Query 027096
Match_columns 228
No_of_seqs 142 out of 1791
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 8.4E-43 2.9E-47 294.0 23.7 221 7-227 217-447 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 1.1E-41 3.8E-46 287.8 23.3 217 8-227 231-454 (548)
3 3rix_A Luciferase, luciferin 4 100.0 7E-42 2.4E-46 289.2 21.8 217 8-227 229-452 (550)
4 4fuq_A Malonyl COA synthetase; 100.0 4.1E-41 1.4E-45 281.6 19.1 218 5-227 188-412 (503)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.5E-41 1.2E-45 284.2 15.7 220 5-227 215-443 (539)
6 3tsy_A Fusion protein 4-coumar 100.0 4E-40 1.4E-44 294.5 21.7 221 7-227 264-494 (979)
7 1pg4_A Acetyl-COA synthetase; 100.0 5.3E-40 1.8E-44 282.4 20.4 221 6-227 291-530 (652)
8 3o83_A Peptide arylation enzym 100.0 5.1E-41 1.8E-45 283.5 13.7 220 5-227 224-452 (544)
9 3etc_A AMP-binding protein; ad 100.0 1.2E-39 4E-44 276.9 21.4 216 6-227 259-488 (580)
10 3e7w_A D-alanine--poly(phospho 100.0 1.5E-39 5.2E-44 272.7 21.7 220 5-227 176-411 (511)
11 3fce_A D-alanine--poly(phospho 100.0 4.9E-40 1.7E-44 275.7 18.6 220 5-227 177-412 (512)
12 1v25_A Long-chain-fatty-acid-C 100.0 2.1E-39 7.3E-44 273.4 22.4 218 6-227 212-448 (541)
13 3g7s_A Long-chain-fatty-acid-- 100.0 8.2E-40 2.8E-44 276.5 18.6 221 5-227 213-452 (549)
14 3r44_A Fatty acyl COA syntheta 100.0 1.1E-39 3.8E-44 273.8 19.0 217 5-227 203-426 (517)
15 2v7b_A Benzoate-coenzyme A lig 100.0 2.1E-39 7.1E-44 272.9 20.3 218 5-227 217-442 (529)
16 4gr5_A Non-ribosomal peptide s 100.0 2E-39 7E-44 275.1 20.1 217 6-227 247-482 (570)
17 3c5e_A Acyl-coenzyme A synthet 100.0 3.1E-39 1.1E-43 273.9 21.0 216 6-227 240-469 (570)
18 4dg8_A PA1221; ANL superfamily 100.0 5.8E-39 2E-43 274.3 22.2 218 5-227 196-432 (620)
19 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.7E-39 1.6E-43 269.3 20.0 214 6-227 187-415 (504)
20 3l8c_A D-alanine--poly(phospho 100.0 6.6E-39 2.3E-43 269.4 19.0 218 8-227 183-416 (521)
21 1ry2_A Acetyl-coenzyme A synth 100.0 5.8E-39 2E-43 276.3 18.7 222 6-227 297-539 (663)
22 3nyq_A Malonyl-COA ligase; A/B 100.0 7.1E-39 2.4E-43 268.2 15.0 218 5-227 188-419 (505)
23 3rg2_A Enterobactin synthase c 100.0 1.7E-38 5.9E-43 271.7 17.6 220 5-227 217-447 (617)
24 3ipl_A 2-succinylbenzoate--COA 100.0 5.6E-38 1.9E-42 262.6 18.8 211 5-227 196-411 (501)
25 1amu_A GRSA, gramicidin synthe 100.0 8E-38 2.7E-42 264.9 19.0 212 5-227 215-443 (563)
26 3ivr_A Putative long-chain-fat 100.0 1E-37 3.4E-42 261.5 17.3 212 5-227 193-413 (509)
27 3gqw_A Fatty acid AMP ligase; 100.0 1.8E-37 6.1E-42 263.5 16.3 219 7-227 212-474 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 3E-38 1E-42 269.0 11.0 220 5-227 200-471 (590)
29 2vsq_A Surfactin synthetase su 100.0 1.5E-36 5.1E-41 277.8 19.8 218 5-227 639-874 (1304)
30 3ite_A SIDN siderophore synthe 100.0 2E-36 6.9E-41 256.4 18.1 214 7-227 218-440 (562)
31 3qov_A Phenylacetate-coenzyme 100.0 2.8E-36 9.7E-41 248.2 17.6 210 7-227 124-344 (436)
32 2y27_A Phenylacetate-coenzyme 100.0 3.8E-35 1.3E-39 241.6 17.0 209 7-227 128-346 (437)
33 2y4o_A Phenylacetate-coenzyme 100.0 6.6E-35 2.3E-39 240.5 17.2 209 7-227 130-348 (443)
34 3t5a_A Long-chain-fatty-acid-- 100.0 2.4E-35 8.1E-40 245.4 13.0 204 6-212 217-480 (480)
35 4gs5_A Acyl-COA synthetase (AM 100.0 9.1E-35 3.1E-39 233.3 13.4 195 4-227 69-263 (358)
36 3hgu_A EHPF; phenazine, antibi 100.0 2E-28 6.9E-33 197.4 14.8 201 6-222 128-368 (369)
37 4eql_A 4-substituted benzoates 98.5 1.9E-07 6.5E-12 78.4 7.4 125 86-227 296-438 (581)
38 4b2g_A GH3-1 auxin conjugating 98.5 2E-07 7E-12 78.4 6.2 125 86-227 301-450 (609)
39 4epl_A Jasmonic acid-amido syn 98.3 1.1E-06 3.7E-11 73.7 7.4 126 86-227 301-445 (581)
40 3g7s_A Long-chain-fatty-acid-- 82.0 6.6 0.00023 32.6 8.5 66 8-75 72-138 (549)
41 1v25_A Long-chain-fatty-acid-C 81.5 6.9 0.00023 32.5 8.4 67 7-75 66-133 (541)
42 3c5e_A Acyl-coenzyme A synthet 80.8 4.8 0.00017 33.7 7.2 66 8-75 94-160 (570)
43 2v7b_A Benzoate-coenzyme A lig 80.2 6.6 0.00023 32.4 7.8 66 7-74 67-133 (529)
44 3rix_A Luciferase, luciferin 4 79.8 5.8 0.0002 33.0 7.4 66 8-75 70-136 (550)
45 3ni2_A 4-coumarate:COA ligase; 79.4 6.9 0.00023 32.4 7.7 65 8-74 69-134 (536)
46 3ivr_A Putative long-chain-fat 78.4 8.4 0.00029 31.6 7.9 65 8-74 51-116 (509)
47 3r44_A Fatty acyl COA syntheta 77.4 10 0.00035 31.3 8.1 63 8-72 63-126 (517)
48 2d1s_A Luciferase, luciferin 4 77.1 6.3 0.00022 32.8 6.8 65 8-74 72-137 (548)
49 3ezx_A MMCP 1, monomethylamine 75.7 20 0.00068 25.9 10.8 91 14-106 93-194 (215)
50 1amu_A GRSA, gramicidin synthe 74.9 13 0.00044 31.1 8.1 65 8-74 84-149 (563)
51 4fuq_A Malonyl COA synthetase; 74.5 11 0.00037 31.0 7.5 62 8-71 48-110 (503)
52 1t5h_X 4-chlorobenzoyl COA lig 72.9 13 0.00043 30.5 7.5 66 8-75 49-117 (504)
53 3etc_A AMP-binding protein; ad 72.8 10 0.00035 31.9 7.0 61 7-69 105-166 (580)
54 1ry2_A Acetyl-coenzyme A synth 72.5 12 0.0004 32.1 7.4 62 7-70 133-195 (663)
55 4gr5_A Non-ribosomal peptide s 68.9 17 0.00059 30.3 7.6 61 8-70 120-181 (570)
56 1pg4_A Acetyl-COA synthetase; 68.3 14 0.00048 31.5 7.0 60 8-69 127-187 (652)
57 3l8c_A D-alanine--poly(phospho 65.6 15 0.00052 30.1 6.6 60 8-69 49-109 (521)
58 3o83_A Peptide arylation enzym 64.9 18 0.00063 29.9 7.0 60 8-69 75-135 (544)
59 1mdb_A 2,3-dihydroxybenzoate-A 64.8 18 0.00063 29.9 6.9 60 8-69 70-130 (539)
60 3kxw_A Saframycin MX1 syntheta 63.8 27 0.00094 29.1 7.9 67 8-76 60-130 (590)
61 3gqw_A Fatty acid AMP ligase; 62.1 35 0.0012 28.2 8.2 66 8-75 69-142 (576)
62 3tsy_A Fusion protein 4-coumar 55.9 30 0.001 31.1 7.1 62 8-71 108-170 (979)
63 3fce_A D-alanine--poly(phospho 54.3 34 0.0012 27.9 6.8 59 8-68 46-105 (512)
64 3e7w_A D-alanine--poly(phospho 53.8 26 0.00089 28.7 5.9 60 7-68 46-106 (511)
65 3t5a_A Long-chain-fatty-acid-- 53.5 34 0.0011 27.6 6.5 66 9-77 79-148 (480)
66 3ipl_A 2-succinylbenzoate--COA 52.5 54 0.0019 26.6 7.7 56 12-69 47-103 (501)
67 3rg2_A Enterobactin synthase c 51.7 43 0.0015 28.2 7.1 60 8-69 70-130 (617)
68 4dg8_A PA1221; ANL superfamily 47.6 69 0.0024 27.1 7.7 59 8-68 72-131 (620)
69 3ite_A SIDN siderophore synthe 46.1 76 0.0026 26.2 7.7 59 8-69 75-134 (562)
70 3qan_A 1-pyrroline-5-carboxyla 36.7 95 0.0032 25.9 6.7 47 13-59 173-224 (538)
71 1uzb_A 1-pyrroline-5-carboxyla 35.9 97 0.0033 25.6 6.6 77 12-96 173-260 (516)
72 3nyq_A Malonyl-COA ligase; A/B 35.9 78 0.0027 25.8 6.1 59 10-70 65-124 (505)
73 4f9i_A Proline dehydrogenase/d 35.2 96 0.0033 28.3 6.8 67 12-78 666-743 (1026)
74 2vsq_A Surfactin synthetase su 33.9 1.1E+02 0.0038 28.5 7.3 61 8-70 509-570 (1304)
75 2o2p_A Formyltetrahydrofolate 33.0 1.3E+02 0.0045 24.9 7.0 66 13-78 179-255 (517)
76 1wnd_A Putative betaine aldehy 32.2 1.1E+02 0.0038 25.1 6.4 78 12-97 159-246 (495)
77 1uxt_A Glyceraldehyde-3-phosph 31.3 1.3E+02 0.0044 24.8 6.6 86 13-109 158-253 (501)
78 2imp_A Lactaldehyde dehydrogen 30.4 1.7E+02 0.0057 23.9 7.1 77 13-97 143-230 (479)
79 1o04_A Aldehyde dehydrogenase, 29.6 1.5E+02 0.0053 24.3 6.8 77 12-96 158-245 (500)
80 2w8n_A Succinate-semialdehyde 29.0 1.5E+02 0.005 24.3 6.6 57 13-69 147-210 (487)
81 1bxs_A Aldehyde dehydrogenase; 28.7 1.6E+02 0.0056 24.2 6.8 77 12-96 159-246 (501)
82 4e3x_A Delta-1-pyrroline-5-car 28.4 1.8E+02 0.0062 24.4 7.1 87 14-109 202-300 (563)
83 2ve5_A BADH, betaine aldehyde 27.7 1.8E+02 0.0063 23.7 7.0 66 13-78 143-219 (490)
84 3k2w_A Betaine-aldehyde dehydr 27.0 2.1E+02 0.0071 23.5 7.2 78 12-97 148-236 (497)
85 1t90_A MMSDH, probable methylm 27.0 2.1E+02 0.0073 23.3 7.2 78 12-97 141-228 (486)
86 3my7_A Alcohol dehydrogenase/a 26.9 2.4E+02 0.0082 22.7 7.4 66 14-79 105-185 (452)
87 1a4s_A ALDH, betaine aldehyde 26.3 2.5E+02 0.0086 23.1 7.5 78 12-97 155-242 (503)
88 2i2x_B MTAC, methyltransferase 26.2 2E+02 0.0067 21.2 6.9 87 14-104 124-219 (258)
89 1smp_I Erwinia chrysanthemi in 25.6 80 0.0027 19.7 3.4 27 189-215 55-83 (101)
90 3ek1_A Aldehyde dehydrogenase; 24.4 2.2E+02 0.0074 23.5 6.8 65 14-78 170-245 (504)
91 1euh_A NADP dependent non phos 23.5 3E+02 0.01 22.4 9.3 88 12-110 143-241 (475)
92 3r31_A BADH, betaine aldehyde 23.3 3.2E+02 0.011 22.6 8.0 76 13-96 151-236 (517)
93 3ju8_A Succinylglutamic semial 21.8 2.5E+02 0.0085 23.0 6.7 67 12-78 139-215 (490)
94 3etf_A Putative succinate-semi 21.7 3.1E+02 0.011 22.1 7.2 78 12-97 126-213 (462)
95 1jiw_I Proteinase inhibitor; p 21.2 94 0.0032 19.6 3.1 28 188-215 57-86 (106)
96 3zrp_A Serine-pyruvate aminotr 21.0 2.7E+02 0.0093 21.0 7.4 54 10-66 74-132 (384)
97 2ra9_A Uncharacterized protein 20.8 40 0.0014 22.8 1.4 12 200-211 28-39 (150)
98 4e4g_A Methylmalonate-semialde 20.4 3.7E+02 0.013 22.2 7.9 88 12-107 162-260 (521)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=8.4e-43 Score=293.97 Aligned_cols=221 Identities=44% Similarity=0.720 Sum_probs=199.9
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 86 (228)
.++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........+
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCC
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCC
Confidence 56788999999999999999997778899999999999999999999999999999999999999999999877777788
Q ss_pred CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
+++|.+++||+++++++.+++++.||++++++.||+||++.+++.+.. .......+++|+|+++++++++|++++++
T Consensus 297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~ 376 (536)
T 3ni2_A 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS 376 (536)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB
T ss_pred ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC
Confidence 999999999999999999999999999999999999999987655421 12234567899999999999999888999
Q ss_pred CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++.|+.|||+|+|+.++.. +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 377 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 447 (536)
T 3ni2_A 377 LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA 447 (536)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHH
T ss_pred CCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHH
Confidence 9999999999999999873 344566789999999999999999999999999999999999984
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-41 Score=287.75 Aligned_cols=217 Identities=38% Similarity=0.672 Sum_probs=195.0
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 87 (228)
++++++|++++.+|++|..++...++.++ .|+++++.+.+++..+++.++++++|+++++|++++.+.+........++
T Consensus 231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 309 (548)
T 2d1s_A 231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS 309 (548)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc
Confidence 67889999999999999999987667777 99999999989999999999999999999999999999987665666789
Q ss_pred CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 027096 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (228)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g 167 (228)
++|.+++||+++++++.+++++.|++.++++.||+||++.++...... ....+++|+|+++++++++|++++++++.|
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN 387 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCC
Confidence 999999999999999999999999889999999999999877654322 245678999999999999998889999999
Q ss_pred CceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 168 QLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 168 ~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+.|||+|+|+.++.. +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 388 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~ 454 (548)
T 2d1s_A 388 RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPA 454 (548)
T ss_dssp CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHH
T ss_pred CCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHH
Confidence 999999999998873 334566789999999999999999999999999999999999984
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=7e-42 Score=289.17 Aligned_cols=217 Identities=41% Similarity=0.674 Sum_probs=180.5
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 87 (228)
+++.++|++++.+|++|..++.. ++.+++.|+++++.+.+++..+++.++++++|+++++|+++..+++........++
T Consensus 229 ~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 307 (550)
T 3rix_A 229 NQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS 307 (550)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT
T ss_pred ccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcc
Confidence 57889999999999999999976 77889999999999999999999999999999999999999999988776777889
Q ss_pred CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 027096 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (228)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g 167 (228)
++|.+++||+++++++.+++++.++...+++.||+||++.++...... ....+++|+|+++++++|+|++++++++.|
T Consensus 308 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999999656699999999999877665443 345678999999999999998889999999
Q ss_pred CceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 168 QLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 168 ~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+.|||+|+|+.++.. +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 386 ~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (550)
T 3rix_A 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 452 (550)
T ss_dssp CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------
T ss_pred CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHH
Confidence 999999999999873 344566789999999999999999999999999999999999985
No 4
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.1e-41 Score=281.61 Aligned_cols=218 Identities=30% Similarity=0.450 Sum_probs=194.7
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
...++++++|++++.+|++|.+++...++.+++.|+++++.+.+++..+++.++ ++|+++++|+++..+++.......
T Consensus 188 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~ 265 (503)
T 4fuq_A 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE 265 (503)
T ss_dssp HHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred HHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc
Confidence 456789999999999999999998766778899999999999999999999998 899999999999999998777777
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~ 164 (228)
.++++|.+++||+++++++.+++.+.+ +.+++|.||+||++..+.... ......+++|+|+++++++++|+++++++
T Consensus 266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~ 342 (503)
T 4fuq_A 266 TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKEL 342 (503)
T ss_dssp TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBC
T ss_pred chhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCC
Confidence 788999999999999999999999988 689999999999987654322 22345678999999999999998899999
Q ss_pred CCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 165 PPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 165 ~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+.|+.|||+|+|+.++. .+...|..+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 343 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 412 (503)
T 4fuq_A 343 PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPK 412 (503)
T ss_dssp CTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHH
T ss_pred cCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence 99999999999999987 3455666789999999999999999999999999999999999984
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.5e-41 Score=284.23 Aligned_cols=220 Identities=24% Similarity=0.325 Sum_probs=189.5
Q ss_pred cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
...++++++|++++.+|++|.+++.. .++.+|+.|+++++.+.+++..+++.++++++|+++++|+++..+++......
T Consensus 215 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 294 (539)
T 1mdb_A 215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR 294 (539)
T ss_dssp HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred HHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC
Confidence 34578899999999999999999874 57899999999999999999999999999999999999999999987655455
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCC-ceEEEEeCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDTQK 162 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~d~~~~~ 162 (228)
..+++||.+++||+++++++.+++++.+ +.++++.||+||++..+. ...........++|+|+++ .+++++| ++++
T Consensus 295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~ 371 (539)
T 1mdb_A 295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDR 371 (539)
T ss_dssp CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSC
T ss_pred CCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCC
Confidence 6789999999999999999999999988 799999999999653322 2111111234578999976 5899999 8899
Q ss_pred CCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 163 PLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++.|+.|||+|+|+.++.. +...|..+|||+|||+|++++||.+++.||.||+||++|++|+|.
T Consensus 372 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 443 (539)
T 1mdb_A 372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443 (539)
T ss_dssp BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHH
Confidence 99999999999999999873 344566789999999999999999999999999999999999984
No 6
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4e-40 Score=294.54 Aligned_cols=221 Identities=44% Similarity=0.740 Sum_probs=188.2
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 86 (228)
.++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........+
T Consensus 264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 343 (979)
T 3tsy_A 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL 343 (979)
T ss_dssp SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCC
T ss_pred cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCc
Confidence 56788999999999999999997778899999999999999999999999999999999999999999998877677778
Q ss_pred CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
+++|.+++||+++++++.+++.+.||++++++.||+||++.+++.... .......+++|+|+++++++|+|++++++
T Consensus 344 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~ 423 (979)
T 3tsy_A 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS 423 (979)
T ss_dssp TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC
Confidence 999999999999999999999999999999999999999987655421 12233557899999999999999888999
Q ss_pred CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++.|+.|||+|+|+.++.. +...++.++||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 424 ~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~ 494 (979)
T 3tsy_A 424 LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPA 494 (979)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------
T ss_pred CCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHH
Confidence 9999999999999999873 345566789999999999999999999999999999999999985
No 7
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=5.3e-40 Score=282.45 Aligned_cols=221 Identities=22% Similarity=0.299 Sum_probs=189.0
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~- 80 (228)
..++++++|++++.+|++|+.++...++.+|++|+++++.++ +++..+++.++++++|+++++|++++.+.+...
T Consensus 291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 457899999999999999999986558899999999999864 589999999999999999999999999987653
Q ss_pred -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEe
Q 027096 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157 (228)
Q Consensus 81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d 157 (228)
....++++||.++++||++++++.+++.+.++ ++++++.||+||++.++............+++|+|+++++++|+|
T Consensus 371 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d 450 (652)
T 1pg4_A 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD 450 (652)
T ss_dssp GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC
T ss_pred ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC
Confidence 23456889999999999999999999999884 288999999999997665543222234567899999999999999
Q ss_pred CCCCCCCCCCCceEEEEec--Ccccccc-------cccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096 158 VDTQKPLPPNQLGEIWLRG--PNMMRAT-------KLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226 (228)
Q Consensus 158 ~~~~~~~~~g~~Gel~v~~--~~~~~~~-------~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p 226 (228)
+++++++.|+.|||+|++ |.++..+ ...+ ..+|||+|||+|++|+||.++++||+||+||++|++|+|
T Consensus 451 -~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 529 (652)
T 1pg4_A 451 -NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529 (652)
T ss_dssp -TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEH
T ss_pred -CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECH
Confidence 789999999999999999 5565522 1121 137899999999999999999999999999999999998
Q ss_pred C
Q 027096 227 N 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 530 ~ 530 (652)
T 1pg4_A 530 A 530 (652)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.1e-41 Score=283.50 Aligned_cols=220 Identities=24% Similarity=0.343 Sum_probs=180.4
Q ss_pred cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
...++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++......
T Consensus 224 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 303 (544)
T 3o83_A 224 AEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK 303 (544)
T ss_dssp HHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred HHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc
Confidence 45678999999999999999988864 47889999999999999999999999999999999999999999988766666
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQK 162 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~ 162 (228)
..++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+...... ......++|+|+ ++++++++| ++++
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~ 380 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQYR 380 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSC
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCCC
Confidence 6788999999999999999999999988 79999999999987544332211 122345789996 899999999 8999
Q ss_pred CCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 163 PLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++.|+.|||+|+|+.++.. +...|+.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 381 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (544)
T 3o83_A 381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASE 452 (544)
T ss_dssp BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------
T ss_pred CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHH
Confidence 99999999999999998873 445566789999999999999999999999999999999999985
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-39 Score=276.94 Aligned_cols=216 Identities=23% Similarity=0.305 Sum_probs=187.6
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc--CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
.++++++++++++.+|++|..+++..++.++..|+++++. +.+++..+++.++++++|+++++|++++.+.+. ....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~ 337 (580)
T 3etc_A 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSH 337 (580)
T ss_dssp TTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC--
T ss_pred HhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-cccc
Confidence 4578899999999999999988887678899999999987 568999999999999999999999999999876 3445
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
..+++||.++++||++++++.+++++.+ +.++++.||+||++.++...+.. ....+++|+|+++++++|+| +++++
T Consensus 338 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~ 413 (580)
T 3etc_A 338 YNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRL 413 (580)
T ss_dssp -CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCB
T ss_pred CCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCC
Confidence 6788999999999999999999999988 78999999999998776654432 34567899999999999999 77999
Q ss_pred CCCCCceEEEEec-----Ccccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLRG-----PNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~~-----~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++.|+.|||+|++ +.++. .+.+.+ .+|||+|||+|++|+||.++++||.||+||++|++|+|.
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~ 488 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHH
Confidence 9999999999997 45554 334445 479999999999999999999999999999999999984
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.5e-39 Score=272.66 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=191.5
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~ 81 (228)
...++++++|++++.+|++|..++.. ++.+++.|+++++.+. +++..+++.++++++|+++++|++++.++..+..
T Consensus 176 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 254 (511)
T 3e7w_A 176 CADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF 254 (511)
T ss_dssp HHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC
T ss_pred HHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence 35678899999999999999999876 8899999999999875 6899999999999999999999999999988776
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV 158 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~ 158 (228)
....++++|.++++|+++++++.+++.+.|+++++++.||+||++.+++...... ......++|+|+++++++++|
T Consensus 255 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d- 333 (511)
T 3e7w_A 255 SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD- 333 (511)
T ss_dssp STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-
T ss_pred ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-
Confidence 7777899999999999999999999999999999999999999988765432211 123446799999999999999
Q ss_pred CCCCCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++++++.|+.|||+|+|+.++..+ ...+ +.++||+|||+|++ +||.+++.||.||+||++|++|+|.
T Consensus 334 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~ 411 (511)
T 3e7w_A 334 EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELE 411 (511)
T ss_dssp TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHH
T ss_pred CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHH
Confidence 7899999999999999999998733 2233 12237999999999 6899999999999999999999984
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4.9e-40 Score=275.75 Aligned_cols=220 Identities=19% Similarity=0.230 Sum_probs=193.6
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~ 81 (228)
...++++++|++++.+|++|..++.. ++.+++.|+++++.+. +++..+++.++++++|++.++|++++.++.....
T Consensus 177 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 255 (512)
T 3fce_A 177 VEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF 255 (512)
T ss_dssp HHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC
T ss_pred HHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc
Confidence 45678999999999999999999876 8899999999999876 6899999999999999999999999999887776
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV 158 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~ 158 (228)
....++++|.++++|+++++++.+++.+.|+++++++.||+||++.+++...... ......++|+|.++++++++|
T Consensus 256 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d- 334 (512)
T 3fce_A 256 SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK- 334 (512)
T ss_dssp STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-
T ss_pred cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-
Confidence 7778899999999999999999999999999999999999999998766533221 122446799999999999999
Q ss_pred CCCCCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++++++.|+.|||+|+|+.++..+ ...+ +.++||+|||+|++ +||.+++.||.||+||++|++|+|.
T Consensus 335 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~ 412 (512)
T 3fce_A 335 EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELE 412 (512)
T ss_dssp SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHH
T ss_pred CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHH
Confidence 8899999999999999999998733 2222 35679999999999 7999999999999999999999984
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.1e-39 Score=273.44 Aligned_cols=218 Identities=28% Similarity=0.386 Sum_probs=187.4
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
..++++++|++++.+|++|.+++.. ++.+++.|+++++.+. +++..+++.++++++|+++++|+++..+++.......
T Consensus 212 ~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 290 (541)
T 1v25_A 212 DGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH 290 (541)
T ss_dssp TTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC
Confidence 4567889999999999999999865 7788999999999864 7999999999999999999999999999876544455
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---------CCCCCCccccCCCceEEE
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI 155 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~i 155 (228)
.++++|.+++||+++++++.+++ +.+ ++++++.||+||++.+++....... .....++|+|+++++++|
T Consensus 291 ~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 368 (541)
T 1v25_A 291 RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV 368 (541)
T ss_dssp CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEE
T ss_pred cchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEE
Confidence 67899999999999999999999 666 7999999999999987765432210 012468999999999999
Q ss_pred EeCCCCCCCCC--CCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096 156 VSVDTQKPLPP--NQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226 (228)
Q Consensus 156 ~d~~~~~~~~~--g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p 226 (228)
+| +++++++. ++.|||+|+|+.++. .+...+..+|||+|||+|++|+||.+++.||+||+||++|++|+|
T Consensus 369 ~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p 447 (541)
T 1v25_A 369 AD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447 (541)
T ss_dssp EC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEH
T ss_pred EC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECH
Confidence 99 77888884 368999999999986 344556568999999999999999999999999999999999998
Q ss_pred C
Q 027096 227 N 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 448 ~ 448 (541)
T 1v25_A 448 V 448 (541)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.2e-40 Score=276.47 Aligned_cols=221 Identities=29% Similarity=0.463 Sum_probs=181.3
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC-
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK- 83 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~- 83 (228)
...++++++|++++.+|++|..++.. ++.++..|+++++.+.+++..+++.++++++|+++++|++++.+++......
T Consensus 213 ~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 291 (549)
T 3g7s_A 213 AVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK 291 (549)
T ss_dssp HHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC
T ss_pred HHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc
Confidence 35678899999999999999999987 8889999999999999999999999999999999999999999987643333
Q ss_pred -CCCCCceEEEEcccCCCHHHHHHHHHh----CC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEE
Q 027096 84 -FDLSSLKLVGSGAAPLGKELMEECAKN----VP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156 (228)
Q Consensus 84 -~~~~~lr~~~~~G~~l~~~~~~~~~~~----~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~ 156 (228)
..++++|.+++||+++++++.+++.+. ++ ..++++.||+||++.+++...... .....++|+|+++++++++
T Consensus 292 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~ 370 (549)
T 3g7s_A 292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVI 370 (549)
T ss_dssp CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEE
T ss_pred cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEE
Confidence 567899999999999999999999987 53 389999999999998876654332 2345789999999999999
Q ss_pred eCCCCCCCCCCCceEEEEecCccccc-------ccccc--cCCC--eEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096 157 SVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 225 (228)
Q Consensus 157 d~~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~--~~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~ 225 (228)
|++++++++.|+.|||+|+|+.++.. +...| +.+| ||+|||+|++++||.++++||.||+||++|++|+
T Consensus 371 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~ 450 (549)
T 3g7s_A 371 SLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIA 450 (549)
T ss_dssp CSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------
T ss_pred eCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEEC
Confidence 98899999999999999999999872 33333 2456 9999999999999999999999999999999999
Q ss_pred cC
Q 027096 226 SN 227 (228)
Q Consensus 226 p~ 227 (228)
|.
T Consensus 451 p~ 452 (549)
T 3g7s_A 451 PF 452 (549)
T ss_dssp CH
T ss_pred HH
Confidence 84
No 14
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-39 Score=273.80 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=191.4
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
...++++++|++++.+|++|..++...++. ++.|+++++.+.+++..+++.++++++|++.++|++++.+.+.+.....
T Consensus 203 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 281 (517)
T 3r44_A 203 ASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL 281 (517)
T ss_dssp HHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC
T ss_pred HHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC
Confidence 456789999999999999999999874444 4599999999999999999999999999999999999999887655566
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~ 164 (228)
.++++|.+++||+++++++.+++.+. +.++++.||+||++..++...........+++|+|.++++++++| ++++++
T Consensus 282 ~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~ 358 (517)
T 3r44_A 282 DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIR 358 (517)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEE
T ss_pred CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCC
Confidence 78899999999999999999999887 789999999999988776654443345667899999999999999 788888
Q ss_pred CCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 165 PPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 165 ~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+.| .|||+|+|+.++.. +...| .+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 359 ~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 426 (517)
T 3r44_A 359 EHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPA 426 (517)
T ss_dssp SSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHH
T ss_pred CCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHH
Confidence 888 89999999999873 34445 579999999999999999999999999999999999984
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.1e-39 Score=272.92 Aligned_cols=218 Identities=20% Similarity=0.301 Sum_probs=185.2
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
...++++++|++++.+|++|..++...++.++..|+++++. +.+++..+++.++++++|+++++|+++..+++......
T Consensus 217 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 296 (529)
T 2v7b_A 217 KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA 296 (529)
T ss_dssp CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCC
T ss_pred hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccc
Confidence 34578899999999999999999987677899999999987 56899999999999999999999999999987654333
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
....++|.++++|+++++++.+++++.+ ++++++.||+||++.++...... ....+++|+|+++++++++| +++++
T Consensus 297 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~ 372 (529)
T 2v7b_A 297 RADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHA 372 (529)
T ss_dssp GGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCB
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCC
Confidence 2123899999999999999999999988 78999999999997766554322 23557899999999999999 88999
Q ss_pred CCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++.|+.|||+|+|+.++..+ ...+ .++||+|||+++++++|.+++.||.||+||++|++|+|.
T Consensus 373 ~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~ 442 (529)
T 2v7b_A 373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPV 442 (529)
T ss_dssp CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHH
T ss_pred CCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHH
Confidence 99999999999999988733 3334 378999999999999999999999999999999999984
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2e-39 Score=275.13 Aligned_cols=217 Identities=23% Similarity=0.264 Sum_probs=172.9
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
..++++++|++++.+|++|..+... ++.+++.|+++++.+ .+++..+++.++++++|++.++|++++.+.+...
T Consensus 247 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--- 322 (570)
T 4gr5_A 247 DYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--- 322 (570)
T ss_dssp CSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---
T ss_pred hhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---
Confidence 4567889999999999999777665 788999999999986 4789999999999999999999999999987532
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC--CCCCCCCccccCCCceEEEEeCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVDTQ 161 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~~~ 161 (228)
..+++||.+++||+++++++.+++.+.+++.++++.||+||++.++....... ......++|+|+++++++|+| +++
T Consensus 323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~ 401 (570)
T 4gr5_A 323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDL 401 (570)
T ss_dssp GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTS
T ss_pred hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCC
Confidence 34788999999999999999999999998999999999999988765433221 123345799999999999999 889
Q ss_pred CCCCCCCceEEEEecCcccccc-------ccccc--------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096 162 KPLPPNQLGEIWLRGPNMMRAT-------KLTID--------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226 (228)
Q Consensus 162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~~--------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p 226 (228)
++++.|+.|||+|+|+.++..+ .+.|. .++||+|||+|++|+||.++++||+||+||++|+||+|
T Consensus 402 ~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p 481 (570)
T 4gr5_A 402 KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP 481 (570)
T ss_dssp CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------
T ss_pred CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCH
Confidence 9999999999999999998732 33332 24799999999999999999999999999999999998
Q ss_pred C
Q 027096 227 N 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 482 ~ 482 (570)
T 4gr5_A 482 G 482 (570)
T ss_dssp -
T ss_pred H
Confidence 5
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.1e-39 Score=273.87 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=189.0
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
..++++++|++++.+|++|..++...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.+.+.. ...
T Consensus 240 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~ 318 (570)
T 3c5e_A 240 GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSS 318 (570)
T ss_dssp TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTT
T ss_pred hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccc
Confidence 45788999999999999999998866889999999999986 689999999999999999999999999998763 334
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
..++++|.++++|+++++++.+++++.+ ++++++.||+||++.++...... ....+++|+|+++++++|+| +++++
T Consensus 319 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~~ 394 (570)
T 3c5e_A 319 YKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGNV 394 (570)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSCB
T ss_pred cccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCCC
Confidence 5678999999999999999999999988 78999999999998765543322 23557899999999999999 78999
Q ss_pred CCCCCceEEEEe-----cCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLR-----GPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~-----~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++.|+.|||+|+ |+.++.. +...+ .++||+|||+|++|+||.+++.||.||+||++|++|+|.
T Consensus 395 ~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~ 469 (570)
T 3c5e_A 395 LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS 469 (570)
T ss_dssp CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHH
T ss_pred CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHH
Confidence 999999999999 7777763 33344 478999999999999999999999999999999999984
No 18
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.8e-39 Score=274.30 Aligned_cols=218 Identities=20% Similarity=0.275 Sum_probs=187.0
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~ 82 (228)
...++++++|++++.+|++|..++.. ++.+|+.|+++++.+ .+++..+.+.++++++|+++++|++++.+.+..
T Consensus 196 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--- 271 (620)
T 4dg8_A 196 QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD--- 271 (620)
T ss_dssp CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---
T ss_pred HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---
Confidence 34678899999999999999999887 899999999999964 579999999999999999999999999998742
Q ss_pred CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC--CCCCCCCCccccCCCceEEEEeCCC
Q 027096 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVSVDT 160 (228)
Q Consensus 83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~--~~~~~~~~~g~p~~~~~~~i~d~~~ 160 (228)
...+++||.+++|||++++++.+++.+.+++++++|.||+||++.+++..... .......++|+|+++++++|+| ++
T Consensus 272 ~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~ 350 (620)
T 4dg8_A 272 PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EH 350 (620)
T ss_dssp GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TT
T ss_pred hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-cc
Confidence 34578899999999999999999999888899999999999999876543221 1233456899999999999999 56
Q ss_pred CCC-CCCCCceEEEEecCccccc-------ccccccCC-------CeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096 161 QKP-LPPNQLGEIWLRGPNMMRA-------TKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 225 (228)
Q Consensus 161 ~~~-~~~g~~Gel~v~~~~~~~~-------~~~~~~~~-------~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~ 225 (228)
+++ ++.|+.|||+|+|+.++.. +.+.|..+ +||+|||+|++++||.++++||.||+||++|+||+
T Consensus 351 ~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~ 430 (620)
T 4dg8_A 351 GQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLD 430 (620)
T ss_dssp SCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEE
T ss_pred CCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcC
Confidence 655 8899999999999999873 23333221 79999999999999999999999999999999999
Q ss_pred cC
Q 027096 226 SN 227 (228)
Q Consensus 226 p~ 227 (228)
|.
T Consensus 431 ~~ 432 (620)
T 4dg8_A 431 LP 432 (620)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 19
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.7e-39 Score=269.26 Aligned_cols=214 Identities=20% Similarity=0.311 Sum_probs=185.0
Q ss_pred ccccC--CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--C
Q 027096 6 QETAG--ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--V 81 (228)
Q Consensus 6 ~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~ 81 (228)
..+++ .++|++++.+|++|..++...++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+.+... .
T Consensus 187 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 266 (504)
T 1t5h_X 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG 266 (504)
T ss_dssp HTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT
T ss_pred HhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc
Confidence 34566 7899999999999999986558899999999999999999999999999999999999999999987642 2
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ 161 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~ 161 (228)
....++++|.+++||+++++++.+++++.+ +.++++.||+||++ ++.... ....+++|.|.++++++++| +++
T Consensus 267 ~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~-~~~ 339 (504)
T 1t5h_X 267 SSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVR-IGG 339 (504)
T ss_dssp CCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEEC-TTS
T ss_pred ccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccc-cccccc----CCCCCccccCCCCCceeEEe-ccC
Confidence 445678999999999999999999999998 58899999999993 222222 23456899999999999999 555
Q ss_pred ---CCCCCCCceEEEEe-cCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 162 ---KPLPPNQLGEIWLR-GPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 162 ---~~~~~g~~Gel~v~-~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++++.|+.|||+|+ ++.++.. +.+.+ .+|||+|||+|++++||.+++.||.||+||++|++|+|.
T Consensus 340 ~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 415 (504)
T 1t5h_X 340 GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415 (504)
T ss_dssp CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHH
T ss_pred CCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHH
Confidence 89999999999999 8888752 33444 578999999999999999999999999999999999984
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=6.6e-39 Score=269.39 Aligned_cols=218 Identities=19% Similarity=0.214 Sum_probs=186.5
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
+++.+++++++.+|++|..++.. ++.++..|+++++.+. .++..+++.+.++++|++.++|+++..+.........
T Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 261 (521)
T 3l8c_A 183 FDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA 261 (521)
T ss_dssp TCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred cCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence 77889999999999999998876 7889999999999875 3899999999999999999999999999887766667
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ 161 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~ 161 (228)
.++++|.++++|+++++++.+++.+.++++++++.||+||++.+++...... ......++|+|+++++++|+| +++
T Consensus 262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g 340 (521)
T 3l8c_A 262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDG 340 (521)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTS
T ss_pred cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCc
Confidence 7899999999999999999999999999999999999999988765533211 112346799999999999999 889
Q ss_pred CCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 162 KPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
++++.|+.|||+|+|+.++..+ .+.| +.++||+|||+|++|++|.+++.||.||+||++|++|+|.
T Consensus 341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~ 416 (521)
T 3l8c_A 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELE 416 (521)
T ss_dssp CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHH
T ss_pred CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHH
Confidence 9999999999999999998733 2222 4568999999999999999999999999999999999984
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.8e-39 Score=276.30 Aligned_cols=222 Identities=20% Similarity=0.323 Sum_probs=188.5
Q ss_pred ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~- 80 (228)
..++++++|++++.+|++|+.++...++.+|+.|+++++.++ +++..+++.|+++++|+++++|++++.+.+...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 376 (663)
T 1ry2_A 297 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS 376 (663)
T ss_dssp HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc
Confidence 457899999999999999999986658899999999999864 589999999999999999999999999987654
Q ss_pred -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccC-CCCCCCCCCccccCCCceEEEE
Q 027096 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIV 156 (228)
Q Consensus 81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~-~~~~~~~~~~g~p~~~~~~~i~ 156 (228)
....++++||.++++||++++++.+++.+.++ ++++++.||+||++..+..... .......+++|+|+++++++|+
T Consensus 377 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~ 456 (663)
T 1ry2_A 377 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL 456 (663)
T ss_dssp SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEE
T ss_pred ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEE
Confidence 23457899999999999999999999999884 3899999999999876655432 1223456789999999999999
Q ss_pred eCCCCCCCCC-CCceEEEEecC--ccccc-------ccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096 157 SVDTQKPLPP-NQLGEIWLRGP--NMMRA-------TKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224 (228)
Q Consensus 157 d~~~~~~~~~-g~~Gel~v~~~--~~~~~-------~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v 224 (228)
|.+++++++. |+.|||+|+++ .++.. +...+ ..+|||+|||+|++++||.++++||+||+||++|++|
T Consensus 457 d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI 536 (663)
T 1ry2_A 457 DPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL 536 (663)
T ss_dssp CSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred cCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEc
Confidence 9548999988 99999999995 55542 11222 1378999999999999999999999999999999999
Q ss_pred ecC
Q 027096 225 TSN 227 (228)
Q Consensus 225 ~p~ 227 (228)
+|.
T Consensus 537 ~~~ 539 (663)
T 1ry2_A 537 STA 539 (663)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
No 22
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.1e-39 Score=268.19 Aligned_cols=218 Identities=29% Similarity=0.448 Sum_probs=184.4
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC--
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-- 82 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-- 82 (228)
...++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++.....
T Consensus 188 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp HHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred HHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 45678899999999999999999876688999999999999999999999999 889999999999999998743221
Q ss_pred -CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096 83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ 161 (228)
Q Consensus 83 -~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~ 161 (228)
...++++|.+++||+++++++.+++.+.+ +.+++|.||+||++.++...... ....+++|+|+++++++++| +++
T Consensus 267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~g 342 (505)
T 3nyq_A 267 LAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-EDG 342 (505)
T ss_dssp HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----
T ss_pred hhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CCC
Confidence 23467789999999999999999999987 78999999999998766544322 34557899999999999999 778
Q ss_pred CCCCC---CCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEeccc-CCceeecCeEeecC
Q 027096 162 KPLPP---NQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSN 227 (228)
Q Consensus 162 ~~~~~---g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~-~d~i~~~G~~v~p~ 227 (228)
++++. |+.|||+|+|+.++. .+...|..++||+|||+|++++||.++++||+ ||+||++|++|+|.
T Consensus 343 ~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~ 419 (505)
T 3nyq_A 343 TPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAG 419 (505)
T ss_dssp -CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHH
T ss_pred CCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHH
Confidence 88876 899999999999887 34456667899999999999999999999998 59999999999984
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.7e-38 Score=271.68 Aligned_cols=220 Identities=24% Similarity=0.368 Sum_probs=189.0
Q ss_pred cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-- 81 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-- 81 (228)
...++++++|++++.+|++|.+++.. .++.+++.|+++++.+..++..+++.++++++|++.++|+++..+++....
T Consensus 217 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 296 (617)
T 3rg2_A 217 VEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE 296 (617)
T ss_dssp HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc
Confidence 34678899999999999999888764 478899999999999889999999999999999999999999998775322
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT 160 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~ 160 (228)
....++++|.+++|||++++++.+++.+.+ +.+++|.||+||++..+...... ......++|.|+ ++.++.++| ++
T Consensus 297 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~ 373 (617)
T 3rg2_A 297 SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AE 373 (617)
T ss_dssp CTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TT
T ss_pred ccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CC
Confidence 233688999999999999999999999988 79999999999987554432211 112234688997 788999999 88
Q ss_pred CCCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 161 QKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 161 ~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++++.|+.|||+|+|+.++. .+...|..++||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 374 ~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~ 447 (617)
T 3rg2_A 374 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447 (617)
T ss_dssp SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHH
T ss_pred CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHH
Confidence 999999999999999999887 3455677889999999999999999999999999999999999984
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.6e-38 Score=262.60 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=180.9
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
...++++++|++++.+|++|.+++.. ++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+++......
T Consensus 196 ~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~- 273 (501)
T 3ipl_A 196 KESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP- 273 (501)
T ss_dssp HHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC-
T ss_pred HHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc-
Confidence 45678899999999999999999987 8899999999999999999999999999999999999999999988754333
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~ 164 (228)
.++|.+++||+++++++.+++.+. +.++++.||+||++..+.............++|+|+++++++++|++
T Consensus 274 --~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----- 344 (501)
T 3ipl_A 274 --YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----- 344 (501)
T ss_dssp --TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----
T ss_pred --CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----
Confidence 279999999999999999999884 78999999999998765544332222355789999999999999943
Q ss_pred CCCCceEEEEecCcccccccccc-----cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 165 PPNQLGEIWLRGPNMMRATKLTI-----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 165 ~~g~~Gel~v~~~~~~~~~~~~~-----~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
.|+.|||+|+|+.++..+.... ..+|||+|||+|+++++|.+++.||.||+||++|++|+|.
T Consensus 345 -~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~ 411 (501)
T 3ipl_A 345 -KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPY 411 (501)
T ss_dssp -SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHH
T ss_pred -CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHH
Confidence 4567999999999887332111 2578999999999999999999999999999999999984
No 25
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8e-38 Score=264.87 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=181.4
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~ 81 (228)
...++++++|++++.+|++|..++.. ++.+++.|+++++.+. +++..+++.++++++|+++++|+++..+...
T Consensus 215 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--- 290 (563)
T 1amu_A 215 ENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--- 290 (563)
T ss_dssp HHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---
T ss_pred HHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---
Confidence 35678899999999999999999876 7889999999999875 6899999999999999999999988776432
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC-CCCCCCCccccCCCceEEEEeCCC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDT 160 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~d~~~ 160 (228)
.+.++|.+++||+++++++.+++++. .++++.||+||++.++....... ......++|+|+++++++|+| ++
T Consensus 291 ---~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~ 363 (563)
T 1amu_A 291 ---RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-EN 363 (563)
T ss_dssp ---TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TT
T ss_pred ---ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CC
Confidence 35789999999999999999998774 68999999999988765543222 123456899999999999999 88
Q ss_pred CCCCCCCCceEEEEecCcccccc-------ccccc------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++++.|+.|||+|+|+.++..+ ...|. .++||+|||+|++|+||.++++||.||+||++|++|+|.
T Consensus 364 ~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~ 443 (563)
T 1amu_A 364 LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE 443 (563)
T ss_dssp SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred cCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHH
Confidence 99999999999999999988733 22332 346999999999999999999999999999999999984
No 26
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1e-37 Score=261.55 Aligned_cols=212 Identities=35% Similarity=0.520 Sum_probs=168.5
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 84 (228)
...++++++|++++.+|++|.+++... +.+++.|++.++...+++..+++.++++++|+++++|+++..+++.. ...
T Consensus 193 ~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~ 269 (509)
T 3ivr_A 193 VDAWRLTEADVNLGMLPLFHVTGLGLM-LTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APA 269 (509)
T ss_dssp HHHTTCCTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGG
T ss_pred HHhhCCCCCcEEEEeCCCcchhHHHHH-HHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--ccc
Confidence 456789999999999999999999874 44444455555555889999999999999999999999999998875 445
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~ 164 (228)
.++++|.++.+|++ ++.+++.+.++++++++.||+||++.+++...... ....+|+|+++++++++| ++++++
T Consensus 270 ~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~ 342 (509)
T 3ivr_A 270 QLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPL 342 (509)
T ss_dssp GGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBC
T ss_pred chhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc---CCCcccccCCCcEEEEEC-CCCCCC
Confidence 57899999999987 88899999998999999999999998776554322 224599999999999999 779999
Q ss_pred CCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEeccc--CCceeecCeEeecC
Q 027096 165 PPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQVTSN 227 (228)
Q Consensus 165 ~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~--~d~i~~~G~~v~p~ 227 (228)
+.|+.|||+|+|+.++.. +...| .+|||+|||+|++++||.+++.||. ||+||++|++|+|.
T Consensus 343 ~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~ 413 (509)
T 3ivr_A 343 PPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPA 413 (509)
T ss_dssp CTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------------
T ss_pred CCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHH
Confidence 999999999999998873 33445 4789999999999999999999999 99999999999985
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.8e-37 Score=263.50 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=186.4
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-- 80 (228)
.++++++|++++++|++|..|+...++.++..|+++++.+. +++..+++.++++++|+++++|++++.+.+...
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 291 (576)
T 3gqw_A 212 GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK 291 (576)
T ss_dssp TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH
T ss_pred ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc
Confidence 37899999999999999999998778888999999998764 588899999999999999999999988766433
Q ss_pred -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCCCCC----------------
Q 027096 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAGS---------------- 138 (228)
Q Consensus 81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~~~~---------------- 138 (228)
.....++++|.++++|+++++++.+++.+.|+ +.++++.||+||++.+++........
T Consensus 292 ~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (576)
T 3gqw_A 292 DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKA 371 (576)
T ss_dssp HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBC
T ss_pred ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcc
Confidence 23456889999999999999999999999875 68899999999999887654322110
Q ss_pred ----------CCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccccc------cccCCCeEEcCceEEEc
Q 027096 139 ----------RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKL------TIDKKGWVHTGDLGYFD 202 (228)
Q Consensus 139 ----------~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~~~------~~~~~~~~~TGD~~~~~ 202 (228)
....++|+|+++++++|+| +++++++.|+.|||+|+|+.++..+.. .+..+|||+|||+|++
T Consensus 372 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~- 449 (576)
T 3gqw_A 372 VAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL- 449 (576)
T ss_dssp CCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-
T ss_pred cccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-
Confidence 0112789999999999999 899999999999999999999874322 1235789999999999
Q ss_pred CCCcEEEecccCCceeecCeEeecC
Q 027096 203 GDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 203 ~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+||.++++||.||+||++|++|+|.
T Consensus 450 ~dG~l~~~GR~dd~ik~~G~~v~p~ 474 (576)
T 3gqw_A 450 LDGYLYVTGRIKDLIIIRGRNIWPQ 474 (576)
T ss_dssp ETTEEEEEEETTTCEEETTEEECHH
T ss_pred ECCEEEEEecCcceEEECCEEECHH
Confidence 7999999999999999999999984
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3e-38 Score=269.04 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=184.0
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHHHhcC-
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKHG- 79 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~- 79 (228)
...++++++|++++++|++|..|+...++.+++.|+++++.+.+ ++..+++.++++++|++.++|+++..+.+..
T Consensus 200 ~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 279 (590)
T 3kxw_A 200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIR 279 (590)
T ss_dssp HHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCC
T ss_pred HHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhh
Confidence 35678999999999999999999987678999999999998764 7899999999999999999999999887753
Q ss_pred --CCCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCC-----------------
Q 027096 80 --LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSF----------------- 135 (228)
Q Consensus 80 --~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~----------------- 135 (228)
......++++|.+++||+++++++.+++.+.|+ +.++++.||+||++.+++.....
T Consensus 280 ~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (590)
T 3kxw_A 280 EEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHR 359 (590)
T ss_dssp GGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSB
T ss_pred hhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCc
Confidence 234467899999999999999999999999873 45799999999999877653211
Q ss_pred --------CCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------cccccC------CC--e
Q 027096 136 --------AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTIDK------KG--W 192 (228)
Q Consensus 136 --------~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~------~~--~ 192 (228)
.......++|+|+++ ++|+|++++++++.|+.|||+|+|+.++..+ ...|.. +| |
T Consensus 360 ~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~ 437 (590)
T 3kxw_A 360 VHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437 (590)
T ss_dssp CCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCB
T ss_pred eeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcE
Confidence 011233578999988 8889977799999999999999999998733 233321 24 9
Q ss_pred EEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 193 VHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 193 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
|+|||+|+++ +|.++++||.||+||++|+||+|.
T Consensus 438 ~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~ 471 (590)
T 3kxw_A 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQ 471 (590)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHH
T ss_pred EecCcEEEEE-CCEEEEEcCccceEEECCEecCHH
Confidence 9999999998 999999999999999999999884
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-36 Score=277.80 Aligned_cols=218 Identities=18% Similarity=0.199 Sum_probs=188.2
Q ss_pred cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (228)
Q Consensus 5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~ 81 (228)
...++++++|++++.+|++|..+... ++.+|+.|+++++.+. .++..+.+.++++++|+++++|++++.+.+..
T Consensus 639 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~-- 715 (1304)
T 2vsq_A 639 VDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-- 715 (1304)
T ss_dssp CCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--
T ss_pred HHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--
Confidence 45678899999999999999988876 8899999999999874 68999999999999999999999999997652
Q ss_pred CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC--CCCCCCCccccCCCceEEEEeCC
Q 027096 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVD 159 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~ 159 (228)
...++++|.+++|||++++++.+++.+.+++.+++|.||+||++.+++...... ......++|+|++++++.|+| +
T Consensus 716 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~ 793 (1304)
T 2vsq_A 716 -EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-E 793 (1304)
T ss_dssp -SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-T
T ss_pred -hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-C
Confidence 223578999999999999999999999887889999999999998776543222 223446899999999999999 8
Q ss_pred CCCCCCCCCceEEEEecCccccc-------ccccc------cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096 160 TQKPLPPNQLGEIWLRGPNMMRA-------TKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226 (228)
Q Consensus 160 ~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p 226 (228)
++++++.|+.|||+|+|+.++.. +.+.| ..++||+|||+|++++||.++++||+||+||++|++|.|
T Consensus 794 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~ 873 (1304)
T 2vsq_A 794 QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL 873 (1304)
T ss_dssp TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCH
Confidence 89999999999999999998873 23333 235699999999999999999999999999999999987
Q ss_pred C
Q 027096 227 N 227 (228)
Q Consensus 227 ~ 227 (228)
.
T Consensus 874 ~ 874 (1304)
T 2vsq_A 874 E 874 (1304)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2e-36 Score=256.43 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=168.3
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCC-HHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 85 (228)
.+.+...+++++.+|++|..++.. ++.++..|+++++.+.+. +..+.+.++++++|+++++|++++.+... ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~ 292 (562)
T 3ite_A 218 SLELGGVGKFLCLASRAFDVHIGE-MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PED 292 (562)
T ss_dssp GGGCTTTCEEECCSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGG
T ss_pred hcccCcCceEEEecCchhhhhHHH-HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccc
Confidence 356788899999999999988876 788999999999876543 56788999999999999999998877433 345
Q ss_pred CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (228)
Q Consensus 86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~ 165 (228)
++++|.+++||+++++++.+++++.+ +.++++.||+||++..+....... .....++|+|+++++++++|++++++++
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~ 370 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVK 370 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCC
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCC
Confidence 78999999999999999999998876 799999999999988766544332 2345689999999999999978889999
Q ss_pred CCCceEEEEecCcccccccc-------cc-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 166 PNQLGEIWLRGPNMMRATKL-------TI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 166 ~g~~Gel~v~~~~~~~~~~~-------~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
.|+.|||+|+|+.++..+.. .+ +.++||+|||+|++|+||.++++||.||+||++|+||+|.
T Consensus 371 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~ 440 (562)
T 3ite_A 371 KGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG 440 (562)
T ss_dssp TTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------
T ss_pred CCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHH
Confidence 99999999999999873322 21 2234999999999999999999999999999999999985
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.8e-36 Score=248.23 Aligned_cols=210 Identities=16% Similarity=0.140 Sum_probs=177.4
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC--
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF-- 84 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-- 84 (228)
.++++++|++++.+|++|..+....++.++..|+++++.+..++..+++.|+++++|+++++|+++..|++.......
T Consensus 124 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 203 (436)
T 3qov_A 124 MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP 203 (436)
T ss_dssp HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT
T ss_pred HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc
Confidence 358899999999999876666666688899999999999888999999999999999999999999999876443333
Q ss_pred CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~ 164 (228)
.++++|.+++||+++++++.+++++.| ++++++.||+||+++.+...... .....+.|.++++++++|+++++++
T Consensus 204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~ 278 (436)
T 3qov_A 204 RETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPV 278 (436)
T ss_dssp TSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred ccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCC
Confidence 378999999999999999999999998 89999999999995442222111 1123566778999999998899999
Q ss_pred CCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCC------c---EEEecccCCceeecCeEeecC
Q 027096 165 PPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDG------Q---LYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 165 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+.|+.|||+|++.. ...+ .++||+|||+++++++| . +++.||.||+||++|++|+|.
T Consensus 279 ~~g~~Gel~v~~~~-----~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~ 344 (436)
T 3qov_A 279 PEGEIGELVLTTLD-----REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPM 344 (436)
T ss_dssp STTCCEEEEEEESS-----CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHH
T ss_pred CCCCceEEEEeccC-----cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHH
Confidence 99999999999843 2334 67899999999999998 4 699999999999999999984
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.8e-35 Score=241.58 Aligned_cols=209 Identities=19% Similarity=0.200 Sum_probs=174.1
Q ss_pred cccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC-
Q 027096 7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF- 84 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~- 84 (228)
.++++++|++++.+|+ +|..++.. ++.++..|+++++.+.++++.+++.|+++++|+++++|+++..|++.......
T Consensus 128 ~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~ 206 (437)
T 2y27_A 128 AAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD 206 (437)
T ss_dssp HTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred HcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC
Confidence 4788999999999998 67777765 78899999999988888999999999999999999999999999875432222
Q ss_pred -CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCc-eeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096 85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162 (228)
Q Consensus 85 -~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~ 162 (228)
.++++|.+++||+++++++.+++++.| ++++++.||+||+++. +....... ....+.|.+++.++++|+++++
T Consensus 207 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~g~ 281 (437)
T 2y27_A 207 PVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVET----KDGPTIWEDHFYPEIIDPETGE 281 (437)
T ss_dssp GGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTTEEEEEECCTTT----CSSCEECTTTEEEEEECTTTCC
T ss_pred cccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhcCCeeEEecCCC----CCceeEccCceEEEEEcCCCCC
Confidence 247899999999999999999999988 7999999999998432 33221111 1124557789999999977899
Q ss_pred CCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC-CCcE-----EEecccCCceeecCeEeecC
Q 027096 163 PLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG-DGQL-----YVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++.|+.|||+|++.. ...+ .++||+|||++++++ +|.+ ++.||.||+||++|++|+|.
T Consensus 282 ~~~~g~~Gel~v~~~t-----~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~ 346 (437)
T 2y27_A 282 VLPDGELGELVFTSLT-----KEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPT 346 (437)
T ss_dssp BCCTTCCEEEEEEESS-----CSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHH
T ss_pred CCCCCCccEEEEecCC-----cCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHH
Confidence 9999999999999832 3344 578999999999998 6985 89999999999999999984
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=6.6e-35 Score=240.54 Aligned_cols=209 Identities=21% Similarity=0.219 Sum_probs=173.8
Q ss_pred cccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC-
Q 027096 7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF- 84 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~- 84 (228)
.++++++|++++.+|+ +|..++.. ++.++..|+++++.+.++++.+++.|+++++|+++++|+++..|++.......
T Consensus 130 ~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~ 208 (443)
T 2y4o_A 130 AAGGRPGDTLHNAFGYGLFTGGLGI-HYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD 208 (443)
T ss_dssp HTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred HcCCCCCCEEEEeccCcccccHHHH-HHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC
Confidence 5788999999999998 56666654 78889999999998888999999999999999999999999999875432222
Q ss_pred -CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCc-eeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096 85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162 (228)
Q Consensus 85 -~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~ 162 (228)
.++++|.+++||+++++++.+++++.| ++++++.||+||+++. +....... ..+ .+.|.++++++++|+++++
T Consensus 209 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~---~~g-~~~~~~~~~~~i~d~~~g~ 283 (443)
T 2y4o_A 209 PAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVET---KDG-PVIWEDHFYPEIIDPVTGE 283 (443)
T ss_dssp GGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTTEEEEEEECTTT---CCS-EEECTTTEEEEEECTTTCC
T ss_pred cccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhcCCeEEeccCCC---CCc-eEEccCCeEEEEEcCCCCC
Confidence 247899999999999999999999988 7999999999997432 32221111 112 4456789999999977899
Q ss_pred CCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC-CcE-----EEecccCCceeecCeEeecC
Q 027096 163 PLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD-GQL-----YVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~p~ 227 (228)
+++.|+.|||+|++.. ...+ .++||+|||+++++++ |.+ ++.||.||+||++|.+|+|.
T Consensus 284 ~~~~G~~Gel~v~~~t-----~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~ 348 (443)
T 2y4o_A 284 VLPDGSQGELVFTSLT-----KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPS 348 (443)
T ss_dssp BCCTTCCEEEEEEESS-----CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHH
T ss_pred CCCCCCceEEEEeCCC-----cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHH
Confidence 9999999999999843 3344 5789999999999999 986 89999999999999999984
No 34
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.4e-35 Score=245.37 Aligned_cols=204 Identities=20% Similarity=0.337 Sum_probs=169.2
Q ss_pred ccccCCC------CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHH
Q 027096 6 QETAGEL------DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 6 ~~~~~~~------~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
+.+++++ +|++++++|++|..|+...++.+|+.|+++++.+.. ++..+++.++++++| +.++|+++..+
T Consensus 217 ~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l 295 (480)
T 3t5a_A 217 SGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFEL 295 (480)
T ss_dssp HHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHH
T ss_pred HHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHH
Confidence 3455565 999999999999999877688999999999998753 899999999999999 78889988888
Q ss_pred Hhc----CCCCCCCCCCceEEEEcccCCCHHHHHHHHHhC-----CCCeEEecccccccCCceeeccCCCC---------
Q 027096 76 AKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-----PSATVIQGYGLTETSGIATMENSFAG--------- 137 (228)
Q Consensus 76 ~~~----~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~-----~~~~l~~~yG~tE~g~~~~~~~~~~~--------- 137 (228)
+.. .......+++||.+++||+++++++.+++++.| +++.+++.||+||++.+++.......
T Consensus 296 ~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~ 375 (480)
T 3t5a_A 296 AARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTE 375 (480)
T ss_dssp HHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHH
T ss_pred HHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHH
Confidence 753 233456789999999999999999999999988 45689999999999987765443211
Q ss_pred --------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCccccc-------cccccc--------
Q 027096 138 --------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLTID-------- 188 (228)
Q Consensus 138 --------------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~-------- 188 (228)
.....++|+|++ ++++|+|.+++++++.|+.|||+|+|+.++.. +.+.|.
T Consensus 376 ~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~ 454 (480)
T 3t5a_A 376 SLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSP 454 (480)
T ss_dssp HHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCT
T ss_pred HhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccC
Confidence 123357999999 99999997778999999999999999999873 233332
Q ss_pred ---CCCeEEcCceEEEcCCCcEEEecc
Q 027096 189 ---KKGWVHTGDLGYFDGDGQLYVVDR 212 (228)
Q Consensus 189 ---~~~~~~TGD~~~~~~~g~~~~~GR 212 (228)
.+|||+|||+|+++ ||.++++||
T Consensus 455 ~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 455 GTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 56799999999996 999999998
No 35
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=9.1e-35 Score=233.34 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=164.4
Q ss_pred ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096 4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (228)
Q Consensus 4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 83 (228)
....++++++|++++++|++|++|+.. ++.+++.|+++++.+.. ...++.++++++|+++++|++++.+++... ..
T Consensus 69 ~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~ 144 (358)
T 4gs5_A 69 TGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TS 144 (358)
T ss_dssp HHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TG
T ss_pred HHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-cc
Confidence 346788999999999999999999987 78889999999887542 123567889999999999999999988754 34
Q ss_pred CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (228)
Q Consensus 84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 163 (228)
..+++||.+++||+++++++.+++++. +.++++.||+||++..+....... ...+.+|.+.|++++.+.+
T Consensus 145 ~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~~~--~~~g~~~~~~pgv~~~~~~------ 214 (358)
T 4gs5_A 145 GQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKALNG--PEASELYVFLPGIQYGVDE------ 214 (358)
T ss_dssp GGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEECSS--TTCCSCEEECTTCEEEECT------
T ss_pred ccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeecccccc--cccceeeccCCCeEEEecC------
Confidence 468899999999999999999999875 789999999999998776654432 3456789999999887643
Q ss_pred CCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096 164 LPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
.|||+++++.. .+|||+|||+|++|++| +.++||.||+||++|+||+|+
T Consensus 215 -----~Gel~~~g~~~---------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~ 263 (358)
T 4gs5_A 215 -----RGCLHISGAVT---------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLD 263 (358)
T ss_dssp -----TSEEEEESGGG---------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHH
T ss_pred -----cCceEEecccc---------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHH
Confidence 48999998643 67899999999999988 777899999999999999984
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2e-28 Score=197.36 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=154.8
Q ss_pred ccccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHH-----------------------HHHHHHHhcC
Q 027096 6 QETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHR 61 (228)
Q Consensus 6 ~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~-----------------------~~~~~i~~~~ 61 (228)
..++++++|++++.+|+ +|..++.. .+.++..|+ +++...+++. .+++.+++++
T Consensus 128 ~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 205 (369)
T 3hgu_A 128 QHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD 205 (369)
T ss_dssp TTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 45678899999999999 99999887 566699999 5666667777 8888999999
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCCCCceEEEEcccCCCHHHHHHHH-HhCCCCeEEecccccccCCceeeccCCCCCCC
Q 027096 62 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAGSRN 140 (228)
Q Consensus 62 ~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~-~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~ 140 (228)
+|++.++|+++..|++........++++|.+++||+++++++++++. +.||++++++.||+||+++++..++.
T Consensus 206 ~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------ 279 (369)
T 3hgu_A 206 IRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------ 279 (369)
T ss_dssp EEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------
T ss_pred CCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc------
Confidence 99999999999999876443334567899999999999999999999 89989999999999999876643321
Q ss_pred CCCcccc------CCCceEEEEeCCCCCCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC--C-------
Q 027096 141 IGSAGAL------APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD--G------- 205 (228)
Q Consensus 141 ~~~~g~p------~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g------- 205 (228)
.++|+| .++++++|+|++++++++.|+.|||+|++... ..+ --.|+|||++++.+. |
T Consensus 280 -~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~-----~~~--l~ry~tgD~~~~~~~~~g~~~d~~~ 351 (369)
T 3hgu_A 280 -TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSP-----WAF--YPRVAERDTAIRLPGVSGFAGDRLA 351 (369)
T ss_dssp -CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEET-----TEE--EEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred -ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCc-----ccc--cccccCCceEEEecCCCCCcCcccc
Confidence 147788 99999999997699999999999999987432 111 125999999998543 3
Q ss_pred cEEEecccCCceeecCe
Q 027096 206 QLYVVDRIKELIKYKGF 222 (228)
Q Consensus 206 ~~~~~GR~~d~i~~~G~ 222 (228)
.+..++|.|+..++.|.
T Consensus 352 ~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 352 DIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEECC-----------
T ss_pred cceeccccCCCceeeec
Confidence 25667788888877763
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.52 E-value=1.9e-07 Score=78.37 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCC---ceEEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCCcc-ccCCC-ceEEEEeCC
Q 027096 86 LSS---LKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAG-ALAPG-VEALIVSVD 159 (228)
Q Consensus 86 ~~~---lr~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g-~p~~~-~~~~i~d~~ 159 (228)
.++ +..++.||- ..-.+++++.+++.++. ..|++||+ .+.....+.. .+...+ ..+++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC---KPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS---CGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC---CcccCceeecCCcEEEEEEecc
Confidence 466 444444552 44445566666678877 99999995 3333222110 001111 11222 344555422
Q ss_pred C---C-----CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeecCeEeecC
Q 027096 160 T---Q-----KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGFQVTSN 227 (228)
Q Consensus 160 ~---~-----~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~p~ 227 (228)
+ . ..++.|+.+||+|++..- ---|++||++++.. ...+.+.||.++++++.|++|+++
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~G----------L~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~ 438 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFAG----------LYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEE 438 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSSS----------CCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHH
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeeccc----------eeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHH
Confidence 2 1 356789999999987431 11399999999864 367999999999999999999874
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.46 E-value=2e-07 Score=78.40 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=76.5
Q ss_pred CCCce---EEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCCc-cccCCC-ceEEEEeCC
Q 027096 86 LSSLK---LVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSA-GALAPG-VEALIVSVD 159 (228)
Q Consensus 86 ~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~~-g~p~~~-~~~~i~d~~ 159 (228)
.+++| .++.|| + ..-.++++..+++.++. ..|++||. .+.....+.. .+... ...+++ .-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMS---KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTS---CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCC---CcccCceeecCCcEEEEEEecc
Confidence 46655 344444 2 33345565655677777 99999995 3333322110 00111 112222 334444322
Q ss_pred CC---------------CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeec
Q 027096 160 TQ---------------KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYK 220 (228)
Q Consensus 160 ~~---------------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~ 220 (228)
+. ..++.|+.+||+|+...-. --|++||++++.. ...+.+.||.+++|++.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~GL----------~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~ 443 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGL----------YRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSID 443 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTSC----------CSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSS
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhhhh----------hheecCCEEEEeecCCCCcEEEEEEecCCeEEcc
Confidence 21 3577899999999764311 1399999999863 46899999999999999
Q ss_pred CeEeecC
Q 027096 221 GFQVTSN 227 (228)
Q Consensus 221 G~~v~p~ 227 (228)
|++|+++
T Consensus 444 Geki~~~ 450 (609)
T 4b2g_A 444 SDKTDEA 450 (609)
T ss_dssp SCCBCHH
T ss_pred ccCCCHH
Confidence 9999874
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.33 E-value=1.1e-06 Score=73.75 Aligned_cols=126 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred CCCceE--EEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCC-ccccCCC-ceEEEEeCCC
Q 027096 86 LSSLKL--VGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGS-AGALAPG-VEALIVSVDT 160 (228)
Q Consensus 86 ~~~lr~--~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~-~g~p~~~-~~~~i~d~~~ 160 (228)
.++++. ++.+|. + ..-.+++++.+++.++. ..|++||. .+.....+.. .++. ....+++ .-.+.++.++
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL---SPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS---CTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC---CccccceeecCCcEEEEEEeccc
Confidence 567753 334442 3 33345566666677777 99999995 3333322211 1111 1112222 2333333221
Q ss_pred -C---------CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeecCeEeec
Q 027096 161 -Q---------KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGFQVTS 226 (228)
Q Consensus 161 -~---------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~p 226 (228)
+ ..++.|+.+||+|++... ---|++||++++.. ...+.+.||.++++++.|+++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~G----------L~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~ 444 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYAG----------LYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE 444 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTTS----------CSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeeccc----------eeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence 1 367889999999987431 11399999999853 25799999999999999999986
Q ss_pred C
Q 027096 227 N 227 (228)
Q Consensus 227 ~ 227 (228)
+
T Consensus 445 ~ 445 (581)
T 4epl_A 445 R 445 (581)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=82.03 E-value=6.6 Score=32.65 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=53.9
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
.++.++|+|...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..+.....+
T Consensus 72 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 72 KGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 588999999999987654 3444789999999999986 47889999999999999998887655544
No 41
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=81.52 E-value=6.9 Score=32.50 Aligned_cols=67 Identities=4% Similarity=-0.095 Sum_probs=54.1
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
..++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..++..+.....+
T Consensus 66 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 66 ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred HcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 3688999999999987654 3344789999999999986 46889999999999999999887765443
No 42
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=80.75 E-value=4.8 Score=33.74 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=53.0
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
+++.++|+|...+|-+.. +...+++++..|+.++..+ ....+.+...+++.++..+++.+.....+
T Consensus 94 ~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 94 CGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred cCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 488999999999987654 3344789999999999986 46888999999999999988877655444
No 43
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=80.16 E-value=6.6 Score=32.42 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=52.5
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~ 74 (228)
..++.++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..+.....
T Consensus 67 ~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 67 TLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp HTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 3578999999999987654 3344788999999999886 4788899999999999988887665443
No 44
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=79.77 E-value=5.8 Score=32.99 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=54.1
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...++..++..+++.......+
T Consensus 70 ~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 70 YGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp HTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred hCCCCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 588999999999986654 4444789999999999885 57889999999999999999887765544
No 45
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=79.42 E-value=6.9 Score=32.44 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=52.9
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~ 74 (228)
.++.++|++...+|-+.. +...+++++..|+.++..+ ....+.+...+++.++..++..+.....
T Consensus 69 ~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 69 IGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred cCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 688999999999987654 3444789999999999886 4788999999999999999887755443
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.44 E-value=8.4 Score=31.62 Aligned_cols=65 Identities=2% Similarity=-0.103 Sum_probs=53.7
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~ 74 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..++..+.....
T Consensus 51 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 51 DGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred cCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 588999999999987654 4444789999999999986 4788999999999999999988776554
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=77.38 E-value=10 Score=31.25 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=51.4
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~ 72 (228)
.++.++|++...+|-+.. +...+++++..|+..+..+ ....+.+...+++.++..+...+...
T Consensus 63 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 63 LGIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred cCCCCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH
Confidence 588999999999997654 4444789999999999986 46888999999999999888766543
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.09 E-value=6.3 Score=32.81 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=52.4
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~ 74 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+++...+++.++..+++.+.....
T Consensus 72 ~Gv~~gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 137 (548)
T 2d1s_A 72 YGLVVDGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137 (548)
T ss_dssp HTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHH
T ss_pred cCCCCCCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHH
Confidence 588999999999986654 3344788999999999886 4688999999999999999887765443
No 49
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=75.74 E-value=20 Score=25.88 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=54.9
Q ss_pred cEEEEecch--hhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEe--c----hHH--HHHHHhcCCCC
Q 027096 14 YVFLCVLPL--FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV--V----PPL--ILALAKHGLVK 82 (228)
Q Consensus 14 d~~~~~~p~--~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~--~----p~~--~~~l~~~~~~~ 82 (228)
.+++..++- .|..|....-..--.+|-.++... ...++.+.+.+.+++++.+.+ + ++. +..+.+..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 344444443 677788775555556777776654 468999999999999997666 2 221 22222221111
Q ss_pred CCCCCCceEEEEcccCCCHHHHHH
Q 027096 83 KFDLSSLKLVGSGAAPLGKELMEE 106 (228)
Q Consensus 83 ~~~~~~lr~~~~~G~~l~~~~~~~ 106 (228)
.. ...+ .+++||.+++++..++
T Consensus 173 ~~-~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 KL-RDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TC-GGGS-EEEEESSSCCHHHHHH
T ss_pred CC-CCCC-EEEEECCCCCHHHHHH
Confidence 10 0123 4788999999876554
No 50
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=74.94 E-value=13 Score=31.08 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=52.9
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~ 74 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..++..+.....
T Consensus 84 ~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 84 KGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 588999999999987654 3444789999999999986 4688899999999999999988765443
No 51
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=74.49 E-value=11 Score=30.99 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=51.3
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~ 71 (228)
.++.++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..+.+.+..
T Consensus 48 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~ 110 (503)
T 4fuq_A 48 RGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSK 110 (503)
T ss_dssp TTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGG
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchh
Confidence 588999999999987654 3444789999999999986 4788999999999999999887643
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.87 E-value=13 Score=30.51 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=50.9
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEe--chHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV--VPPLILAL 75 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~--~p~~~~~l 75 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..++. .+.....+
T Consensus 49 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 49 DGLRPQQRVAVVAPNSAD--VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TTCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 578999999999987654 3444789999999999886 468889999999999998887 55444433
No 53
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=72.76 E-value=10 Score=31.88 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=50.5
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
..++.++|+|...+|-+.. +...+++++..|+.++..+ ....+.+...+++.++..+.+.+
T Consensus 105 ~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 105 KHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp HTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 3588999999999987665 4444789999999999885 47889999999999999888754
No 54
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=72.53 E-value=12 Score=32.11 Aligned_cols=62 Identities=6% Similarity=0.010 Sum_probs=51.2
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~ 70 (228)
..++.++|+|...+|.+.. +...+++++..|+..+.++ .+..+.+...+++.++..+++...
T Consensus 133 ~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 133 SMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred hcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5688999999999997765 3344789999999999885 578999999999999998887543
No 55
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=68.87 E-value=17 Score=30.29 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=50.5
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~ 70 (228)
.++.++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..+.....
T Consensus 120 ~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 120 LGVAPGTLVGVHLERGFD--MVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecch
Confidence 588999999999987665 3344789999999999986 468899999999999998887654
No 56
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=68.31 E-value=14 Score=31.53 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=49.3
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++.++|+|...+|-+.. +...+++++..|+..+..+ .+.++.+...+++.++..+++..
T Consensus 127 ~Gv~~Gd~V~i~~~~~~e--~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 127 LGIKKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp HTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 588999999999997765 3344788999999998885 57899999999999988887643
No 57
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=65.63 E-value=15 Score=30.11 Aligned_cols=60 Identities=15% Similarity=-0.004 Sum_probs=48.7
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++.++|++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..++...
T Consensus 49 ~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 49 LALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESS
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecC
Confidence 578899999988886654 3444789999999999885 57889999999999999887654
No 58
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=64.90 E-value=18 Score=29.90 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=49.1
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++.++|++...+|-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..+
T Consensus 75 ~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 75 KGLGKGDTALVQLPNVAE--FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 588999999999986654 3344789999999999875 57888999999999999888765
No 59
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=64.83 E-value=18 Score=29.88 Aligned_cols=60 Identities=7% Similarity=-0.031 Sum_probs=49.0
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++.++|++...+|-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..+
T Consensus 70 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 70 LGIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp HTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred cCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecc
Confidence 578999999999986654 3444789999999988875 57888999999999999888754
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=63.82 E-value=27 Score=29.06 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=52.6
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALA 76 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 76 (228)
.++.++|+|...++-+.. +...+++++..|+..+..+.. ..+.+...++..++..+...+.....+.
T Consensus 60 ~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 60 EGAKPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCCCCEEEEEcCCchh--HHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 588999999999987655 444478999999999988653 3467788889999999998887766553
No 61
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=62.07 E-value=35 Score=28.23 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=51.5
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CC-------HHHHHHHHHhcCceEEEechHHHHHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FD-------LEMFLRAIEKHRVTHIWVVPPLILAL 75 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l 75 (228)
.++.++|++...+|-+.. +...+++++..|+..+..+. .. .+.+...++..++..+.........+
T Consensus 69 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 69 LNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp TCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred cCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHH
Confidence 578999999999997664 44447899999999998853 33 57788888999999998877655443
No 62
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=55.94 E-value=30 Score=31.11 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=51.6
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~ 71 (228)
.++.++|+|...+|-+.. +...+++++..|+.++..+ ...++.+...+++.++..++..+..
T Consensus 108 ~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp TTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred cCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 588999999999997654 4445789999999999886 5788999999999999999887654
No 63
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=54.34 E-value=34 Score=27.94 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=47.3
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~ 68 (228)
.++.++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..
T Consensus 46 ~g~~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 46 EYPDDRSPIMVYGHMQPE--MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp HSTTCCCCEEEEESSCHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEES
T ss_pred hCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEec
Confidence 478899999888886554 3344789999999998885 5788999999999998888754
No 64
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=53.84 E-value=26 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=46.4
Q ss_pred cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 027096 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (228)
Q Consensus 7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~ 68 (228)
..+..++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..++..
T Consensus 46 ~~~~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 46 RISGEKKSPILVYGHMEPH--MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp TSCSSSCCCEEEEESSCHH--HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEES
T ss_pred hcCCCCCCeEEEEecCCHH--HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEec
Confidence 3566778988887775543 3344788899999998885 5789999999999999988863
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=53.49 E-value=34 Score=27.57 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=51.2
Q ss_pred cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 027096 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (228)
Q Consensus 9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 77 (228)
+. ++|+|...++-+.. +...+++++..|+.++..+. ...+.+...+++.++..++..+.....+.+
T Consensus 79 g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 79 GS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp SC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 44 89999988887654 34447899999999998853 456788889999999999988876665543
No 66
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=52.53 E-value=54 Score=26.61 Aligned_cols=56 Identities=5% Similarity=-0.054 Sum_probs=46.1
Q ss_pred CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
++|++...+|-+.. +...+++++..|+..+..+ ....+.+...+++.++..+++..
T Consensus 47 ~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 47 QQSRVGLYIDNSIQ--SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp CCSEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred CCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 88999999987654 3444789999999999986 47899999999999999888654
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=51.69 E-value=43 Score=28.19 Aligned_cols=60 Identities=10% Similarity=-0.064 Sum_probs=48.3
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++.++|+|...++-+.. +...+++.+..|+..+..+ ....+.+...+++.++..+....
T Consensus 70 ~Gv~~gd~V~l~~~~s~~--~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 70 QGIKPGETALVQLGNVAE--LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp TTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred cCCCCCCEEEEECCCcHH--HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecc
Confidence 488999999999986654 4444789999999988775 46788888999999988887754
No 68
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=47.59 E-value=69 Score=27.09 Aligned_cols=59 Identities=5% Similarity=-0.169 Sum_probs=47.6
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEec
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVV 68 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~ 68 (228)
.++.++|+|...++-+.. +...+++.+..|+.++..+. ...+.+...+++.++..+...
T Consensus 72 ~Gv~~g~~V~i~~~~s~~--~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 72 HYPQPGVCLGVYGEYSRE--SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp HCCSSCCEEEEESSSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEec
Confidence 478999999999986654 44447899999999999864 677888888999898887744
No 69
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=46.06 E-value=76 Score=26.22 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=46.8
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p 69 (228)
.++ ++|++...++-+.. +...+++++..|+..+..+ ....+.+...+++.++..++...
T Consensus 75 ~g~-~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 75 ASL-HGRAIAVSLDRSLI--AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp TTC-SSCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred cCC-CCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 356 69999999987665 3344789999999999886 47888999999999988877653
No 70
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=36.66 E-value=95 Score=25.89 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=31.2
Q ss_pred CcEEEEecchhhH-HhHHHHHHHHhhcCcEEEEcCC-CC---HHHHHHHHHh
Q 027096 13 DYVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMAK-FD---LEMFLRAIEK 59 (228)
Q Consensus 13 ~d~~~~~~p~~~~-~g~~~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~ 59 (228)
--+++...|+.+- .-....+..+|..|.++++-+. .+ ...+.+++.+
T Consensus 173 ~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e 224 (538)
T 3qan_A 173 MGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLED 224 (538)
T ss_dssp CCEEEEECCSTTTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHH
Confidence 3578888898663 2233347799999999999764 33 3445566655
No 71
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=35.91 E-value=97 Score=25.62 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=45.0
Q ss_pred CCcEEEEecchhhHH-hHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCC
Q 027096 12 LDYVFLCVLPLFHVF-GLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~-g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~ 80 (228)
|--+++...|+.+-. -....+..+|..|.++++-+.. +...+.+++++. ....+..++ ..-..|++++
T Consensus 173 P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~~~~~~L~~~~- 251 (516)
T 1uzb_A 173 PLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHP- 251 (516)
T ss_dssp ECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHTCCTTSEEECCCSSSHHHHHHHTCT-
T ss_pred ccceEEEECCCccHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHhCCCcCeEEEEeCCCchhhhhhhcCC-
Confidence 334788888986542 2223477999999999997642 344566666653 333444333 2445555542
Q ss_pred CCCCCCCCceEEEEcc
Q 027096 81 VKKFDLSSLKLVGSGA 96 (228)
Q Consensus 81 ~~~~~~~~lr~~~~~G 96 (228)
.++.+.+.|
T Consensus 252 -------~v~~I~FTG 260 (516)
T 1uzb_A 252 -------RIRFINFTG 260 (516)
T ss_dssp -------TCCEEEEES
T ss_pred -------CcCEEEecC
Confidence 355555544
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=35.90 E-value=78 Score=25.80 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=44.0
Q ss_pred CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 027096 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (228)
Q Consensus 10 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~ 70 (228)
+..++++...++-+.. +...+++++..|+.++..+ ....+.+...+++.++..+...+.
T Consensus 65 L~~~~~V~i~~~~~~~--~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 124 (505)
T 3nyq_A 65 IGGAGRVAVWATPAME--TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD 124 (505)
T ss_dssp CC---CEEEECCSSHH--HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTT
T ss_pred ccCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCc
Confidence 4457888888876554 3344789999999999885 578889999999999999887653
No 73
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=35.18 E-value=96 Score=28.32 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=41.8
Q ss_pred CCcEEEEecchhhH-HhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhc--CceEEEechH----HHHHHHhc
Q 027096 12 LDYVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVPP----LILALAKH 78 (228)
Q Consensus 12 ~~d~~~~~~p~~~~-~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~l~~~p~----~~~~l~~~ 78 (228)
|--++.+.+|+.+- .-....+..+|..|.++++-+.. ....+.+++.+. ....+.++|. .-..|+.+
T Consensus 666 PlGVV~~I~PwNfPl~i~~~~~a~ALaaGNtVVlKPse~tplsa~~l~ell~eAGlP~gvvnvV~G~g~~vg~~L~~h 743 (1026)
T 4f9i_A 666 PKGVAAVIAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDH 743 (1026)
T ss_dssp ECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHHC
T ss_pred cCceEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEcCccchHHHHHHHHHHHHhCcCCCeEEEEecCcHHHHHHHHhC
Confidence 44688899998762 22333477999999999997642 344566666663 3444544432 34556554
No 74
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=33.86 E-value=1.1e+02 Score=28.54 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=49.6
Q ss_pred ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechH
Q 027096 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPP 70 (228)
Q Consensus 8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~ 70 (228)
.++.++++|...++-+.. +...+++.+..|+.++..+. ...+.+...+++.++..+...+.
T Consensus 509 ~Gv~~g~~V~i~~~~s~~--~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~ 570 (1304)
T 2vsq_A 509 HGAGKGSVVALYTKRSLE--LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570 (1304)
T ss_dssp TTCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECST
T ss_pred cCcCCcCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcc
Confidence 578899999999986654 44457899999999999864 67788888999999988887654
No 75
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=32.97 E-value=1.3e+02 Score=24.88 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=40.3
Q ss_pred CcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhc
Q 027096 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKH 78 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~ 78 (228)
--++....|+.+-..+. ..+..+|..|.++++-+. . +...+.+++++. ....+..++ ..-..|.++
T Consensus 179 ~GVV~~I~PwN~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~g~~~g~~L~~~ 255 (517)
T 2o2p_A 179 VGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDH 255 (517)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHTTCCTTSEEECCSCHHHHHHHHHHC
T ss_pred CccEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCcCeEEEEeCCCHHHHHHHHhC
Confidence 34788888976543332 236789999999999764 2 345567777664 333444333 244556555
No 76
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=32.17 E-value=1.1e+02 Score=25.14 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHh-cCceEEEechH----HHHHHHhcCCC
Q 027096 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK-HRVTHIWVVPP----LILALAKHGLV 81 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~-~~~t~l~~~p~----~~~~l~~~~~~ 81 (228)
|--++....|+.+-..+ ...+..+|..|.++++-+. . +...+.+++++ .....+..++. .-..|+++
T Consensus 159 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ealP~gvv~vv~g~~~~~g~~L~~~--- 235 (495)
T 1wnd_A 159 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGH--- 235 (495)
T ss_dssp ECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHTTTSCTTSEEECCCCTTTTHHHHHTC---
T ss_pred cCCeEEEECCCcchHHHHHHHHHHHHHcCCeeEeeCCCCChHHHHHHHHHHHHhCCcCeEEEEeCCCHHHHHHHHhC---
Confidence 34578888998754322 2347799999999999764 2 34456666665 33333333322 33444433
Q ss_pred CCCCCCCceEEEEccc
Q 027096 82 KKFDLSSLKLVGSGAA 97 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~ 97 (228)
+.++.+.+.|.
T Consensus 236 -----p~vd~I~FTGS 246 (495)
T 1wnd_A 236 -----PKVRMVSLTGS 246 (495)
T ss_dssp -----TTEEEEEEESC
T ss_pred -----CCcCEEEEECc
Confidence 34666665553
No 77
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=31.26 E-value=1.3e+02 Score=24.76 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=50.3
Q ss_pred CcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhc--CceEEEech---HHHHHHHhcCCCC
Q 027096 13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH--RVTHIWVVP---PLILALAKHGLVK 82 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~--~~t~l~~~p---~~~~~l~~~~~~~ 82 (228)
--+++...|+.+-..+ ...+..+|..|.++++-+. .+...+.+++++. ....+..++ ..-..|..+
T Consensus 158 ~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~g~~L~~~---- 233 (501)
T 1uxt_A 158 LGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEKIVAD---- 233 (501)
T ss_dssp CSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC----
T ss_pred ccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHhC----
Confidence 3578888888664332 2347799999999999764 2345567777664 334444443 234455544
Q ss_pred CCCCCCceEEEEcccCCCHHHHHHHHH
Q 027096 83 KFDLSSLKLVGSGAAPLGKELMEECAK 109 (228)
Q Consensus 83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~ 109 (228)
+.++.+.+.|. .++.+.+.+
T Consensus 234 ----~~vd~I~FTGS---~~~G~~i~~ 253 (501)
T 1uxt_A 234 ----DRVAAVSFTGS---TEVGERVVK 253 (501)
T ss_dssp ----TTCCEEEEESC---HHHHHHHHH
T ss_pred ----CCcCEEEEeCc---HHHHHHHHH
Confidence 23556665553 344444444
No 78
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=30.38 E-value=1.7e+02 Score=23.92 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=45.7
Q ss_pred CcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCCC
Q 027096 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLV 81 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~~ 81 (228)
--+++..+|+.+-..+. ..+..+|..|.++++-+.. +...+.+++++. ....+..++ ..-..|.++
T Consensus 143 ~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~--- 219 (479)
T 2imp_A 143 LGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGN--- 219 (479)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHC---
T ss_pred cceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHhCCCcCeEEEEECCcHHHHHHHHhC---
Confidence 35778888876554433 2467899999999997642 345566666664 333444332 234555554
Q ss_pred CCCCCCCceEEEEccc
Q 027096 82 KKFDLSSLKLVGSGAA 97 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~ 97 (228)
+.++.+.+.|.
T Consensus 220 -----~~v~~V~fTGS 230 (479)
T 2imp_A 220 -----PKVAMVSMTGS 230 (479)
T ss_dssp -----TTEEEEEEESC
T ss_pred -----CCcCEEEEeCC
Confidence 23666655553
No 79
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=29.56 E-value=1.5e+02 Score=24.32 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCC
Q 027096 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~ 80 (228)
|--++....|+.+-..+ ...+..+|..|.++++-+. . +...+.+++.+. ....+..++ ..-..|.++
T Consensus 158 P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~-- 235 (500)
T 1o04_A 158 PVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASH-- 235 (500)
T ss_dssp ECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCTTTHHHHHHTC--
T ss_pred cCCcEEEECCCCchHHHHHHHHHHHHHcCCEEEEECCccChHHHHHHHHHHHHhCCCcCeEEEEecCcHHHHHHHHhC--
Confidence 33578889998754322 2247799999999999764 2 344566666664 333444332 244555544
Q ss_pred CCCCCCCCceEEEEcc
Q 027096 81 VKKFDLSSLKLVGSGA 96 (228)
Q Consensus 81 ~~~~~~~~lr~~~~~G 96 (228)
+.++.+.+.|
T Consensus 236 ------p~v~~I~FTG 245 (500)
T 1o04_A 236 ------EDVDKVAFTG 245 (500)
T ss_dssp ------TTCCEEEEES
T ss_pred ------CCcCEEEEEC
Confidence 2355665544
No 80
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=29.04 E-value=1.5e+02 Score=24.34 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=36.6
Q ss_pred CcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech
Q 027096 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP 69 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p 69 (228)
--+++..+|+.+-..+. ..+..+|..|.++++-+. . +...+.+++.+. ....+..++
T Consensus 147 ~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~ 210 (487)
T 2w8n_A 147 IGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIP 210 (487)
T ss_dssp CCEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECC
T ss_pred ceEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 35788888885533222 246789999999999764 2 345566777664 444555554
No 81
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=28.74 E-value=1.6e+02 Score=24.16 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=45.4
Q ss_pred CCcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCC
Q 027096 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~ 80 (228)
|--++....|+.+-..+ ...+..+|..|.++++-+. . +...+.+++.+. ....+..++ ..-..|.+++
T Consensus 159 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~~- 237 (501)
T 1bxs_A 159 PVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHM- 237 (501)
T ss_dssp ECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHTCT-
T ss_pred CCceEEEECCCcchHHHHHHHHHHHHHcCCeeeccCCCccHHHHHHHHHHHHHhCCCcceEEEEecCchHHHHHHHhCC-
Confidence 33478888998754322 2347799999999999764 2 344566666664 333444433 2445555442
Q ss_pred CCCCCCCCceEEEEcc
Q 027096 81 VKKFDLSSLKLVGSGA 96 (228)
Q Consensus 81 ~~~~~~~~lr~~~~~G 96 (228)
.++.+.+.|
T Consensus 238 -------~v~~I~FTG 246 (501)
T 1bxs_A 238 -------DVDKVAFTG 246 (501)
T ss_dssp -------TCSEEEEES
T ss_pred -------CcCEEEEEC
Confidence 355555544
No 82
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=28.42 E-value=1.8e+02 Score=24.40 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=48.0
Q ss_pred cEEEEecchhhHHhHHHH-HHHHhhcCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCCCC
Q 027096 14 YVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (228)
Q Consensus 14 d~~~~~~p~~~~~g~~~~-~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~~~ 82 (228)
-++...+|+.+-...... +..+| .|.++++-+.. +...+.+++++. ....+..+| ..-..|..+
T Consensus 202 GVV~~I~PwNfP~~~~~~~~apAL-aGNtVVlKPs~~tp~sa~~l~~ll~eAGlP~Gvvnvv~g~g~~~g~~L~~h---- 276 (563)
T 4e3x_A 202 GFVAAISPFNFTAIGGNLAGAPAL-MGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSS---- 276 (563)
T ss_dssp SEEEEECCSSCHHHHHHHHHHHHH-TTCCEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTTC----
T ss_pred eEEEEECCchHHHHHHHHHHHHhh-cCCEEEEECCCCChHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHhC----
Confidence 688899998776543332 33455 69999997642 344566667664 444555544 233445443
Q ss_pred CCCCCCceEEEEcccC-CCHHHHHHHHH
Q 027096 83 KFDLSSLKLVGSGAAP-LGKELMEECAK 109 (228)
Q Consensus 83 ~~~~~~lr~~~~~G~~-l~~~~~~~~~~ 109 (228)
+.++.+.+.|.. .-..+.+...+
T Consensus 277 ----p~v~~I~FTGSt~vG~~i~~~aa~ 300 (563)
T 4e3x_A 277 ----EHLCGINFTGSVPTFKHLWRQVAQ 300 (563)
T ss_dssp ----TTEEEEEEESCHHHHHHHHHHHHH
T ss_pred ----CCcCEEEEECCHHHHHHHHHHHHh
Confidence 346566555542 33334444333
No 83
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=27.72 E-value=1.8e+02 Score=23.72 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=40.3
Q ss_pred CcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhc
Q 027096 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKH 78 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~ 78 (228)
--+++..+|+.+-..+. ..+..+|..|.++++-+. . +...+.+++.+. ....+..++ ..-..|..+
T Consensus 143 ~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~ 219 (490)
T 2ve5_A 143 LGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEH 219 (490)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHC
T ss_pred ccEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCChHHHHHHHhC
Confidence 35778888886654443 336789999999999764 2 344566666654 333344333 344555554
No 84
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=26.99 E-value=2.1e+02 Score=23.49 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=45.7
Q ss_pred CCcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhcCC
Q 027096 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~ 80 (228)
|--++....|+.+-..+. ..+..+|..|.++++-+. . +...+.+++.+. ....+..++ ..-..|+.+
T Consensus 148 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~g~~L~~~-- 225 (497)
T 3k2w_A 148 PRGVVVGITAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGSVVGQTLCES-- 225 (497)
T ss_dssp ECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCSCTTTHHHHHHHC--
T ss_pred CCceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCchHHHHHHHhC--
Confidence 335788888876653332 346789999999999764 2 344566666654 333444433 244555554
Q ss_pred CCCCCCCCceEEEEccc
Q 027096 81 VKKFDLSSLKLVGSGAA 97 (228)
Q Consensus 81 ~~~~~~~~lr~~~~~G~ 97 (228)
+.++.+.+.|.
T Consensus 226 ------p~vd~I~fTGS 236 (497)
T 3k2w_A 226 ------PITKMITMTGS 236 (497)
T ss_dssp ------SSEEEEEEESC
T ss_pred ------CCcCEEEEECc
Confidence 23555555553
No 85
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=26.96 E-value=2.1e+02 Score=23.34 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=46.2
Q ss_pred CCcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhc--CceEEEec---hHHHHHHHhcCCC
Q 027096 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVV---PPLILALAKHGLV 81 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~l~~~---p~~~~~l~~~~~~ 81 (228)
|--+++..+|+.+-..+ ...+..+|..|.++++-+.. +...+.+++++. ....+..+ ...-..|++++
T Consensus 141 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~-- 218 (486)
T 1t90_A 141 PIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHP-- 218 (486)
T ss_dssp ECSEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT--
T ss_pred ccCEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhCC--
Confidence 34578888888653222 23467999999999997642 345567777664 33333333 33445555542
Q ss_pred CCCCCCCceEEEEccc
Q 027096 82 KKFDLSSLKLVGSGAA 97 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~ 97 (228)
.++.+.+.|.
T Consensus 219 ------~v~~I~fTGS 228 (486)
T 1t90_A 219 ------EIKAISFVGS 228 (486)
T ss_dssp ------TEEEEEEESC
T ss_pred ------CCCEEEEeCC
Confidence 3556555553
No 86
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=26.89 E-value=2.4e+02 Score=22.73 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=38.4
Q ss_pred cEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCCC-C---HHHHHHHHH----h--cCceEEEech----HHHHHHHhc
Q 027096 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF-D---LEMFLRAIE----K--HRVTHIWVVP----PLILALAKH 78 (228)
Q Consensus 14 d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~~-~---~~~~~~~i~----~--~~~t~l~~~p----~~~~~l~~~ 78 (228)
-++....|+.+-.... ..+..+|..|.++++-+.. . ...+.+++. + ....++..++ ..-..|+++
T Consensus 105 GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~ 184 (452)
T 3my7_A 105 GIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKH 184 (452)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhC
Confidence 5777888875544332 3367899999999997642 2 233344443 2 3444444433 455667665
Q ss_pred C
Q 027096 79 G 79 (228)
Q Consensus 79 ~ 79 (228)
+
T Consensus 185 p 185 (452)
T 3my7_A 185 D 185 (452)
T ss_dssp T
T ss_pred C
Confidence 3
No 87
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=26.26 E-value=2.5e+02 Score=23.05 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=46.8
Q ss_pred CCcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhc--CceEEEech---HHHHHHHhcCCC
Q 027096 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH--RVTHIWVVP---PLILALAKHGLV 81 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~--~~t~l~~~p---~~~~~l~~~~~~ 81 (228)
|--++....|+.+-..+. ..+..+|..|.++++-+. .+...+.+++++. ....+..++ ..-..|..++
T Consensus 155 P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~~aGlP~gvv~vv~g~~~~g~~L~~~p-- 232 (503)
T 1a4s_A 155 PLGVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHP-- 232 (503)
T ss_dssp ECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT--
T ss_pred cCceEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCcCeEEEEecCchHHHHHHhCC--
Confidence 335788888886643332 236799999999999764 2345567777764 334444443 2345555553
Q ss_pred CCCCCCCceEEEEccc
Q 027096 82 KKFDLSSLKLVGSGAA 97 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~ 97 (228)
.++.+.+.|.
T Consensus 233 ------~v~~V~FTGS 242 (503)
T 1a4s_A 233 ------NVAKVSFTGS 242 (503)
T ss_dssp ------TCCEEEEESC
T ss_pred ------CcCEEEEeCC
Confidence 3556655553
No 88
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.19 E-value=2e+02 Score=21.17 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred cEEEEecch--hhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEech------HHHHHHHhcCCCCCC
Q 027096 14 YVFLCVLPL--FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP------PLILALAKHGLVKKF 84 (228)
Q Consensus 14 d~~~~~~p~--~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~~ 84 (228)
.+++..++- .|..|....-..--.+|-.++.. ....++.+.+.+.+++++.+.++- ..+..+.+..+...
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~- 202 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENG- 202 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTT-
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcC-
Confidence 344544443 67777776444444677777654 356889999999999988776432 12333333221111
Q ss_pred CCCCceEEEEcccCCCHHHH
Q 027096 85 DLSSLKLVGSGAAPLGKELM 104 (228)
Q Consensus 85 ~~~~lr~~~~~G~~l~~~~~ 104 (228)
..+ .+++||..++++..
T Consensus 203 --~~~-~v~vGG~~~~~~~~ 219 (258)
T 2i2x_B 203 --IKI-PFACGGGAVNQDFV 219 (258)
T ss_dssp --CCC-CEEEESTTCCHHHH
T ss_pred --CCC-cEEEECccCCHHHH
Confidence 123 47778888886543
No 89
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=25.60 E-value=80 Score=19.73 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=20.7
Q ss_pred CCCeEEcCceEE-EcCCC-cEEEecccCC
Q 027096 189 KKGWVHTGDLGY-FDGDG-QLYVVDRIKE 215 (228)
Q Consensus 189 ~~~~~~TGD~~~-~~~~g-~~~~~GR~~d 215 (228)
..+|+-|+|--. .++|| .+.+..|.++
T Consensus 55 p~~W~ptPDGi~L~~~dGs~l~ff~r~~~ 83 (101)
T 1smp_I 55 PVGWRPTPDGLTLTQADGSAVAFFSRNRD 83 (101)
T ss_dssp CCEEEECSSEEEEECTTSCEEEEEEEETT
T ss_pred CcccccCCCEEEEEcCCCCEEEEecccCC
Confidence 678999999544 56665 5888889887
No 90
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=24.44 E-value=2.2e+02 Score=23.49 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=39.9
Q ss_pred cEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhc
Q 027096 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKH 78 (228)
Q Consensus 14 d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~ 78 (228)
-++....|+.+-..+. ..+..+|..|.++++-+. . +...+.+++.+. ....+..++ ..-..|.++
T Consensus 170 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~t~~~l~~l~~eaGlP~gv~~vv~g~~~~~g~~L~~~ 245 (504)
T 3ek1_A 170 GVTAAITPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSN 245 (504)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTTEEECCSCHHHHHHHHHHC
T ss_pred eEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhC
Confidence 5777888875543222 236789999999999764 2 345566666663 344444443 345566665
No 91
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=23.55 E-value=3e+02 Score=22.36 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=51.2
Q ss_pred CCcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-CC---HHHHHHHHHhc--CceEEEech----HHHHHHHhcCC
Q 027096 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~--~~t~l~~~p----~~~~~l~~~~~ 80 (228)
|--+++..+|+.+-..+. ..+..+|..|.++++-+. .. ...+.+++.+. ....+..++ ..-..|..++
T Consensus 143 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~~~~L~~~~- 221 (475)
T 1euh_A 143 PVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQ- 221 (475)
T ss_dssp ECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCT-
T ss_pred ccceEEEECCCCchHHHHHHHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHHhCC-
Confidence 335788888886643332 247799999999999764 33 34456666653 333333332 2345555542
Q ss_pred CCCCCCCCceEEEEcccCCCHHHHHHHHHh
Q 027096 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (228)
Q Consensus 81 ~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~ 110 (228)
.++.+.+.|. .++.+.+.+.
T Consensus 222 -------~v~~V~fTGS---~~~g~~i~~~ 241 (475)
T 1euh_A 222 -------AVNFINFTGS---TGIGERIGKM 241 (475)
T ss_dssp -------TCCEEEEESC---HHHHHHHHHH
T ss_pred -------CcCEEEEECc---hHHHHHHHHh
Confidence 3556666553 4555555554
No 92
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=23.31 E-value=3.2e+02 Score=22.58 Aligned_cols=76 Identities=11% Similarity=-0.021 Sum_probs=45.8
Q ss_pred CcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhc--CceEEEec---hHHHHHHHhcCCCC
Q 027096 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH--RVTHIWVV---PPLILALAKHGLVK 82 (228)
Q Consensus 13 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~--~~t~l~~~---p~~~~~l~~~~~~~ 82 (228)
--++....|+.+-..+. ..+..+|..|.++++-+. .+...+.+++.+. ....+..+ +..-..|+++
T Consensus 151 ~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g~~~~g~~L~~~---- 226 (517)
T 3r31_A 151 LGVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNH---- 226 (517)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCCCTTHHHHHHTC----
T ss_pred ccEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEECCHHHHHHHHhC----
Confidence 35788888875543332 236789999999999763 3456677777665 33344433 3445556554
Q ss_pred CCCCCCceEEEEcc
Q 027096 83 KFDLSSLKLVGSGA 96 (228)
Q Consensus 83 ~~~~~~lr~~~~~G 96 (228)
+.++.+.+.|
T Consensus 227 ----p~vd~I~FTG 236 (517)
T 3r31_A 227 ----PDVAKVSLTG 236 (517)
T ss_dssp ----TTEEEEEEES
T ss_pred ----CCcCEEeccC
Confidence 2355555555
No 93
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=21.80 E-value=2.5e+02 Score=22.96 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCcEEEEecchhhHHhH-HHHHHHHhhcCcEEEEcCC-CC---HHHHHHHHHhc--CceEEEec---hHHHHHHHhc
Q 027096 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVV---PPLILALAKH 78 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~--~~t~l~~~---p~~~~~l~~~ 78 (228)
|--+++...|+.+-..+ ...+..+|..|.++++-+. .. ...+.+++.+. ....+..+ +..-..|+.+
T Consensus 139 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~ 215 (490)
T 3ju8_A 139 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAH 215 (490)
T ss_dssp ECSEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTC
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhC
Confidence 34577888887554332 2236688999999999764 33 34455666653 33333333 3455556554
No 94
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=21.67 E-value=3.1e+02 Score=22.13 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=45.3
Q ss_pred CCcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-CC---HHHHHHHHHhc--CceEEEec---hHHHHHHHhcCCC
Q 027096 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVV---PPLILALAKHGLV 81 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~--~~t~l~~~---p~~~~~l~~~~~~ 81 (228)
|--++...+|+.+-..+. ..+..+|..|.++++-+. .. ...+.+++.+. ....+..+ +.....|+.+
T Consensus 126 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g~~~~~~~l~~~--- 202 (462)
T 3etf_A 126 PLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMIND--- 202 (462)
T ss_dssp ECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCCCHHHHHHHHTS---
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEECCHHHHHHHhcC---
Confidence 345788888876543332 236789999999999764 33 34456666653 33333333 3445556554
Q ss_pred CCCCCCCceEEEEccc
Q 027096 82 KKFDLSSLKLVGSGAA 97 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~ 97 (228)
+.++.+.+.|.
T Consensus 203 -----~~v~~v~fTGS 213 (462)
T 3etf_A 203 -----PRIAAVTVTGS 213 (462)
T ss_dssp -----TTEEEEEEESC
T ss_pred -----CCCCEEEEeCC
Confidence 23556655553
No 95
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=21.16 E-value=94 Score=19.61 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=20.8
Q ss_pred cCCCeEEcCceEE-EcCCC-cEEEecccCC
Q 027096 188 DKKGWVHTGDLGY-FDGDG-QLYVVDRIKE 215 (228)
Q Consensus 188 ~~~~~~~TGD~~~-~~~~g-~~~~~GR~~d 215 (228)
...+|+-|+|--. .++|| .+.+..|.++
T Consensus 57 ~p~~W~ptPdGi~L~~~dGs~l~ff~r~~~ 86 (106)
T 1jiw_I 57 EPRAWRPTPAGIALLERGGLTLMLLGRQGE 86 (106)
T ss_dssp CCCEEEEETTEEEEECTTSCEEEEEEEEET
T ss_pred CCcccccCCCeEEEEcCCCCEEEeeeecCC
Confidence 3678999999544 56665 5778888887
No 96
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=21.03 E-value=2.7e+02 Score=21.00 Aligned_cols=54 Identities=6% Similarity=-0.193 Sum_probs=34.2
Q ss_pred CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-----CCHHHHHHHHHhcCceEEE
Q 027096 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-----FDLEMFLRAIEKHRVTHIW 66 (228)
Q Consensus 10 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~ 66 (228)
++++|.++...|.+|...+. ..+-..|..++.++- .+++.+.+.+.+.++..++
T Consensus 74 ~~~gd~vi~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~ 132 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGDRWE---QIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVA 132 (384)
T ss_dssp CCTTCEEEEECSSHHHHHHH---HHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEE
T ss_pred cCCCCEEEEecCCcchHHHH---HHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 57788888888877653222 123456777776642 4788888888775554443
No 97
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=20.78 E-value=40 Score=22.85 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=6.9
Q ss_pred EEcCCCcEEEec
Q 027096 200 YFDGDGQLYVVD 211 (228)
Q Consensus 200 ~~~~~g~~~~~G 211 (228)
+++.||.|++.|
T Consensus 28 ~I~~dG~W~y~G 39 (150)
T 2ra9_A 28 DINALGDWTYLG 39 (150)
T ss_dssp EECTTSCEEETT
T ss_pred EECCCCcEEECC
Confidence 555566665555
No 98
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=20.41 E-value=3.7e+02 Score=22.23 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=49.3
Q ss_pred CCcEEEEecchhhHHhHH-HHHHHHhhcCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEec---hHHHHHHHhcCCC
Q 027096 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVV---PPLILALAKHGLV 81 (228)
Q Consensus 12 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~l~~~---p~~~~~l~~~~~~ 81 (228)
|--+++...|+.+-..+. ..+..+|..|.++++-+. . +...+.+++.+. ....+..+ ......|++++
T Consensus 162 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~p-- 239 (521)
T 4e4g_A 162 PVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHP-- 239 (521)
T ss_dssp ECCEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT--
T ss_pred CCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhCC--
Confidence 335778888875543322 236689999999999764 2 345566777664 33334333 34456666543
Q ss_pred CCCCCCCceEEEEccc-CCCHHHHHHH
Q 027096 82 KKFDLSSLKLVGSGAA-PLGKELMEEC 107 (228)
Q Consensus 82 ~~~~~~~lr~~~~~G~-~l~~~~~~~~ 107 (228)
.++.+.+.|. ..-..+.+..
T Consensus 240 ------~vd~I~FTGS~~vG~~i~~~a 260 (521)
T 4e4g_A 240 ------DIAAVSFVGSTPIARYVYGTA 260 (521)
T ss_dssp ------TCCEEEEESCHHHHHHHHHHH
T ss_pred ------CcCEEEEECCHHHHHHHHHHH
Confidence 3555555553 2333334333
Done!