Query 027093
Match_columns 228
No_of_seqs 222 out of 1795
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 1.6E-31 5.3E-36 214.9 10.9 128 5-134 11-141 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 2.5E-24 8.5E-29 210.6 15.0 128 3-134 141-280 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 1.2E-23 4.2E-28 210.0 14.7 126 4-133 453-591 (1330)
4 4dov_A ORC1, origin recognitio 99.9 1.3E-22 4.4E-27 158.1 16.9 125 7-134 20-159 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.8 5.7E-20 1.9E-24 179.9 14.2 126 6-133 320-499 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.8 6E-20 2.1E-24 177.3 11.4 125 6-133 43-178 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 2.5E-18 8.4E-23 172.0 11.4 125 7-133 633-810 (1330)
8 1wep_A PHF8; structural genomi 99.7 7.4E-18 2.5E-22 118.0 4.1 63 129-191 3-65 (79)
9 3kqi_A GRC5, PHD finger protei 99.6 1.6E-17 5.5E-22 115.1 0.0 65 135-199 7-74 (75)
10 2fl7_A Regulatory protein SIR3 99.6 1.4E-15 4.6E-20 125.2 10.9 121 13-134 43-189 (232)
11 1m4z_A Origin recognition comp 99.6 1.3E-15 4.6E-20 125.7 10.6 121 13-134 43-189 (238)
12 1we9_A PHD finger family prote 99.6 5.4E-16 1.8E-20 104.1 3.2 56 136-191 4-60 (64)
13 3o70_A PHD finger protein 13; 99.5 8.1E-15 2.8E-19 99.3 3.0 54 133-189 14-67 (68)
14 3o7a_A PHD finger protein 13 v 99.5 9.1E-15 3.1E-19 94.0 2.6 49 137-188 3-51 (52)
15 1wee_A PHD finger family prote 99.5 1.4E-14 4.8E-19 99.4 2.7 55 135-190 13-67 (72)
16 2kgg_A Histone demethylase jar 99.4 3E-14 1E-18 91.6 2.8 47 140-187 5-52 (52)
17 1wem_A Death associated transc 99.4 9.3E-15 3.2E-19 101.4 -1.2 55 136-191 14-72 (76)
18 1wew_A DNA-binding family prot 99.4 2.6E-14 9E-19 99.5 0.6 55 136-191 14-74 (78)
19 2vpb_A Hpygo1, pygopus homolog 99.4 1.3E-14 4.5E-19 97.3 -1.1 51 138-188 9-65 (65)
20 3kv4_A PHD finger protein 8; e 99.4 1.3E-14 4.4E-19 131.1 -2.4 56 136-191 3-58 (447)
21 3kv5_D JMJC domain-containing 99.4 3.6E-14 1.2E-18 129.8 -0.1 85 133-217 32-123 (488)
22 2rsd_A E3 SUMO-protein ligase 99.4 2E-13 6.8E-18 92.6 2.5 53 136-189 8-65 (68)
23 1wen_A Inhibitor of growth fam 99.3 4.1E-13 1.4E-17 91.6 3.1 53 135-192 13-68 (71)
24 1x4i_A Inhibitor of growth pro 99.3 8.9E-14 3E-18 94.7 -1.1 51 136-191 4-57 (70)
25 2xb1_A Pygopus homolog 2, B-ce 99.3 3E-13 1E-17 99.3 1.1 52 140-191 6-63 (105)
26 3c6w_A P28ING5, inhibitor of g 99.3 3.8E-13 1.3E-17 88.5 0.6 49 136-189 7-58 (59)
27 2g6q_A Inhibitor of growth pro 99.3 5.3E-13 1.8E-17 88.7 0.7 49 136-189 9-60 (62)
28 1weu_A Inhibitor of growth fam 99.3 1.2E-12 4.2E-17 93.2 2.3 51 136-191 34-87 (91)
29 2ri7_A Nucleosome-remodeling f 99.3 4E-13 1.4E-17 107.3 -0.8 56 136-191 6-61 (174)
30 2k16_A Transcription initiatio 99.2 1E-12 3.5E-17 90.7 1.1 55 136-192 16-71 (75)
31 2jmi_A Protein YNG1, ING1 homo 99.2 1.5E-12 5E-17 92.6 1.3 51 135-190 23-77 (90)
32 2vnf_A ING 4, P29ING4, inhibit 99.2 1.2E-12 4.1E-17 86.5 0.5 49 136-189 8-59 (60)
33 3lqh_A Histone-lysine N-methyl 99.2 5.7E-12 2E-16 101.1 1.8 54 138-191 2-65 (183)
34 2lv9_A Histone-lysine N-methyl 99.1 3.3E-11 1.1E-15 87.4 4.1 51 137-190 27-77 (98)
35 3pur_A Lysine-specific demethy 99.1 3.6E-11 1.2E-15 109.6 2.7 57 144-200 49-108 (528)
36 3rsn_A SET1/ASH2 histone methy 98.7 6.1E-09 2.1E-13 82.4 4.1 55 136-190 3-60 (177)
37 1f62_A Transcription factor WS 98.6 1.3E-08 4.4E-13 64.6 1.0 46 142-189 5-50 (51)
38 1xwh_A Autoimmune regulator; P 98.5 5E-08 1.7E-12 65.3 3.2 50 138-192 8-58 (66)
39 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 2.4E-08 8.2E-13 75.6 1.7 40 152-191 1-46 (140)
40 2puy_A PHD finger protein 21A; 98.4 6.1E-08 2.1E-12 63.6 0.5 49 139-192 6-55 (60)
41 2yt5_A Metal-response element- 98.3 1.6E-07 5.6E-12 62.7 2.3 56 138-193 7-65 (66)
42 3asl_A E3 ubiquitin-protein li 98.3 2.1E-07 7.2E-12 63.0 2.8 47 142-189 23-69 (70)
43 2ku3_A Bromodomain-containing 98.3 4.8E-08 1.6E-12 66.3 -0.4 51 137-190 16-67 (71)
44 2l5u_A Chromodomain-helicase-D 98.3 1E-07 3.5E-12 62.8 1.1 49 136-189 9-58 (61)
45 2yql_A PHD finger protein 21A; 98.3 1.6E-07 5.5E-12 60.7 1.9 46 138-188 9-55 (56)
46 2e6r_A Jumonji/ARID domain-con 98.3 9.7E-08 3.3E-12 68.1 0.6 51 139-191 17-68 (92)
47 1mm2_A MI2-beta; PHD, zinc fin 98.2 4.3E-07 1.5E-11 59.8 2.6 49 137-190 8-57 (61)
48 2e6s_A E3 ubiquitin-protein li 98.2 8.2E-07 2.8E-11 61.1 3.7 46 142-188 31-76 (77)
49 2l43_A N-teminal domain from h 98.2 8.4E-08 2.9E-12 67.9 -1.5 53 137-192 25-78 (88)
50 3shb_A E3 ubiquitin-protein li 98.1 1.5E-06 5.3E-11 59.7 3.2 46 142-188 31-76 (77)
51 1wev_A Riken cDNA 1110020M19; 98.1 2.6E-06 8.7E-11 60.2 3.5 55 139-193 18-76 (88)
52 2lri_C Autoimmune regulator; Z 98.0 1.2E-06 4.2E-11 58.5 1.0 46 139-189 14-59 (66)
53 2kwj_A Zinc finger protein DPF 97.9 2.5E-06 8.6E-11 63.1 1.4 49 142-192 63-111 (114)
54 3o36_A Transcription intermedi 97.9 7.1E-06 2.4E-10 65.6 3.9 47 140-191 6-53 (184)
55 3ask_A E3 ubiquitin-protein li 97.9 5.4E-06 1.9E-10 68.1 3.0 47 142-189 179-225 (226)
56 1fp0_A KAP-1 corepressor; PHD 97.9 1.5E-05 5.3E-10 55.9 4.8 51 138-193 25-76 (88)
57 3v43_A Histone acetyltransfera 97.9 6.7E-06 2.3E-10 60.6 3.1 47 142-189 66-112 (112)
58 3u5n_A E3 ubiquitin-protein li 97.9 9E-06 3.1E-10 66.2 4.1 48 139-191 8-56 (207)
59 4gne_A Histone-lysine N-methyl 97.8 5.9E-06 2E-10 60.3 2.3 49 137-191 14-64 (107)
60 2ysm_A Myeloid/lymphoid or mix 97.7 1.3E-05 4.5E-10 58.8 1.8 47 142-190 59-105 (111)
61 4bbq_A Lysine-specific demethy 97.5 1.8E-05 6E-10 58.6 0.9 41 150-190 72-115 (117)
62 2ro1_A Transcription intermedi 97.4 8.6E-05 2.9E-09 59.6 3.4 46 142-192 7-52 (189)
63 2ysm_A Myeloid/lymphoid or mix 97.0 0.00039 1.3E-08 50.8 3.2 44 142-187 12-55 (111)
64 3v43_A Histone acetyltransfera 96.4 0.00051 1.7E-08 50.4 0.1 38 150-187 23-62 (112)
65 2kwj_A Zinc finger protein DPF 96.3 0.0015 5E-08 48.0 2.1 38 150-187 20-59 (114)
66 2lbm_A Transcriptional regulat 95.6 0.00098 3.4E-08 50.9 -1.8 52 135-190 60-118 (142)
67 3ql9_A Transcriptional regulat 94.8 0.0028 9.7E-08 47.5 -1.3 53 135-191 54-113 (129)
68 1iym_A EL5; ring-H2 finger, ub 83.3 0.58 2E-05 28.5 2.0 45 140-189 8-52 (55)
69 1weq_A PHD finger protein 7; s 80.6 1.3 4.5E-05 30.4 3.0 48 137-188 25-78 (85)
70 3zzs_A Transcription attenuati 78.2 4 0.00014 26.0 4.5 47 58-104 13-59 (65)
71 2d8s_A Cellular modulator of i 78.1 0.88 3E-05 30.7 1.5 52 139-193 17-71 (80)
72 2l7p_A Histone-lysine N-methyl 77.0 1.4 4.8E-05 31.2 2.4 37 147-185 22-58 (100)
73 1wil_A KIAA1045 protein; ring 76.2 0.15 5.2E-06 35.0 -2.7 47 140-188 17-75 (89)
74 3zte_A Tryptophan operon RNA-b 76.1 5.5 0.00019 26.3 4.9 47 58-104 21-67 (78)
75 2ect_A Ring finger protein 126 76.1 3.1 0.00011 27.1 3.9 48 140-193 18-65 (78)
76 2ep4_A Ring finger protein 24; 75.8 1.2 4E-05 28.9 1.7 46 140-191 18-63 (74)
77 1gtf_A Trp RNA-binding attenua 75.5 6.3 0.00021 25.6 4.9 47 58-104 17-63 (74)
78 4hcz_A PHD finger protein 1; p 74.7 4.2 0.00014 25.7 3.9 29 22-52 3-31 (58)
79 2lq6_A Bromodomain-containing 74.0 1.5 5E-05 30.2 1.8 32 136-169 15-49 (87)
80 3a1b_A DNA (cytosine-5)-methyl 73.5 0.52 1.8E-05 36.3 -0.7 53 134-190 75-135 (159)
81 2a7y_A Hypothetical protein RV 72.3 3.8 0.00013 27.8 3.5 40 23-63 6-45 (83)
82 1v87_A Deltex protein 2; ring- 72.2 0.71 2.4E-05 32.8 -0.2 39 155-193 57-95 (114)
83 2pv0_B DNA (cytosine-5)-methyl 71.5 0.6 2E-05 41.1 -0.8 52 135-190 90-149 (386)
84 2m0o_A PHD finger protein 1; t 69.3 4.3 0.00015 27.1 3.2 30 20-51 24-53 (79)
85 2ecm_A Ring finger and CHY zin 68.7 0.97 3.3E-05 27.4 -0.1 45 141-190 9-53 (55)
86 2eqj_A Metal-response element- 63.8 9.9 0.00034 24.6 4.0 28 22-51 13-40 (66)
87 2xk0_A Polycomb protein PCL; t 61.1 7.5 0.00026 25.4 3.0 26 21-48 14-39 (69)
88 3llr_A DNA (cytosine-5)-methyl 59.4 5.7 0.00019 30.3 2.7 46 19-66 13-61 (154)
89 2e61_A Zinc finger CW-type PWW 59.1 6.7 0.00023 25.7 2.6 34 149-185 14-49 (69)
90 2gfu_A DNA mismatch repair pro 56.2 8.7 0.0003 28.3 3.2 44 20-65 20-69 (134)
91 2kiz_A E3 ubiquitin-protein li 56.0 2.9 0.0001 26.5 0.4 47 140-192 17-63 (69)
92 2e5p_A Protein PHF1, PHD finge 55.0 20 0.00067 23.2 4.2 30 20-51 7-36 (68)
93 4fu6_A PC4 and SFRS1-interacti 52.7 8.1 0.00028 29.1 2.5 28 21-50 21-48 (153)
94 1joc_A EEA1, early endosomal a 52.1 9.2 0.00031 27.9 2.7 59 131-189 62-122 (125)
95 2dig_A Lamin-B receptor; tudor 49.8 15 0.00053 23.7 3.1 28 21-49 11-38 (68)
96 2yw8_A RUN and FYVE domain-con 49.5 7.9 0.00027 25.9 1.8 60 132-191 13-74 (82)
97 2l8d_A Lamin-B receptor; DNA b 49.3 15 0.00052 23.6 3.0 28 21-49 8-35 (66)
98 1nz9_A Transcription antitermi 47.9 15 0.0005 22.7 2.8 43 22-67 4-46 (58)
99 1khc_A DNA cytosine-5 methyltr 47.0 6.6 0.00023 29.6 1.2 44 19-64 8-54 (147)
100 1ri0_A Hepatoma-derived growth 46.6 6.1 0.00021 28.2 0.9 28 19-48 16-43 (110)
101 2e6z_A Transcription elongatio 46.5 9.2 0.00032 24.0 1.7 40 21-65 6-45 (59)
102 3qby_A Hepatoma-derived growth 45.1 13 0.00043 25.7 2.4 25 22-48 5-29 (94)
103 1x4u_A Zinc finger, FYVE domai 44.4 23 0.00078 23.7 3.5 61 131-191 7-77 (84)
104 2l0b_A E3 ubiquitin-protein li 42.9 3.3 0.00011 28.1 -1.0 46 140-191 43-88 (91)
105 2l89_A PWWP domain-containing 42.3 25 0.00085 24.8 3.6 43 20-64 3-52 (108)
106 1x4j_A Ring finger protein 38; 41.9 5.2 0.00018 25.8 -0.1 47 139-191 25-71 (75)
107 2daq_A WHSC1L1 protein, isofor 41.0 10 0.00036 26.7 1.4 30 18-49 4-33 (110)
108 2ecl_A Ring-box protein 2; RNF 40.7 1.4 4.6E-05 29.5 -3.3 34 153-191 42-75 (81)
109 2ro0_A Histone acetyltransfera 40.1 37 0.0013 23.3 4.1 28 22-52 23-50 (92)
110 2ct0_A Non-SMC element 1 homol 39.5 9.8 0.00034 25.1 1.0 49 137-191 15-63 (74)
111 1faq_A RAF-1; transferase, ser 38.7 24 0.00082 20.9 2.7 32 137-171 13-45 (52)
112 6rxn_A Rubredoxin; electron tr 38.0 13 0.00046 22.2 1.3 36 154-190 5-40 (46)
113 3t7l_A Zinc finger FYVE domain 37.3 19 0.00064 24.5 2.2 59 133-191 15-75 (90)
114 1zbd_B Rabphilin-3A; G protein 35.0 11 0.00037 27.9 0.7 55 138-193 55-111 (134)
115 3p8d_A Medulloblastoma antigen 34.9 36 0.0012 22.0 3.1 36 22-63 6-41 (67)
116 2e5q_A PHD finger protein 19; 34.0 22 0.00076 22.6 1.9 29 21-51 6-34 (63)
117 3bcw_A Uncharacterized protein 33.7 44 0.0015 23.9 3.9 18 18-35 86-103 (123)
118 1vq8_T 50S ribosomal protein L 32.1 50 0.0017 23.9 3.9 36 21-59 41-76 (120)
119 1wfk_A Zinc finger, FYVE domai 31.6 34 0.0012 23.2 2.8 55 138-192 9-66 (88)
120 2opk_A Hypothetical protein; p 31.4 38 0.0013 23.5 3.1 22 14-35 66-89 (112)
121 1o5u_A Novel thermotoga mariti 31.2 48 0.0017 22.7 3.6 22 14-35 62-84 (101)
122 1wgs_A MYST histone acetyltran 30.6 55 0.0019 24.0 4.0 29 21-51 11-39 (133)
123 3j21_U 50S ribosomal protein L 30.3 60 0.0021 23.5 4.0 30 21-52 44-73 (121)
124 2f5k_A MORF-related gene 15 is 28.3 1E+02 0.0035 21.5 4.9 28 21-51 21-48 (102)
125 4rxn_A Rubredoxin; electron tr 28.1 34 0.0012 21.1 2.0 36 154-190 4-46 (54)
126 2yur_A Retinoblastoma-binding 28.0 19 0.00066 23.0 1.0 44 141-190 19-62 (74)
127 1y02_A CARP2, FYVE-ring finger 27.8 16 0.00056 26.5 0.6 51 134-189 15-66 (120)
128 1vyx_A ORF K3, K3RING; zinc-bi 27.6 2.8 9.6E-05 26.5 -3.2 47 142-192 11-59 (60)
129 3p8b_B Transcription antitermi 27.5 45 0.0015 24.7 3.1 43 21-66 90-132 (152)
130 1z2q_A LM5-1; membrane protein 27.0 71 0.0024 21.1 3.8 60 132-191 15-78 (84)
131 3v2d_Y 50S ribosomal protein L 26.8 56 0.0019 23.2 3.3 30 21-52 5-34 (110)
132 3lwc_A Uncharacterized protein 26.7 43 0.0015 23.7 2.7 22 14-35 72-93 (119)
133 1v5n_A PDI-like hypothetical p 26.5 17 0.00056 24.8 0.4 33 140-174 49-82 (89)
134 3nw0_A Non-structural maintena 26.4 15 0.00051 29.9 0.2 49 137-191 180-228 (238)
135 2yuu_A NPKC-delta, protein kin 26.2 88 0.003 20.5 4.1 33 137-170 27-62 (83)
136 4a4f_A SurviVal of motor neuro 26.1 57 0.002 20.4 3.0 29 21-50 7-35 (64)
137 2l9z_A PR domain zinc finger p 25.8 23 0.00077 20.4 0.8 20 151-170 9-28 (39)
138 3oa6_A MALE-specific lethal 3 25.8 1.2E+02 0.0041 21.5 4.9 33 21-53 18-52 (110)
139 2ct2_A Tripartite motif protei 25.4 11 0.00038 24.8 -0.7 51 139-192 16-68 (88)
140 2ea6_A Ring finger protein 4; 25.1 6.8 0.00023 24.5 -1.7 45 142-191 20-67 (69)
141 4hae_A CDY-like 2, chromodomai 25.0 1.5E+02 0.0052 19.5 5.1 30 37-66 21-50 (81)
142 3r8s_U 50S ribosomal protein L 24.9 73 0.0025 22.3 3.6 27 23-51 4-30 (102)
143 2fnf_X Putative RAS effector N 24.1 50 0.0017 21.3 2.5 32 137-170 34-66 (72)
144 2zjr_R 50S ribosomal protein L 23.9 52 0.0018 23.6 2.7 28 22-51 15-42 (115)
145 2d8t_A Dactylidin, ring finger 23.9 8.8 0.0003 24.4 -1.4 43 142-193 20-62 (71)
146 2rnz_A Histone acetyltransfera 23.5 93 0.0032 21.4 3.8 28 22-52 25-52 (94)
147 2zkr_t 60S ribosomal protein L 23.5 60 0.002 24.3 3.0 29 21-51 47-76 (145)
148 2djb_A Polycomb group ring fin 23.5 26 0.00089 22.1 0.9 44 142-193 20-63 (72)
149 2vrw_B P95VAV, VAV1, proto-onc 23.4 40 0.0014 29.0 2.4 36 135-170 354-391 (406)
150 1chc_A Equine herpes virus-1 r 23.3 20 0.00068 22.2 0.3 43 141-191 9-51 (68)
151 2v3b_B Rubredoxin 2, rubredoxi 23.3 43 0.0015 20.6 1.9 14 177-190 33-46 (55)
152 1e8j_A Rubredoxin; iron-sulfur 23.2 41 0.0014 20.5 1.7 13 177-189 33-45 (52)
153 1dx8_A Rubredoxin; electron tr 23.2 49 0.0017 21.5 2.2 38 154-191 8-51 (70)
154 3mjh_B Early endosome antigen 23.2 29 0.00098 19.3 0.9 13 179-191 4-16 (34)
155 1mhn_A SurviVal motor neuron p 22.8 1.4E+02 0.0046 18.2 4.7 28 22-50 3-30 (59)
156 2kn9_A Rubredoxin; metalloprot 22.7 33 0.0011 23.1 1.3 37 154-190 28-70 (81)
157 3vhs_A ATPase wrnip1; zinc fin 22.7 45 0.0015 17.3 1.5 13 150-162 3-15 (29)
158 4axo_A EUTQ, ethanolamine util 22.7 53 0.0018 24.6 2.6 45 14-71 97-141 (151)
159 3u5e_Y L33, YL33, 60S ribosoma 22.2 1E+02 0.0034 22.5 3.9 29 21-51 48-76 (127)
160 2xzl_A ATP-dependent helicase 22.1 32 0.0011 32.9 1.6 21 150-170 22-42 (802)
161 3ask_A E3 ubiquitin-protein li 21.8 2E+02 0.0068 23.1 6.1 44 22-67 2-52 (226)
162 3m9q_A Protein MALE-specific l 21.5 1.4E+02 0.0049 20.7 4.5 36 17-52 14-51 (101)
163 4a0k_B E3 ubiquitin-protein li 21.4 20 0.00068 25.8 0.0 30 157-191 82-111 (117)
164 2ozj_A Cupin 2, conserved barr 21.3 63 0.0022 21.9 2.7 22 14-35 71-92 (114)
165 2pyt_A Ethanolamine utilizatio 21.0 60 0.0021 23.4 2.6 22 14-35 88-109 (133)
166 2lk0_A RNA-binding protein 5; 21.0 83 0.0028 16.9 2.6 14 179-192 4-17 (32)
167 2do3_A Transcription elongatio 21.0 87 0.003 20.3 3.1 27 22-50 17-43 (69)
168 2l6l_A DNAJ homolog subfamily 21.0 33 0.0011 25.5 1.2 28 137-164 111-144 (155)
169 3qii_A PHD finger protein 20; 20.8 69 0.0024 21.7 2.6 37 20-62 19-55 (85)
170 3iz5_Y 60S ribosomal protein L 20.7 1E+02 0.0036 23.1 3.9 29 21-51 47-75 (150)
171 2oqk_A Putative translation in 20.7 63 0.0022 23.1 2.6 25 24-50 72-96 (117)
172 3db3_A E3 ubiquitin-protein li 20.1 2.4E+02 0.0082 21.3 5.8 29 21-51 9-38 (161)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.97 E-value=1.6e-31 Score=214.87 Aligned_cols=128 Identities=27% Similarity=0.435 Sum_probs=102.6
Q ss_pred CCCceeeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecccccCCccccCCCCeEEe
Q 027093 5 KPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFL 84 (228)
Q Consensus 5 ~~~~~~y~s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~ELFl 84 (228)
++++.+|.++.++| .+|++||+|||.+++.+.++|||+|++||++.+|+++++|+|||||+||.++....+.+||||+
T Consensus 11 ~~~r~~y~~~~~~g--~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~ 88 (174)
T 1w4s_A 11 SLHRTYSQDCSFKN--SMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 88 (174)
T ss_dssp -----------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEE
T ss_pred CCCcEEeEEEEECC--EEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEE
Confidence 44556666777776 7999999999999876678999999999999999999999999999999987655567999999
Q ss_pred eCCceeeeccceEeeeEEEeecccccccC---CCCcceEEeeccccccccccC
Q 027093 85 SDHYDVQSAHTIEGKCTVHTFKNYTKLEN---VGAEDYFCRFEYKAATGGFTP 134 (228)
Q Consensus 85 S~~~d~i~~~~I~gkc~V~~~~~~~~~~~---~~~~~Ffcr~~Yd~~~~~f~p 134 (228)
|++.|++|+++|.|||.|+..++|.+..+ ...+.|||++.||+.+++|.+
T Consensus 89 S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~ 141 (174)
T 1w4s_A 89 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKK 141 (174)
T ss_dssp EEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEE
T ss_pred eCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEcc
Confidence 99999999999999999999999976643 345779999999999999985
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.91 E-value=2.5e-24 Score=210.55 Aligned_cols=128 Identities=27% Similarity=0.401 Sum_probs=111.2
Q ss_pred CCCCCceeeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecccccCCccccCCCCeE
Q 027093 3 KTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82 (228)
Q Consensus 3 ~~~~~~~~y~s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~EL 82 (228)
+.+.++.+|.++.++| .+|++||+|+|.++++..++|||+|++||++.+|.++|+|+|||||+||.+++. ++++||
T Consensus 141 k~~~~~~~Y~s~~v~g--~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~~~El 216 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDA--ETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SDPLEL 216 (1002)
T ss_dssp CCBTTEEECSEEEETT--EEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SCTTEE
T ss_pred ccccCceeeeEEEECC--EEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CCCCce
Confidence 3445788899999976 799999999999988777889999999999999999999999999999999988 789999
Q ss_pred EeeCCceeeeccceEeeeEEEeecc---cccc---------cCCCCcceEEeeccccccccccC
Q 027093 83 FLSDHYDVQSAHTIEGKCTVHTFKN---YTKL---------ENVGAEDYFCRFEYKAATGGFTP 134 (228)
Q Consensus 83 FlS~~~d~i~~~~I~gkc~V~~~~~---~~~~---------~~~~~~~Ffcr~~Yd~~~~~f~p 134 (228)
|+|++++.+++++|.|||.|+..+. |... .....++|||++.|++.+++|.+
T Consensus 217 Flsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 217 FLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred EeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 9999999999999999999998654 2111 11235789999999999999984
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.90 E-value=1.2e-23 Score=210.00 Aligned_cols=126 Identities=22% Similarity=0.389 Sum_probs=107.4
Q ss_pred CCCCceeeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecccccCCccccCCCCeEE
Q 027093 4 TKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELF 83 (228)
Q Consensus 4 ~~~~~~~y~s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~d~~~~~~~~~~~~ELF 83 (228)
...++.+|.++.++| .+|++||+|||.+++++.++|||+|++||++.+|..+|+|+|||||+||.+++. ++++|||
T Consensus 453 ~~~~~~~Y~~~~v~g--~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~~rElF 528 (1330)
T 3av4_A 453 IEENRTYYQKVSIDE--EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SDPLELF 528 (1330)
T ss_dssp CC--CEEECSEEEES--SEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SCTTEEE
T ss_pred ccCCceeeeEEEECC--EEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cCCCeEE
Confidence 345788899999987 699999999999887556789999999999999999999999999999998876 7899999
Q ss_pred eeCCceeeeccceEeeeEEEeecc---ccccc----------CCCCcceEEeecccccccccc
Q 027093 84 LSDHYDVQSAHTIEGKCTVHTFKN---YTKLE----------NVGAEDYFCRFEYKAATGGFT 133 (228)
Q Consensus 84 lS~~~d~i~~~~I~gkc~V~~~~~---~~~~~----------~~~~~~Ffcr~~Yd~~~~~f~ 133 (228)
+|+++|.+|+++|.|||.|++.++ |.++. ....++|||++.||+..++|.
T Consensus 529 lS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~ 591 (1330)
T 3av4_A 529 LVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFE 591 (1330)
T ss_dssp EEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEE
T ss_pred EecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccC
Confidence 999999999999999999998665 43221 124467999999999999987
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.90 E-value=1.3e-22 Score=158.12 Aligned_cols=125 Identities=23% Similarity=0.361 Sum_probs=103.9
Q ss_pred CceeeeeEEEcCCC---eEEccCCEEEEccCCCCCCCeEEEEeEEEEc---CCCCEEEEEEEEeecccccCCcccc----
Q 027093 7 GKKDLDSYNIKGTN---KVVRPGDCVLMRPADSDKPPYVARVEKIEAD---HRNNVKVRVRWYYRPEESIGGRRQF---- 76 (228)
Q Consensus 7 ~~~~y~s~~v~g~~---~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~---~~~~~~v~v~WfyRp~d~~~~~~~~---- 76 (228)
...+|+++.++.+| .++++||+|+|.+++. +.||||+|++|+++ ......++|+||+||+|++.+...+
T Consensus 20 ~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~ 98 (163)
T 4dov_A 20 FQQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRS 98 (163)
T ss_dssp TEEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSC
T ss_pred cceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCC
Confidence 46789999996554 8999999999999984 77899999999885 2345889999999999999876543
Q ss_pred CCCCeEEeeCCce---eeeccceEeeeEEEeecccccc--cCCCCcceEEeeccccccccccC
Q 027093 77 HGAKELFLSDHYD---VQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (228)
Q Consensus 77 ~~~~ELFlS~~~d---~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~Ffcr~~Yd~~~~~f~p 134 (228)
.+.+|||++++.+ .+++++|+|+|+|+.++.+..+ +..+.++||.|.++|.+ .|.|
T Consensus 99 ~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~p 159 (163)
T 4dov_A 99 PPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAP 159 (163)
T ss_dssp CCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEE
T ss_pred CCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--ccee
Confidence 3567999999874 7999999999999999777666 34567899999999965 4554
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.82 E-value=5.7e-20 Score=179.89 Aligned_cols=126 Identities=24% Similarity=0.403 Sum_probs=104.7
Q ss_pred CCceeeeeEEEcCCCeEEccCCEEEEccCC-----------------------------------------CCCCCeEEE
Q 027093 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVAR 44 (228)
Q Consensus 6 ~~~~~y~s~~v~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~I~r 44 (228)
.++..|.++..+| .+|++||+|||.++. .+.+++||+
T Consensus 320 ~~~~~~~~~~~~g--~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Igr 397 (1002)
T 3swr_A 320 DSRVLYYSATKNG--ILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGR 397 (1002)
T ss_dssp SSCEEESEEEETT--EEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEE
T ss_pred CCcEEEEEEEECC--EEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeE
Confidence 3566777887754 799999999999932 234789999
Q ss_pred EeEEEEcCCCC-------EEEEEEEEeecccccCCcc--ccCCCCeEEeeCCceeeeccceEeeeEEEeecccccccC--
Q 027093 45 VEKIEADHRNN-------VKVRVRWYYRPEESIGGRR--QFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN-- 113 (228)
Q Consensus 45 I~~i~~~~~~~-------~~v~v~WfyRp~d~~~~~~--~~~~~~ELFlS~~~d~i~~~~I~gkc~V~~~~~~~~~~~-- 113 (228)
|++|+.+.++. ++|+|+|||||+||..+.. ...+.||||+|++.+++|+.+|.|||.|...+++.....
T Consensus 398 I~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~ 477 (1002)
T 3swr_A 398 IKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVY 477 (1002)
T ss_dssp EEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHH
T ss_pred EeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhh
Confidence 99999876654 9999999999999986533 235789999999999999999999999999999875433
Q ss_pred --CCCcceEEeecccccccccc
Q 027093 114 --VGAEDYFCRFEYKAATGGFT 133 (228)
Q Consensus 114 --~~~~~Ffcr~~Yd~~~~~f~ 133 (228)
.+.+.||++..||+.++.|.
T Consensus 478 ~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 478 SMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp HHTSSSEEEEEEEEETTTTEEE
T ss_pred ccCCCCeEEEEEEEeCCCCeee
Confidence 34578888899999999997
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.81 E-value=6e-20 Score=177.29 Aligned_cols=125 Identities=17% Similarity=0.334 Sum_probs=105.6
Q ss_pred CCceeeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecccccCCc-------cccCC
Q 027093 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGR-------RQFHG 78 (228)
Q Consensus 6 ~~~~~y~s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~d~~~~~-------~~~~~ 78 (228)
+++.||.++.|+| ++|++||+|||.++. +.+++||+|.+|+++.+|..+++|+|||||+||..+. ...++
T Consensus 43 ~~~~~~~~~~~~~--~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d 119 (784)
T 4ft4_B 43 KARCHYRSAKVDN--VVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119 (784)
T ss_dssp CEEEECSEEEETT--EEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCC
T ss_pred ccceeeeeeeECC--EEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccc
Confidence 4688999999986 899999999999865 5788999999999999999999999999999997653 23468
Q ss_pred CCeEEeeCCceeeeccceEeeeEEEeecccccccC----CCCcceEEeecccccccccc
Q 027093 79 AKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN----VGAEDYFCRFEYKAATGGFT 133 (228)
Q Consensus 79 ~~ELFlS~~~d~i~~~~I~gkc~V~~~~~~~~~~~----~~~~~Ffcr~~Yd~~~~~f~ 133 (228)
.+|||+|++.+++++++|.|||+|+.......... .....|||+..|.....+|.
T Consensus 120 ~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 120 PRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp TTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred cceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCcc
Confidence 89999999999999999999999998765433322 22456999999988877765
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.75 E-value=2.5e-18 Score=172.00 Aligned_cols=125 Identities=24% Similarity=0.435 Sum_probs=104.0
Q ss_pred CceeeeeEEEcCCCeEEccCCEEEEccCC-----------------------------------------CCCCCeEEEE
Q 027093 7 GKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVARV 45 (228)
Q Consensus 7 ~~~~y~s~~v~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~I~rI 45 (228)
+...|.+|..+| ++|++||+|||.++. .+.+++||+|
T Consensus 633 ~~~~Y~~~~~~g--~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI 710 (1330)
T 3av4_A 633 GRVYCSSITKNG--VVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRI 710 (1330)
T ss_dssp SSEEEEEEEETT--EEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEE
T ss_pred CceeeeEEEECC--EEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEE
Confidence 566787887765 899999999998762 1356799999
Q ss_pred eEEEEcCC------CCEEEEEEEEeecccccCCcc--ccCCCCeEEeeCCceeeeccceEeeeEEEeeccccccc----C
Q 027093 46 EKIEADHR------NNVKVRVRWYYRPEESIGGRR--QFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLE----N 113 (228)
Q Consensus 46 ~~i~~~~~------~~~~v~v~WfyRp~d~~~~~~--~~~~~~ELFlS~~~d~i~~~~I~gkc~V~~~~~~~~~~----~ 113 (228)
.+||...+ +.++|+|+|||||+||.++.. ..++.||||+|++.+++|++.|.|||.|....++.... .
T Consensus 711 ~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~ 790 (1330)
T 3av4_A 711 KEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQ 790 (1330)
T ss_dssp EECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHH
T ss_pred EEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccccccc
Confidence 99998654 579999999999999987632 24689999999999999999999999999998876531 2
Q ss_pred CCCcceEEeecccccccccc
Q 027093 114 VGAEDYFCRFEYKAATGGFT 133 (228)
Q Consensus 114 ~~~~~Ffcr~~Yd~~~~~f~ 133 (228)
.+.+.|||+..||+.++.|.
T Consensus 791 ~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 791 GGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp TSTTEEEESCEEETTTTEEE
T ss_pred CCCCeEEEEEEecccCCeec
Confidence 34689999999999999886
No 8
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.70 E-value=7.4e-18 Score=117.95 Aligned_cols=63 Identities=40% Similarity=0.942 Sum_probs=57.0
Q ss_pred cccccCCCceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 129 TGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 129 ~~~f~p~~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
++.|.++.+.+||+|+++++++++||+||.|+.|||..||+++......++.|+|+.|..+..
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 567888899999999999988899999999999999999999988776678999999998764
No 9
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.64 E-value=1.6e-17 Score=115.08 Aligned_cols=65 Identities=38% Similarity=0.960 Sum_probs=54.6
Q ss_pred CCceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc---ccccCCCC
Q 027093 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLNTF 199 (228)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~k~~~~~~ 199 (228)
+..++||+|+++++++++||+|+.|+.|||..||+++...+..++.|+|+.|..+.+ +|+++|++
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~k~k~~~~ 74 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWH 74 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCBCSCCCCC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCCeEeeccccC
Confidence 467899999999888899999999999999999999988766668999999997754 34445543
No 10
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.63 E-value=1.4e-15 Score=125.23 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=96.3
Q ss_pred eEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcC-CCCEEEEEEEEeecccccC-------Ccc--------cc
Q 027093 13 SYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF 76 (228)
Q Consensus 13 s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~-~~~~~v~v~WfyRp~d~~~-------~~~--------~~ 76 (228)
.+.-..+|.++++||.|.|..+. .+.+.++.|.+|.... +.-+.+.|.||+|..|+.. .+. .+
T Consensus 43 ~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~ 121 (232)
T 2fl7_A 43 FLKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEF 121 (232)
T ss_dssp EEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHH
T ss_pred EEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhh
Confidence 46566789999999999998875 4677788888998766 5569999999999999864 222 23
Q ss_pred --------CCCCeEEeeCCceeeeccceEeeeEEEeecccccc--cCCCCcceEEeeccccccccccC
Q 027093 77 --------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (228)
Q Consensus 77 --------~~~~ELFlS~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~Ffcr~~Yd~~~~~f~p 134 (228)
...+|||+|.+.+.|-+.+|+++|+|++.++|..+ +.....+||||+++|+....|.+
T Consensus 122 ~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (232)
T 2fl7_A 122 YKDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVP 189 (232)
T ss_dssp HHHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEE
T ss_pred hhhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCcccc
Confidence 68999999999999999999999999999999876 44567899999999998777875
No 11
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.63 E-value=1.3e-15 Score=125.69 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=102.3
Q ss_pred eEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcC-CCCEEEEEEEEeecccccC-------Ccc--------cc
Q 027093 13 SYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF 76 (228)
Q Consensus 13 s~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~-~~~~~v~v~WfyRp~d~~~-------~~~--------~~ 76 (228)
.+.-..+|.++++||.|.|..+. .+.+.++.|.+|.... +.-+.+.|.||+|..|+.. .+. .+
T Consensus 43 ~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~ 121 (238)
T 1m4z_A 43 YLKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNY 121 (238)
T ss_dssp EEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHH
T ss_pred EEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhh
Confidence 46666789999999999998875 4677889999998876 5568999999999999864 222 23
Q ss_pred --------CCCCeEEeeCCceeeeccceEeeeEEEeecccccc--cCCCCcceEEeeccccccccccC
Q 027093 77 --------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 134 (228)
Q Consensus 77 --------~~~~ELFlS~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~Ffcr~~Yd~~~~~f~p 134 (228)
...+|||+|.+.+.|-+.+|+++|+|++.++|..+ +.....+||||+++|+....|.+
T Consensus 122 ~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (238)
T 1m4z_A 122 YNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVD 189 (238)
T ss_dssp HHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEE
T ss_pred hhhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCcccc
Confidence 68999999999999999999999999999999866 44567899999999998777875
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.58 E-value=5.4e-16 Score=104.11 Aligned_cols=56 Identities=27% Similarity=0.771 Sum_probs=49.5
Q ss_pred Cceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
....+| +|+++++++++||+|+.|+.|||..||+++...++.++.|+|+.|..+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 467899 99999988899999999999999999999987776668999999987543
No 13
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.49 E-value=8.1e-15 Score=99.35 Aligned_cols=54 Identities=26% Similarity=0.695 Sum_probs=45.9
Q ss_pred cCCCceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 133 TPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 133 ~p~~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
..+...++|+|+++++ +++||+|+.|+.|||..|||++...+ ++.|+|+.|..+
T Consensus 14 ~~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~--~~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSC--CSSCCCHHHHTC
T ss_pred CCCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcccC--CCcEECCCCCCC
Confidence 3456789999999876 77999999999999999999987643 378999999764
No 14
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.48 E-value=9.1e-15 Score=94.00 Aligned_cols=49 Identities=29% Similarity=0.815 Sum_probs=42.8
Q ss_pred ceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccc
Q 027093 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (228)
Q Consensus 137 ~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (228)
..++|+|+++++ +++||+|+.|+.|||..|||++..++ ++.|+|+.|..
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~--~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGC--CSSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcccC--CCcEECcCCCC
Confidence 367999999876 78999999999999999999987643 37899999975
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.47 E-value=1.4e-14 Score=99.41 Aligned_cols=55 Identities=33% Similarity=0.771 Sum_probs=46.8
Q ss_pred CCceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
+.+.++|+|+++++.+.+||+|+.|..|||..||+++.... .++.|+|+.|..+.
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~-~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADA-LPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC-CCSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCcccc-CCCcEECCCccCCC
Confidence 46789999999987667899999999999999999986543 34799999998744
No 16
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.44 E-value=3e-14 Score=91.56 Aligned_cols=47 Identities=34% Similarity=0.970 Sum_probs=41.1
Q ss_pred eecCCCCCCCCCceEECC-CCCceecCCCCCCChhhhCCCCeEEccccc
Q 027093 140 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~-~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 187 (228)
.|+|++|++++.+||+|| .|++|||..|||++...+.. ..|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~-~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAEN-EDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHH-SCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCC-CCEECCCCC
Confidence 579999998889999999 89999999999999776533 789999984
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.41 E-value=9.3e-15 Score=101.36 Aligned_cols=55 Identities=29% Similarity=0.935 Sum_probs=46.3
Q ss_pred CceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhC----CCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK----KLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~----~~~~~~C~~C~~~~~ 191 (228)
...+||+|+++++ +++||+|+.|+.|||..||+++...++ ....|+|+.|..+.+
T Consensus 14 ~~~~~C~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 14 PNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TTCCCSTTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCEEECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4579999999986 679999999999999999999976542 236899999987654
No 18
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.40 E-value=2.6e-14 Score=99.54 Aligned_cols=55 Identities=27% Similarity=0.628 Sum_probs=47.0
Q ss_pred CceeeecCCCCCCCCCceEECC--CCCceecCCCCCCChhhh----CCCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEA----KKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~--~C~~w~H~~Cv~~~~~~~----~~~~~~~C~~C~~~~~ 191 (228)
.+.++|+|+++. .+++||+|| .|..|||..|||++...+ +.++.|+|+.|..+..
T Consensus 14 ~~~~~CiC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCCSSCCCC-CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEeECCCcC-CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 578999999985 478999999 999999999999987764 3457999999987544
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.40 E-value=1.3e-14 Score=97.35 Aligned_cols=51 Identities=31% Similarity=0.644 Sum_probs=44.0
Q ss_pred eeeecCCCCCCCCCceEECC-CCCceecCCCCCCChhhhCCCC-----eEEcccccc
Q 027093 138 AVYCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLD-----HFLCSDCSS 188 (228)
Q Consensus 138 ~~~C~C~~~~~~~~~mi~C~-~C~~w~H~~Cv~~~~~~~~~~~-----~~~C~~C~~ 188 (228)
...++|++|++++.+||+|| .|++|||..|||++...++.+. .|+|+.|..
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 44569999999999999999 9999999999999987655443 999999963
No 20
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.39 E-value=1.3e-14 Score=131.13 Aligned_cols=56 Identities=39% Similarity=1.041 Sum_probs=51.2
Q ss_pred CceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
..++||+|++|++++++||+||.|+.|||+.|||++...+..++.|+|+.|..+.+
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 46899999999988899999999999999999999988877778999999998765
No 21
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.38 E-value=3.6e-14 Score=129.80 Aligned_cols=85 Identities=32% Similarity=0.703 Sum_probs=63.4
Q ss_pred cCCCceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc---ccccCCCCC--C-CCCc-
Q 027093 133 TPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLNTFS--V-SPSV- 205 (228)
Q Consensus 133 ~p~~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~k~~~~~~~--~-~~~~- 205 (228)
.++...+||+|+++++++++||+||.|+.|||..|||++...++.++.|+|+.|....+ .|++++.++ . .++.
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~k~~~~~~r~Dy~~~~~g 111 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDG 111 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEECCCCCSSSSSTTSCCSS
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCcchhccccccccccccccccC
Confidence 45678999999999988999999999999999999999988876778999999997653 333333222 1 1122
Q ss_pred hhhhccceeeeE
Q 027093 206 EAKVRAHMFHFV 217 (228)
Q Consensus 206 ~~~~~~~~~~~~ 217 (228)
..++++|.++|+
T Consensus 112 skpvq~gs~sFi 123 (488)
T 3kv5_D 112 SKPVQAGTRTFI 123 (488)
T ss_dssp CSCCCTTSHHHH
T ss_pred cCcccccchhHH
Confidence 223667776654
No 22
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.36 E-value=2e-13 Score=92.57 Aligned_cols=53 Identities=28% Similarity=0.660 Sum_probs=43.3
Q ss_pred CceeeecCCCCCCCCCceEECCC--CCceecCCCCCCChhhhCC---CCeEEccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEG--CKDWFHPSCMGMTIEEAKK---LDHFLCSDCSSD 189 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~--C~~w~H~~Cv~~~~~~~~~---~~~~~C~~C~~~ 189 (228)
...++|+|+.+.+ +++||+|+. |..|||..|||++...... +++|+|+.|+.+
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 4678999998765 679999995 9999999999997655433 358999999753
No 23
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.34 E-value=4.1e-13 Score=91.64 Aligned_cols=53 Identities=28% Similarity=0.858 Sum_probs=44.0
Q ss_pred CCceeeecCCCCCCCCCceEECCC--CC-ceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 135 DRVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~mi~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
.....||+|+++.+ ++||+||. |. +|||..||+++..+. ..|+|+.|..+...
T Consensus 13 ~~~~~~C~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~---g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 13 PNEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESGP 68 (71)
T ss_dssp TTSCCCSTTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCS---SCCCCTTTSSCSSS
T ss_pred CCCCCEEECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCC---CCEECCCCCccccc
Confidence 35788999999864 68999999 77 899999999986653 57999999876654
No 24
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=8.9e-14 Score=94.69 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=42.8
Q ss_pred CceeeecCCCCCCCCCceEECCCCC---ceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
...+||+|+++. +++||+||.|+ +|||..||+++..+ ...|+|+.|.....
T Consensus 4 ~~~~yC~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p---~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAP---KGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCSTTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCC---SSCCCCHHHHHHHH
T ss_pred CCCeEEEcCCCC--CCCEeEeCCCCCCccCCcccccccCcCC---CCCEECCCCCcccc
Confidence 468899999984 45999999974 99999999998754 36899999987654
No 25
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.31 E-value=3e-13 Score=99.32 Aligned_cols=52 Identities=31% Similarity=0.680 Sum_probs=44.9
Q ss_pred eecCCCCCCCCCceEECC-CCCceecCCCCCCChhhhCCC-----CeEEccccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKL-----DHFLCSDCSSDVD 191 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~-~C~~w~H~~Cv~~~~~~~~~~-----~~~~C~~C~~~~~ 191 (228)
..+|++|+++++.||+|+ .|++|||..|||++....+.+ ..|+|+.|..+..
T Consensus 6 C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 348999998889999998 999999999999998665444 7999999998654
No 26
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.29 E-value=3.8e-13 Score=88.54 Aligned_cols=49 Identities=27% Similarity=0.858 Sum_probs=41.0
Q ss_pred CceeeecCCCCCCCCCceEECCC--CC-ceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
....||+|+++. +++||+||. |. +|||..|||++..+. ..|+|+.|..+
T Consensus 7 ~e~~yC~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~---~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPK---GKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHCC
T ss_pred CCCcEEECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCC---CCEECcCccCc
Confidence 578999999985 468999999 77 899999999987654 57999999763
No 27
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.27 E-value=5.3e-13 Score=88.66 Aligned_cols=49 Identities=31% Similarity=0.882 Sum_probs=40.6
Q ss_pred CceeeecCCCCCCCCCceEECCC--CC-ceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
...+||+|+++. +++||+||. |. +|||+.||+++..+. ..|+|+.|..+
T Consensus 9 ~e~~yC~C~~~~--~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~---~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYCLCNQVS--YGEMIGCDNEQCPIEWFHFSCVSLTYKPK---GKWYCPKCRGD 60 (62)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHTC
T ss_pred CCCcEEECCCCC--CCCeeeeeCCCCCcccEecccCCcCcCCC---CCEECcCcccC
Confidence 468999999985 468999999 55 999999999986543 68999999764
No 28
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.26 E-value=1.2e-12 Score=93.20 Aligned_cols=51 Identities=29% Similarity=0.894 Sum_probs=42.9
Q ss_pred CceeeecCCCCCCCCCceEECCC--CC-ceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
....||+|+++.+ ++||+||. |. +|||..||+++..+. ..|+|+.|..+..
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~---g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCC---SSCCCTTTCCCCS
T ss_pred CCCcEEECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCC---CCEECcCccCcCC
Confidence 5789999999864 68999999 76 899999999987553 5799999987554
No 29
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.25 E-value=4e-13 Score=107.25 Aligned_cols=56 Identities=30% Similarity=0.966 Sum_probs=49.6
Q ss_pred CceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
....+|+|++++++++.||+||.|..|||..|+|++..+.+..+.|+|+.|.....
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 46789999999888899999999999999999999987766668999999998664
No 30
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.25 E-value=1e-12 Score=90.71 Aligned_cols=55 Identities=24% Similarity=0.823 Sum_probs=45.6
Q ss_pred Cceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
....+| +|+++.+ ++.||+||.|..|||..||+++...... ..|+|+.|..+...
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEE-MQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSS-SCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCC-CCEEChhccCchhh
Confidence 456789 9999875 5689999999999999999998765533 68999999987553
No 31
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.23 E-value=1.5e-12 Score=92.62 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=41.7
Q ss_pred CCceeeecCCCCCCCCCceEECCCCC---ceecCCCCCCChhhhCCCCeEEccc-ccccc
Q 027093 135 DRVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSD-CSSDV 190 (228)
Q Consensus 135 ~~~~~~C~C~~~~~~~~~mi~C~~C~---~w~H~~Cv~~~~~~~~~~~~~~C~~-C~~~~ 190 (228)
....+||+|+++.+ +.||+||.|+ +|||+.|||++..+. ..|+|+. |....
T Consensus 23 ~~~~~yCiC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~---~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPK---GKWYCSKDCKEIA 77 (90)
T ss_dssp -CCSCCSTTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTT---SCCCSSHHHHHHH
T ss_pred CCCCcEEEeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCC---CCccCChhhcchh
Confidence 35688999999854 5799999977 999999999987654 5899999 87543
No 32
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.22 E-value=1.2e-12 Score=86.45 Aligned_cols=49 Identities=31% Similarity=0.927 Sum_probs=40.3
Q ss_pred CceeeecCCCCCCCCCceEECCC--CC-ceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~--C~-~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
....||+|+++. ++.||+||. |. +|||+.||+++..+. ..|+|+.|..+
T Consensus 8 ~e~~~C~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~---g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYCLCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQE 59 (60)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHC-
T ss_pred CCCCEEECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCC---CCEECcCccCc
Confidence 568999999985 478999999 65 899999999987653 57999999763
No 33
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.16 E-value=5.7e-12 Score=101.14 Aligned_cols=54 Identities=30% Similarity=0.789 Sum_probs=44.0
Q ss_pred eeee-cCCCCCCCCCc---eEECCCCCceecCCCCCCChhhhCCC------CeEEccccccccc
Q 027093 138 AVYC-KCEMPYNPDDL---MVQCEGCKDWFHPSCMGMTIEEAKKL------DHFLCSDCSSDVD 191 (228)
Q Consensus 138 ~~~C-~C~~~~~~~~~---mi~C~~C~~w~H~~Cv~~~~~~~~~~------~~~~C~~C~~~~~ 191 (228)
..+| +|+++|++++. ||+||.|+.|||+.|+|++...++.+ ..|+|+.|..+.+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3578 79999988764 99999999999999999987543322 3799999998654
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.12 E-value=3.3e-11 Score=87.37 Aligned_cols=51 Identities=29% Similarity=0.786 Sum_probs=42.6
Q ss_pred ceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 137 ~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
..+.|+|+.+.+ ++.||+|+.|..|||..|++++...+ ++.|+|+.|..+.
T Consensus 27 d~vrCiC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~--p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 27 DVTRCICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHI--PDTYLCERCQPRN 77 (98)
T ss_dssp CBCCCTTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSC--CSSBCCTTTSSSC
T ss_pred CCEEeECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCC--CCCEECCCCcCCC
Confidence 467899999875 67999999999999999999976543 3579999997543
No 35
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=99.07 E-value=3.6e-11 Score=109.61 Aligned_cols=57 Identities=19% Similarity=0.525 Sum_probs=46.5
Q ss_pred CCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc---ccccCCCCC
Q 027093 144 EMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLNTFS 200 (228)
Q Consensus 144 ~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~k~~~~~~~ 200 (228)
..+.+++.+||+||.|+.|||+.|||++...++.++.|+|+.|....+ +|+..+++.
T Consensus 49 ~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~~k~~~~~~r 108 (528)
T 3pur_A 49 HHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHR 108 (528)
T ss_dssp TTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSCEECCCCCTTS
T ss_pred ccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCCCcceeeccCccc
Confidence 334568899999999999999999999998888889999999997654 444455544
No 36
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.73 E-value=6.1e-09 Score=82.44 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=38.4
Q ss_pred CceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhh---CCCCeEEcccccccc
Q 027093 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA---KKLDHFLCSDCSSDV 190 (228)
Q Consensus 136 ~~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~---~~~~~~~C~~C~~~~ 190 (228)
....||.|+.+.+.+..|+||..|.+|||.+|+....... ..-..|+|..|....
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 4577999999999999999999999999999998643222 123589999998753
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.55 E-value=1.3e-08 Score=64.65 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=36.0
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
+|+++.+ ++.|+.||.|..|||..|++.+...... ..|+|+.|...
T Consensus 5 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 7887654 5689999999999999999765443322 58999999763
No 38
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.52 E-value=5e-08 Score=65.32 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=37.9
Q ss_pred eeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 138 ~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
..+| +|+.. +.|+.||.|..|||..|++.+...... ..|+|+.|..+...
T Consensus 8 ~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 8 EDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPS-GTWRCSSCLQATVQ 58 (66)
T ss_dssp CCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCS-SCCCCHHHHHTCCC
T ss_pred CCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCC-CCeECccccCcccc
Confidence 3445 78853 579999999999999999965443323 68999999876553
No 39
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.51 E-value=2.4e-08 Score=75.65 Aligned_cols=40 Identities=25% Similarity=0.680 Sum_probs=30.9
Q ss_pred ceEECCCCCceecCCCCCCChh------hhCCCCeEEccccccccc
Q 027093 152 LMVQCEGCKDWFHPSCMGMTIE------EAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 152 ~mi~C~~C~~w~H~~Cv~~~~~------~~~~~~~~~C~~C~~~~~ 191 (228)
.||+||.|++|||..|++++.. .......|.|+.|..+..
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 4999999999999999999863 211123699999987543
No 40
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.36 E-value=6.1e-08 Score=63.62 Aligned_cols=49 Identities=18% Similarity=0.687 Sum_probs=37.1
Q ss_pred eee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 139 ~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
.+| +|++. +.|+.||.|..|||..|++.+...... ..|+|+.|......
T Consensus 6 ~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 6 DFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQDQMLK 55 (60)
T ss_dssp SSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCC-SCCCCHHHHHHHHH
T ss_pred CCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCC-CceEChhccChhhc
Confidence 345 67753 589999999999999999965443322 58999999876543
No 41
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.34 E-value=1.6e-07 Score=62.67 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=41.3
Q ss_pred eeeecCCCCCC-CCCceEECCCCCceecCCCCCCChhh--hCCCCeEEccccccccccc
Q 027093 138 AVYCKCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEE--AKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 138 ~~~C~C~~~~~-~~~~mi~C~~C~~w~H~~Cv~~~~~~--~~~~~~~~C~~C~~~~~~k 193 (228)
....+|+.... .++.|+.|+.|..+||..|++++... ......|+|+.|......|
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 34448887642 35799999999999999999986432 1112589999999876654
No 42
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.34 E-value=2.1e-07 Score=62.96 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=36.1
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
+|++..+ ++.|+.||.|..+||..|++.+.........|+|+.|..+
T Consensus 23 ~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5666543 6799999999999999999966544333238999999863
No 43
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.34 E-value=4.8e-08 Score=66.33 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=39.9
Q ss_pred ceeeecCCCCC-CCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 137 VAVYCKCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 137 ~~~~C~C~~~~-~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
.....+|++.. ..++.|+.||.|..|||..|++++..+. ..|+|+.|..+.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~---g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE---GQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCS---SCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCC---CCcCCccCcCcC
Confidence 34455898765 3467999999999999999999975322 589999998754
No 44
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.33 E-value=1e-07 Score=62.76 Aligned_cols=49 Identities=22% Similarity=0.714 Sum_probs=37.9
Q ss_pred Cceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
....+| +|++ ++.|+.||.|..|||..|++++...... ..|+|+.|...
T Consensus 9 ~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCC-CceECcccccc
Confidence 345567 5886 3589999999999999999986443322 58999999864
No 45
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.6e-07 Score=60.73 Aligned_cols=46 Identities=20% Similarity=0.746 Sum_probs=35.3
Q ss_pred eeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccc
Q 027093 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (228)
Q Consensus 138 ~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (228)
..+| +|+.. +.|+.|+.|..|||..|++.+...... ..|+|+.|..
T Consensus 9 ~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCC-CceEChhhhC
Confidence 4456 68863 589999999999999999965443322 5899999964
No 46
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=9.7e-08 Score=68.13 Aligned_cols=51 Identities=25% Similarity=0.602 Sum_probs=39.7
Q ss_pred eee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 139 ~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
..| +|++..+ ...|+.||.|..|||..|++++...... ..|+|+.|.....
T Consensus 17 ~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 17 YICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPR-GIWRCPKCILAEC 68 (92)
T ss_dssp CCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCS-SCCCCHHHHHHHH
T ss_pred CCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCC-CCcCCccCcCccc
Confidence 345 8988754 5689999999999999999966543322 5899999987654
No 47
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.25 E-value=4.3e-07 Score=59.76 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=37.1
Q ss_pred ceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 137 ~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
...+| +|+. .+.|+.||.|..+||..|++.+...... ..|+|+.|..+.
T Consensus 8 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCS-SCCCCTTTTTTC
T ss_pred CCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCC-CccCChhhcCch
Confidence 34456 6774 3589999999999999999976444323 589999998754
No 48
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=8.2e-07 Score=61.15 Aligned_cols=46 Identities=15% Similarity=0.566 Sum_probs=35.7
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (228)
+|++.. .++.|+.||.|..+||..|++.+.........|+|+.|..
T Consensus 31 vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 677654 3679999999999999999997654433323899999975
No 49
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.22 E-value=8.4e-08 Score=67.88 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=41.3
Q ss_pred ceeeecCCCCC-CCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 137 VAVYCKCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 137 ~~~~C~C~~~~-~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
....++|+... ..++.|+.||.|..|||..|++++..+. ..|+|+.|......
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~---g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE---GQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCS---SCCCCHHHHHHTTS
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCC---CceECccccCccch
Confidence 44556998765 2356999999999999999999975322 58999999876554
No 50
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.11 E-value=1.5e-06 Score=59.73 Aligned_cols=46 Identities=22% Similarity=0.590 Sum_probs=34.9
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (228)
+|++..+ .+.|+.||.|..+||..|++.+.......+.|+|+.|+.
T Consensus 31 vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred ccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5666543 568999999999999999997655443434499999975
No 51
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.05 E-value=2.6e-06 Score=60.18 Aligned_cols=55 Identities=15% Similarity=0.498 Sum_probs=41.2
Q ss_pred eeecCCCCCCC-CCceEECCCCCceecCCCCCCChhh---hCCCCeEEccccccccccc
Q 027093 139 VYCKCEMPYNP-DDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 139 ~~C~C~~~~~~-~~~mi~C~~C~~w~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~~~k 193 (228)
...+|+...++ ++.|+.||.|...||..|++.+... ......|+|+.|......+
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 34488876543 4789999999999999999987542 1122589999999876643
No 52
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.00 E-value=1.2e-06 Score=58.46 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=35.0
Q ss_pred eeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 139 ~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
..-+|++ ++.|+.||.|..+||..|++.+...... ..|+|+.|...
T Consensus 14 ~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPG-TGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCS-SSCCCTTTTTC
T ss_pred CcCCCCC----CCeEEECCCCCCceecccCCCccCcCCC-CCEECccccCC
Confidence 3447874 3569999999999999999876544323 57999999753
No 53
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.92 E-value=2.5e-06 Score=63.11 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=38.1
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
+|++..+ ++.|+.||.|..+||..|++.+...... ..|+|+.|......
T Consensus 63 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 63 LCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPE-GSWSCHLCWELLKE 111 (114)
T ss_dssp TTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCS-SCCCCHHHHHHHHH
T ss_pred cccccCC-CCceEEcCCCCccccccccCCCccCCCC-CCeECccccchhhc
Confidence 6777653 6789999999999999999975444323 58999999876543
No 54
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.90 E-value=7.1e-06 Score=65.57 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=35.9
Q ss_pred ee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 140 ~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
+| +|+++ +.++.||.|..+||..|++.+...... ..|+|+.|.....
T Consensus 6 ~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~-~~W~C~~C~~~~~ 53 (184)
T 3o36_A 6 WCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPS-GEWICTFCRDLSK 53 (184)
T ss_dssp SCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred ccccCCCC----CeeeecCCCCcccCccccCCCCCCCCC-CCEECccccCccc
Confidence 34 68743 469999999999999999776544323 5799999997654
No 55
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.88 E-value=5.4e-06 Score=68.09 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=31.6
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
+|++..+ ++.|+.||.|..+||..|++.+.........|+|+.|...
T Consensus 179 vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 179 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5666543 5789999999999999999976544333238999999753
No 56
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.88 E-value=1.5e-05 Score=55.95 Aligned_cols=51 Identities=29% Similarity=0.635 Sum_probs=38.5
Q ss_pred eeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 138 ~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
..+| +|++. +.++.||.|...||..|+..+...... ..|+|+.|......|
T Consensus 25 ~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 25 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCS-SSCCCCSCCCCCSSC
T ss_pred CCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcC-CCcCCccccCCCccc
Confidence 3455 67753 479999999999999999665443323 589999999877665
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.87 E-value=6.7e-06 Score=60.60 Aligned_cols=47 Identities=23% Similarity=0.572 Sum_probs=36.7
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
+|+.....++.|+.|+.|..+||..|+..+...... ..|+|+.|..+
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~-~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICRPR 112 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS-SCCCCTTTSCC
T ss_pred cccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC-CCeECCCCCCc
Confidence 677765556789999999999999999766444323 58999999753
No 58
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.87 E-value=9e-06 Score=66.24 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=36.6
Q ss_pred eee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 139 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 139 ~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
.+| +|+++ +.++.||.|..+||..|++.+...... ..|+|+.|.....
T Consensus 8 ~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 8 DWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPS-GDWICTFCRDIGK 56 (207)
T ss_dssp SSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCC-CCEEeCceeCccc
Confidence 345 78753 469999999999999999776543323 5799999997654
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=97.85 E-value=5.9e-06 Score=60.34 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=36.6
Q ss_pred ceeeecCCCCCCCCCceEECC--CCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 137 VAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 137 ~~~~C~C~~~~~~~~~mi~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
...+|.+-+ .++.||.|| .|..|||..|+++...+. ..|+|+.|.-..-
T Consensus 14 ~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~---g~W~Cp~c~C~~C 64 (107)
T 4gne_A 14 HEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPPY---GKWECPWHQCDEC 64 (107)
T ss_dssp SCSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCCS---SCCCCGGGBCTTT
T ss_pred CCCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCCC---CCEECCCCCCCcC
Confidence 456786443 256899999 899999999999765442 5799998875443
No 60
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.66 E-value=1.3e-05 Score=58.77 Aligned_cols=47 Identities=19% Similarity=0.620 Sum_probs=36.9
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
+|++..+ +..|+.|+.|.++||..|++.+...... ..|+|+.|....
T Consensus 59 ~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~ 105 (111)
T 2ysm_A 59 NCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPT-NGWKCKNCRICI 105 (111)
T ss_dssp TTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCS-SCCCCHHHHCCS
T ss_pred ccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCC-CCcCCcCCcCcC
Confidence 6887654 5689999999999999999976544323 589999997743
No 61
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.53 E-value=1.8e-05 Score=58.57 Aligned_cols=41 Identities=22% Similarity=0.609 Sum_probs=31.0
Q ss_pred CCceEECCCCCceecCCCCCCChhh---hCCCCeEEcccccccc
Q 027093 150 DDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDV 190 (228)
Q Consensus 150 ~~~mi~C~~C~~w~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~ 190 (228)
+..|++|+.|..|||..|+++.... .+.++.|.|+.|..+.
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 4579999999999999999986432 2335689999998754
No 62
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.40 E-value=8.6e-05 Score=59.59 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=34.9
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
+|+. ++.++.||.|...||..|+..+...... ..|+|+.|......
T Consensus 7 ~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~~ 52 (189)
T 2ro1_A 7 VCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDL 52 (189)
T ss_dssp TTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCC-TTCCTTTTSCSCCT
T ss_pred cCCC----CCceeECCCCCchhccccCCCCcccCCC-CCCCCcCccCCCCC
Confidence 6664 3469999999999999999765443322 57999999987553
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.02 E-value=0.00039 Score=50.81 Aligned_cols=44 Identities=20% Similarity=0.618 Sum_probs=34.5
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 187 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~ 187 (228)
+|+...+ ...|+.|+.|.+.||..|++++...... ..|.|+.|.
T Consensus 12 ~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~-~~W~C~~C~ 55 (111)
T 2ysm_A 12 VCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKR-AGWQCPECK 55 (111)
T ss_dssp TTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTS-TTCCCTTTC
T ss_pred CCCCCCC-CcCCeECCCCCCCcChHHhCCccccccc-cCccCCcCC
Confidence 7887653 3578999999999999999997654322 579998875
No 64
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.43 E-value=0.00051 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.656 Sum_probs=29.5
Q ss_pred CCceEECCCCCceecCCCCCCChhhhC--CCCeEEccccc
Q 027093 150 DDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCS 187 (228)
Q Consensus 150 ~~~mi~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~ 187 (228)
.+.||.|+.|...||..|+++.+...+ ....|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 468999999999999999998643211 12589999985
No 65
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.33 E-value=0.0015 Score=48.02 Aligned_cols=38 Identities=26% Similarity=0.706 Sum_probs=28.8
Q ss_pred CCceEECCCCCceecCCCCCCChhhhC--CCCeEEccccc
Q 027093 150 DDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCS 187 (228)
Q Consensus 150 ~~~mi~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~ 187 (228)
.+.||.|+.|...||..|++++..... ....|.|+.|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468999999999999999999743211 11479888873
No 66
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.60 E-value=0.00098 Score=50.86 Aligned_cols=52 Identities=17% Similarity=0.512 Sum_probs=37.3
Q ss_pred CCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhh--h----CCCCeEEcccccccc
Q 027093 135 DRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEE--A----KKLDHFLCSDCSSDV 190 (228)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~--~----~~~~~~~C~~C~~~~ 190 (228)
+....+| +|+ .++..+.||.|-.-||..|+..+..+ . ...+.|.|+.|..+.
T Consensus 60 Dg~~d~C~vC~----~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 60 DGMDEQCRWCA----EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp TSCBCSCSSSC----CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCCCeecccC----CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 3445566 566 35688999999999999999854321 1 123689999998653
No 67
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.84 E-value=0.0028 Score=47.49 Aligned_cols=53 Identities=17% Similarity=0.483 Sum_probs=37.8
Q ss_pred CCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCC-----hhhh-CCCCeEEccccccccc
Q 027093 135 DRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMT-----IEEA-KKLDHFLCSDCSSDVD 191 (228)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~-----~~~~-~~~~~~~C~~C~~~~~ 191 (228)
+....+| +|+ .++..+.|+.|-+-||..|+..+ ...+ ...+.|.|..|..+.-
T Consensus 54 Dg~~~~C~vC~----dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCA----EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTC----CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCcCeecC----CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3455567 666 35688999999999999999854 1122 1237899999977543
No 68
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.35 E-value=0.58 Score=28.50 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.8
Q ss_pred eecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
.-+|......+...+.-..|+..||..|+..-... ...||.|+..
T Consensus 8 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp CTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred CccCCccccCCCceEECCCCCCcccHHHHHHHHHc-----CCcCcCCCCE
Confidence 34888776655555666679999999998543221 2459999864
No 69
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.58 E-value=1.3 Score=30.42 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=36.3
Q ss_pred ceeeecCCCCCCCC-----CceEECCCC-CceecCCCCCCChhhhCCCCeEEcccccc
Q 027093 137 VAVYCKCEMPYNPD-----DLMVQCEGC-KDWFHPSCMGMTIEEAKKLDHFLCSDCSS 188 (228)
Q Consensus 137 ~~~~C~C~~~~~~~-----~~mi~C~~C-~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~ 188 (228)
....|+|.+..+.. -.+|.|..| ..=-|..|..+.... +.|.|..|..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~~~----~~weC~~C~~ 78 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNS----KKWECNECLP 78 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCTTC----SCCCCTTTSC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcCCC----CCEECCcCcc
Confidence 35678886654432 377999999 688999999985322 6899999984
No 70
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=78.22 E-value=4 Score=26.03 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=37.0
Q ss_pred EEEEEEeecccccCCccccCCCCeEEeeCCceeeeccceEeeeEEEe
Q 027093 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (228)
Q Consensus 58 v~v~WfyRp~d~~~~~~~~~~~~ELFlS~~~d~i~~~~I~gkc~V~~ 104 (228)
|.|.=+-|..|+.-.....-++.||.....++-.++-.|+|++.|++
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t 59 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 59 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEE
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEe
Confidence 66666788888854333335889999999999999999999999986
No 71
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.05 E-value=0.88 Score=30.72 Aligned_cols=52 Identities=17% Similarity=0.462 Sum_probs=33.7
Q ss_pred eeecCCCCCCCCCceEE---CCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 139 VYCKCEMPYNPDDLMVQ---CEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 139 ~~C~C~~~~~~~~~mi~---C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
..-||...++.++.++. |.+...+||..|+..=.... ....|+.|......+
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIME 71 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCCC
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeecC
Confidence 33488876665555553 22345999999995533322 235799999987654
No 72
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=77.04 E-value=1.4 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.599 Sum_probs=23.2
Q ss_pred CCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccc
Q 027093 147 YNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSD 185 (228)
Q Consensus 147 ~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~ 185 (228)
..+...+|||+.|.+|=-.. .++. ......+.|+|..
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP-~~~~-~~~~~pd~W~C~m 58 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIP-ASVV-GSIDESSRWICMN 58 (100)
T ss_dssp CSSSSEEEECTTTCCEEEEC-HHHH-TTSTTSSCCCGGG
T ss_pred CCCCCeEEeeCCCCccccCC-hhHc-cccCCCCCceeCC
Confidence 33577899999999997643 1110 0112347899965
No 73
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=76.24 E-value=0.15 Score=34.95 Aligned_cols=47 Identities=26% Similarity=0.625 Sum_probs=32.4
Q ss_pred ee-cCCCCCCCCCceEECCCCCceecCCCCCCC---hh----h----hCCCCeEEcccccc
Q 027093 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMT---IE----E----AKKLDHFLCSDCSS 188 (228)
Q Consensus 140 ~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~---~~----~----~~~~~~~~C~~C~~ 188 (228)
.| +|... ..+.++.|..|.+-||..|+.-. .. + +.--.-|.|+.|..
T Consensus 17 ~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVW--TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCccccc--cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 35 67765 36788999999999999998431 11 1 11113699999954
No 74
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=76.13 E-value=5.5 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=37.1
Q ss_pred EEEEEEeecccccCCccccCCCCeEEeeCCceeeeccceEeeeEEEe
Q 027093 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (228)
Q Consensus 58 v~v~WfyRp~d~~~~~~~~~~~~ELFlS~~~d~i~~~~I~gkc~V~~ 104 (228)
|.|.=+-|..|+.-.....-++.||.+...++-.++-.|+|++.|++
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t 67 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQT 67 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEe
Confidence 66666778888743222235789999999999999999999999987
No 75
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.11 E-value=3.1 Score=27.12 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=30.5
Q ss_pred eecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
.-+|..........+. -.|+..||..|+..-... ...||.|+......
T Consensus 18 C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 18 CPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCS
T ss_pred CeeCCccccCCCCEEE-eCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCc
Confidence 3488876653332222 259999999999643221 24699999877643
No 76
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.83 E-value=1.2 Score=28.92 Aligned_cols=46 Identities=28% Similarity=0.548 Sum_probs=30.0
Q ss_pred eecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
.-+|............. .|+..||..|+..-.... ..||.|+....
T Consensus 18 C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 18 CAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp CSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 34888776544333332 599999999996533221 26999998765
No 77
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=75.50 E-value=6.3 Score=25.59 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=37.5
Q ss_pred EEEEEEeecccccCCccccCCCCeEEeeCCceeeeccceEeeeEEEe
Q 027093 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 104 (228)
Q Consensus 58 v~v~WfyRp~d~~~~~~~~~~~~ELFlS~~~d~i~~~~I~gkc~V~~ 104 (228)
|.|.=+-|..||.-.....-+..||.+....+-.++-.|+||+.|+.
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t 63 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 63 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEe
Confidence 66677888888753322235889999999999999999999999986
No 78
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=74.70 E-value=4.2 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.9
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEcC
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~ 52 (228)
.++.||.|++.-.+ ..+|.|.|+++....
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecCC
Confidence 46789999999887 799999999997753
No 79
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=74.00 E-value=1.5 Score=30.22 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=23.6
Q ss_pred Cceeee-cCCCCCCCCCceEECC--CCCceecCCCCC
Q 027093 136 RVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMG 169 (228)
Q Consensus 136 ~~~~~C-~C~~~~~~~~~mi~C~--~C~~w~H~~Cv~ 169 (228)
.+.+.| +|++. ..+-.|||. .|...||..|..
T Consensus 15 R~~l~C~iC~~~--~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 15 RWKLTCYLCKQK--GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCBTTTTBC--CSSCEEECSCTTTCCEEEHHHHH
T ss_pred HhcCCCcCCCCC--CCcEeEecCCCCCCCcCcHHHHH
Confidence 444545 89753 246789998 599999999973
No 80
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.47 E-value=0.52 Score=36.29 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=38.8
Q ss_pred CCCceeee-cCCCCCCCCCceEECC--CCCceecCCCCCCC-----hhhhCCCCeEEcccccccc
Q 027093 134 PDRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMT-----IEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 134 p~~~~~~C-~C~~~~~~~~~mi~C~--~C~~w~H~~Cv~~~-----~~~~~~~~~~~C~~C~~~~ 190 (228)
++....|| +|.. ++.++.|+ .|..-|..+||... .......+.|.|-.|....
T Consensus 75 eDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 75 DDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp TTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 34556788 6763 67899999 89999999999432 2222334899999999765
No 81
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=72.34 E-value=3.8 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.5
Q ss_pred EccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEE
Q 027093 23 VRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWY 63 (228)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~Wf 63 (228)
-.+||.+.|.....+.+...|.|+++... +|..-..|+|+
T Consensus 6 A~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~ 45 (83)
T 2a7y_A 6 AKVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWL 45 (83)
T ss_dssp CCTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEET
T ss_pred ccCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEec
Confidence 36899999999877789999999999884 56667788995
No 82
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=72.24 E-value=0.71 Score=32.82 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=26.0
Q ss_pred ECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 155 QCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 155 ~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
.-..|+..||..|+..-...........||.|+.....+
T Consensus 57 ~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred ecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345799999999996433211111356899999877644
No 83
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=71.54 E-value=0.6 Score=41.08 Aligned_cols=52 Identities=17% Similarity=0.579 Sum_probs=38.2
Q ss_pred CCceeee-cCCCCCCCCCceEECC--CCCceecCCCCCCCh-----hhhCCCCeEEcccccccc
Q 027093 135 DRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTI-----EEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 135 ~~~~~~C-~C~~~~~~~~~mi~C~--~C~~w~H~~Cv~~~~-----~~~~~~~~~~C~~C~~~~ 190 (228)
+....|| +|+. ++.++.|+ .|..-|..+|+.... ......+.|.|-.|..+.
T Consensus 90 DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 90 DGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 4567777 6663 56899999 999999999995421 122234789999999876
No 84
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=69.34 E-value=4.3 Score=27.09 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=26.2
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
...|..||.|++.-.| ..+|.|.|.++...
T Consensus 24 ~~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred cceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 3578999999999987 79999999999774
No 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=68.74 E-value=0.97 Score=27.38 Aligned_cols=45 Identities=18% Similarity=0.444 Sum_probs=30.0
Q ss_pred ecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 141 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 141 C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
-+|..........+..-.|+..||..|+..-.... ..||.|+...
T Consensus 9 ~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 9 PICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp TTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred cccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 37877664444445556799999999996533221 5699998643
No 86
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=63.76 E-value=9.9 Score=24.65 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=24.3
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
.+++||.|+..=.+ ..+|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 58999999988755 68999999999874
No 87
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=61.09 E-value=7.5 Score=25.36 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=22.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKI 48 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i 48 (228)
..|.+||.|++.-.+ ..+|+|.|++.
T Consensus 14 ~~~~~geDVL~rw~D--G~fYLGtIVd~ 39 (69)
T 2xk0_A 14 VTYALQEDVFIKCND--GRFYLGTIIDQ 39 (69)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEEEEE
T ss_pred cccccCCeEEEEecC--CCEEEEEEEec
Confidence 368899999999887 79999999553
No 88
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=59.44 E-value=5.7 Score=30.29 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCC---CCEEEEEEEEeec
Q 027093 19 TNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYYRP 66 (228)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~---~~~~v~v~WfyRp 66 (228)
++..+.+||.|..+-.. -+.|-|+|........ ..-.+.|+||-..
T Consensus 13 dg~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~ 61 (154)
T 3llr_A 13 DGRGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG 61 (154)
T ss_dssp SSCCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred cCCCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCCC
Confidence 35689999999999876 7999999999764321 1124556666433
No 89
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=59.08 E-value=6.7 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=21.8
Q ss_pred CCCceEECC--CCCceecCCCCCCChhhhCCCCeEEccc
Q 027093 149 PDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCSD 185 (228)
Q Consensus 149 ~~~~mi~C~--~C~~w~H~~Cv~~~~~~~~~~~~~~C~~ 185 (228)
+...+|||+ .|.+|=-..= ++.. ...++.|+|..
T Consensus 14 ~~~~WVQCd~p~C~KWR~LP~-~~~~--~~lpd~W~C~m 49 (69)
T 2e61_A 14 QCLVWVQCSFPNCGKWRRLCG-NIDP--SVLPDNWSCDQ 49 (69)
T ss_dssp CCCCEEECSSTTTCCEEECCS-SCCT--TTSCTTCCGGG
T ss_pred CCCeEEEeCccccCcccCCcc-cccc--ccCCCcCEeCC
Confidence 356889999 9999976521 1111 12347899963
No 90
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=56.18 E-value=8.7 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=31.3
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEeEEEEcC-----CC-CEEEEEEEEee
Q 027093 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-----RN-NVKVRVRWYYR 65 (228)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~-----~~-~~~v~v~WfyR 65 (228)
+..|.+||.|...-.. -+.|-|+|...-... .+ ...+.|+||-.
T Consensus 20 ~~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp SCCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 4689999999999886 789999998864321 11 24566666653
No 91
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.99 E-value=2.9 Score=26.52 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=29.8
Q ss_pred eecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
.-+|......... +..-.|+..||..|+..-.... ..||.|+.....
T Consensus 17 C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 17 CTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp BTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 3388776543333 3333699999999996533221 249999987654
No 92
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.00 E-value=20 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.7
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
+..+..||.|+..=.| ..+|.|.|.++...
T Consensus 7 ~~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred CcccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 4578999999998877 78999999999864
No 93
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=52.70 E-value=8.1 Score=29.13 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=23.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~ 50 (228)
..|++||.|...-.. -+.|-|+|.+.-.
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~ 48 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPD 48 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC-
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchh
Confidence 468999999999976 7899999987543
No 94
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.08 E-value=9.2 Score=27.89 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=39.4
Q ss_pred cccCCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhh-CCCCeEEccccccc
Q 027093 131 GFTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA-KKLDHFLCSDCSSD 189 (228)
Q Consensus 131 ~f~p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~-~~~~~~~C~~C~~~ 189 (228)
.+.|+.....| .|+.+.+....-..|-.|+..|...|.......+ .....-+|..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~ 122 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 122 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHH
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHH
Confidence 34566666777 7888766545557899999999999986432111 12247889888653
No 95
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=49.75 E-value=15 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.2
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~ 49 (228)
..|.+||.|+-.=.. +..+|-|||.+|-
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEec
Confidence 568999999988773 6789999999998
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.47 E-value=7.9 Score=25.95 Aligned_cols=60 Identities=18% Similarity=0.424 Sum_probs=39.0
Q ss_pred ccCCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhh-CCCCeEEccccccccc
Q 027093 132 FTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA-KKLDHFLCSDCSSDVD 191 (228)
Q Consensus 132 f~p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~-~~~~~~~C~~C~~~~~ 191 (228)
..|+.....| .|+.+.+....-..|-.|+..|...|.......+ .....-+|..|.....
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3455666667 7887765444557899999999999986432111 1225789999987544
No 97
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=49.34 E-value=15 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.8
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~ 49 (228)
..|.+||.|+-.=+. +..+|-|||.+|-
T Consensus 8 ~~~~vgd~VmaRW~G-d~~yYparI~Si~ 35 (66)
T 2l8d_A 8 RKYADGEVVMGRWPG-SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSCSSCEEEEECTT-SSCEEEEEEEEEE
T ss_pred eEeecCCEEEEEcCC-CccceEEEEEEec
Confidence 468999999998743 5788999999998
No 98
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=47.87 E-value=15 Score=22.68 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=32.7
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecc
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPE 67 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~ 67 (228)
.+.+||.|.|..+. -.-+.|.|.++.. .++.+.+.+..|-|.-
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~-~k~~v~V~v~~~Gr~t 46 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINP-ERGKVKVMVTIFGRET 46 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEET-TTTEEEEEEESSSSEE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcC-CCCEEEEEEEeCCCEE
Confidence 46889999999986 4667899999964 3455777777776654
No 99
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=47.00 E-value=6.6 Score=29.62 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCC---CCEEEEEEEEe
Q 027093 19 TNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYY 64 (228)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~---~~~~v~v~Wfy 64 (228)
++..+++||.|...-.. -+.|-|+|.+...... ..-.+.|.||-
T Consensus 8 ~~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CCccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 45689999999999875 7899999987654321 11245666654
No 100
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=46.56 E-value=6.1 Score=28.20 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCeEEccCCEEEEccCCCCCCCeEEEEeEE
Q 027093 19 TNKVVRPGDCVLMRPADSDKPPYVARVEKI 48 (228)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i 48 (228)
.+..+++||.|..+-.. -+.|-|+|.++
T Consensus 16 ~~~~~~~GdlVwaK~kG--yP~WPa~V~~~ 43 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKMKG--YPHWPARIDEM 43 (110)
T ss_dssp CSSSCCTTCEEEEEETT--EEEEEEEEECC
T ss_pred ccCCCCCCCEEEEEeCC--CCCCCEEEecc
Confidence 34678999999999876 78999999865
No 101
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.53 E-value=9.2 Score=24.00 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=30.8
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEee
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYR 65 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyR 65 (228)
..+.+||.|.|..+. -.-+.|.|+++.. ..+.+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~---e~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDG---NKITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBT---TEEEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeC---CEEEEEEEecCC
Confidence 468999999999997 5778999999964 256666655555
No 102
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=45.05 E-value=13 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=22.2
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEE
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKI 48 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i 48 (228)
.+++||.|..+-.. -+.|-|+|.++
T Consensus 5 ~f~~GdlVwaK~~g--~p~WPa~V~~~ 29 (94)
T 3qby_A 5 AFKPGDLVFAKMKG--YPHWPARIDDI 29 (94)
T ss_dssp CCCTTCEEEECCTT--SCCEEEEECCC
T ss_pred cCccCCEEEEecCC--CCCCCEEEeec
Confidence 58899999999976 78999999876
No 103
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.41 E-value=23 Score=23.69 Aligned_cols=61 Identities=18% Similarity=0.528 Sum_probs=40.4
Q ss_pred cccCCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhC---------CCCeEEccccccccc
Q 027093 131 GFTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK---------KLDHFLCSDCSSDVD 191 (228)
Q Consensus 131 ~f~p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~---------~~~~~~C~~C~~~~~ 191 (228)
...|+.....| .|..+.+--..--.|-.|+..|...|.......+. ....-+|..|.....
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHh
Confidence 34566667777 78887654445578999999999999754211110 124679999987544
No 104
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=42.93 E-value=3.3 Score=28.11 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=29.4
Q ss_pred eecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 140 YCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 140 ~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
.-+|......+...+.- .|+..||..|+..-... ...||.|+....
T Consensus 43 C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 43 CPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK-----SGTCPVCRCMFP 88 (91)
T ss_dssp ETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT-----TCBCTTTCCBSS
T ss_pred CcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc-----CCcCcCcCccCC
Confidence 44888766544433333 49999999998542221 236999987543
No 105
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=42.34 E-value=25 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.0
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEeEEEEcC-------CCCEEEEEEEEe
Q 027093 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-------RNNVKVRVRWYY 64 (228)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~-------~~~~~v~v~Wfy 64 (228)
+..+++||.|...-.. -+.|-|+|..-.... .+...+.|++|-
T Consensus 3 ~~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 3 DDRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp SCCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CCcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 3578999999999886 789999997653311 123456666554
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.89 E-value=5.2 Score=25.82 Aligned_cols=47 Identities=17% Similarity=0.507 Sum_probs=29.9
Q ss_pred eeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 139 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 139 ~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
..-+|........ .+..-.|+..||..|+..-... ...||.|+....
T Consensus 25 ~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 25 LCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKA-----NRTCPICRADSG 71 (75)
T ss_dssp EETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHc-----CCcCcCcCCcCC
Confidence 3448887665333 3333459999999999653322 236999987543
No 107
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=41.02 E-value=10 Score=26.73 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=25.6
Q ss_pred CCCeEEccCCEEEEccCCCCCCCeEEEEeEEE
Q 027093 18 GTNKVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (228)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~ 49 (228)
++|..+++||.|...-.. -+.|-|+|.+..
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~ 33 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPR 33 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChh
Confidence 567789999999999886 789999998763
No 108
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.74 E-value=1.4 Score=29.54 Aligned_cols=34 Identities=26% Similarity=0.578 Sum_probs=22.9
Q ss_pred eEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 153 MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 153 mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
.+.-..|+..||..|+..=... .-.||.|+....
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQ-----NNRCPLCQQDWV 75 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTT-----CCBCTTTCCBCC
T ss_pred EEEeCCCCCccChHHHHHHHHh-----CCCCCCcCCCcc
Confidence 3344479999999998542221 126999998754
No 109
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=40.11 E-value=37 Score=23.32 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=23.5
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEcC
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~ 52 (228)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 478899999998753
No 110
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.51 E-value=9.8 Score=25.12 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=31.9
Q ss_pred ceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 137 ~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
....-+|.....++ +.|..|..-||..|+.-=.... ..-.||.|...-.
T Consensus 15 i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~---~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC---SSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc---CCCCCCCCcCcCC
Confidence 34445888776533 5889999999999995311110 1134999987644
No 111
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=38.66 E-value=24 Score=20.94 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=23.9
Q ss_pred ceeee-cCCCCCCCCCceEECCCCCceecCCCCCCC
Q 027093 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMT 171 (228)
Q Consensus 137 ~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~ 171 (228)
.+.+| .|++..- .-.+|..|+.-.|..|+..-
T Consensus 13 ~pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 13 KLAFCDICQKFLL---NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp SCEECTTSSSEEC---SEEECTTTTCCBCSTTSSSS
T ss_pred CCcCCCCcccccc---cCCEeCCCCCeEChhHHhhC
Confidence 35666 6766432 45799999999999998753
No 112
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.04 E-value=13 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=20.2
Q ss_pred EECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 154 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
.+|..|+--|... .|.+..-.+.++.|.|+.|....
T Consensus 5 y~C~vCGyvyd~~-~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 5 YVCNVCGYEYDPA-EHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp EEETTTCCEECGG-GGTTCCGGGSCTTCBCTTTCCBG
T ss_pred EECCCCCeEEeCC-cCCCcchhhCCCCCcCcCCCCcH
Confidence 4677777666532 11111112244679999998753
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.26 E-value=19 Score=24.53 Aligned_cols=59 Identities=19% Similarity=0.466 Sum_probs=40.5
Q ss_pred cCCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhC-CCCeEEccccccccc
Q 027093 133 TPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK-KLDHFLCSDCSSDVD 191 (228)
Q Consensus 133 ~p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~-~~~~~~C~~C~~~~~ 191 (228)
.|+.....| .|..+.+....-..|-.|+..|...|......... ....-+|..|-....
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 455556667 78887664445588999999999999876432111 124689999987654
No 114
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.95 E-value=11 Score=27.94 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=38.8
Q ss_pred eeee-cCCCCCC-CCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 138 AVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 138 ~~~C-~C~~~~~-~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
...| +|..+.. -+..-..|..|+.-+...|-+...... .-..|+|..|......+
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~-~~~~W~C~vC~k~rel~ 111 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR-PHPVWLCKICLEQREVW 111 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS-SSCCEEEHHHHHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCC-CccceechhhHHHHHHH
Confidence 3455 8888763 233458999999999999987653221 22479999999987654
No 115
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=34.86 E-value=36 Score=22.00 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=27.4
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEE
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWY 63 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~Wf 63 (228)
.+++||-|+-.=++ ..+|-|+|.+|-.+ + ...|..+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~--~--~Y~V~F~ 41 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD--G--TYTVKFY 41 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT--S--EEEEEET
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC--C--eEEEEEe
Confidence 57899999999854 78899999999765 2 2556543
No 116
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.96 E-value=22 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.5
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
..+..||.|+..=.+ ..+|.|.|.++...
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 468899999999776 68999999998754
No 117
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=33.70 E-value=44 Score=23.91 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.4
Q ss_pred CCCeEEccCCEEEEccCC
Q 027093 18 GTNKVVRPGDCVLMRPAD 35 (228)
Q Consensus 18 g~~~~~~vGD~V~v~~~~ 35 (228)
|.-..++.||++++.++.
T Consensus 86 g~~~~l~~GD~~~ip~g~ 103 (123)
T 3bcw_A 86 GTVHAVKAGDAFIMPEGY 103 (123)
T ss_dssp CCEEEEETTCEEEECTTC
T ss_pred CeEEEECCCCEEEECCCC
Confidence 334678999999999986
No 118
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=32.13 E-value=50 Score=23.90 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=27.6
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVR 59 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~ 59 (228)
..++.||.|.|.++. +.--.|+|.++... .+.+.|.
T Consensus 41 ~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k-~~~V~VE 76 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD--FAGEEGEVINVDLD-KAVIHVE 76 (120)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEET
T ss_pred ccccCCCEEEEEecC--CCCCEEEEEEEECC-CCEEEEe
Confidence 578899999999997 56689999999863 3334433
No 119
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.62 E-value=34 Score=23.16 Aligned_cols=55 Identities=15% Similarity=0.462 Sum_probs=37.5
Q ss_pred eeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhC--CCCeEEcccccccccc
Q 027093 138 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK--KLDHFLCSDCSSDVDA 192 (228)
Q Consensus 138 ~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~--~~~~~~C~~C~~~~~~ 192 (228)
...| .|..+.+....-..|-.|+..|...|.......+. ....-+|..|......
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 3456 78877665455588999999999999865322111 1246899999987553
No 120
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=31.43 E-value=38 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.1
Q ss_pred EEEcCCC--eEEccCCEEEEccCC
Q 027093 14 YNIKGTN--KVVRPGDCVLMRPAD 35 (228)
Q Consensus 14 ~~v~g~~--~~~~vGD~V~v~~~~ 35 (228)
+.+.+.. ..++.||+|+|.++.
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 4555555 689999999999875
No 121
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=31.17 E-value=48 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.8
Q ss_pred EEEc-CCCeEEccCCEEEEccCC
Q 027093 14 YNIK-GTNKVVRPGDCVLMRPAD 35 (228)
Q Consensus 14 ~~v~-g~~~~~~vGD~V~v~~~~ 35 (228)
+.++ +.-..++.||.+++.++.
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 4455 555778999999999886
No 122
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=30.62 E-value=55 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.4
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
..|.+|+.|++.-.+ ...|-|+|+++...
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~ 39 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVN 39 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEec
Confidence 468999999999864 47889999999875
No 123
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.31 E-value=60 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEcC
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~ 52 (228)
..++.||-|.|..+. +.--.|+|.++....
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLKR 73 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETTT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEecC
Confidence 568899999999997 566789999998643
No 124
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=28.29 E-value=1e+02 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.3
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
..|.+|+.|++.-+ ...|-|+|+++...
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 35889999999884 47899999999874
No 125
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.12 E-value=34 Score=21.12 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=20.2
Q ss_pred EECCCCCceecCCCCCCCh-------hhhCCCCeEEcccccccc
Q 027093 154 VQCEGCKDWFHPSCMGMTI-------EEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 154 i~C~~C~~w~H~~Cv~~~~-------~~~~~~~~~~C~~C~~~~ 190 (228)
.+|..|+--|... .|-+. ...+.++.|.|+.|....
T Consensus 4 y~C~vCGyvYd~~-~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K 46 (54)
T 4rxn_A 4 YTCTVCGYIYDPE-DGDPDDGVNPGTDFKDIPDDWVCPLCGVGK 46 (54)
T ss_dssp EEETTTCCEECTT-TCBGGGTBCTTCCGGGSCTTCBCTTTCCBG
T ss_pred eECCCCCeEECCC-cCCcccCcCCCCChhHCCCCCcCcCCCCcH
Confidence 3566676555543 22211 112345789999998753
No 126
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=27.95 E-value=19 Score=22.98 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=28.9
Q ss_pred ecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEcccccccc
Q 027093 141 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 141 C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 190 (228)
-+|..... ..+.-..|+..||..|+..-.... ....||.|....
T Consensus 19 ~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~ 62 (74)
T 2yur_A 19 LICKDIMT---DAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQND 62 (74)
T ss_dssp SSSCCCCT---TCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSS
T ss_pred cCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcC
Confidence 38876653 233444599999999996543322 235799999864
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.76 E-value=16 Score=26.49 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=33.4
Q ss_pred CCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccc
Q 027093 134 PDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 189 (228)
Q Consensus 134 p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 189 (228)
|+.....| .|+.+.+....--.|-.|+.-|...|..-.... .-+|..|-..
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-----vRVC~~C~~~ 66 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-----PRLCLLCQRF 66 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-----ceECHHHHHH
Confidence 56666677 888876544455889999999999998765432 5789999764
No 128
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=27.61 E-value=2.8 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=27.4
Q ss_pred cCCCCCCCCCceEE--CCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 142 KCEMPYNPDDLMVQ--CEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 142 ~C~~~~~~~~~mi~--C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
||....+. ..... |.+..+++|..|+..=.... ....|+.|......
T Consensus 11 IC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 11 ICNEELGN-ERFRACGCTGELENVHRSCLSTWLTIS---RNTACQICGVVYNT 59 (60)
T ss_dssp TTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHHH---TCSBCTTTCCBCCC
T ss_pred EeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHhC---CCCccCCCCCeeec
Confidence 66544322 22333 33555699999995532222 24679999887654
No 129
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=27.48 E-value=45 Score=24.72 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=33.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeec
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRP 66 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp 66 (228)
..+.+||.|.|..+. -.-+.|.|.++... .+.+.+.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~-k~~v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDES-KDEVVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCC-CCEEEEEEEeccee
Confidence 458899999999986 56679999999763 45577777777664
No 130
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.02 E-value=71 Score=21.13 Aligned_cols=60 Identities=15% Similarity=0.327 Sum_probs=40.7
Q ss_pred ccCCCceeee-cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCC---CCeEEccccccccc
Q 027093 132 FTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKK---LDHFLCSDCSSDVD 191 (228)
Q Consensus 132 f~p~~~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~---~~~~~C~~C~~~~~ 191 (228)
..|+.....| .|..+.+.-..--.|-.|+..|...|.......+.. ...-+|..|.....
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 4566667777 788876655555889999999999998764222111 13678999876543
No 131
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=26.82 E-value=56 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEcC
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~ 52 (228)
..++.||.|.|.++. +.--.|+|.++....
T Consensus 5 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp CSCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred cccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 357889999999997 566689999998753
No 132
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=26.67 E-value=43 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEcCCCeEEccCCEEEEccCC
Q 027093 14 YNIKGTNKVVRPGDCVLMRPAD 35 (228)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~ 35 (228)
+.++|.-.+++.||.|+|.++.
T Consensus 72 ~~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 72 VSTDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 4455556778999999999986
No 133
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=26.51 E-value=17 Score=24.84 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=23.9
Q ss_pred ee-cCCCCCCCCCceEECCCCCceecCCCCCCChhh
Q 027093 140 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEE 174 (228)
Q Consensus 140 ~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~ 174 (228)
.| .|+.. ..+....|..|+-..|..|+..++..
T Consensus 49 ~C~~C~~~--~~~~~Y~C~~C~f~lH~~Ca~~p~~~ 82 (89)
T 1v5n_A 49 TCDKCEEE--GTIWSYHCDECDFDLHAKCALNEDTK 82 (89)
T ss_dssp CCTTTSCC--CCSCEEECTTTCCCCCHHHHHCSSCS
T ss_pred EeCCCCCc--CCCcEEEcCCCCCeEcHHhcCCCCcc
Confidence 35 56655 35677889999999999998776543
No 134
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.40 E-value=15 Score=29.86 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=32.9
Q ss_pred ceeeecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 137 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 137 ~~~~C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
...+.+|...-.++ +.|..|+.-||..|+..-.... ..-.||.|...-.
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~---~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTC---SSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhC---CCCCCCCCCCCCC
Confidence 34444898876543 8899999999999995421111 2345999987543
No 135
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.24 E-value=88 Score=20.55 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=24.5
Q ss_pred ceeee-cCCCCCCCC--CceEECCCCCceecCCCCCC
Q 027093 137 VAVYC-KCEMPYNPD--DLMVQCEGCKDWFHPSCMGM 170 (228)
Q Consensus 137 ~~~~C-~C~~~~~~~--~~mi~C~~C~~w~H~~Cv~~ 170 (228)
.+.+| .|+... .+ ..-.+|..|+.-.|..|...
T Consensus 27 ~pt~C~~C~~~l-wGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFV-WGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCC-CSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhh-ccccccccccCCcCCeeChhhhhh
Confidence 45666 777654 22 35589999999999999876
No 136
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=26.06 E-value=57 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.4
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEE
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~ 50 (228)
..+++||.+...=.. +...|=|+|.+|..
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 468999999988643 25677799999975
No 137
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=25.76 E-value=23 Score=20.40 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=16.9
Q ss_pred CceEECCCCCceecCCCCCC
Q 027093 151 DLMVQCEGCKDWFHPSCMGM 170 (228)
Q Consensus 151 ~~mi~C~~C~~w~H~~Cv~~ 170 (228)
...+-|+.|++.|=.+|-.-
T Consensus 9 ~~yl~CE~C~~~~~~~Cp~H 28 (39)
T 2l9z_A 9 LFTIWCTLCDRAYPSDCPEH 28 (39)
T ss_dssp SCSEEEGGGTEEESSSBTTT
T ss_pred hhhhHHHHHhhhchhhchhc
Confidence 46789999999999999755
No 138
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=25.75 E-value=1.2e+02 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred eEEccCCEEEEccCCC--CCCCeEEEEeEEEEcCC
Q 027093 21 KVVRPGDCVLMRPADS--DKPPYVARVEKIEADHR 53 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~I~rI~~i~~~~~ 53 (228)
..|.+|+-|+..-.+. +...|=|+|+++....+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~ 52 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKD 52 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccC
Confidence 3688999999987653 23457899999976543
No 139
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=11 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.390 Sum_probs=32.4
Q ss_pred eee-cCCCCCCCCCc-eEECCCCCceecCCCCCCChhhhCCCCeEEcccccccccc
Q 027093 139 VYC-KCEMPYNPDDL-MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 192 (228)
Q Consensus 139 ~~C-~C~~~~~~~~~-mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 192 (228)
..| +|...+..... .+.- .|+..||..|+..-.... .....||.|......
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccc
Confidence 345 88877654332 2332 699999999996533221 135779999987553
No 140
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.11 E-value=6.8 Score=24.46 Aligned_cols=45 Identities=16% Similarity=0.474 Sum_probs=27.4
Q ss_pred cCCCCCCCC---CceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 142 KCEMPYNPD---DLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 142 ~C~~~~~~~---~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
+|....... ...+.-..|+..||..|+..-... ...||.|.....
T Consensus 20 IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 20 ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred ccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 776654311 222334578999999998643222 235999987654
No 141
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=24.98 E-value=1.5e+02 Score=19.51 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCCeEEEEeEEEEcCCCCEEEEEEEEeec
Q 027093 37 DKPPYVARVEKIEADHRNNVKVRVRWYYRP 66 (228)
Q Consensus 37 ~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp 66 (228)
++.+-|-+|+.-....+|.+...|.|---|
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~ 50 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYG 50 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCC
Confidence 456778888887777788899999996544
No 142
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=24.93 E-value=73 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=23.2
Q ss_pred EccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 23 VRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
++.||.|.|.++. +.--.|+|.++...
T Consensus 4 IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 4 IRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred ccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 6789999999997 56678999999875
No 143
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=24.13 E-value=50 Score=21.34 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=23.4
Q ss_pred ceeee-cCCCCCCCCCceEECCCCCceecCCCCCC
Q 027093 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGM 170 (228)
Q Consensus 137 ~~~~C-~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~ 170 (228)
.+.+| .|+.-. ...-.+|..|+--.|..|...
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCKFTCHSECRSL 66 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSSCEECTGGGGG
T ss_pred CCcchhhhhHHH--HhCcCccCCCCCeechhhhcc
Confidence 45666 676654 344578999999999999754
No 144
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=23.90 E-value=52 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.7
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
.++.||.|.|.++. +.--.|+|.++...
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 42 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPR 42 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETT
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECC
Confidence 47889999999997 56679999999864
No 145
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.90 E-value=8.8 Score=24.40 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=27.7
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
+|..... ..+ .- .|+..||..|+..-... ...|+.|+.....+
T Consensus 20 IC~~~~~--~~~-~~-~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 20 ICLQTCV--HPV-SL-PCKHVFCYLCVKGASWL-----GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSBCS--SEE-EE-TTTEEEEHHHHHHCTTC-----SSBCSSSCCBCCHH
T ss_pred cCCcccC--CCE-Ec-cCCCHHHHHHHHHHHHC-----CCcCcCcCchhCHh
Confidence 8876543 222 22 59999999998532221 24699999887643
No 146
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.52 E-value=93 Score=21.41 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=23.2
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEEcC
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~ 52 (228)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 5789999999963 578899999998743
No 147
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.50 E-value=60 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=24.2
Q ss_pred eEEccCCEEEEccCCCCCCCeE-EEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYV-ARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I-~rI~~i~~~ 51 (228)
..|+.||.|.|.++. +.--. |+|.++...
T Consensus 47 ~~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k 76 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGH--YKGQQIGKVVQVYRK 76 (145)
T ss_dssp CBCCTTCEEEECSST--TTTCCSEEEEEEETT
T ss_pred cccCCCCEEEEeecC--CCCcceeEEEEEECC
Confidence 568999999999997 45567 999999864
No 148
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=26 Score=22.12 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred cCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccccc
Q 027093 142 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 193 (228)
Q Consensus 142 ~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~k 193 (228)
+|..... ..+.-..|+.-||..|+..-... ...||.|.......
T Consensus 20 IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 20 ICKGYLI---DATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQT 63 (72)
T ss_dssp TTSSCCS---SCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSS
T ss_pred CCChHHH---CcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCcc
Confidence 7876543 23444579999999998654322 24599999876643
No 149
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.36 E-value=40 Score=29.01 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=26.1
Q ss_pred CCceeee-cCCCCCC-CCCceEECCCCCceecCCCCCC
Q 027093 135 DRVAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 170 (228)
Q Consensus 135 ~~~~~~C-~C~~~~~-~~~~mi~C~~C~~w~H~~Cv~~ 170 (228)
...+.+| .|+.... -...-.+|..|+..+|..|...
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 4567788 6776542 1234478999999999999864
No 150
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=23.31 E-value=20 Score=22.24 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=27.2
Q ss_pred ecCCCCCCCCCceEECCCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 141 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 141 C~C~~~~~~~~~mi~C~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
-+|...... .+.--.|+..||..|+..-... ...||.|+....
T Consensus 9 ~IC~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 9 PICLEDPSN---YSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVE 51 (68)
T ss_dssp SSCCSCCCS---CEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCC
T ss_pred eeCCccccC---CcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhH
Confidence 377765431 1233469999999998543222 246999998765
No 151
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.26 E-value=43 Score=20.62 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=10.8
Q ss_pred CCCeEEcccccccc
Q 027093 177 KLDHFLCSDCSSDV 190 (228)
Q Consensus 177 ~~~~~~C~~C~~~~ 190 (228)
.++.|.|+.|....
T Consensus 33 lP~dw~CP~Cga~K 46 (55)
T 2v3b_B 33 IPADWVCPDCGVGK 46 (55)
T ss_dssp SCTTCCCTTTCCCG
T ss_pred CCCCCcCCCCCCCH
Confidence 34789999998753
No 152
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.20 E-value=41 Score=20.49 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.3
Q ss_pred CCCeEEccccccc
Q 027093 177 KLDHFLCSDCSSD 189 (228)
Q Consensus 177 ~~~~~~C~~C~~~ 189 (228)
.++.|.|+.|...
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 3478999999874
No 153
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.18 E-value=49 Score=21.47 Aligned_cols=38 Identities=26% Similarity=0.586 Sum_probs=20.7
Q ss_pred EECCCCCceecCCCC----CCCh--hhhCCCCeEEccccccccc
Q 027093 154 VQCEGCKDWFHPSCM----GMTI--EEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 154 i~C~~C~~w~H~~Cv----~~~~--~~~~~~~~~~C~~C~~~~~ 191 (228)
-.|..|+--|.+.== ++++ ...+.++.|.|+.|.....
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~ 51 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKN 51 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGG
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHH
Confidence 467777755543210 1111 1122347899999998543
No 154
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.16 E-value=29 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=9.8
Q ss_pred CeEEccccccccc
Q 027093 179 DHFLCSDCSSDVD 191 (228)
Q Consensus 179 ~~~~C~~C~~~~~ 191 (228)
.-|+||.|+..-.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 3599999987543
No 155
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=22.83 E-value=1.4e+02 Score=18.16 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=20.6
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEE
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~ 50 (228)
.+++||.+...=.. +...|=|+|.++..
T Consensus 3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE-DGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTT-TSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 47899988887543 25677799999943
No 156
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.73 E-value=33 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=20.3
Q ss_pred EECCCCCceecCCC----CCCCh--hhhCCCCeEEcccccccc
Q 027093 154 VQCEGCKDWFHPSC----MGMTI--EEAKKLDHFLCSDCSSDV 190 (228)
Q Consensus 154 i~C~~C~~w~H~~C----v~~~~--~~~~~~~~~~C~~C~~~~ 190 (228)
-.|..|+--|-+.= -++++ ...+.++.|.||.|....
T Consensus 28 y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 70 (81)
T 2kn9_A 28 FRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAK 70 (81)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCG
T ss_pred EEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCH
Confidence 56777765555421 11211 112234689999998754
No 157
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.71 E-value=45 Score=17.27 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=8.6
Q ss_pred CCceEECCCCCce
Q 027093 150 DDLMVQCEGCKDW 162 (228)
Q Consensus 150 ~~~mi~C~~C~~w 162 (228)
.++-+||..|+..
T Consensus 3 pef~vqcpvcqq~ 15 (29)
T 3vhs_A 3 PEFQVQCPVCQQM 15 (29)
T ss_dssp --CEEECTTTCCE
T ss_pred CceeeeChHHHHh
Confidence 3577889888764
No 158
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=22.66 E-value=53 Score=24.62 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=27.3
Q ss_pred EEEcCCCeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEEEeecccccC
Q 027093 14 YNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIG 71 (228)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~WfyRp~d~~~ 71 (228)
+.++|.-..++.||.++|.++.+ .+ |... ..+++.|...|...+.
T Consensus 97 l~i~g~~~~l~~GD~i~iP~G~~------h~----~~n~---~~a~~l~V~~P~~~~~ 141 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPKGSK------IQ----FSVP---DYARFIYVTYPADWAS 141 (151)
T ss_dssp EEETTEEEEEETTCEEEECTTCE------EE----EEEE---EEEEEEEEEECSCC--
T ss_pred EEECCEEEEEcCCCEEEECCCCE------EE----EEeC---CCEEEEEEECCCCccc
Confidence 45566566778999999999861 11 1111 2366777777775543
No 159
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=22.16 E-value=1e+02 Score=22.53 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.8
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
..++.||-|.|.++. +.--.|+|.+++..
T Consensus 48 ~~IkkgD~V~Vi~Gk--dKGk~GkV~~V~~k 76 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGS--KKGQEGKISSVYRL 76 (127)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEEGG
T ss_pred ccccCCCEEEEeecC--CCCccceEEEEECC
Confidence 467889999999997 45557999999874
No 160
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.11 E-value=32 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.863 Sum_probs=15.7
Q ss_pred CCceEECCCCCceecCCCCCC
Q 027093 150 DDLMVQCEGCKDWFHPSCMGM 170 (228)
Q Consensus 150 ~~~mi~C~~C~~w~H~~Cv~~ 170 (228)
..-.++|-.|++||+-.--+.
T Consensus 22 ~~~~~~c~~~~~wfcn~~~~~ 42 (802)
T 2xzl_A 22 AKCVIKCNSCKKWFCNTKNGT 42 (802)
T ss_dssp TTTEEEETTTCCEEECCCSSS
T ss_pred CceEEEeCCCCcEecCCCCCC
Confidence 346899999999999544333
No 161
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.80 E-value=2e+02 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred EEccCCEEEEccCCCCCCCeE-EEEeEEEEcC------CCCEEEEEEEEeecc
Q 027093 22 VVRPGDCVLMRPADSDKPPYV-ARVEKIEADH------RNNVKVRVRWYYRPE 67 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I-~rI~~i~~~~------~~~~~v~v~WfyRp~ 67 (228)
.|++||.|-....+ ...|+ |+|+.|.+.. ...+..+|.|=--|+
T Consensus 2 ~yki~~~vd~~d~~--~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~ 52 (226)
T 3ask_A 2 LYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPE 52 (226)
T ss_dssp CSCTTCEEEEECTT--TCCEEEEEEEEEEECC------CCCEEEEEEETTCGG
T ss_pred ccccCceEEeeecC--CCceeEEEEEEEeccccccCCCCCceEEEeecccCcc
Confidence 58999999998876 44555 9999998843 233666776544444
No 162
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=21.55 E-value=1.4e+02 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.3
Q ss_pred cCCCeEEccCCEEEEccCCC--CCCCeEEEEeEEEEcC
Q 027093 17 KGTNKVVRPGDCVLMRPADS--DKPPYVARVEKIEADH 52 (228)
Q Consensus 17 ~g~~~~~~vGD~V~v~~~~~--~~~~~I~rI~~i~~~~ 52 (228)
.+....|.+|+-|++.-+++ ....|=|+|++|....
T Consensus 14 ~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 14 RDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred ccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 44456799999999998642 2467889999998754
No 163
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.45 E-value=20 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=0.0
Q ss_pred CCCCceecCCCCCCChhhhCCCCeEEccccccccc
Q 027093 157 EGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 191 (228)
Q Consensus 157 ~~C~~w~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 191 (228)
..|+..||..|+..=... .-.||.|+....
T Consensus 82 ~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT-----RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------
T ss_pred CCcCceEcHHHHHHHHHc-----CCcCCCCCCeee
Confidence 379999999999664322 356999987643
No 164
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=21.26 E-value=63 Score=21.86 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=16.9
Q ss_pred EEEcCCCeEEccCCEEEEccCC
Q 027093 14 YNIKGTNKVVRPGDCVLMRPAD 35 (228)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~ 35 (228)
+.+++....++.||.+++.++.
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~ 92 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHK 92 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEecCCCEEEECCCC
Confidence 4555555678899999999886
No 165
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.04 E-value=60 Score=23.40 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=17.2
Q ss_pred EEEcCCCeEEccCCEEEEccCC
Q 027093 14 YNIKGTNKVVRPGDCVLMRPAD 35 (228)
Q Consensus 14 ~~v~g~~~~~~vGD~V~v~~~~ 35 (228)
+.++|.-..++.||.+++.++.
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 4555556678999999999986
No 166
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=21.03 E-value=83 Score=16.88 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=10.0
Q ss_pred CeEEcccccccccc
Q 027093 179 DHFLCSDCSSDVDA 192 (228)
Q Consensus 179 ~~~~C~~C~~~~~~ 192 (228)
..|.|+.|...+-.
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 56999988765543
No 167
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=21.00 E-value=87 Score=20.30 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=20.9
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEeEEEE
Q 027093 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (228)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~I~rI~~i~~ 50 (228)
.+++||.|-|..+. -.--.|.|.++..
T Consensus 17 ~F~~GDHVkVi~G~--~~getGlVV~v~~ 43 (69)
T 2do3_A 17 YFKMGDHVKVIAGR--FEGDTGLIVRVEE 43 (69)
T ss_dssp SCCTTCEEEESSST--TTTCEEEEEEECS
T ss_pred eccCCCeEEEeccE--EcCceEEEEEEeC
Confidence 57899999999986 3445788877764
No 168
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=20.99 E-value=33 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=16.4
Q ss_pred ceeeecCCCCCCC--C----CceEECCCCCceec
Q 027093 137 VAVYCKCEMPYNP--D----DLMVQCEGCKDWFH 164 (228)
Q Consensus 137 ~~~~C~C~~~~~~--~----~~mi~C~~C~~w~H 164 (228)
....|.|+..+.- + +..+.|.+|..||.
T Consensus 111 f~~~CrCG~~f~i~~~~l~~~~~v~C~sCSl~~~ 144 (155)
T 2l6l_A 111 FYLSCRCGGKYSVSKDEAEEVSLISCDTCSLIIE 144 (155)
T ss_dssp EEEECSSSCEEEEETTHHHHCCEEECSSSSCEEE
T ss_pred EEEcCCCCCeEEecHHHhCCCCEEECCCCceEEE
Confidence 3455777754321 1 14678888888774
No 169
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=20.79 E-value=69 Score=21.69 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.5
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEeEEEEcCCCCEEEEEEE
Q 027093 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRW 62 (228)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~~~~~~~v~v~W 62 (228)
...+++||-|+-.=++ ..+|-|+|.+|-.+ + ...|.+
T Consensus 19 ~~~f~vGd~VlArW~D--~~yYPAkI~sV~~~--~--~YtV~F 55 (85)
T 3qii_A 19 SSEFQINEQVLACWSD--CRFYPAKVTAVNKD--G--TYTVKF 55 (85)
T ss_dssp --CCCTTCEEEEECTT--SCEEEEEEEEECTT--S--EEEEEE
T ss_pred CcccccCCEEEEEeCC--CCEeeEEEEEECCC--C--eEEEEE
Confidence 3578999999999854 78899999999765 2 355654
No 170
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=20.71 E-value=1e+02 Score=23.10 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=23.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I~rI~~i~~~ 51 (228)
..|+.||-|.|.++. +.--.|+|.+++..
T Consensus 47 ~~IkKGD~V~Vi~Gk--dKGk~GkVl~V~~k 75 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGS--YKGREGKVVQVYRR 75 (150)
T ss_dssp EECCSSSEEEECSST--TTTCEEEEEEEETT
T ss_pred cccCCCCEEEEeecC--CCCccceEEEEEcC
Confidence 467889999999997 45557999999874
No 171
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.67 E-value=63 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=14.4
Q ss_pred ccCCEEEEccCCCCCCCeEEEEeEEEE
Q 027093 24 RPGDCVLMRPADSDKPPYVARVEKIEA 50 (228)
Q Consensus 24 ~vGD~V~v~~~~~~~~~~I~rI~~i~~ 50 (228)
.+||.|.|...+- ..--|+|+.+..
T Consensus 72 ~~GD~V~ve~~~~--~~~kG~I~~~~~ 96 (117)
T 2oqk_A 72 NPGDIVLVSLRDF--QDSKGDIILKYT 96 (117)
T ss_dssp CTTCEEEEEECTT--CTTEEEEEEECC
T ss_pred CCCCEEEEEEEcC--CCCeEEEEEEec
Confidence 4788888876531 122466666554
No 172
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=20.09 E-value=2.4e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.9
Q ss_pred eEEccCCEEEEccCCCCCCCeE-EEEeEEEEc
Q 027093 21 KVVRPGDCVLMRPADSDKPPYV-ARVEKIEAD 51 (228)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~I-~rI~~i~~~ 51 (228)
..|++||.|=....+ ...|+ |+|++|...
T Consensus 9 glYKinelVDarD~~--~GAWFEA~Iv~Vtr~ 38 (161)
T 3db3_A 9 GLYKVNEYVDARDTN--MGAWFEAQVVRVTRK 38 (161)
T ss_dssp CSSCTTCEEEEECTT--TCCEEEEEEEEEEEC
T ss_pred ceEEecceeeeeccC--CCcceEEEEEEEEec
Confidence 368999999888876 67787 999998874
Done!