BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027096
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 12/223 (5%)
Query: 13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L I++ +VT +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
+LA+AK +K+DLSS+++V SGAAPLGKEL + P+A + QGYG+TE + M
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------- 181
FA G+ G + E IV DT L NQ GEI +RG +M+
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 448
Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
AT TIDK GW+HTGD+G D D +L++VDR+KELIKYKGFQV
Sbjct: 449 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 136/217 (62%), Gaps = 14/217 (6%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T++ +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+ ATK I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
D++GW+HTGD+GY+D + ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 14/217 (6%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+ ATK I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
D++GW+HTGD+GY+D + ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 9/219 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G I+LM +F+ E+FLR+++ +++ +VP L
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK LV K+DLS+L + SG APL KE+ E AK + QGYGLTET+ A +
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTS-AIII 385
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
G+ G + P A IV +DT K L NQ GE+ ++GP +M+ AT
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSA 445
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
IDK GW+H+GD+ Y+D DG ++VDR+K LIKYKG+QV
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQV 484
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 14/217 (6%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+ ATK I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
D++GW+HTGD+GY+D + ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 143/222 (64%), Gaps = 12/222 (5%)
Query: 15 VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ L IEK++V+ VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
++AK + K DLSSL+++ SG APLGKEL + P A + QGYG+TE + M
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCL 343
Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
+FA G+ G + E IV +T LP NQ GEI +RG +M+ AT
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEAT 403
Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 225
TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVA 445
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LAK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
+ G G+ G + P EA +V +DT K L NQ GE+ +RGP +M AT
Sbjct: 357 -TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNA 415
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
IDK GW+H+GD+ Y+D D ++VDR+K LIKYKG QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
G G+ G + P EA +V +DT K L NQ GE+ +RGP +M AT
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
IDK GW+H+GD+ Y+D D ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 357
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
G G+ G + P EA +V +DT K L NQ GE+ +RGP +M AT
Sbjct: 358 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 415
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
IDK GW+H+GD+ Y+D D ++VDR+K LIKYKG+QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
G G+ G + P EA +V +DT K L NQ GE+ +RGP +M AT
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
IDK GW+H+GD+ Y+D D ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L +LPLFHV GL ++ Q Q G ++ AKFD R IE H+VT + P++
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + L+SL+ V P E +E P+AT +G +ETSG++T
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST---- 312
Query: 135 FAGSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMR-------ATKL 185
FA R+ SAG P + VD + +PLPP ++GEI LRGP + + AT+
Sbjct: 313 FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQH 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 224
+ GW HTGD+G FD DG L+ R KELIK G V
Sbjct: 371 AF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L I + KFD + L R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + K +L SG+APL + E + A V++ YG TET+
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETN--XNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKL 185
N + G R G+ G PGV A + +T K LP +G I ++GPN+ + TK
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
G+ TGDLG D G ++++ R K+L+ GF V
Sbjct: 371 EFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 21 PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
P FH FGL + + G+ ++ F+ E IEK++ T W VPP + L
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78 -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETSGIAT 130
K +D S LK+ +GA P+ L+E+ K N P Q +G TE T
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLT---- 186
++ + G +E ++S++ + L + GEI +RGPN+ +
Sbjct: 346 TNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 187 -----IDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
D+KG + TGD+G+ D +G L+ DR+KE+IKYKG+ +
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
N + G R G+ G PGV A + +T LP +G I + GPN M T
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
G+ TGDLG D G ++++ R +L+ GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
N + G R G+ G PGV A + +T LP +G I + GPN M T
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
G+ TGDLG D G ++++ R +L+ GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
N + G R G+ G PGV A + +T LP +G I + GPN M T
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
G+ TGDLG D G ++++ R +L+ GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
+ D +L VLP++H+ GL+V+ ++ G + ++ KF+ E L I+ R+THI +VP
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71 LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSG-- 127
+ L + GL + ++L + L G A L ++E + N+P + +G+TET
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQF 314
Query: 128 -IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRATKL 185
AT E A +G A +VD + P + GE+ ++G N+M
Sbjct: 315 LTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYLY 364
Query: 186 TID-----KKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
D + G+ +TGD+ D +G + + DR K+LI
Sbjct: 365 PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 15/217 (6%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + D + +G AP+ + L++ AKN+ V+QGY LTE+ G T+ S
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 329
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATKLTI 187
R GSAG + + D + + GE+ ++ N AT+
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 387
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
D GW TGD+G D +G LY+ DR+K++I G V
Sbjct: 388 DN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V + LPLFHV GL + G L++G + + +F E R + T ++ VP +
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75 LAK-----HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
+A+ L K L+ +L+ SG+A L E A VI+ YG+TET +
Sbjct: 257 IAETLPADPELAKA--LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET--LM 311
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMM------- 180
G G+ G PGVE +V D L +GEI +RGPN+
Sbjct: 312 NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRP 371
Query: 181 RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 224
AT + G+ TGD+ D DG + +V R +LIK G+++
Sbjct: 372 DATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + D + +G AP+ + L++ AKN+ V+QGY LTE+ G T+ S
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 315
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATKLTI 187
R GSAG + + D + + GE+ ++ N AT+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVD 211
D GW TGD+G D +G LY+ D
Sbjct: 374 DN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 48/253 (18%)
Query: 18 CV--LPLFHVFGLAVITCGQLQKGSCIILMAKFDLE----MFLRAIEKHRVTHIWVVPPL 71
CV LP +H GL + + + D +L+ I K+R T + V PP
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPF 278
Query: 72 ILALAKHGLVKK----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
L + + +K DLS ++ G GA P+ E + + A+ N + T YGL
Sbjct: 279 GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGL 338
Query: 123 TETSGIATMENSFAG------SRNI--GSAGALAPGVEALIVS--VDTQKPLPPNQL--- 169
E + + + +G R+I A+APG E VS V+ K LP + +
Sbjct: 339 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 398
Query: 170 ------------GEIWLRGPNMM------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVD 211
G I + GP++ + ++ I GW+ TGDLGY DG LYV
Sbjct: 399 NEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTG 457
Query: 212 RIKELIKYKGFQV 224
RIK+LI +G +
Sbjct: 458 RIKDLIIIRGRNI 470
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 25/232 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L V+P+FHV + L ++ + D + + VT VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75 LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA + L +L+ +VG AAP + L+ + V QGYGLTETS +
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTETSPVVVQN 336
Query: 133 ------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMM- 180
S + + G P V L V+ + +P+P + LGE+ L+GP +
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGPWITG 395
Query: 181 ------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
AT+ + G+ TGD+ +D +G + + DR+K+LIK G ++S
Sbjct: 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
LC LP H F L+ G L G C+++ + I++H+V +VP ++
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP---SATVIQGYGLTETSGIATM 131
+ K + SLKL+ G G E A+ VP + + Q +G+ E G+
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAE--GLVNY 348
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMM-------RAT 183
I + + I VD Q + +P ++G + RGP
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
D+ + ++GDL DG L VV RIK+ I G ++ S
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS 451
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 24/228 (10%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
+LC +P H + ++ + G G ++L A + IEKH+V +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75 LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPS---ATVIQGYGLTE-TSG 127
L L++ + L+SLKL+ G A L L A +P+ + Q +G+ E
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQVFGMAEGLVN 342
Query: 128 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA---- 182
+++S + I + G + P E + + PLP ++G + RGP R
Sbjct: 343 YTRLDDS--AEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRGYYKS 399
Query: 183 ---TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
D G+ +GDL D +G + V R K+ I G ++ +
Sbjct: 400 PQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP+ H + L+ G L G ++L + IE+ +VT +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
++ DLSSL+++ G A E K V T+ Q +G+ E T +
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLT 186
++P E+ + D + + P + G + RGP +R +
Sbjct: 344 DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
+ G+ TGD+ DG + V R K+ I G +V +
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 87/222 (39%), Gaps = 12/222 (5%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP H + L+ G L G ++L + IE+ +VT +VPPL
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
++ DLSSL+++ G A E K V T+ Q +G E G+
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAE--GLVNYTR 341
Query: 134 SFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKL 185
I + G + V D + + P + G + RGP +R
Sbjct: 342 LDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
+ + G+ TGD+ DG + V R K+ I G +V +
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 34 GQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
GQ G + + +F+ + L K+ VT + PP I + ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDLSHYNFSTLKY 345
Query: 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV 151
PL E+ + +++G+G TET + T+ GS G PG
Sbjct: 346 AVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTET--VVTIATFPWMEPKPGSIGKPTPGY 402
Query: 152 EALIVSVDTQKPLPPNQLGEIWLR-------------GPNMMRATKLTIDKKGWVHTGDL 198
+ ++ D + + GEI + G + R + D G+ HTGD+
Sbjct: 403 KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD--GYYHTGDM 459
Query: 199 GYFDGDGQLYVVDRIKELIKYKGFQV 224
+ D DG L+ V R ++IK G++V
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKV 485
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 21/247 (8%)
Query: 1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRA 56
++TM + VF + + G + G L G ++ A + +
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 57 IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--P 112
I++H+VT +V P + L + G ++ L SL+ +GS P+ E+ E ++ +
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 113 SATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-G 170
++ Y TE+ S + T GSA G++A+++ +T + L + G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 171 EIWLRG--PNMMRATKLTIDK---------KGWVHTGDLGYFDGDGQLYVVDRIKELIKY 219
+ ++ P+ R D+ G+ TGD D DG ++++ R+ +++
Sbjct: 472 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV 531
Query: 220 KGFQVTS 226
G ++++
Sbjct: 532 SGHRLST 538
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR---------- 181
+++ GS + S+G P E I+ DT P +Q+GEIW++ ++ +
Sbjct: 364 DDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETR 421
Query: 182 ---ATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELI 217
A K+ D++ ++ TGDLG+ + +LYV RIK+LI
Sbjct: 422 HAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V GYG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
G+ +APG E IV + + + + GE+ + + +
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ ++I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 109 KNVPSATVIQGYGLTE-TSGIATME--NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
+ P A + YG TE T + ++E N G P + I+ + Q PLP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PLP 340
Query: 166 PNQLGEIWLRGPNMMR--------ATKLTIDKKG-WVH-TGDLGYFDGDGQLYVVDRIKE 215
+ GEI + GP++ R K +G W + TGD G+ DGQ++ R+
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDF 399
Query: 216 LIKYKGFQV 224
IK G+++
Sbjct: 400 QIKLHGYRM 408
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
G+ +APG E IV + + + + GE+ + + +
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ ++I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
G+ +APG E IV + + + + GE+ + + +
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ ++I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
G+ +APG E IV + + + + GE+ + + +
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ ++I
Sbjct: 370 EATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
G+ +APG E IV + + + + GE+ + + +
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ ++I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMI 405
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 24/231 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
G M G+ + + A P GV+ +V + P G + + +A
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQART 476
Query: 185 LTIDKKGWVHT-----------GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
L D + + T GD D DG ++ R+ +++ G ++
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 94 SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
+G P + + ++ P+ + GYG E+ G T AG + G+A G G
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS-GTALPIGVPLAG 391
Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNM---------MRATKLTIDK------KGWVHT 195
A ++ D KP LGE+++ G + + A + D + T
Sbjct: 392 KRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRT 450
Query: 196 GDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
GDL DG L V R + +K +GF+V
Sbjct: 451 GDLARRRADGVLEYVGRADDQVKIRGFRV 479
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 18/142 (12%)
Query: 100 GKELMEECAKNV----PSATVIQGYGLTE-TSGIATMENSFAGSRNIGS--AGALAPGVE 152
G+EL A+ + PSA +I YG TE T ++ +E + N G P
Sbjct: 273 GEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSP 332
Query: 153 ALIVSVDTQKPLPPNQLGEI----------WLRGPNMMRATKLTIDKKGWVHTGDLGYFD 202
I+ D K L + GEI +L P T + HTGD+G
Sbjct: 333 TYIIDEDG-KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391
Query: 203 GDGQLYVVDRIKELIKYKGFQV 224
D L R+ IKY G+++
Sbjct: 392 EDNILLYGGRLDFQIKYAGYRI 413
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 31/231 (13%)
Query: 22 LFHV--FGLAVITC-GQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
LFH F +V G G+ ++++ A E +L I VT I P LAL
Sbjct: 221 LFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLAL 280
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIAT--- 130
+ + D+S L+ V G L ++ AK + ++ GYG+TET+ T
Sbjct: 281 TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEE 340
Query: 131 -MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----MRATKL 185
E A +I G P +V D + + P + GE+WL G + +R +L
Sbjct: 341 ITEAYLAQDASI--IGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPEL 397
Query: 186 TIDK------------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
T +K + TGDL DG+ R IK +G+++
Sbjct: 398 TAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRI 448
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 34/207 (16%)
Query: 39 GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
G+C + L+ KFD + L+ + + + + P + L + DLSS K
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96 AAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
+G+ L+ E +N + T + + YG TET G+ M + + G G A +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 153 ALIVSVDTQKPLPPNQLGEIWLR---------------GPNMMRATKLTIDKKGWVHTGD 197
I+ D LPP G+I +R P+ T I W+ GD
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPD---KTAANIRGDFWL-LGD 439
Query: 198 LGYFDGDGQLYVVDRIKELIKYKGFQV 224
G D DG + R ++I G+++
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRI 466
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 34/207 (16%)
Query: 39 GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
G+C + L+ KFD + L+ + + + + P + L + DLSS K
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96 AAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
+G+ L+ E +N + T + + YG TET G+ M + + G G A +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 153 ALIVSVDTQKPLPPNQLGEIWLR---------------GPNMMRATKLTIDKKGWVHTGD 197
I+ D LPP G+I +R P+ T I W+ GD
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPD---KTAANIRGDFWL-LGD 439
Query: 198 LGYFDGDGQLYVVDRIKELIKYKGFQV 224
G D DG + R ++I G+++
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRI 466
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L + PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A ++E +++P V YG TE
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAX------ 310
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
NS R + APG E IV + + + + GE+ + + +
Sbjct: 311 NSLY-XRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
+ T +K GW T D+ + +G + ++ R+ + I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXI 405
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 99 LGKELMEECAKNVPSATVIQGYGLTET----SGIATMENSFAGSRNIGSAGALAPGVEAL 154
L E+ + + P AT++ YG TE +GI E +++ G L
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL-PVGYCKSDCRLL 331
Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLT------IDKKGWVHTGDLGYFDGD 204
I+ D P + GEI + GP++ + + +LT ID + TGD GY + +
Sbjct: 332 IMKEDGTI-APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-N 389
Query: 205 GQLYVVDRIKELIKYKGFQV 224
G L+ R+ IK G+++
Sbjct: 390 GLLFYNGRLDFQIKLHGYRM 409
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 99 LGKELMEECAKNVPSATVIQGYGLTET----SGIATMENSFAGSRNIGSAGALAPGVEAL 154
L E+ + + P AT++ YG TE +GI E +++ G L
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL-PVGYCKSDCRLL 331
Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLT------IDKKGWVHTGDLGYFDGD 204
I+ D P + GEI + GP++ + + +LT ID + TGD GY + +
Sbjct: 332 IMKEDGTI-APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-N 389
Query: 205 GQLYVVDRIKELIKYKGFQV 224
G L+ R+ IK G+++
Sbjct: 390 GLLFYNGRLDFQIKLHGYRM 409
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
T G+ T SF G + A A GVEA+ +VDT +P ++L +I + MM A K
Sbjct: 120 TVGVVTRPFSFEGRKRQTQAAA---GVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFK 176
Query: 185 LTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
+ ++G DL G+ L D +K ++ +G
Sbjct: 177 EADNVLRQGVQGISDLIAVSGEVNLDFAD-VKTIMSNQG 214
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
T G+ T SF G + A A GVEA+ +VDT +P ++L +I + MM A K
Sbjct: 134 TVGVVTRPFSFEGRKRQTQAAA---GVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFK 190
Query: 185 LTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
+ ++G DL G+ L D +K ++ +G
Sbjct: 191 EADNVLRQGVQGISDLIAVSGEVNLDFAD-VKTIMSNQG 228
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATK 184
T G+ T SF G + A A GVEA+ +VDT +P ++L +I + MM A K
Sbjct: 130 TVGVVTRPFSFEGRKRQTQAAA---GVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFK 186
Query: 185 LTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
+ ++G DL G+ L D +K ++ +G
Sbjct: 187 EADNVLRQGVQGISDLIAVSGEVNLDFAD-VKTIMSNQG 224
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 112 PSATVIQGYGLTETSG-----IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166
P ++ GYG TE + + T ++ IG A A G L++ Q+ P
Sbjct: 301 PRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIA---GTAVLLLDEHGQEIAEP 357
Query: 167 NQLGEIWLRGPNM----------MRATKLTIDKKGWV----HTGDLGYFDGDGQLYVVDR 212
++ GEI G + RA+ + + +G + TGD +D G+L + R
Sbjct: 358 DRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGR 417
Query: 213 IKELIKYKGFQV 224
+K G+++
Sbjct: 418 GDGQVKLNGYRL 429
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------------KLTIDKKG-----WVHTG 196
IV DT P +GEIW+ G N+ K+ G W+ TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 197 DLGYFDGDGQLYVVDR 212
D G F DG+++++ R
Sbjct: 466 DSG-FVTDGKMFIIGR 480
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
D F + I + +T I + P ++ L ++ + +L GS +P L+ +
Sbjct: 261 DFVKFEQYINQKEITVITLPPTYVVHLDPERIL---SIQTLITAGSATSP---SLVNKWK 314
Query: 109 KNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGAL-APGVEALIVSVDTQKPLPP- 166
+ V T I YG TET+ AT A IG + + AP I VD L
Sbjct: 315 EKV---TYINAYGPTETTICAT--TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV 369
Query: 167 NQLGEIWLRGPNMMRA----TKLTIDK---------KGWVHTGDLGYFDGDGQLYVVDRI 213
+ GE+ + G + R +LT K + TGD + DG + + RI
Sbjct: 370 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 214 KELIKYKGFQV 224
+K +G +V
Sbjct: 430 DNQVKIRGHRV 440
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------------KLTIDKKG-----WVHTG 196
IV DT P +GEIW+ G N+ K+ G W+ TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 197 DLGYFDGDGQLYVVDR 212
D G+ DG+ +++ R
Sbjct: 466 DSGFVT-DGKXFIIGR 480
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 90 KLVGSGAAPLGKELMEECAKNV 111
KL +G+ +G++LME+CAK++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDI 248
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 90 KLVGSGAAPLGKELMEECAKNV 111
KL +G+ +G++LME+CAK++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDI 248
>pdb|2YYB|A Chain A, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
pdb|2YYB|B Chain B, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
Length = 242
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 21 PLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
PL H GL + L GS L+ K D ++F+ KH V H L + A H
Sbjct: 153 PLVHQGGLDHVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFHETFERGLNVIYAGHYD 212
Query: 81 VKKFDLSSL 89
+ F + +L
Sbjct: 213 TETFGVKAL 221
>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
Catecholate-Siderophore Binding Protein Vctp From Vibrio
Cholerae
Length = 292
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 98 PLGKELMEECAKNVPS----ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEA 153
P + +E +K P+ A QGY E++ RN+G A+ P VEA
Sbjct: 87 PRASKSYDELSKIAPTIVFAAEADQGY----------WESTQQQWRNLGKVFAIEPAVEA 136
Query: 154 LIVSVDTQ 161
I VD Q
Sbjct: 137 KIEQVDAQ 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,742,130
Number of Sequences: 62578
Number of extensions: 269022
Number of successful extensions: 849
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 66
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)