (228)
Q Consensus 136 --~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~-~-~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~ 195 (228)
...|++|++||.|+... + .+..+...+. . ....+..+.+ . ..+.. ...+|.++.
T Consensus 265 ~~~~~piILv~NK~DL~~~--ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~----~~tSA~d~~ 338 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEE--KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYH----HFTTAINTE 338 (362)
T ss_dssp GGTTSEEEEEEECHHHHHH--HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEE----EECCTTCHH
T ss_pred hhCCCCEEEEEEChhhhhh--hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEE----EEEecCCch
Confidence 12389999999998632 1 1111111110 0 1122222221 1 11222 234778889
Q ss_pred HHHHHHHHHHHHHHh
Q 027090 196 QVRQLLSLVNSVIVQ 210 (228)
Q Consensus 196 ~~~~l~~~i~~~~~~ 210 (228)
++.++++.+.+.+..
T Consensus 339 nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 339 NIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988776654
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.83 E-value=7e-06 Score=62.22 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
-+++..++|+|+||||||||++.|+|..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999999998843
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.83 E-value=8.9e-06 Score=62.46 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
.-+++..++|+|+||||||||+++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34567899999999999999999998
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.82 E-value=1e-05 Score=60.29 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..++|+|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998875
No 329
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.80 E-value=1.3e-05 Score=61.14 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+++..|+|.|++||||||+++.|.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34466789999999999999999999875
No 330
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.77 E-value=1.1e-05 Score=59.40 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..++|+|+||||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 331
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.76 E-value=1.5e-05 Score=61.64 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh---CCCcccc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKA 47 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~---g~~~~~~ 47 (228)
.++.+|+|+|++||||||+.+.|. |...+.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 456799999999999999999999 7655443
No 332
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.76 E-value=2.1e-05 Score=70.50 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++..+..++....++| |++++|.... ..+.+.++.+. +|++..+ ..|++++++
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~--~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV--ERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 4799999999999999877520002444 7799998776 77777665442 8999888 778877777
No 333
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.75 E-value=1.5e-05 Score=63.47 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
..++..|+|+|++|||||||++.|.|..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999999998853
No 334
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.73 E-value=1.5e-05 Score=64.73 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
++..++|+|+||||||||+++|+|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 446999999999999999999988654
No 335
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.72 E-value=1.2e-05 Score=67.76 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~ 48 (228)
..++|+|+||||||||+++|+|...+.+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 69999999999999999999987655444
No 336
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.72 E-value=1.2e-05 Score=65.05 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~ 46 (228)
+-.++.+++|+|+||+|||||+++|+|...+.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44567899999999999999999999986543
No 337
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.71 E-value=0.00031 Score=56.92 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=70.3
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhCcc--
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS--------QEEETAVHRLPNLFGKN-- 135 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s--------~~~~~~l~~~~~~~~~~-- 135 (228)
.+...+.++||+|-. .+........++++++++|+++++.-+ ......+.++...+..+
T Consensus 190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 356779999999922 222334456678999999999984211 11223334444433321
Q ss_pred ccccEEEEEeCCCCCccchh----hHHHHhhccC-CchHHHHHHhc------------CCeEEEeeCCCcccccchHHHH
Q 027090 136 VFDYMIVVFTGGDDLEDHEK----TLEDFLGHEC-PKPLKEILQLC------------DNRCVLFDNKTKDEAKGTEQVR 198 (228)
Q Consensus 136 ~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 198 (228)
...|++|++||.|+... + .+..+...+. .....+..+.+ ...+..+ ..+|.++.++.
T Consensus 259 ~~~piiLv~NK~DL~~~--ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~ 332 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEE--KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQ 332 (353)
T ss_dssp TTSEEEEEEECHHHHHH--HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHH
T ss_pred cCCcEEEEEECcCchhh--hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHH
Confidence 12389999999998532 1 0111100000 01112221111 1222222 34778889999
Q ss_pred HHHHHHHHHHHhc
Q 027090 199 QLLSLVNSVIVQN 211 (228)
Q Consensus 199 ~l~~~i~~~~~~~ 211 (228)
++++.+.+.+...
T Consensus 333 ~vF~~v~~~i~~~ 345 (353)
T 1cip_A 333 FVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777654
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=1.4e-05 Score=66.34 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.++..++|+|+||||||||+++|+|...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999998654
No 339
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.69 E-value=1.8e-05 Score=64.74 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
..++..++|+|+||||||||+++|++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35677999999999999999999998654
No 340
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.69 E-value=1.8e-05 Score=67.42 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKAF 45 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~ 45 (228)
.+..++|+|+||||||||+++|+|...+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999987653
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.69 E-value=2.2e-05 Score=58.46 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.++..|+|+|++||||||+.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998754
No 342
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.69 E-value=1.4e-05 Score=65.25 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=27.0
Q ss_pred CCCCC--CeEEEEEcCCCCCHHHHHHHHhCCCccc
Q 027090 14 SPSNG--ERTVVLLGRTGNGKSATGNSILGRKAFK 46 (228)
Q Consensus 14 ~~~~~--~~~i~l~G~~g~GKSTlin~l~g~~~~~ 46 (228)
..-.+ +.+++|+|+||||||||+++|.|...+.
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33444 6899999999999999999999976543
No 343
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.68 E-value=1.5e-05 Score=72.29 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSI 39 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l 39 (228)
.++..++|+||||+|||||++++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999999
No 344
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2.3e-05 Score=56.66 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+..|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 345
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=2.1e-05 Score=57.43 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
++..++|+|++|+|||||+++|.+...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999987653
No 346
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.60 E-value=2.5e-05 Score=65.20 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=27.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAF 45 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~ 45 (228)
.+-.++.+++|+|+||||||||+++|+|...+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45567789999999999999999999997653
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.55 E-value=4.1e-05 Score=55.88 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..+|+|+||||||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999754
No 348
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=3e-05 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
++..++|+|++|+|||||++++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999997643
No 349
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.54 E-value=1.6e-05 Score=57.77 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
..++|+|++|||||||++.|.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999988754
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.52 E-value=5.8e-05 Score=60.36 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.....|+|+|++|||||||++.|.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999997653
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.51 E-value=5.7e-05 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+..|+|+|++|||||||++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999864
No 352
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.50 E-value=5.5e-05 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+..|+|+|++||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999754
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.49 E-value=9.6e-05 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
...++|+|++|||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4589999999999999999999864
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=9e-05 Score=55.29 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+++..|+|+|++||||||+.+.|.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34455689999999999999999999876
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.43 E-value=7.6e-05 Score=56.39 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.43 E-value=0.0001 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~ 40 (228)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999985
No 357
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.42 E-value=6.3e-05 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+++..++|+|+||+|||||++.|++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998543
No 358
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.40 E-value=7.5e-05 Score=59.00 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.-.++..++|+|+||+|||||++.|++...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999987654
No 359
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.0001 Score=54.71 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++.+|+|+|++||||||+.+.|...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999743
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.40 E-value=9.8e-05 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.36 E-value=8.3e-05 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 362
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.33 E-value=9.4e-06 Score=61.75 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~ 48 (228)
..++|+|+||||||||+++|+|...+.+|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 35789999999999999999987664443
No 363
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.33 E-value=0.00013 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...|+|+|++||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999653
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.32 E-value=0.00015 Score=57.23 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
..++..|+|+|++|||||||.+.|.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456899999999999999999997654
No 365
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.30 E-value=0.00013 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~ 42 (228)
-|+|+||+|||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=0.00012 Score=53.29 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++|+|++|||||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 367
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.30 E-value=0.0014 Score=48.37 Aligned_cols=70 Identities=6% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCC
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~ 147 (228)
...+.++|+|+... ......+.. +|.+++++..+ ..+......++.+...-......++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45689999998553 223333333 38899999887 44444455566665432111112457899999
Q ss_pred CCCc
Q 027090 148 DDLE 151 (228)
Q Consensus 148 D~~~ 151 (228)
|...
T Consensus 141 ~~~~ 144 (206)
T 4dzz_A 141 IEMA 144 (206)
T ss_dssp CTTE
T ss_pred CCCc
Confidence 9654
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.00011 Score=57.51 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 027090 22 VVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++|+|+||+|||||+++|.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999998753
No 369
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00082 Score=54.49 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=42.6
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc--
Q 027090 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN-- 135 (228)
Q Consensus 68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~s~~~~~~l~~~~~~~~~~-- 135 (228)
...+.++||+|-.. +.......+++++++++|++++ +.-+..+ ...++......+
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~--~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME--TKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHH--HHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHH--HHHHHHHHHhcccc
Confidence 35689999999322 2233345567899999999986 2323332 223333333211
Q ss_pred ccccEEEEEeCCCCCc
Q 027090 136 VFDYMIVVFTGGDDLE 151 (228)
Q Consensus 136 ~~~~~llv~~~~D~~~ 151 (228)
...|++|++||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 1238999999999753
No 370
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.26 E-value=0.00022 Score=52.14 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+..++.+|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445679999999999999999999654
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.26 E-value=0.00022 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 13 TSPSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+++...+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 4 TDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34445568999999999999999999964
No 372
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.24 E-value=0.00017 Score=54.09 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
-+++..++|+|++|+|||||+..|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999999987
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.24 E-value=0.00018 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
++..|+|+|.+||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999764
No 374
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.22 E-value=0.00017 Score=59.04 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
-+++..++|+|++|+|||||+++|.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345579999999999999999999864
No 375
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00015 Score=55.30 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
-+++..++|+|++|+|||||+..|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345679999999999999999999874
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.21 E-value=0.00031 Score=52.07 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=24.8
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 12 PTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..+......|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445556667999999999999999999863
No 377
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.19 E-value=0.00033 Score=51.22 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++..|+|+|.+||||||+.+.|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999764
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.0003 Score=52.14 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=23.3
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+......+..|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 12 SGLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ----CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445556667999999999999999999863
No 379
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00025 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
.+..|+|+|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999996
No 380
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.14 E-value=0.00019 Score=55.28 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 027090 22 VVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~ 42 (228)
++|+|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 381
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00027 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 382
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.12 E-value=0.00022 Score=63.85 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+++..++|+|+||+|||||+++|.|..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 466799999999999999999998753
No 383
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.12 E-value=0.00034 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~ 40 (228)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999873
No 384
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.12 E-value=0.0003 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.11 E-value=0.00022 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
..++|+|++|+|||||+++|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999998764
No 386
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.00021 Score=55.95 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
-+++..++|+|+||+|||||+..|++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999874
No 387
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.09 E-value=0.00035 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999975
No 388
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00032 Score=50.35 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 027090 20 RTVVLLGRTGNGKSATGNSI 39 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l 39 (228)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 389
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.08 E-value=0.0049 Score=50.75 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=45.6
Q ss_pred eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHHHhCcc
Q 027090 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----------RFSQEEETAVHRLPNLFGKN 135 (228)
Q Consensus 66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~s~~~~~~l~~~~~~~~~~ 135 (228)
..+..+.++||+|-. .+.......+++++++++|+++++ .-+..+. ..++......+
T Consensus 214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~--~~~~~~i~~~~ 280 (402)
T 1azs_C 214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA--LNLFKSIWNNR 280 (402)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH--HHHHHHHHTCT
T ss_pred cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH--HHHHHHHHhcc
Confidence 345679999999922 222334455678999999999984 3333332 23333333221
Q ss_pred --ccccEEEEEeCCCCCc
Q 027090 136 --VFDYMIVVFTGGDDLE 151 (228)
Q Consensus 136 --~~~~~llv~~~~D~~~ 151 (228)
...|++|++||+|+..
T Consensus 281 ~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLA 298 (402)
T ss_dssp TCSSCCEEEEEECHHHHH
T ss_pred cCCCCeEEEEEEChhhhh
Confidence 2238999999999754
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00037 Score=51.05 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 391
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.07 E-value=0.00021 Score=61.17 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHH--HhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNS--ILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~--l~g~~~ 44 (228)
-+++..++|+|+||||||||+++ +.|...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999 556543
No 392
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.07 E-value=0.00041 Score=54.64 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+...+..|+|.|++||||||+.+.|..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999964
No 393
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00027 Score=57.46 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHh---------CccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090 116 RFSQEEETAVHRLPNLF---------GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE 164 (228)
Q Consensus 116 ~~s~~~~~~l~~~~~~~---------~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~ 164 (228)
.+|.|+++.+.++.++. +.+ |++| |++.+|.... ..+.+.+...
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p---~iLLLDEp~s~LD~~~~--~~l~~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGED---PVLLLDDFTAELDPHRR--QYLLDLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSC---CEEEECCGGGCCCHHHH--HHHHHHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCC---CEEEEeCccccCCHHHH--HHHHHHHHhc
Confidence 47888888888888877 555 4555 7788887766 6676666553
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00026 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+.+|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 395
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.04 E-value=0.0003 Score=58.58 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+..++|+|+||+|||||+++|.+..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4689999999999999999997644
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.04 E-value=0.00027 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 027090 22 VVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 22 i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++|+|++|+|||||+++|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998753
No 397
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.03 E-value=0.00042 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999753
No 398
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.02 E-value=0.00042 Score=55.85 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCCCHHHHHH------HHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhc
Q 027090 115 NRFSQEEETA------VHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLC 176 (228)
Q Consensus 115 ~~~s~~~~~~------l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 176 (228)
..+|+|++++ +.++..+..+| ++++ |++++|.... ..+.+.+..+. +|+ .++...|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p---~~lllDEp~~~LD~~~~--~~l~~~l~~~~~~~~~vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEI---SLLILDEPTPYLDEERR--RKLITIMERYLKKIPQVILVSHD-EELKDAA 320 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTT---CEEEEECCCTTCCHHHH--HHHHHHHHHTGGGSSEEEEEESC-GGGGGGC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCC---CEEEEECCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEECh-HHHHHhC
Confidence 4699999994 44555555555 4555 8899998766 66666665421 455 3455556
Q ss_pred CCeEEE
Q 027090 177 DNRCVL 182 (228)
Q Consensus 177 ~~~~~~ 182 (228)
+..+.+
T Consensus 321 d~~~~l 326 (339)
T 3qkt_A 321 DHVIRI 326 (339)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 555444
No 399
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.02 E-value=0.00045 Score=49.88 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|+|++|||||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999864
No 400
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00032 Score=56.12 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHh----CccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCe
Q 027090 115 NRFSQEEETAVHRLPNLF----GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNR 179 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~----~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 179 (228)
..+|.++++++.++.++. .++ ++++ |++.+|.... ..+.+++.... +|.. ++...|+..
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~---~~lllDEp~~~LD~~~~--~~l~~~l~~~~~~~~vi~~tH~~-~~~~~~d~~ 291 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPS---PFYVLDEVDSPLDDYNA--ERFKRLLKENSKHTQFIVITHNK-IVMEAADLL 291 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCC---SEEEEESCCSSCCHHHH--HHHHHHHHHHTTTSEEEEECCCT-TGGGGCSEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCC---CEEEEeCCCCCCCHHHH--HHHHHHHHHhcCCCeEEEEECCH-HHHhhCceE
Confidence 369999999999999875 344 4555 8899998766 77777666542 5653 455666654
Q ss_pred --EEEeeCC
Q 027090 180 --CVLFDNK 186 (228)
Q Consensus 180 --~~~~~~~ 186 (228)
+.+.++.
T Consensus 292 ~~v~~~~g~ 300 (322)
T 1e69_A 292 HGVTMVNGV 300 (322)
T ss_dssp EEEEESSSC
T ss_pred EEEEEeCCE
Confidence 3344443
No 401
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.00 E-value=0.00031 Score=62.59 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
+..++|+|+||+|||||+++|.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6799999999999999999998864
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.00 E-value=0.00049 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+..+|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999999754
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.00052 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
++..|+|.|..||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999754
No 404
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.98 E-value=0.00031 Score=56.88 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
-+++..++|+|++|+|||||++.|++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998764
No 405
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.98 E-value=0.00048 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
..+|+|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.98 E-value=0.00051 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+.+|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999854
No 407
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00056 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh
Q 027090 18 GERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
....|+|+|++||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.97 E-value=0.00055 Score=52.04 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=22.0
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+.+......+|+|+|.+||||||+.+.|..
T Consensus 8 ~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 8 EPVPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ------CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455567899999999999999999863
No 409
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.96 E-value=0.00021 Score=61.28 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
.++..++|+|++|||||||.++|.+...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4668999999999999999999988654
No 410
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00048 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 411
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00058 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.0007 Score=51.44 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+..|+|.|++||||||+++.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 446789999999999999999999754
No 413
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00058 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
++..|+|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999863
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.0012 Score=52.23 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=49.4
Q ss_pred hccCCccEEEEEEeCCCCC-CHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 99 MAKDGIHAFLVVFSVTNRF-SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~-s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
..+..+|++++|+|++++. +.... +|+..+.. . . .|++||+||+|+... ..+.+ ..++.+..
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~-~--~piilv~NK~DL~~~--~~v~~---------~~~~~~~~ 143 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--N-E--LETVMVINKMDLYDE--DDLRK---------VRELEEIY 143 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--T-T--CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--C-C--CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence 3567889999999998554 55433 34444332 1 2 379999999998754 44311 11122222
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHH
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i 204 (228)
... ...+..||.++.+++++++.+
T Consensus 144 ~~~----~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 144 SGL----YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp TTT----SCEEECCTTTCTTHHHHHHHH
T ss_pred hhh----CcEEEEECCCCcCHHHHHHHh
Confidence 111 112345666777777777654
No 415
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00058 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.++..|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999974
No 416
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.01 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+.+-|+|.||+|+|||+|.++|.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999864
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.92 E-value=0.00064 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 418
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.91 E-value=0.00055 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 419
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00066 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.++..|+|+|.+||||||+.+.|.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999764
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00066 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.00055 Score=52.78 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+...+..|+|+|++||||||+.+.|...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445578999999999999999998753
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00067 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..|+|+|++|||||||.+.|...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 46899999999999999998643
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.83 E-value=0.0017 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..|+|+|++|||||||...|....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44689999999999999999998653
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.82 E-value=0.00071 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~ 40 (228)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00027 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 426
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.78 E-value=0.00074 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 427
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.77 E-value=0.00073 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+|+|+|++||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 428
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.011 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+-|++.||+|+|||+|.+++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 429
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.77 E-value=0.00044 Score=62.68 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.++..++|+||||+|||||++++.+
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 4567999999999999999999864
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.77 E-value=0.001 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
++.+|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999863
No 431
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.77 E-value=0.0012 Score=51.87 Aligned_cols=90 Identities=8% Similarity=0.131 Sum_probs=52.4
Q ss_pred HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (228)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
+......+|++++|+|+..+.+...... ...++. +|.++++||+|+... ...+.+++. .+..
T Consensus 17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~--~~~~~~~~~---------~~~~ 78 (282)
T 1puj_A 17 VTEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA--AVTQQWKEH---------FENQ 78 (282)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH--HHHHHHHHH---------HHTT
T ss_pred HHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH--HHHHHHHHH---------HHhc
Confidence 3334456799999999986665543221 122232 389999999999865 444332222 1111
Q ss_pred CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 210 (228)
+..++ ..++.++.++.+|++.+.+.+++
T Consensus 79 g~~~i------~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 79 GIRSL------SINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp TCCEE------ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCcEE------EEECCCcccHHHHHHHHHHHHHH
Confidence 11222 23455667788888877776653
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.77 E-value=0.0012 Score=49.67 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 15 PSNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
..++.++|.|+|++||||+|....|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345557889999999999999988864
No 433
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.77 E-value=0.0012 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 434
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.75 E-value=0.00086 Score=50.14 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~ 40 (228)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 435
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.017 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+-|++.||+|+|||+|.+++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 367999999999999999999864
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.75 E-value=0.001 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
..+.+|+|+|++||||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999875
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.73 E-value=0.00099 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027090 19 ERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~ 40 (228)
...|+|.|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 438
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.00091 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..++|.|++|+|||||.++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 439
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0099 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+-|++.||+|+|||+|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 440
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.71 E-value=0.0044 Score=50.50 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=58.3
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (228)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
+.+.+.+....+..+++++|+|+.+. +..+...+...+++ +|+++|+||+|+... ....+.+.. .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~ 123 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMR 123 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence 34444444444567899999999731 23344445554443 389999999998754 321111111 122
Q ss_pred HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
...+..+... ...+..||.++.++++|++.+.+...
T Consensus 124 ~~~~~~g~~~---~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 124 YSAKQLGLKP---EDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHHTTCCC---SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCCc---ccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 2233322210 01124577788999999999877653
No 441
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.71 E-value=0.00098 Score=49.87 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 442
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.70 E-value=0.0008 Score=61.86 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
+..++|+|+||+|||||++++ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 679999999999999999999 7654
No 443
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.67 E-value=0.0011 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 444
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.011 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+.+-|+|.||+|+|||+|.++|.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3468999999999999999999864
No 445
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.63 E-value=0.0011 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..++++|++|+||||++..|.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987653
No 446
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.62 E-value=0.0013 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
.|+|.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 447
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.61 E-value=0.0009 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+..|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 448
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0012 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090 17 NGERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
+++..++|.|++|+|||||...++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999976664
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0015 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.58 E-value=0.001 Score=56.84 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~ 44 (228)
-.++..++|+|+||+|||||++.+++...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999998654
No 451
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.57 E-value=0.0017 Score=47.04 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|.|++|+|||||++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0018 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090 17 NGERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
.....|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999996
No 453
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.56 E-value=0.0015 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 454
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.56 E-value=0.0015 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.54 E-value=0.0012 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+.+|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.52 E-value=0.0014 Score=47.05 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 457
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.51 E-value=0.0015 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.51 E-value=0.0016 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027090 20 RTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~ 40 (228)
...+|+|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999974
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0019 Score=49.67 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.....+|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.48 E-value=0.0021 Score=47.48 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+..|+|+|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999754
No 461
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.48 E-value=0.0017 Score=48.93 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027090 21 TVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~ 40 (228)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.46 E-value=0.002 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
....++|.|++|+|||||++++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 463
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.46 E-value=0.0016 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
++..++|.|++|+|||+|.++|.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.43 E-value=0.0017 Score=49.25 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 14 SPSNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.+..++..|+|.|+.||||||+++.|...
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999998643
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.42 E-value=0.0022 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...|+|+||+|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357999999999999999999754
No 466
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0028 Score=50.02 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
..+...++|.|++|+||||+.++|.+..
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3344689999999999999999998653
No 467
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.42 E-value=0.0021 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
..++|.|++|+|||+|..+|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998643
No 468
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.41 E-value=0.0016 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
++..++|+|++|+|||||.++|.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.41 E-value=0.0026 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...|+|+||+|||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468999999999999999998643
No 470
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0013 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.++|.|++|+||||++++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999873
No 471
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.40 E-value=0.0016 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~ 40 (228)
-+++..++|+|++|+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3456799999999999999999653
No 472
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0018 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+|+|+|.+||||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999853
No 473
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.38 E-value=0.0012 Score=60.14 Aligned_cols=65 Identities=17% Similarity=0.045 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++..+..++....++| |++.+|.... ..+.+.++.+. +|++..+ ..|++++++
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~--~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDI--RKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 4799999999999999976531112444 7799998876 77777665432 7888875 678877777
No 474
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.35 E-value=0.002 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|.|++|+||||+.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 475
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.32 E-value=0.0021 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|.|++|+|||||++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 476
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.31 E-value=0.0026 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
.+|+|.|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999853
No 477
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.28 E-value=0.0027 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
+|+|+|++||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 478
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.27 E-value=0.0036 Score=51.06 Aligned_cols=101 Identities=9% Similarity=0.003 Sum_probs=55.4
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (228)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (228)
+.+.+....++.+++++|+|+.+..+ .+...+...+++ +|+++|+||+|+... ....+.+.. .+.+.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence 33333333345689999999984332 222223333333 389999999998754 221111111 12222
Q ss_pred HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (228)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 209 (228)
.+...... ...+..||.++.++++|++.+.+...
T Consensus 128 ~~~~g~~~---~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCP---VDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCC---SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCc---ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33332210 01124577788999999999887664
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.27 E-value=0.0016 Score=51.35 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 480
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.26 E-value=0.0023 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+++.||+|+||||+..+|...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999888653
No 481
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.003 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g 41 (228)
-..|+|.|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.21 E-value=0.0032 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027090 20 RTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g 41 (228)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 483
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.19 E-value=0.0031 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027090 21 TVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g 41 (228)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999865
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.0042 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILG 41 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g 41 (228)
.....|+|+|.+||||||+.+.|..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999874
No 485
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.17 E-value=0.0012 Score=59.78 Aligned_cols=65 Identities=20% Similarity=0.084 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090 115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL 182 (228)
Q Consensus 115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 182 (228)
..+|+|+++++.++..+..++....++| |++.+|.... ..+.+.+..+. +|++..+ ..|++++++
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~--~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDL 920 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 4799999999999999976531112444 7799998876 77777665432 8888875 678877777
No 486
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.17 E-value=0.031 Score=41.53 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEe
Q 027090 68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT 145 (228)
Q Consensus 68 ~~~~~~iDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~ 145 (228)
...+.++|+|+. ... .....+. .+|.+++++..+ ..+... .+.++.+... .. .++.+++|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~~---~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKL-GN---NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHT-CS---SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhc-cC---CCEEEEEE
Confidence 346889999985 331 2223333 348888888876 222222 2334444332 11 25778999
Q ss_pred CCCCCc
Q 027090 146 GGDDLE 151 (228)
Q Consensus 146 ~~D~~~ 151 (228)
+.+...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 999765
No 487
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.15 E-value=0.0036 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|.|++|+|||+|.+++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.14 E-value=0.0041 Score=49.02 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
.....++|.|++|+|||++.+++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999887654
No 489
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.14 E-value=0.003 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
....++|+|++|+|||||++.|+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998654
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.0036 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
No 491
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.11 E-value=0.0036 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999988643
No 492
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.09 E-value=0.0057 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
....++|.|++|+|||+|.++|...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457888899999999999999754
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.004 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
+..|+|.|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 494
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.0028 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 18 ~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.+..++|.|++|+|||||++.+.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998653
No 495
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.06 E-value=0.0046 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 19 ERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 19 ~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...++|.|++|+|||++.+++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 496
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.06 E-value=0.0035 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 027090 21 TVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 21 ~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998653
No 497
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.06 E-value=0.004 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027090 20 RTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 20 ~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
..|+|.|++|+|||++.++|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 498
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.05 E-value=0.0044 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Q 027090 17 NGERTVVLLGRTGNGKSATGNSI 39 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l 39 (228)
....+|+|+|..|||||||++.|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999999886
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.003 Score=48.80 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (228)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSTlin~l~g~ 42 (228)
...+..|+|.|..||||||+.+.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998754
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.03 E-value=0.0031 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (228)
Q Consensus 17 ~~~~~i~l~G~~g~GKSTlin~l~g~~ 43 (228)
.++..|+|+|++|+|||||.++|.+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 445689999999999999999998763
Done!