BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027093
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W4S|A Chain A, Crystal Structure Of The Proximal Bah Domain Of Polybromo
Length = 174
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGA 79
N + GD V + PA+++ P++ +E++ D + W+YRP E+ +
Sbjct: 24 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE 83
Query: 80 KELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAED-YFCRFEYKAATGGFTPDR 136
KE+F SD+Y+ I GKC V K Y KL EN ED Y C Y A T F +
Sbjct: 84 KEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIK 143
Query: 137 VAVYCKCEMPYNPDDL 152
+ + + P D+
Sbjct: 144 LWTMPVSSVRFVPRDV 159
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 186
V VYC C +PY+ M++C+ CKDWFH SC+G+ EEA +D + C +C
Sbjct: 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 58
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 186
V VYC C +PY+ M++C+ C+DWFH SC+G+ E+A +D + C +C
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 127 AATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 186
++G V VYC C PYN + M++C C+DWFH SC+G+ E A +D + C DC
Sbjct: 1 GSSGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
Query: 187 SS 188
+
Sbjct: 61 EA 62
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187
VYC C PY+ + M++C+ CKDWFH SC+G+ A +D + C +C+
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 198
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAXTVLTP 68
Query: 199 FS 200
+
Sbjct: 69 LT 70
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 198
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 199 FS 200
+
Sbjct: 69 LT 70
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 198
+YC C+ P + + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 199 FS 200
+
Sbjct: 69 LT 70
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH----FLCSDCS 187
D A+YC C P+N + M+ C+ C++WFH C+G++ + L+ ++C +C+
Sbjct: 13 DPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 26 GDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 85
GDCV + P DS KP Y+ARV + D N W+ +++ G ELFL
Sbjct: 116 GDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATS--DPLELFLV 173
Query: 86 DHYDVQSAHTIEGKCTV 102
D + I K V
Sbjct: 174 DECEDMQLSYIHSKVKV 190
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 35 DSDKPPYVARVEKIEADHRNN-------VKVRVRWYYRPEESIGGRRQFHGA--KELFLS 85
D+ +P + R+++I ++N +K+RV +YRPE + + A L+ S
Sbjct: 342 DAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 401
Query: 86 DHYDVQSAHTIEGKCTVH 103
D V ++G+CTV
Sbjct: 402 DEEAVVDFKAVQGRCTVE 419
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 26 GDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 85
GDCV + P DS KP Y+ARV + D N W+ +++ G ELFL
Sbjct: 162 GDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATS--DPLELFLV 219
Query: 86 DHYDVQSAHTIEGKCTV 102
D + I K V
Sbjct: 220 DECEDMQLSYIHSKVKV 236
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 13 SYNIKGTNKVVRP-----------------GDCVLMRPADSDKPPYVARVEKIEADHRNN 55
++NIK ++ V RP D + D+ +P + R+++I ++N
Sbjct: 349 TFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSN 408
Query: 56 -------VKVRVRWYYRPEESIGGRRQFHGA--KELFLSDHYDVQSAHTIEGKCTVH 103
+K+RV +YRPE + + A L+ SD V ++G+CTV
Sbjct: 409 GRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVE 465
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 186
D V CKC + + M+ C+GC W H C+G+ +A FLC C
Sbjct: 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALP-SKFLCFRC 63
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 26 GDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLS 85
GDCV + P DS KP Y+ARV + D + W+ +++ G ELFL
Sbjct: 115 GDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFLV 172
Query: 86 DHYDVQSAHTIEGKCTV 102
+ I K V
Sbjct: 173 GECENMQLSYIHSKVKV 189
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 35 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 83
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 342 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 398
Query: 84 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 132
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 399 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 451
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 26 GDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFL 84
GDCV + P DS KP Y+ARV + D + W+ +++ G ELFL
Sbjct: 34 GDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFL 90
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 35 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 83
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 261 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 317
Query: 84 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 132
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 318 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 370
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 26 GDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFL 84
GDCV + P DS KP Y+ARV + D + W+ +++ G ELFL
Sbjct: 473 GDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFL 529
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 35 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 83
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 700 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 756
Query: 84 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 132
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 757 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 809
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 143 CEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188
C Y D+ + C+ C+ WFH C+ +T A+ + + C CS+
Sbjct: 12 CGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 142 KCEMPYNPDDLMVQCEG-CKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187
C+ P VQC+G C +WFH C+G++ E A+ D ++C +C+
Sbjct: 7 NCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENED-YICINCA 52
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 149 PDD--LMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190
PDD M+ C+ C DW+H C+G+ +++ F C C++ +
Sbjct: 27 PDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWF-CPKCANKI 69
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 143 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 171
C N D + CE C+ WFH C GMT
Sbjct: 9 CRSEVNDDQDAILCEASCQKWFHRECTGMT 38
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 143 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 171
C N D + CE C+ WFH C GMT
Sbjct: 11 CTNEVNDDQDAILCEASCQKWFHRICTGMT 40
>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 65
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 143 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 171
C N D + CE C+ WFH C GMT
Sbjct: 14 CTNEVNDDQDAILCEASCQKWFHRICTGMT 43
>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 67
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 143 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 171
C N D + CE C+ WFH C GMT
Sbjct: 15 CTNEVNDDQDAILCEASCQKWFHRICTGMT 44
>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
Length = 67
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 143 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 171
C N D + CE C+ WFH C GMT
Sbjct: 15 CTNEVNDDQDAILCEASCQKWFHRICTGMT 44
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 106 KNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHP 165
K KLE+ G YF + K T P VY +M + + E KDW +
Sbjct: 55 KALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQ------LCRKENLKDWMNG 108
Query: 166 SCMGMTIEEAKK 177
C TIEE ++
Sbjct: 109 RC---TIEERER 117
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 154 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 186
+ C+ C+ W+H C G+ E + F C C
Sbjct: 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKC 91
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 141 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS-SDVDAKRSL 196
C C ++ D M+ C+ C W H CMG I+ D +LC C ++D +R++
Sbjct: 31 CICGFTHD-DGYMICCDKCSVWQHIDCMG--IDRQHIPDTYLCERCQPRNLDKERAV 84
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 153 MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNTFSVSPSVEAKVRAH 212
MV C C D + + + + H CS C D SL + P+ K+
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-----SLKNANTCPTCRKKINHK 57
Query: 213 MFHFVYV 219
+H +Y+
Sbjct: 58 RYHPIYI 64
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 17/145 (11%)
Query: 54 NNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN 113
+N K R WY + I +R+ A+EL+ + V C + K+E
Sbjct: 89 DNPKERGFWY---DAEISRKRETRTARELYAN----VVLGDDSLNDCRIIFVDEVFKIER 141
Query: 114 VGAEDYFCRFEYKAATGGFTP------DRVAVYCKCEM---PYNPDDLMVQCEGCKDWFH 164
G + +G +R+ C C + +PD ++ C+ C FH
Sbjct: 142 PGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLM-CDECDMAFH 200
Query: 165 PSCMGMTIEEAKKLDHFLCSDCSSD 189
C+ + D + C +C +D
Sbjct: 201 IYCLDPPLSSVPSEDEWYCPECRND 225
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 17/145 (11%)
Query: 54 NNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN 113
+N K R WY + I +R+ A+EL+ + V C + K+E
Sbjct: 105 DNPKERGFWY---DAEISRKRETRTARELYAN----VVLGDDSLNDCRIIFVDEVFKIER 157
Query: 114 VGAEDYFCRFEYKAATGGFTP------DRVAVYCKCEM---PYNPDDLMVQCEGCKDWFH 164
G + +G +R+ C C + +PD ++ C+ C FH
Sbjct: 158 PGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLM-CDECDMAFH 216
Query: 165 PSCMGMTIEEAKKLDHFLCSDCSSD 189
C+ + D + C +C +D
Sbjct: 217 IYCLDPPLSSVPSEDEWYCPECRND 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,400,096
Number of Sequences: 62578
Number of extensions: 309074
Number of successful extensions: 693
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 63
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)