BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027094
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 67 DRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSK 126
+ I C T P+LC ++L K L S+++ A AK TS ++ ++
Sbjct: 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTN 61
Query: 127 ---SPGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSD---IQTWVSA 180
P +K R + C E +D++D L + A F LT D + + SA
Sbjct: 62 QATDPKLKGR----YETCSENYADAIDSLGQ---------AKQF-LTSGDYNSLNIYASA 107
Query: 181 ALTDETTCSDGFE 193
A TC D FE
Sbjct: 108 AFDGAGTCEDSFE 120
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 65 AADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKL--LAHASLNVTLAMAKSTSAVML 122
A D + T C T P+ C K L + SP L LA +L+ T A A T L
Sbjct: 2 AMDSSEMSTICDKTLNPSFCLKFLNTKFA----SPNLQALAKTTLDSTQARATQT----L 53
Query: 123 KMSKS---PGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVS 179
K +S G+ PR A + C++E ++ L ++ + AS + M+ VS
Sbjct: 54 KKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVS 106
Query: 180 AALTDETTCSDGFEK------NTVNGKVVRAQIVKIAHMTSNAL 217
AAL TC D ++ + VN + IA + SN L
Sbjct: 107 AALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 150
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 65 AADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKM 124
A D + T C T P+ C K L + + + LA +L+ T A A T LK
Sbjct: 2 AMDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQT----LKK 55
Query: 125 SKS---PGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAA 181
+S G+ PR A + C++E ++ L ++ + AS + M+ VSAA
Sbjct: 56 LQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVSAA 108
Query: 182 LTDETTCSDGFEK------NTVNGKVVRAQIVKIAHMTSNAL 217
L TC D ++ + VN + IA + SN L
Sbjct: 109 LDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 150
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%)
Query: 71 IKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKS--- 127
+ T C T P+ C K L + + + LA +L+ T A A T LK +S
Sbjct: 7 MSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQT----LKKLQSIID 60
Query: 128 PGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETT 187
G+ PR A + C++E ++ L ++ + AS + M+ VSAAL T
Sbjct: 61 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVSAALDGADT 113
Query: 188 CSDGFEK------NTVNGKVVRAQIVKIAHMTSNAL 217
C D ++ + VN + IA + SN L
Sbjct: 114 CLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 149
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 129 GMKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161
G +P ++DA+ D L ++S VD+L+ I EM L
Sbjct: 181 GEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDL 213
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 126 KSPGMKPREVDAMQDCLEELSDSVDELRKSIG-----------EMGLIKASNFELTMSDI 174
K G ++DAM + +EE++ +V + ++ E+ KA+ + +T++D+
Sbjct: 691 KVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADV 750
Query: 175 QTWVSAAL 182
Q +V++A+
Sbjct: 751 QLFVTSAV 758
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 126 KSPGMKPREVDAMQDCLEELSDSVDELRKSIG-----------EMGLIKASNFELTMSDI 174
K G ++DAM + +EE++ +V + ++ E+ KA+ + +T++D+
Sbjct: 691 KVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADV 750
Query: 175 QTWVSAAL 182
Q +V++A+
Sbjct: 751 QLFVTSAV 758
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 126 KSPGMKPREVDAMQDCLEELSDSVDELRKSIG-----------EMGLIKASNFELTMSDI 174
K G ++DAM + +EE++ +V + ++ E+ KA+ + +T++D+
Sbjct: 691 KVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADV 750
Query: 175 QTWVSAAL 182
Q +V++A+
Sbjct: 751 QLFVTSAV 758
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 126 KSPGMKPREVDAMQDCLEELSDSVDELRKSIG-----------EMGLIKASNFELTMSDI 174
K G ++DAM + +EE++ +V + ++ E+ KA+ + +T++D+
Sbjct: 691 KVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADV 750
Query: 175 QTWVSAAL 182
Q +V++A+
Sbjct: 751 QLFVTSAV 758
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 126 KSPGMKPREVDAMQDCLEELSDSVDELRKSIG-----------EMGLIKASNFELTMSDI 174
K G ++DAM + +EE++ +V + ++ E+ KA+ + +T++D+
Sbjct: 692 KVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADV 751
Query: 175 QTWVSAAL 182
Q +V++A+
Sbjct: 752 QLFVTSAV 759
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,518,195
Number of Sequences: 62578
Number of extensions: 172245
Number of successful extensions: 528
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 14
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)