Query 027094
Match_columns 228
No_of_seqs 172 out of 854
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 4.2E-34 1.4E-38 227.7 17.7 149 68-224 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 1.2E-33 4.3E-38 225.3 14.7 148 67-224 4-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 5.2E-33 1.8E-37 221.2 16.7 147 66-223 2-149 (150)
4 2l7n_A Talin-1; integrin, bund 38.8 1.4E+02 0.0048 23.4 8.5 59 131-189 105-164 (168)
5 3cjh_B Mitochondrial import in 36.2 68 0.0023 20.6 4.8 30 129-158 33-62 (64)
6 3dxr_B Mitochondrial import in 29.9 92 0.0032 22.0 4.9 33 129-161 55-87 (95)
7 2bsk_B Mitochondrial import in 27.4 1.1E+02 0.0037 21.1 5.0 33 129-161 42-74 (90)
8 3dxr_A Mitochondrial import in 27.1 1.2E+02 0.004 21.0 5.0 33 129-161 49-81 (89)
9 2bsk_A Mitochondrial import in 26.5 1.2E+02 0.004 21.0 5.0 33 129-161 40-72 (89)
10 3cjh_A Mitochondrial import in 18.9 1.1E+02 0.0037 19.8 3.2 32 130-161 25-56 (64)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=4.2e-34 Score=227.67 Aligned_cols=149 Identities=21% Similarity=0.352 Sum_probs=135.4
Q ss_pred hHHHHccccCCCChhchHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 027094 68 RRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSD 147 (228)
Q Consensus 68 ~~~I~~~C~~T~yp~~C~~sLs~~p~s~~~dp~~L~~~al~~a~~~a~~a~~~v~~l~~~~~~~~~~~~aL~dC~ely~~ 147 (228)
.++|+.+|+.|+||++|+++|.++|++...||++|+++++++++.++..+..++.++.+.. .+|+.+.+++||.|+|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999987889999999999999999999999999997654 479999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccHhHHHHHHHHHhcchhHHHhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 027094 148 SVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSYA 224 (228)
Q Consensus 148 avd~L~~a~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~DgF~~~~~~~~~v~~~~~~~~~L~SnaLAii~~l~ 224 (228)
++++|++++.+|+.+ .++|+++|||+|++|++||+|||++.+.....|...+.++.+|++|+|+|++.+.
T Consensus 82 a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 82 AIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999854 4799999999999999999999987642123388999999999999999999874
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.2e-33 Score=225.29 Aligned_cols=148 Identities=23% Similarity=0.321 Sum_probs=131.9
Q ss_pred hhHHHHccccCCCChhchHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 027094 67 DRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELS 146 (228)
Q Consensus 67 ~~~~I~~~C~~T~yp~~C~~sLs~~p~s~~~dp~~L~~~al~~a~~~a~~a~~~v~~l~~~~~~~~~~~~aL~dC~ely~ 146 (228)
+.++|+.+|+.|+||++|+++| .|.+...||++|+++++++++.++..+..++.++.+.. .+++.+.+++||.|+|+
T Consensus 4 ~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~ 80 (153)
T 1x91_A 4 DSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEYE 80 (153)
T ss_dssp -CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 56666789999999999999999999999999987654 48999999999999999
Q ss_pred hHHHHHHHHHHHhcccccccccccHhHHHHHHHHHhcchhHHHhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 027094 147 DSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSYA 224 (228)
Q Consensus 147 ~avd~L~~a~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~DgF~~~~~~~~~v~~~~~~~~~L~SnaLAii~~l~ 224 (228)
+++++|++++.+++.+ .++|+++|||+|++|++||+|||++.+...+.|..++.++.+|++|+|+|++.+.
T Consensus 81 ~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 81 SAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999864 4799999999999999999999987641112389999999999999999999875
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=5.2e-33 Score=221.20 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=132.2
Q ss_pred hhhHHHHccccCCCChhchHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 027094 66 ADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEEL 145 (228)
Q Consensus 66 a~~~~I~~~C~~T~yp~~C~~sLs~~p~s~~~dp~~L~~~al~~a~~~a~~a~~~v~~l~~~~~~~~~~~~aL~dC~ely 145 (228)
+..++|+.+|++|+||++|+++|.++|++...||.+|+++++++++.++..+..++.++.+.. .+++.+.+++||.|+|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHH
Confidence 456799999999999999999999999988889999999999999999999999999987654 4789999999999999
Q ss_pred hhHH-HHHHHHHHHhcccccccccccHhHHHHHHHHHhcchhHHHhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Q 027094 146 SDSV-DELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSY 223 (228)
Q Consensus 146 ~~av-d~L~~a~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~DgF~~~~~~~~~v~~~~~~~~~L~SnaLAii~~l 223 (228)
++++ ++|++++.+++.+ .++++++|||+|++|++||+|||++. ..+ |..++.++.+|++|+|||++.+
T Consensus 81 ~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~--~~p-l~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 81 KVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS--KSP-FSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS--CCT-THHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC--CCc-cHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 7999999999853 47899999999999999999999842 123 8889999999999999999875
No 4
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=38.80 E-value=1.4e+02 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=35.6
Q ss_pred ChhH-HHHHHHHHHHHhhHHHHHHHHHHHhcccccccccccHhHHHHHHHHHhcchhHHH
Q 027094 131 KPRE-VDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCS 189 (228)
Q Consensus 131 ~~~~-~~aL~dC~ely~~avd~L~~a~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~ 189 (228)
+|.. +.-+..+.+.++++..-++++...+.......-......+-.-+|.++.....|+
T Consensus 105 d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~aL~~~v~cL 164 (168)
T 2l7n_A 105 DPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSCL 164 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444 4455556688888888888888877653211111234455566777876655564
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=36.22 E-value=68 Score=20.65 Aligned_cols=30 Identities=10% Similarity=0.371 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027094 129 GMKPREVDAMQDCLEELSDSVDELRKSIGE 158 (228)
Q Consensus 129 ~~~~~~~~aL~dC~ely~~avd~L~~a~~~ 158 (228)
..+..+..++..|.+-|-++-..+.+.+..
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999998888776654
No 6
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=29.85 E-value=92 Score=21.96 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 027094 129 GMKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161 (228)
Q Consensus 129 ~~~~~~~~aL~dC~ely~~avd~L~~a~~~L~~ 161 (228)
.++..+..|+..|++-|-++-..+.+.+.++..
T Consensus 55 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 55 ELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999888877664
No 7
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=27.40 E-value=1.1e+02 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 027094 129 GMKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161 (228)
Q Consensus 129 ~~~~~~~~aL~dC~ely~~avd~L~~a~~~L~~ 161 (228)
.++..+..|+..|++-|-++-..+.+.+..+..
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999888877664
No 8
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=27.09 E-value=1.2e+02 Score=20.98 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 027094 129 GMKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161 (228)
Q Consensus 129 ~~~~~~~~aL~dC~ely~~avd~L~~a~~~L~~ 161 (228)
.++..+..|+..|++-|-++-..+...+.++..
T Consensus 49 ~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 49 KLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999988887764
No 9
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=26.49 E-value=1.2e+02 Score=21.00 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 027094 129 GMKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161 (228)
Q Consensus 129 ~~~~~~~~aL~dC~ely~~avd~L~~a~~~L~~ 161 (228)
.++..+..|+..|++-|-++-..+.+.+.++..
T Consensus 40 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 40 EVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999888887764
No 10
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=18.91 E-value=1.1e+02 Score=19.80 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 027094 130 MKPREVDAMQDCLEELSDSVDELRKSIGEMGL 161 (228)
Q Consensus 130 ~~~~~~~aL~dC~ely~~avd~L~~a~~~L~~ 161 (228)
++..+..++..|++-|-++-..+.+.+..+..
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999888776553
Done!