Query 027097
Match_columns 228
No_of_seqs 249 out of 2052
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3123 Diphthine synthase [Tr 100.0 4.7E-58 1E-62 374.8 16.5 223 1-227 1-224 (272)
2 PTZ00175 diphthine synthase; P 100.0 1E-54 2.2E-59 377.3 24.9 223 1-227 2-225 (270)
3 COG1798 DPH5 Diphthamide biosy 100.0 1.1E-51 2.4E-56 346.2 21.2 207 1-227 1-209 (260)
4 TIGR00522 dph5 diphthine synth 100.0 1.8E-42 3.9E-47 299.4 24.0 208 1-227 1-210 (257)
5 PRK04160 diphthine synthase; P 100.0 2.8E-34 6.1E-39 248.4 24.6 207 1-227 1-210 (258)
6 COG2875 CobM Precorrin-4 methy 100.0 1E-32 2.3E-37 229.6 14.9 214 1-225 4-230 (254)
7 COG1010 CobJ Precorrin-3B meth 100.0 1.4E-30 3E-35 217.4 16.9 183 1-224 4-194 (249)
8 PRK06136 uroporphyrin-III C-me 100.0 8.4E-30 1.8E-34 218.9 19.2 162 1-172 4-175 (249)
9 TIGR01469 cobA_cysG_Cterm urop 100.0 3.3E-29 7.1E-34 213.4 20.0 162 1-172 1-171 (236)
10 PF00590 TP_methylase: Tetrapy 100.0 8.6E-29 1.9E-33 206.6 20.7 183 1-227 1-196 (210)
11 TIGR01465 cobM_cbiF precorrin- 100.0 9.1E-29 2E-33 209.8 20.2 160 2-171 1-164 (229)
12 PLN02625 uroporphyrin-III C-me 100.0 1.4E-28 3E-33 213.4 20.3 161 1-171 16-186 (263)
13 COG2243 CobF Precorrin-2 methy 100.0 1.2E-28 2.6E-33 208.1 17.3 161 1-173 3-178 (234)
14 COG0007 CysG Uroporphyrinogen- 100.0 1.2E-28 2.6E-33 209.0 15.2 211 2-225 6-233 (244)
15 PRK05990 precorrin-2 C(20)-met 100.0 2.2E-27 4.9E-32 203.5 21.3 155 1-167 4-180 (241)
16 PRK15473 cbiF cobalt-precorrin 100.0 1.4E-27 2.9E-32 206.6 19.9 162 1-172 9-174 (257)
17 PRK05787 cobalt-precorrin-6Y C 100.0 1.8E-27 3.9E-32 199.3 18.8 149 1-171 1-152 (210)
18 PRK05948 precorrin-2 methyltra 100.0 2.8E-27 6E-32 202.4 20.0 161 1-172 5-181 (238)
19 PRK05576 cobalt-precorrin-2 C( 100.0 6E-27 1.3E-31 199.3 21.8 159 1-171 3-175 (229)
20 TIGR01467 cobI_cbiL precorrin- 100.0 1.1E-26 2.3E-31 197.6 22.0 158 1-169 2-174 (230)
21 PRK15478 cbiH cobalt-precorrin 100.0 7.1E-27 1.5E-31 200.4 19.6 155 1-172 1-163 (241)
22 PRK10637 cysG siroheme synthas 100.0 7.3E-27 1.6E-31 216.9 19.9 159 1-172 217-385 (457)
23 COG2241 CobL Precorrin-6B meth 99.9 1.3E-26 2.9E-31 193.3 17.0 148 1-170 1-149 (210)
24 TIGR01466 cobJ_cbiH precorrin- 99.9 8.2E-26 1.8E-30 193.2 21.4 119 2-131 1-124 (239)
25 PRK14994 SAM-dependent 16S rib 99.9 3.9E-26 8.5E-31 199.9 18.9 189 1-204 13-219 (287)
26 PRK05765 precorrin-3B C17-meth 99.9 1.1E-25 2.4E-30 193.6 19.5 154 1-170 3-163 (246)
27 PRK08284 precorrin 6A synthase 99.9 2.8E-26 6.1E-31 197.7 15.7 139 1-140 3-168 (253)
28 PRK07168 bifunctional uroporph 99.9 1.4E-25 3.1E-30 208.5 19.3 159 1-171 4-172 (474)
29 PRK05991 precorrin-3B C17-meth 99.9 3.1E-25 6.8E-30 191.1 19.1 120 1-131 4-130 (250)
30 TIGR02434 CobF precorrin-6A sy 99.9 1.3E-25 2.9E-30 193.1 12.9 139 1-140 2-167 (249)
31 TIGR02467 CbiE precorrin-6y C5 99.9 1.3E-24 2.7E-29 181.9 16.4 146 4-170 1-148 (204)
32 COG0313 Predicted methyltransf 99.9 3.5E-20 7.6E-25 159.1 18.0 187 1-204 6-212 (275)
33 TIGR00096 probable S-adenosylm 99.8 1.5E-19 3.2E-24 157.4 14.1 189 1-204 1-206 (276)
34 KOG1527 Uroporphyrin III methy 99.8 1.1E-19 2.3E-24 159.6 12.2 136 2-147 258-402 (506)
35 COG3956 Protein containing tet 99.3 5.1E-11 1.1E-15 104.9 10.9 119 1-130 4-135 (488)
36 COG0391 Uncharacterized conser 80.1 24 0.00052 31.8 10.3 29 3-34 170-199 (323)
37 COG1634 Uncharacterized Rossma 75.1 3 6.5E-05 35.6 3.0 68 2-89 55-124 (232)
38 TIGR00075 hypD hydrogenase exp 70.9 36 0.00078 31.2 9.1 93 68-168 76-171 (369)
39 TIGR02495 NrdG2 anaerobic ribo 66.1 27 0.00059 28.1 6.9 53 66-118 49-101 (191)
40 PRK15062 hydrogenase isoenzyme 65.5 57 0.0012 29.9 9.2 94 68-169 70-166 (364)
41 TIGR03365 Bsubt_queE 7-cyano-7 59.1 36 0.00077 29.0 6.5 56 66-121 58-114 (238)
42 COG1066 Sms Predicted ATP-depe 59.0 1.6E+02 0.0035 27.7 11.0 111 82-210 94-210 (456)
43 cd00885 cinA Competence-damage 56.7 11 0.00023 30.6 2.8 52 6-60 39-90 (170)
44 TIGR01917 gly_red_sel_B glycin 56.1 36 0.00077 31.8 6.3 55 66-120 321-377 (431)
45 COG0602 NrdG Organic radical a 56.1 38 0.00083 28.4 6.1 53 66-118 58-110 (212)
46 PF06414 Zeta_toxin: Zeta toxi 54.4 82 0.0018 25.6 7.8 46 68-113 80-125 (199)
47 COG1707 ACT domain-containing 54.3 73 0.0016 26.2 7.1 31 18-60 58-88 (218)
48 PF04312 DUF460: Protein of un 51.2 1.2E+02 0.0026 23.9 7.6 90 107-207 32-124 (138)
49 PRK14719 bifunctional RNAse/5- 51.2 81 0.0018 28.8 7.8 72 26-111 24-99 (360)
50 TIGR01918 various_sel_PB selen 49.8 51 0.0011 30.8 6.3 55 66-120 321-377 (431)
51 PF02441 Flavoprotein: Flavopr 45.7 34 0.00073 26.0 3.9 43 80-123 1-43 (129)
52 PRK13762 tRNA-modifying enzyme 45.1 46 0.001 29.7 5.2 40 80-119 131-170 (322)
53 TIGR01921 DAP-DH diaminopimela 44.3 87 0.0019 28.2 6.8 52 68-119 99-153 (324)
54 PF01936 NYN: NYN domain; Int 43.9 49 0.0011 24.9 4.6 42 69-114 83-126 (146)
55 COG0409 HypD Hydrogenase matur 43.7 1.8E+02 0.004 26.4 8.5 95 69-171 73-170 (364)
56 cd06167 LabA_like LabA_like pr 41.4 82 0.0018 24.0 5.6 42 71-116 89-132 (149)
57 PF13353 Fer4_12: 4Fe-4S singl 41.1 71 0.0015 23.9 5.1 52 68-119 39-96 (139)
58 COG1063 Tdh Threonine dehydrog 38.4 2.2E+02 0.0048 25.4 8.6 76 2-90 172-249 (350)
59 PF07302 AroM: AroM protein; 38.3 1.7E+02 0.0037 24.9 7.3 61 4-72 154-218 (221)
60 cd05013 SIS_RpiR RpiR-like pro 38.0 1.6E+02 0.0034 21.5 8.4 85 80-172 14-98 (139)
61 PRK01215 competence damage-ind 35.5 1.9E+02 0.004 25.2 7.3 53 5-60 42-94 (264)
62 PF06506 PrpR_N: Propionate ca 34.5 2.3E+02 0.005 22.6 7.4 55 24-91 33-89 (176)
63 COG1245 Predicted ATPase, RNas 34.0 64 0.0014 30.9 4.3 70 19-96 225-296 (591)
64 COG3473 Maleate cis-trans isom 33.7 2.5E+02 0.0055 24.0 7.4 91 15-113 55-149 (238)
65 PRK14180 bifunctional 5,10-met 33.1 3.4E+02 0.0075 23.9 9.8 41 80-120 33-76 (282)
66 TIGR00288 conserved hypothetic 33.1 1.5E+02 0.0033 23.9 5.9 31 80-114 106-136 (160)
67 COG1432 Uncharacterized conser 33.0 1.4E+02 0.003 24.3 5.8 45 72-120 101-147 (181)
68 cd07227 Pat_Fungal_NTE1 Fungal 33.0 35 0.00075 29.8 2.4 41 78-118 7-47 (269)
69 PF01924 HypD: Hydrogenase for 32.5 62 0.0013 29.5 3.9 90 68-167 65-159 (355)
70 TIGR02109 PQQ_syn_pqqE coenzym 31.3 1.2E+02 0.0025 27.1 5.6 39 81-119 55-93 (358)
71 PF11823 DUF3343: Protein of u 31.2 54 0.0012 22.3 2.7 19 103-121 21-39 (73)
72 COG1737 RpiR Transcriptional r 30.9 3.5E+02 0.0076 23.4 8.9 103 70-183 120-224 (281)
73 PRK09417 mogA molybdenum cofac 30.7 83 0.0018 26.1 4.2 51 6-59 45-97 (193)
74 COG1504 Uncharacterized conser 29.7 1.3E+02 0.0029 22.8 4.7 22 4-25 66-87 (121)
75 cd03145 GAT1_cyanophycinase Ty 29.6 2.3E+02 0.0049 23.6 6.8 114 1-122 1-129 (217)
76 COG0287 TyrA Prephenate dehydr 29.5 84 0.0018 27.6 4.2 15 20-34 59-73 (279)
77 PF03808 Glyco_tran_WecB: Glyc 29.0 1.6E+02 0.0036 23.5 5.6 75 21-111 1-78 (172)
78 KOG0024 Sorbitol dehydrogenase 28.7 1.6E+02 0.0035 26.8 5.8 30 2-33 173-202 (354)
79 PF13394 Fer4_14: 4Fe-4S singl 28.3 63 0.0014 23.6 2.9 39 81-119 49-92 (119)
80 PF00389 2-Hacid_dh: D-isomer 28.2 2.5E+02 0.0055 20.9 6.3 89 14-121 6-97 (133)
81 COG0159 TrpA Tryptophan syntha 27.5 1.3E+02 0.0028 26.3 5.0 29 80-109 18-46 (265)
82 cd03816 GT1_ALG1_like This fam 27.5 97 0.0021 28.2 4.5 30 80-115 32-61 (415)
83 TIGR01826 CofD_related conserv 27.3 2.7E+02 0.0059 24.9 7.1 19 14-32 161-179 (310)
84 PRK05301 pyrroloquinoline quin 27.3 2.2E+02 0.0047 25.7 6.7 40 81-120 64-103 (378)
85 PF06135 DUF965: Bacterial pro 27.2 68 0.0015 22.8 2.6 19 80-98 38-56 (79)
86 PF03345 DDOST_48kD: Oligosacc 26.9 4.6E+02 0.01 24.6 8.8 102 85-190 3-106 (423)
87 PF02719 Polysacc_synt_2: Poly 26.9 1E+02 0.0023 27.3 4.4 57 137-210 165-221 (293)
88 TIGR02884 spore_pdaA delta-lac 26.8 1.3E+02 0.0029 25.1 4.9 44 69-112 176-219 (224)
89 PF04055 Radical_SAM: Radical 26.5 1.5E+02 0.0032 22.0 4.8 39 80-118 46-87 (166)
90 COG0120 RpiA Ribose 5-phosphat 26.2 1.3E+02 0.0029 25.7 4.7 41 71-120 105-145 (227)
91 cd07399 MPP_YvnB Bacillus subt 25.4 2.6E+02 0.0055 23.1 6.3 53 66-118 20-80 (214)
92 cd04922 ACT_AKi-HSDH-ThrA_2 AC 25.4 85 0.0019 20.0 2.8 30 1-30 3-32 (66)
93 cd04917 ACT_AKiii-LysC-EC_2 AC 25.3 1.1E+02 0.0024 19.7 3.4 30 1-30 3-32 (64)
94 PF07287 DUF1446: Protein of u 24.7 3.9E+02 0.0084 24.5 7.7 28 5-32 1-30 (362)
95 cd01335 Radical_SAM Radical SA 24.6 2.5E+02 0.0055 21.4 6.0 39 80-118 45-85 (204)
96 PRK11337 DNA-binding transcrip 24.5 4.5E+02 0.0098 22.5 8.3 95 71-173 131-226 (292)
97 smart00046 DAGKc Diacylglycero 24.1 3.1E+02 0.0067 20.4 8.2 47 79-130 49-101 (124)
98 TIGR02493 PFLA pyruvate format 23.9 3.1E+02 0.0067 22.6 6.6 36 81-116 67-103 (235)
99 COG4555 NatA ABC-type Na+ tran 23.5 3.1E+02 0.0068 23.5 6.3 78 19-107 145-228 (245)
100 COG0206 FtsZ Cell division GTP 23.4 4.2E+02 0.0091 24.0 7.6 104 2-114 14-135 (338)
101 PRK05579 bifunctional phosphop 23.3 6E+02 0.013 23.5 9.0 52 66-117 170-238 (399)
102 PF08759 DUF1792: Domain of un 23.0 4.8E+02 0.01 22.3 7.9 78 21-109 111-192 (225)
103 COG0420 SbcD DNA repair exonuc 22.8 1.9E+02 0.004 26.2 5.4 52 65-116 24-84 (390)
104 cd06334 PBP1_ABC_ligand_bindin 22.2 5.5E+02 0.012 22.6 8.6 43 79-121 140-186 (351)
105 TIGR03820 lys_2_3_AblA lysine- 22.1 3.2E+02 0.007 25.5 6.8 36 80-115 156-195 (417)
106 cd07229 Pat_TGL3_like Triacylg 21.9 1.6E+02 0.0036 27.2 4.8 41 80-120 82-122 (391)
107 COG0731 Fe-S oxidoreductases [ 21.8 3.1E+02 0.0068 24.4 6.3 62 64-125 60-127 (296)
108 PRK11557 putative DNA-binding 21.7 5E+02 0.011 22.0 9.1 94 72-173 120-214 (278)
109 TIGR02826 RNR_activ_nrdG3 anae 21.5 3.3E+02 0.0072 21.3 5.9 52 66-118 48-99 (147)
110 smart00481 POLIIIAc DNA polyme 21.4 1.2E+02 0.0027 19.8 3.0 18 98-117 45-62 (67)
111 cd07186 CofD_like LPPG:FO 2-ph 21.1 2.8E+02 0.006 24.8 5.9 19 13-31 171-189 (303)
112 cd04924 ACT_AK-Arch_2 ACT doma 21.0 1.2E+02 0.0025 19.3 2.8 30 1-30 3-32 (66)
113 TIGR02764 spore_ybaN_pdaB poly 21.0 1.4E+02 0.0031 23.9 3.9 47 67-113 139-187 (191)
114 cd02071 MM_CoA_mut_B12_BD meth 21.0 3.6E+02 0.0077 20.0 10.3 107 3-123 2-118 (122)
115 COG0771 MurD UDP-N-acetylmuram 20.9 4.4E+02 0.0095 24.9 7.4 29 64-92 398-426 (448)
116 PRK14188 bifunctional 5,10-met 20.8 5.9E+02 0.013 22.5 10.5 32 191-227 138-169 (296)
117 PRK01390 murD UDP-N-acetylmura 20.7 4.4E+02 0.0095 24.3 7.5 28 65-92 407-438 (460)
118 PF01933 UPF0052: Uncharacteri 20.6 1.3E+02 0.0028 26.8 3.7 28 3-32 163-190 (300)
119 PRK03815 murD UDP-N-acetylmura 20.5 4.1E+02 0.009 24.4 7.2 27 66-92 355-381 (401)
120 cd04919 ACT_AK-Hom3_2 ACT doma 20.5 1.2E+02 0.0026 19.4 2.8 29 1-29 3-31 (66)
121 cd07225 Pat_PNPLA6_PNPLA7 Pata 20.1 1.7E+02 0.0037 25.9 4.4 47 73-119 7-53 (306)
122 cd07206 Pat_TGL3-4-5_SDP1 Tria 20.0 1.7E+02 0.0037 26.1 4.3 41 80-120 68-108 (298)
123 cd04915 ACT_AK-Ectoine_2 ACT d 20.0 1.1E+02 0.0024 20.2 2.6 29 1-30 4-32 (66)
No 1
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-58 Score=374.81 Aligned_cols=223 Identities=69% Similarity=1.135 Sum_probs=213.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
|+|+||+|.|+..+||+|+++++++|..||.+.|||+++.+.+. .++++++++++.+||+..|+..+.|++.+...
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l~~----~lEk~yGk~iilADRemvEq~sd~il~~ad~~ 76 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGLDA----TLEKFYGKEIILADREMVEQESDKILDEADKE 76 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhhhH----HHHHHhCceeEeccHHHHHhhHHHHhhhhhhc
Confidence 89999999999999999999999999999999999987332222 38899999999999999999999999998889
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCCCChHHHHHHHhhc
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~~ 160 (228)
+|++|+.||||.++||+.++.++++.|++|+||++.|.++|++++|+++|+||++++++|++++|+|+||||.|++|.+.
T Consensus 77 dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~~ 156 (272)
T KOG3123|consen 77 DVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQL 156 (272)
T ss_pred ceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEE-Eeccc
Q 027097 161 GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIIL-KQLQT 227 (228)
Q Consensus 161 g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~-~~~~~ 227 (228)
|+|||||||++.+||++|+|+||+|+|+|||||++++|++||||+++++++...++||+||. +|+|.
T Consensus 157 glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs 224 (272)
T KOG3123|consen 157 GLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGS 224 (272)
T ss_pred CceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999986 88875
No 2
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=1e-54 Score=377.26 Aligned_cols=223 Identities=66% Similarity=1.055 Sum_probs=202.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
|||+||+|||||++||+||+++|++||+|++|.|+|.+. +...+ .++.+++++....++..+++..+.+++.++++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~-~~~~~---~l~~~~gk~~~~~~r~~~e~~~~~ii~~a~~~ 77 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILI-NSNKE---KLEEFYGKPVIEADREMVEEGCDEILEEAKEK 77 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhc-cCCHH---HHHHhcCCeeEecCccCHHHHHHHHHHHhCCC
Confidence 799999999999999999999999999999999987651 12233 55556676665566667776667788888778
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCCCChHHHHHHHhhc
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~~ 160 (228)
+|++|++|||++|++|.+++.++++.|+++++|||+|+++|++++|+|+|+||.+++++|++.||+|.++|+.+++|+++
T Consensus 78 ~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~~ 157 (270)
T PTZ00175 78 NVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRDN 157 (270)
T ss_pred CEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEE-Eeccc
Q 027097 161 GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIIL-KQLQT 227 (228)
Q Consensus 161 g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~-~~~~~ 227 (228)
|+|||||||++.+|++.+++||+++.|+|+|||++++|+++|++++++..++.++++|++|+ .|+|+
T Consensus 158 glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~ 225 (270)
T PTZ00175 158 GLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGS 225 (270)
T ss_pred CCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999998776 58875
No 3
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-51 Score=346.21 Aligned_cols=207 Identities=50% Similarity=0.790 Sum_probs=192.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
|||+||+|+.|..+||+++++++++||.||++.|||.+ .+.+ ++.++++++++++.++|+.+|+..+.|++.|+++
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~-~~~~---~e~le~~~gkev~~~~R~dlE~~~~~il~~a~~~ 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSIL-LGSN---LEKLEELIGKEVILLDREDLEENSRSILDRAKDK 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeeccc-ccch---HHHHHHHhCCceEeccHHHHhhcchhHHHHHhcC
Confidence 99999999999999999999999999999999999986 2222 3378888999999999999998778899999999
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHHHhh
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~ 159 (228)
+|++|+.||||+++||..|+.+++++|++|+||||+|.++|+ +++|++.|+||+++|++|++.+|+|.+|||+|++|+.
T Consensus 77 ~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~ 156 (260)
T COG1798 77 DVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLE 156 (260)
T ss_pred CEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhhh
Confidence 999999999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEE-Eeccc
Q 027097 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIIL-KQLQT 227 (228)
Q Consensus 160 ~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~-~~~~~ 227 (228)
+|+||++|||++.+ .||||+++|+++|||+|++.+++.+++++++|+ +|+|.
T Consensus 157 ~GLHTl~lLDi~~~----------------~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs 209 (260)
T COG1798 157 RGLHTLVLLDIKED----------------ERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGS 209 (260)
T ss_pred cCccceEEEEeccc----------------ccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCC
Confidence 99999999999965 389999999999999999999999999977665 78763
No 4
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=1.8e-42 Score=299.42 Aligned_cols=208 Identities=47% Similarity=0.760 Sum_probs=179.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
|||+||+|||||++||+||+++|++||+||++.|++.+ .+... +.++.+.+++.....+..+++..+.+++.++++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l-~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~ii~~~~~~ 76 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKL-LGSSI---EEIEEFFGKRVVVLERSDVEENSFRLIERAKSK 76 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhh-ccccH---HHHHHHhCCcccccCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999887654 11112 255555666554444555666667788887668
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHHHhh
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~ 159 (228)
+|++|++|||++|+++.+++.++++.|++++|||||||++|+ |++|+|+++||.++++++.+.|++|.++++.+++|+.
T Consensus 77 ~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 77 DVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred CEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999976 6799999999999999999999998888999999999
Q ss_pred cCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEE-Eeccc
Q 027097 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIIL-KQLQT 227 (228)
Q Consensus 160 ~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~-~~~~~ 227 (228)
++.||+||||++.++ .|||++++++++|++++++..++.++++|++++ .|++.
T Consensus 157 ~~~~Tlvll~~~~~~---------------~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~ 210 (257)
T TIGR00522 157 IGLHTLVLLDIHPKE---------------NRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGS 210 (257)
T ss_pred cCCCcEEEEecccCc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCC
Confidence 999999999999754 589999999999999998888888998887666 46553
No 5
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=2.8e-34 Score=248.43 Aligned_cols=207 Identities=50% Similarity=0.771 Sum_probs=166.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHH-HHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKIL-SESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~-~~a~~ 79 (228)
|||+||+|||||++||+||+++|++||+|+++.+++.. ..+.++.+..+.+++....++..+++..+.++ +.+++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSIL----MGTTIEKLEELIGKEIIVLDREDVEQESEKIILEEAKE 76 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCcc----ccccHHHHHHHhCCceeecCHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999998775432 12223345555445433334555666666555 55556
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHHHh
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~ 158 (228)
++|++|++|||++|+++.+++..+++.|++++|+|||||++++ |++|+|+++||.+.++.+.+.++.+..+++.+++++
T Consensus 77 ~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~ 156 (258)
T PRK04160 77 KNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNL 156 (258)
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999975 689999999999999988777776666788899999
Q ss_pred hcCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCc-EEEEEeccc
Q 027097 159 SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHEL-KIILKQLQT 227 (228)
Q Consensus 159 ~~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~-~~v~~~~~~ 227 (228)
..+.+|+++++...+ .++|+++.++++|++++++..+|...+++ ++|+.+++.
T Consensus 157 ~~~~~~~vll~~~~~----------------~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~ 210 (258)
T PRK04160 157 ERGLHTLVLLDIKAD----------------GRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGS 210 (258)
T ss_pred hcCCCcEEEEEeccC----------------CcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCC
Confidence 999999999987643 46799999999999998888888776665 455566653
No 6
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=1e-32 Score=229.58 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=175.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
++||||.||||||+||+|+.++|++||+|+|.++ | ++++ .|+.+. +.+++-.....++++.+.+.+..++
T Consensus 4 ~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGS---L---V~~e---lL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~ 74 (254)
T COG2875 4 KVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGS---L---VPPE---LLEYCRPDAEIVNSASLTLEEIIDLMVDAVRE 74 (254)
T ss_pred eEEEEccCCCCcceeeehHHHHHhhCCEEEECCC---c---CCHH---HHhhcCCCCEEEecCcCCHHHHHHHHHHHHHc
Confidence 4899999999999999999999999999999985 2 4566 665443 4455544445688888888888777
Q ss_pred -CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCC-CCChHHHHHH
Q 027097 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR-PGSFYEKIKR 156 (228)
Q Consensus 80 -~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~-p~~~~~~i~~ 156 (228)
|+|++|.+|||.+|+...+.++++++.||+++++||||||.|+ |.+|..++..+.+.++++.+..++ |.+..|.+.+
T Consensus 75 Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~ 154 (254)
T COG2875 75 GKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAA 154 (254)
T ss_pred CCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHH
Confidence 9999999999999999999999999999999999999999975 569999999999999998887776 5556788888
Q ss_pred HhhcCCCeEEEEecccCCchhHHhhccccccCCCC--------ccCHHH-HHHHHHHHHHHhCCCCCCCCcEEEEEec
Q 027097 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPR--------YMTVNI-AIEQLLEVELLQGESGKAHELKIILKQL 225 (228)
Q Consensus 157 ~~~~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~-a~~~ll~~~~~~~~~~~~~~~~~v~~~~ 225 (228)
..+++....+||.+...++..+.|..+ .|.|+. .|+=.+ ....|.++++++++..+..+++++||..
T Consensus 155 la~~~aTm~I~L~v~~I~~vv~~L~~g--~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~rTAlIiVG~~ 230 (254)
T COG2875 155 LAKHGATMVIFLGVHAIDKVVEELLEG--GYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDV 230 (254)
T ss_pred HHhcCceeEeeehhhHHHHHHHHHhcC--CCCCCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCceeEEEEEEccc
Confidence 888887777789999888888888874 244331 232222 2467888899999899999999999874
No 7
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=99.97 E-value=1.4e-30 Score=217.41 Aligned_cols=183 Identities=22% Similarity=0.258 Sum_probs=147.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCC-
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE- 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~- 79 (228)
|||+||+|||+++++|++|.++|++||+|+ +|+.++ + .++...+++++..+....-+.++..++.+++
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~iv--GY~~Y~------d---~i~l~~~k~v~~s~m~~Ei~Ra~~AielA~~G 72 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIV--GYTTYL------D---LIELRPGKEVIRSGMREEIERAKEAIELAAEG 72 (249)
T ss_pred eEEEEEeCCCChhhCCHHHHHHHHhCCEEE--ecHHHH------H---HHhcCCCCEEEeCCcHhHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999 887775 1 4552235666654322222456778888888
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhC---CCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~---gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~ 155 (228)
++||++++|||.+|+...-.++.+.+. +++++|+||||+++|+ |++|.|+.+.. .++..|+++.| |+.|+
T Consensus 73 ~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF---~~ISLSDlLtP---we~Ie 146 (249)
T COG1010 73 RDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDF---CVISLSDLLTP---WEVIE 146 (249)
T ss_pred CeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccce---EEEEhHhcCCc---HHHHH
Confidence 899999999999999997777777655 4999999999999976 56999997644 55556899876 88888
Q ss_pred HHhhc---CCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEEEe
Q 027097 156 RNRSL---GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIILKQ 224 (228)
Q Consensus 156 ~~~~~---g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~~~ 224 (228)
+.+.. ....++|++...+ .|.++..+|.++|++ +.+++|++.+.|
T Consensus 147 kRl~aAA~adfVi~~YNP~s~----------------~R~~~~~~a~eil~~--------~r~~~tpVgivr 194 (249)
T COG1010 147 KRLRAAAEADFVIALYNPISK----------------RRPEQLGRAFEILRE--------HRSPDTPVGIVR 194 (249)
T ss_pred HHHHHHhhCCEEEEEECCccc----------------cchHHHHHHHHHHHH--------hcCCCCcEEEEe
Confidence 87765 5678899998865 477899999999999 778888888765
No 8
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.97 E-value=8.4e-30 Score=218.85 Aligned_cols=162 Identities=22% Similarity=0.248 Sum_probs=123.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeec------ChhhHHHHHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALA------DREMVEEKADKI 73 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~------~~~~~e~~~~~i 73 (228)
|||+||+|||||++||+||+++|++||+|+++.+++ .+ .++.+. +++.... ....+++..+.+
T Consensus 4 ~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~-------~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 73 (249)
T PRK06136 4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVS-------PE---ILAYAKPDAELIYVGKRAGRHSTKQEEINRLL 73 (249)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCC-------HH---HHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHH
Confidence 599999999999999999999999999999876421 22 222111 1122111 112234455666
Q ss_pred HHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChH
Q 027097 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY 151 (228)
Q Consensus 74 ~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~ 151 (228)
.+.+.+ ++||+|++|||++|+++.++++++++.|++++|||||||++++ |++|+||++++++.++.+.+.|.++.+..
T Consensus 74 ~~~~~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (249)
T PRK06136 74 VDYARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLE 153 (249)
T ss_pred HHHHHCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccc
Confidence 666655 8999999999999999999999999889999999999999975 67999999999888888888888765433
Q ss_pred -HHHHHHhhcCCCeEEEEeccc
Q 027097 152 -EKIKRNRSLGLHTLCLLDIRV 172 (228)
Q Consensus 152 -~~i~~~~~~g~~tlvlld~~~ 172 (228)
...++++..+.+|+++++...
T Consensus 154 ~~~~~~~l~~~~~~~vl~~~~~ 175 (249)
T PRK06136 154 PEVNWSALADGADTLVIYMGVR 175 (249)
T ss_pred cccCHHHHhCCCCeEEEECCHH
Confidence 223466677779999987663
No 9
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=99.97 E-value=3.3e-29 Score=213.36 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=120.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeec------ChhhHHHHHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALA------DREMVEEKADKI 73 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~------~~~~~e~~~~~i 73 (228)
.||+||+|||||++||++|+++|++||+|+++.+++ .+ .++.+. +.+.... ....+++..+.+
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~-------~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 70 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVS-------PE---ILAYAPPQAELIDVGKRPGCHSKKQEEINRLL 70 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCC-------HH---HHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 489999999999999999999999999999876432 22 222111 1122211 112355566666
Q ss_pred HHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChH
Q 027097 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY 151 (228)
Q Consensus 74 ~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~ 151 (228)
.+.+++ ++|+++++|||++|+++.++++++.+.|++++++|||||++++ |++|+||++++.+.++.+.+.|+++.+..
T Consensus 71 ~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~ 150 (236)
T TIGR01469 71 VELAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKAL 150 (236)
T ss_pred HHHHHCCCeEEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCccc
Confidence 666655 8999999999999999999999999889999999999999975 68999999988755666667787765432
Q ss_pred HHHHHHhhcCCCeEEEEeccc
Q 027097 152 EKIKRNRSLGLHTLCLLDIRV 172 (228)
Q Consensus 152 ~~i~~~~~~g~~tlvlld~~~ 172 (228)
...++++..+.+|+++++...
T Consensus 151 ~~~~~~~~~~~~~~vl~~~~~ 171 (236)
T TIGR01469 151 EVDWEALAKGAGTLVIYMGVR 171 (236)
T ss_pred ccCHHHHhcCCCeEEEECCHH
Confidence 222456667778999987543
No 10
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=99.97 E-value=8.6e-29 Score=206.55 Aligned_cols=183 Identities=30% Similarity=0.294 Sum_probs=133.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC------CCeeecChhhHHHHHHHH-
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG------KPIALADREMVEEKADKI- 73 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~------~~i~~~~~~~~e~~~~~i- 73 (228)
|||+||+|||||++||++|+++|++||+|+++.. +.+.+..+.. +.... ....+++..+.+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 68 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPER-----------ALEIVRDLLPEIFPMGKDRES-LEESYDEIAEIIE 68 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETT-----------CHHHHHHHHHTEETTSSEEEE-EHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCccccccc-----------chHHHHhhccccccccccccc-hhhhhhHHHHHHH
Confidence 8999999999999999999999999999998763 1224444421 11111 134466777777
Q ss_pred -HHHcCC-CcEEEEecCCCCCcccHHHHHHHHHh--CCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCC-
Q 027097 74 -LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRP- 147 (228)
Q Consensus 74 -~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~--~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p- 147 (228)
.+.+++ ++|+++++|||++|+++.++++.+++ .|++++++|||||++++ |++|+||++++....+. .++
T Consensus 69 ~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~-----~~~~ 143 (210)
T PF00590_consen 69 AIEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHG-----LRDL 143 (210)
T ss_dssp HHHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEE-----TSSS
T ss_pred HHHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEE-----eccc
Confidence 677766 88999999999999999999999888 99999999999999975 68999999988777665 111
Q ss_pred CChHHHHHHHhhcCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccc
Q 027097 148 GSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESGKAHELKIILKQLQT 227 (228)
Q Consensus 148 ~~~~~~i~~~~~~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~~~~~~ 227 (228)
.........++..+.+|+++|... .++.+.++.|++. . .-....++|+.|+++
T Consensus 144 ~~~~~~~l~~~~~~~~~~vil~~~---------------------~~~~~i~~~L~~~--~----~~~~~~v~v~~~lg~ 196 (210)
T PF00590_consen 144 DTEREKLLENLLANGDTLVILTDP---------------------RRLAEIAELLLER--L----YPPDTPVAVGERLGY 196 (210)
T ss_dssp SHHHHHHHHHHHTTTSEEEEEESG---------------------CCHHHHHHHHHHH--S----HTTTSEEEEEESTTS
T ss_pred ccchHHHHHHHHhCCCEEEEEccC---------------------chHHHHHHHHHhh--C----CCCCcEEEHHHhcCC
Confidence 112345666777778999998654 1588888888773 0 011135666677764
No 11
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=99.97 E-value=9.1e-29 Score=209.84 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=119.1
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC-
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~- 79 (228)
+|+||+|||||++||+||+++|++||+|++++.. ...+ .++.+. ++++.......+++..+.+.+.+++
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 71 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSL------VPPE---LLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREG 71 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCC------CCHH---HHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCC
Confidence 6899999999999999999999999999986531 1112 233222 2233322123466677777776665
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCC-ChHHHHHHH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKRN 157 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~-~~~~~i~~~ 157 (228)
++|++|++|||++|+++.++++.+++.|++++|+|||||++++ |++|+||+.++.+.++.+.+.|+++. ...+.+. .
T Consensus 72 ~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~-~ 150 (229)
T TIGR01465 72 KLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLA-D 150 (229)
T ss_pred CeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHH-H
Confidence 7999999999999999999999999999999999999999976 67999999999888888888887632 2223343 3
Q ss_pred hhcCCCeEEEEecc
Q 027097 158 RSLGLHTLCLLDIR 171 (228)
Q Consensus 158 ~~~g~~tlvlld~~ 171 (228)
+.....++++|...
T Consensus 151 ~~~~~~~~vi~~~~ 164 (229)
T TIGR01465 151 LAKHGATMAIFLSA 164 (229)
T ss_pred HhcCCCeEEEECcH
Confidence 33444677776554
No 12
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=99.96 E-value=1.4e-28 Score=213.43 Aligned_cols=161 Identities=23% Similarity=0.258 Sum_probs=120.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeee------cChhhHHHHHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIAL------ADREMVEEKADKI 73 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~------~~~~~~e~~~~~i 73 (228)
+||+||+|||||++||++|+++|++||+|+++.+.+ .+ .++.+. +++... .....+++..+.+
T Consensus 16 ~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~-------~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (263)
T PLN02625 16 NVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVS-------PD---ILDLVPPGAELLYVGKRGGYHSRTQEEIHELL 85 (263)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCC-------HH---HHHhcCCCCEEEecCCcCCccccCHHHHHHHH
Confidence 589999999999999999999999999999876522 22 222121 122211 1112355666667
Q ss_pred HHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChH
Q 027097 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY 151 (228)
Q Consensus 74 ~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~ 151 (228)
.+.+.+ ++|++|++|||++|+++.++++.+++.|++++|||||||++++ |++|+||++.+...++.+.+.|+++.+..
T Consensus 86 ~~~~~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~ 165 (263)
T PLN02625 86 LSFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTD 165 (263)
T ss_pred HHHHHCCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCccc
Confidence 676655 8999999999999999999999999999999999999999975 68999999877666666677888754322
Q ss_pred H-HHHHHhhcCCCeEEEEecc
Q 027097 152 E-KIKRNRSLGLHTLCLLDIR 171 (228)
Q Consensus 152 ~-~i~~~~~~g~~tlvlld~~ 171 (228)
+ ...+.+..+.+|++++...
T Consensus 166 ~~~~~~~~~~~~~t~vl~~~~ 186 (263)
T PLN02625 166 PLDVAEAAADPDTTLVVYMGL 186 (263)
T ss_pred chhhHHHHhCCCCeEEEECch
Confidence 1 2345556667899998754
No 13
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-28 Score=208.08 Aligned_cols=161 Identities=27% Similarity=0.378 Sum_probs=124.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC--CC---eee---cC-h----hhHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KP---IAL---AD-R----EMVE 67 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~--~~---i~~---~~-~----~~~e 67 (228)
|||.||+|||||++||+||+++|++||+|++++.... .+-+..+++++.. .. +.+ .+ + +.|+
T Consensus 3 klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~-----~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~ 77 (234)
T COG2243 3 KLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGK-----GSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWE 77 (234)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCc-----cchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHH
Confidence 6999999999999999999999999999999944221 1223336766643 11 121 23 2 3477
Q ss_pred HHHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCC
Q 027097 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (228)
Q Consensus 68 ~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~ 145 (228)
+.++.|.+++.+ ++|+|++.|||++|||+.++.++++.+|+++++||||||++|+ |++|+|+...+++.+|.+.+..-
T Consensus 78 e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~~ 157 (234)
T COG2243 78 EAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRPD 157 (234)
T ss_pred HHHHHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCch
Confidence 788888888877 7999999999999999999999999999999999999999986 57999999999998988765421
Q ss_pred CCCChHHHHHHHhhcCCCeEEEEecccC
Q 027097 146 RPGSFYEKIKRNRSLGLHTLCLLDIRVK 173 (228)
Q Consensus 146 ~p~~~~~~i~~~~~~g~~tlvlld~~~~ 173 (228)
+.+ +..-...+|.|+|.....
T Consensus 158 ------~~~-~~~l~~~d~~VvMK~~~~ 178 (234)
T COG2243 158 ------EEL-ERALADFDTAVVMKVGRN 178 (234)
T ss_pred ------hhH-HhHHhhCCeEEEEecCCc
Confidence 112 223345578888887753
No 14
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-28 Score=209.04 Aligned_cols=211 Identities=20% Similarity=0.221 Sum_probs=150.7
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeec------ChhhHHHHHHHHH
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALA------DREMVEEKADKIL 74 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~------~~~~~e~~~~~i~ 74 (228)
+|+||.|||||++||+||+++|++||+|+|+.-. +.+ .++... +.+.+.. .....+++.+.+.
T Consensus 6 V~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV-------~~~---il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv 75 (244)
T COG0007 6 VYLVGAGPGDPGLLTLRALRALQEADVVLYDRLV-------PEE---VLALARRDAERIYVGKRPGGHSKPQDEINALLV 75 (244)
T ss_pred EEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcC-------CHH---HHHhhccCCEEEEecCcCCCCCCCHHHHHHHHH
Confidence 7999999999999999999999999999998643 344 343322 2332221 1223677888888
Q ss_pred HHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHH
Q 027097 75 SESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYE 152 (228)
Q Consensus 75 ~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~ 152 (228)
+.+++ ++|++|+.|||++|+++.+.++.+.+.||++||+|||||..|+ +.+|+|+++.+.+.++.|.+.|.++..
T Consensus 76 ~~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~--- 152 (244)
T COG0007 76 ELAREGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGK--- 152 (244)
T ss_pred HHHhcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCC---
Confidence 88887 8999999999999999999999999999999999999999876 579999999999999999999887543
Q ss_pred HHHHHhhcCCCeEEEEec-ccCCchhHHhhcc-ccccCCCC---ccC-HHH--HHHHHHHHHHHhCCCCCCCCcEEEEEe
Q 027097 153 KIKRNRSLGLHTLCLLDI-RVKEPSLESLCRG-KKLYEPPR---YMT-VNI--AIEQLLEVELLQGESGKAHELKIILKQ 224 (228)
Q Consensus 153 ~i~~~~~~g~~tlvlld~-~~~~~~~~~l~~~-~~~~~~~~---~~~-~~~--a~~~ll~~~~~~~~~~~~~~~~~v~~~ 224 (228)
.-++.+.....|+++|+- +.-++....|.+. +..-.|.- ..| ++| ....|-++.+...+..+++..++|+|+
T Consensus 153 ~~w~~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~PaiiviG~ 232 (244)
T COG0007 153 LDWEALARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGE 232 (244)
T ss_pred cChHHhcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCCEEEEEcc
Confidence 224666667788887554 4333344455553 22222221 111 111 123344454454445577788889886
Q ss_pred c
Q 027097 225 L 225 (228)
Q Consensus 225 ~ 225 (228)
.
T Consensus 233 v 233 (244)
T COG0007 233 V 233 (244)
T ss_pred e
Confidence 4
No 15
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.96 E-value=2.2e-27 Score=203.50 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=110.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC--CCe---ee---cC----------
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPI---AL---AD---------- 62 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~--~~i---~~---~~---------- 62 (228)
.||+||+|||||++||+||+++|++||+|+++..... ...+.+.++.+.. +++ .+ .+
T Consensus 4 ~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~-----~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~ 78 (241)
T PRK05990 4 RLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGK-----KGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYET 78 (241)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCC-----cchHHHHHHHHcCCCceEEEeecCCccccccccchhhh
Confidence 4899999999999999999999999999998853211 1122335554432 222 11 11
Q ss_pred --hhhHHHHHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEE
Q 027097 63 --REMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSI 138 (228)
Q Consensus 63 --~~~~e~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v 138 (228)
++.|++.++.+.+.+++ ++|++|+.|||++|+++.++.+.++ .+++++|||||||++|+ |++|+|+...++.+++
T Consensus 79 ~~~~~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i 157 (241)
T PRK05990 79 VIADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSV 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEE
Confidence 22356677788888876 8999999999999999999988874 47999999999999976 5799999987777776
Q ss_pred ecccCCCCCCChHHHHHHHhhcCCCeEEE
Q 027097 139 PFFTETWRPGSFYEKIKRNRSLGLHTLCL 167 (228)
Q Consensus 139 ~~~~~~~~p~~~~~~i~~~~~~g~~tlvl 167 (228)
.... . + .+.+...+.....++++
T Consensus 158 ~~~~--~-~---~~~l~~~l~~~~~~vv~ 180 (241)
T PRK05990 158 LSGV--L-P---EEELRRRLADADAAVIM 180 (241)
T ss_pred EcCC--C-C---hHHHHHHHhCCCCEEEE
Confidence 5422 1 1 23445555544334444
No 16
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=206.62 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=116.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+||+|||||++||++|+++|++||+|++++.. ...+ .++.+. .++........+++..+.+.+.+++
T Consensus 9 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~------~~~~---l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 79 (257)
T PRK15473 9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSL------INTE---LLDYCPAQAECHDSAELHLEQIIDLMEAGVKA 79 (257)
T ss_pred EEEEEEeCCCChHHhhHHHHHHHHhCCEEEEeccc------CCHH---HHhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 48999999999999999999999999999987531 1122 222221 1222221123466777777776655
Q ss_pred -CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCC-ChHHHHHH
Q 027097 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKR 156 (228)
Q Consensus 80 -~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~-~~~~~i~~ 156 (228)
++||+|++|||++|+++.++++.+.+.|++++|+|||||++++ |++|+||...+..-.+.+.+.|+++. +..+.+.
T Consensus 80 g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~l~- 158 (257)
T PRK15473 80 GKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLE- 158 (257)
T ss_pred CCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhhHH-
Confidence 8999999999999999999999999999999999999999975 67999998554444444456667632 2223333
Q ss_pred HhhcCCCeEEEEeccc
Q 027097 157 NRSLGLHTLCLLDIRV 172 (228)
Q Consensus 157 ~~~~g~~tlvlld~~~ 172 (228)
.+.....|++++....
T Consensus 159 ~~~~~~~t~vi~~~~~ 174 (257)
T PRK15473 159 SFASHQTSMAIFLSVQ 174 (257)
T ss_pred HHhcCCCeEEEECCch
Confidence 4445556888876543
No 17
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.96 E-value=1.8e-27 Score=199.27 Aligned_cols=149 Identities=27% Similarity=0.372 Sum_probs=104.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CC-CeeecChhhHHHHHHHHHHHcC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GK-PIALADREMVEEKADKILSESQ 78 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~-~i~~~~~~~~e~~~~~i~~~a~ 78 (228)
|||+||+|||||++||+||+++|++||+|+++. ++++.++.+. ++ .+.... .++..+.+....+
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~ 66 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-----------RVLELFPELIDGEAFVLTAG---LRDLLEWLELAAK 66 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-----------hHHHHHHHhccCccEEecCC---HHHHHHHHHHhhC
Confidence 899999999999999999999999999999643 2333555554 22 222222 2333344433334
Q ss_pred CCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHHH
Q 027097 79 ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRN 157 (228)
Q Consensus 79 ~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~ 157 (228)
.++|+++++|||++|+.+..+.+. ...+++++++|||||++++ |++|+||+++ . +.+.|.++... +.+...
T Consensus 67 g~~V~~l~~GDP~~~~~~~~~~~~-~~~~~~veviPGiSs~~aaaa~~g~~l~~~----~--~is~~~~~~~~-~~l~~~ 138 (210)
T PRK05787 67 GKNVVVLSTGDPLFSGLGKLLKVR-RAVAEDVEVIPGISSVQYAAARLGIDMNDV----V--FTTSHGRGPNF-EELEDL 138 (210)
T ss_pred CCcEEEEecCCccccccHHHHHHH-hccCCCeEEEcCHHHHHHHHHHhCCCHHHc----E--EEeecCCCcch-HHHHHH
Confidence 489999999999999977555544 3445899999999999975 6799999863 1 23456665443 456666
Q ss_pred hhcCCCeEEEEecc
Q 027097 158 RSLGLHTLCLLDIR 171 (228)
Q Consensus 158 ~~~g~~tlvlld~~ 171 (228)
++.+.++++++|..
T Consensus 139 ~~~~~~~v~l~~~~ 152 (210)
T PRK05787 139 LKNGRKVIMLPDPR 152 (210)
T ss_pred HHcCCeEEEEcCCC
Confidence 66777777776554
No 18
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.96 E-value=2.8e-27 Score=202.40 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=117.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC--CCeee------cChh----hHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPIAL------ADRE----MVEE 68 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~--~~i~~------~~~~----~~e~ 68 (228)
.||+||+|||||++||+||+++|++||+|++|.....- ..-+.+.++.+.. +++.. .+++ .|++
T Consensus 5 ~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~----~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~ 80 (238)
T PRK05948 5 TLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQ----PGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQA 80 (238)
T ss_pred EEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCc----hhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHH
Confidence 38999999999999999999999999999998643110 0112235655532 22221 1222 3556
Q ss_pred HHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHh--CCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCC
Q 027097 69 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 144 (228)
Q Consensus 69 ~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~--~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~ 144 (228)
.++.+.+.+.+ ++|++|+.|||++|++..++.+.+++ .|++++|||||||++|+ |++|+||...++.+++++. |
T Consensus 81 ~~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~--~ 158 (238)
T PRK05948 81 AADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPA--L 158 (238)
T ss_pred HHHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcC--C
Confidence 67777777766 89999999999999999999999877 48999999999999976 5799999988887777653 3
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEEeccc
Q 027097 145 WRPGSFYEKIKRNRSLGLHTLCLLDIRV 172 (228)
Q Consensus 145 ~~p~~~~~~i~~~~~~g~~tlvlld~~~ 172 (228)
..+ +.+.+.+. ..+++|+|....
T Consensus 159 ~~~----~~l~~~l~-~~~~vVlmk~~~ 181 (238)
T PRK05948 159 YHL----EELEQALT-WADVVVLMKVSS 181 (238)
T ss_pred CCH----HHHHHHHh-CCCEEEEEECCc
Confidence 322 23333333 446888888663
No 19
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.96 E-value=6e-27 Score=199.27 Aligned_cols=159 Identities=27% Similarity=0.318 Sum_probs=116.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCC--Ceeec------C----hhhHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK--PIALA------D----REMVEE 68 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~--~i~~~------~----~~~~e~ 68 (228)
|||+||+|||||++||++|+++|++||+|+++++++.- .....+.+..+.+. ++... + +..+++
T Consensus 3 ~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (229)
T PRK05576 3 KLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGG----GSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKE 78 (229)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCc----hhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHH
Confidence 69999999999999999999999999999998764211 01112245545332 22211 1 233556
Q ss_pred HHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCC
Q 027097 69 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 146 (228)
Q Consensus 69 ~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~ 146 (228)
..+.+.+.+.+ ++|++|++|||++|+++.++++.+++.|++++|+|||||++++ |++|+||...+..+.++.. |.
T Consensus 79 ~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~--~~- 155 (229)
T PRK05576 79 NAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPA--TR- 155 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEEC--CC-
Confidence 67777776665 7999999999999999999999998889999999999999975 6799999977665666543 32
Q ss_pred CCChHHHHHHHhhcCCCeEEEEecc
Q 027097 147 PGSFYEKIKRNRSLGLHTLCLLDIR 171 (228)
Q Consensus 147 p~~~~~~i~~~~~~g~~tlvlld~~ 171 (228)
.+.+...+..+ .|++++...
T Consensus 156 ----~~~l~~~l~~~-~~~vl~~~~ 175 (229)
T PRK05576 156 ----EALIEQALTDF-DSVVLMKVY 175 (229)
T ss_pred ----HHHHHHHhhcC-CEEEEEecC
Confidence 23344555444 788888543
No 20
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=99.95 E-value=1.1e-26 Score=197.63 Aligned_cols=158 Identities=28% Similarity=0.378 Sum_probs=114.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC---CCee---e---cCh----hhHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA---L---ADR----EMVE 67 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~---~~i~---~---~~~----~~~e 67 (228)
|||+||+|||||++||++|+++|++||+|+++.++... ...+++.+..+.+ +++. + .++ ..++
T Consensus 2 ~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (230)
T TIGR01467 2 KLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGR----ESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWD 77 (230)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCC----cchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHH
Confidence 79999999999999999999999999999998764210 0123334455432 3322 1 111 2245
Q ss_pred HHHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCC
Q 027097 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (228)
Q Consensus 68 ~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~ 145 (228)
+..+.+.+.+++ ++|++|++|||++|+++.++++.+.+.|+++++||||||++++ |++|++|.+.+..+++. +.|.
T Consensus 78 ~~~~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~--~~~~ 155 (230)
T TIGR01467 78 EAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAIL--PATA 155 (230)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEE--eCCC
Confidence 566677777765 8999999999999999999999998889999999999999975 67999999866555554 3332
Q ss_pred CCCChHHHHHHHhhcCCCeEEEEe
Q 027097 146 RPGSFYEKIKRNRSLGLHTLCLLD 169 (228)
Q Consensus 146 ~p~~~~~~i~~~~~~g~~tlvlld 169 (228)
. .+.+.+.+..+ .|+++|.
T Consensus 156 ~----~~~~~~~~~~~-~~vvil~ 174 (230)
T TIGR01467 156 G----EAELEKALAEF-DTVVLMK 174 (230)
T ss_pred C----HHHHHHHhccC-CeEEEEe
Confidence 2 23344555555 5667654
No 21
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=99.95 E-value=7.1e-27 Score=200.37 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=106.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+||+|||||++||+||+++|++||+|+++.. + .+.+..+. +++++........+..+.+++.+++
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~--~---------~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 69 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKT--Y---------THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQA 69 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCc--H---------HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999996542 1 11344332 3333332222223334556676766
Q ss_pred -CcEEEEecCCCCCcccHHHHHHHHHhCC--CcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHH-
Q 027097 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKI- 154 (228)
Q Consensus 80 -~~Va~l~~GDP~~~~~~~~l~~~~~~~g--i~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i- 154 (228)
++|++|++|||++|++..++.+.+.+.+ ++++|+|||||++++ |++|+|+.+.+...++ +....| |+.+
T Consensus 70 g~~Vv~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~---~~~~~~---~~~~~ 143 (241)
T PRK15478 70 GHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISL---SDLLTP---WPVIE 143 (241)
T ss_pred CCeEEEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeec---ccCCCC---cHHHH
Confidence 8999999999999999999998887654 669999999999975 6799999654333332 111112 3222
Q ss_pred --HHHhhcCCCeEEEEeccc
Q 027097 155 --KRNRSLGLHTLCLLDIRV 172 (228)
Q Consensus 155 --~~~~~~g~~tlvlld~~~ 172 (228)
+..+.....|++|++...
T Consensus 144 ~~~~a~~~~~~tlvlym~~~ 163 (241)
T PRK15478 144 KRIVAAGEADFVICFYNPRS 163 (241)
T ss_pred HhHHHHhcCCeEEEEECCcc
Confidence 223445557888877654
No 22
>PRK10637 cysG siroheme synthase; Provisional
Probab=99.95 E-value=7.3e-27 Score=216.94 Aligned_cols=159 Identities=22% Similarity=0.257 Sum_probs=120.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC---CCeeecC-----hhhHHHHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIALAD-----REMVEEKADK 72 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~---~~i~~~~-----~~~~e~~~~~ 72 (228)
+||+||+|||||++||++|+++|++||+|+++.+.+ .+ +..+.. ..+.... ...+++..+.
T Consensus 217 ~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (457)
T PRK10637 217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVS-------DD----IMNLVRRDADRVFVGKRAGYHCVPQEEINQI 285 (457)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCC-------HH----HHhhcccCCEEEEcCCCCCCCCcCHHHHHHH
Confidence 489999999999999999999999999999875432 11 111111 1111110 1125666677
Q ss_pred HHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCCh
Q 027097 73 ILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF 150 (228)
Q Consensus 73 i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~ 150 (228)
+.+.+.+ ++|++|++|||++|+++.++++++.+.|++++|+|||||++++ |++|+||+.++.+.++.+.+.|+++...
T Consensus 286 i~~~~~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~ 365 (457)
T PRK10637 286 LLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGE 365 (457)
T ss_pred HHHHHhCCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCc
Confidence 7777666 7899999999999999999999998889999999999999975 6799999998876676667888765443
Q ss_pred HHHHHHHhhcCCCeEEEEeccc
Q 027097 151 YEKIKRNRSLGLHTLCLLDIRV 172 (228)
Q Consensus 151 ~~~i~~~~~~g~~tlvlld~~~ 172 (228)
.+ +.++..+.+|++|++...
T Consensus 366 ~~--~~~l~~~~~t~Vl~~~~~ 385 (457)
T PRK10637 366 LD--WENLAAEKQTLVFYMGLN 385 (457)
T ss_pred cC--HHHHhCCCCeEEEECCHh
Confidence 22 355667779999988664
No 23
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.95 E-value=1.3e-26 Score=193.34 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=105.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
||++||+||||+++||.+|+++|++||+|+ ++ .++++.+..+..++..........+..+.+..+.+++
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~--G~---------kr~L~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~g~ 69 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVA--GS---------KRHLELLPPLIKAERIIWPYPFDAESLEEILAERKGR 69 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEe--ec---------HHHHHhhhccccceEEEeccccchHHHHHHHHHhCCC
Confidence 899999999999999999999999999999 65 4545566655543332212222222334555554478
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhH-HHHhCCccccCCceeEEecccCCCCCCChHHHHHHHhh
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA-VGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a-~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~ 159 (228)
+||+|.+|||++|+-+..+.+.+.. .+++|||||||+|+ +|++|++|++ +.+.|.|+++ .+.+...+.
T Consensus 70 ~v~VLasGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~------~~~islHgr~---~~~l~~~~~ 138 (210)
T COG2241 70 DVVVLASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQD------TEVISLHGRP---VELLRPLLE 138 (210)
T ss_pred CeEEEecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHH------eEEEEecCCC---HHHHHHHHh
Confidence 9999999999999999877776654 58999999999996 5789999996 3444677776 455555554
Q ss_pred cCCCeEEEEec
Q 027097 160 LGLHTLCLLDI 170 (228)
Q Consensus 160 ~g~~tlvlld~ 170 (228)
.+...+++.+-
T Consensus 139 ~~~~~vil~~~ 149 (210)
T COG2241 139 NGRRLVILTPD 149 (210)
T ss_pred CCceEEEeCCC
Confidence 44334444443
No 24
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.95 E-value=8.2e-26 Score=193.16 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=90.0
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC-
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~- 79 (228)
||+||+|||||++||++|+++|++||+|+++.. +++.++.+. ++++.........+..+.+.+.+.+
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 69 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT-----------YLDLIEDLIPGKEVVTSGMREEIARAELAIELAAEG 69 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc-----------HHHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999996632 222555543 3333322222222233445555555
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCC--CcEEEECCCCHHhHH-HHhCCcccc
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYR 131 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~g--i~v~viPGiSs~~a~-a~~Gl~l~~ 131 (228)
++|++|++|||++|+++.++++.+++.+ ++++++|||||++++ |++|+||.+
T Consensus 70 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~ 124 (239)
T TIGR01466 70 RTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGH 124 (239)
T ss_pred CCEEEEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCccc
Confidence 8999999999999999999988887764 699999999999975 679999954
No 25
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=99.94 E-value=3.9e-26 Score=199.92 Aligned_cols=189 Identities=22% Similarity=0.261 Sum_probs=134.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhH-hCCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~-~~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+||+||||+++||+||+++|++||+|+|+++.. ... .++.+ .++++.......+++..+.|++.+++
T Consensus 13 ~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~------t~~---ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 83 (287)
T PRK14994 13 QLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRH------TGL---LLQHFAINARLFALHDHNEQQKAETLLAKLQE 83 (287)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcc------hHH---HHhhcCCCCEEEEccCCCHHHHHHHHHHHHHC
Confidence 599999999999999999999999999999998632 112 23322 23454443444577777888888877
Q ss_pred -CcEEEEe-cCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHH
Q 027097 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (228)
Q Consensus 80 -~~Va~l~-~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~ 156 (228)
++||+++ .|||++|+++.++++.+++.|++|++|||+||++++ +++|+|..+| .+..|.+.+.. ....-.+
T Consensus 84 G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f---~f~Gflp~~~~---~r~~~L~ 157 (287)
T PRK14994 84 GQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRF---CYEGFLPAKSK---GRRDALK 157 (287)
T ss_pred CCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcc---eEeEECCCCCc---hHHHHHH
Confidence 8999998 999999999999999999999999999999999865 6799996543 12223322211 1122233
Q ss_pred HhhcCCCeEEEEec-ccCCchhHHh------------hcc-ccccCCCCccCHHHHHHHHHH
Q 027097 157 NRSLGLHTLCLLDI-RVKEPSLESL------------CRG-KKLYEPPRYMTVNIAIEQLLE 204 (228)
Q Consensus 157 ~~~~g~~tlvlld~-~~~~~~~~~l------------~~~-~~~~~~~~~~~~~~a~~~ll~ 204 (228)
.+.....|+|||.. ....+.++.+ +|+ +|.||.-...++.+.++.+.+
T Consensus 158 ~l~~~~~t~V~yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~ 219 (287)
T PRK14994 158 ALEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKE 219 (287)
T ss_pred HHhcCCCeEEEEEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHh
Confidence 44455689999886 4332233322 343 667777677888888887744
No 26
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=193.60 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=104.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+||+|||||++||+||+++|++||+|+++... .+.+..+. ++++...+........+.+++.+++
T Consensus 3 ~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (246)
T PRK05765 3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY-----------LRLISDLLDGKEVIGARMKEEIFRANTAIEKALE 71 (246)
T ss_pred EEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH-----------HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHC
Confidence 58999999999999999999999999999976421 11343333 3444332211111123456666665
Q ss_pred -CcEEEEecCCCCCcccHHHHHHHHHhCCC--cEEEECCCCHHhHH-HHhCCccccCCceeEEecccCC--CCCCChHHH
Q 027097 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGI--QVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET--WRPGSFYEK 153 (228)
Q Consensus 80 -~~Va~l~~GDP~~~~~~~~l~~~~~~~gi--~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~--~~p~~~~~~ 153 (228)
++|++|++|||++|+++.++++.+.++|+ +++|+|||||++++ |++|+||..... +.+.| ..|......
T Consensus 72 g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~-----~~s~~~~~~p~~~~~~ 146 (246)
T PRK05765 72 GNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFV-----VISLSDLLIPREEILH 146 (246)
T ss_pred CCcEEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcE-----EEEcCCCCCChHHHHH
Confidence 89999999999999999999999988876 79999999999975 679999963221 22333 223211110
Q ss_pred HHHHhhcCCCeEEEEec
Q 027097 154 IKRNRSLGLHTLCLLDI 170 (228)
Q Consensus 154 i~~~~~~g~~tlvlld~ 170 (228)
-+..+.....|++|++.
T Consensus 147 ~l~~~~~~~~~ivly~~ 163 (246)
T PRK05765 147 RVTKAAEADFVIVFYNP 163 (246)
T ss_pred HHHHHhcCCeEEEEEcc
Confidence 12233455678888875
No 27
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.94 E-value=2.8e-26 Score=197.71 Aligned_cols=139 Identities=22% Similarity=0.293 Sum_probs=101.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC---CCeeec-----Ch---------
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIALA-----DR--------- 63 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~---~~i~~~-----~~--------- 63 (228)
+||+||+||||||+||+||+++|++||+|++++....- .+...-..+.++.+.. .++... +.
T Consensus 3 kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~-~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 3 RLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADK-DDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred EEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCc-hhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 38999999999999999999999999999998652110 0011111224444432 222211 11
Q ss_pred hhHHHH-----HHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHh---CCCcEEEECCCCHHhHH-HHhCCccccCC
Q 027097 64 EMVEEK-----ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFG 133 (228)
Q Consensus 64 ~~~e~~-----~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~---~gi~v~viPGiSs~~a~-a~~Gl~l~~~~ 133 (228)
..|++. .+.|.+.+.+ ++|++|++|||++|+++.++++.+.+ .|++++|||||||++|+ |++|+||.+.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~ 161 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIG 161 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCC
Confidence 112222 4557777766 89999999999999999999999876 48999999999999976 67999999888
Q ss_pred ceeEEec
Q 027097 134 ETVSIPF 140 (228)
Q Consensus 134 ~~~~v~~ 140 (228)
+++.++.
T Consensus 162 ~~l~ii~ 168 (253)
T PRK08284 162 EPVHITT 168 (253)
T ss_pred ceEEEEe
Confidence 7777764
No 28
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.94 E-value=1.4e-25 Score=208.52 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=114.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC--CCeeec-----Ch-hhHHHHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPIALA-----DR-EMVEEKADK 72 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~--~~i~~~-----~~-~~~e~~~~~ 72 (228)
++|+||+|||||++||+||+++|++||+|+|+.-. +.. +..+.. .+++.. +. ...+++.+.
T Consensus 4 ~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv-------~~~----~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~ 72 (474)
T PRK07168 4 YVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLL-------NPF----FLSYTKQTCELMYCGKMPKNHIMRQEMINAH 72 (474)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcC-------CHH----HHhhcCCCcEEEeccCcCCCccccHHHHHHH
Confidence 38999999999999999999999999999986421 121 111211 122110 00 112334455
Q ss_pred HHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCCh
Q 027097 73 ILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF 150 (228)
Q Consensus 73 i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~ 150 (228)
+.+.+++ ++|++|++|||++|+++.++++.+.+.|++++|||||||++|+ |++|+||++.+.+.++.+.+.|.++...
T Consensus 73 l~~~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~ 152 (474)
T PRK07168 73 LLQFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLT 152 (474)
T ss_pred HHHHHhCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccc
Confidence 6677666 8999999999999999999999999999999999999999976 6799999998888888888888764211
Q ss_pred HHHHHHHhhcCCCeEEEEecc
Q 027097 151 YEKIKRNRSLGLHTLCLLDIR 171 (228)
Q Consensus 151 ~~~i~~~~~~g~~tlvlld~~ 171 (228)
-..-+..+.. ..|+++|...
T Consensus 153 ~~~~~~~l~~-~~tlV~lm~~ 172 (474)
T PRK07168 153 DHGKYNSSHN-SDTIAYYMGI 172 (474)
T ss_pred cchhHHHhcC-CCeEEEEcCh
Confidence 1112333443 3588875543
No 29
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.94 E-value=3.1e-25 Score=191.14 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=86.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCC-CeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~-~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+||+|||||++||++|+++|++||+|++.. .++ +.+....+. .+...+++..++..+.+....+.
T Consensus 4 ~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~--~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 72 (250)
T PRK05991 4 RLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG--PYL---------DRLPLRADQLRHASDNREELDRAGAALAMAAAG 72 (250)
T ss_pred eEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH--HHH---------HhhhccccccccCCCCHHHHHHHHHHHHHHHCC
Confidence 599999999999999999999999999999642 111 122111111 11122333333333333233345
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHh-----CCCcEEEECCCCHHhHH-HHhCCcccc
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKK-----LGIQVKAVHNASVMNAV-GICGLQLYR 131 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~-----~gi~v~viPGiSs~~a~-a~~Gl~l~~ 131 (228)
++|++|++|||++|+++.++.+.+++ .|++++|+|||||++++ |++|+||.+
T Consensus 73 ~~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~ 130 (250)
T PRK05991 73 ANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGH 130 (250)
T ss_pred CeEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCC
Confidence 89999999999999999888888764 46899999999999975 679999964
No 30
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.93 E-value=1.3e-25 Score=193.08 Aligned_cols=139 Identities=22% Similarity=0.288 Sum_probs=100.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh---CCCeeec------Ch--------
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY---GKPIALA------DR-------- 63 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~---~~~i~~~------~~-------- 63 (228)
.||+||+||||||+||+||+++|++||+|+++.....- .+...-+.+.++.+. ++++... +.
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~-~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~ 80 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQK-SDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAV 80 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCc-hhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhH
Confidence 48999999999999999999999999999998542100 000000122444332 1222221 10
Q ss_pred hhHH-----HHHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHh---CCCcEEEECCCCHHhHH-HHhCCccccCC
Q 027097 64 EMVE-----EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFG 133 (228)
Q Consensus 64 ~~~e-----~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~---~gi~v~viPGiSs~~a~-a~~Gl~l~~~~ 133 (228)
..|. +.++.|.+.+++ ++||+|++|||++|+++.++.+.+.+ .+++++|||||||++++ |++|+||++.+
T Consensus 81 ~~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 81 DDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 1112 355667777766 89999999999999999999998876 47899999999999975 67999999887
Q ss_pred ceeEEec
Q 027097 134 ETVSIPF 140 (228)
Q Consensus 134 ~~~~v~~ 140 (228)
+.+.+++
T Consensus 161 ~~l~v~~ 167 (249)
T TIGR02434 161 EPVQITT 167 (249)
T ss_pred ceEEEEe
Confidence 7776654
No 31
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.93 E-value=1.3e-24 Score=181.86 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=102.8
Q ss_pred EEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCC-CeeecChhhHHHHHHHHHHHcCCCcE
Q 027097 4 IIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQESNV 82 (228)
Q Consensus 4 iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~-~i~~~~~~~~e~~~~~i~~~a~~~~V 82 (228)
|||+|||||++||+||+++|++||+|+++.. .++.+..+.++ .........+++..+.+.+.+..++|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~v 69 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGER-----------HLELLAELIGEKREIILTYKDLDELLEFIAATRKEKRV 69 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEechh-----------hHHHHhhhcCCceEeccCcCCHHHHHHHHHHhcCCCCE
Confidence 6999999999999999999999999997532 22244444333 22221223467777777766556899
Q ss_pred EEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHH-HHhCCccccCCceeEEecccCCCCCCChHHHHHHHhhcC
Q 027097 83 AFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLG 161 (228)
Q Consensus 83 a~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~-a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~~g 161 (228)
+++++|||++|+++.++.+.+.+ .+++++|||||++++ |++|+||.++ .+.+.|.++.... ....+..+
T Consensus 70 v~l~~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~------~~is~~~~~~~~~--~~~~l~~~ 139 (204)
T TIGR02467 70 VVLASGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDA------VVISLHGRELDEL--LLALLRGH 139 (204)
T ss_pred EEEecCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhC------eEEEeeCCCCcHH--HHHHHhcC
Confidence 99999999999999888877754 479999999999975 6799999743 2234455542211 33455555
Q ss_pred CCeEEEEec
Q 027097 162 LHTLCLLDI 170 (228)
Q Consensus 162 ~~tlvlld~ 170 (228)
..+++|++.
T Consensus 140 ~~~vvl~~~ 148 (204)
T TIGR02467 140 RKVAVLTDP 148 (204)
T ss_pred CcEEEEeCC
Confidence 556666554
No 32
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=159.11 Aligned_cols=187 Identities=26% Similarity=0.295 Sum_probs=140.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhH-hCCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~-~~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
+||+|++..||.++||.||+++|++||+|+|++.... .. .+..+ +..++...+..+.++....+++.+++
T Consensus 6 ~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t------~~---LL~~~~I~~~~is~h~hne~~~~~~li~~l~~ 76 (275)
T COG0313 6 TLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVT------RK---LLSHLGIKTPLISYHEHNEKEKLPKLIPLLKK 76 (275)
T ss_pred eEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHH------HH---HHHHhCCCCceecccCCcHHHHHHHHHHHHhc
Confidence 4999999999999999999999999999999986311 11 44444 23444333334445566778888877
Q ss_pred -CcEEEEe-cCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh-HHHHhCCccccCCceeEEecccCCCCCCCh--HHHH
Q 027097 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN-AVGICGLQLYRFGETVSIPFFTETWRPGSF--YEKI 154 (228)
Q Consensus 80 -~~Va~l~-~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~-a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~--~~~i 154 (228)
++|++++ .|.|++++++..|++++++.||+|+++||+||+. |++++|+|..+|- ...|. |... ....
T Consensus 77 g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~---F~GFL-----P~k~~~R~~~ 148 (275)
T COG0313 77 GKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFL---FEGFL-----PRKSKERRKR 148 (275)
T ss_pred CCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCee---EeccC-----CCCccHHHHH
Confidence 6999999 9999999999999999999999999999999976 6789999998651 22333 3322 2233
Q ss_pred HHHhhcCCCeEEEEecccCC-------------chhHHhhcc-ccccCCCCccCHHHHHHHHHH
Q 027097 155 KRNRSLGLHTLCLLDIRVKE-------------PSLESLCRG-KKLYEPPRYMTVNIAIEQLLE 204 (228)
Q Consensus 155 ~~~~~~g~~tlvlld~~~~~-------------~~~~~l~~~-~~~~~~~~~~~~~~a~~~ll~ 204 (228)
.+.+.....|++|++.-..- .+...++|+ +|.||.-+..++.|.++.+-+
T Consensus 149 l~~l~~~~~t~IfyEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~ 212 (275)
T COG0313 149 LEALANEPRTLIFYESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEE 212 (275)
T ss_pred HHHHHhcCCeEEEEecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhh
Confidence 45556666789998876531 122335677 899998888899999988877
No 33
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.82 E-value=1.5e-19 Score=157.40 Aligned_cols=189 Identities=20% Similarity=0.159 Sum_probs=137.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhH-hCCCeeecChhhHHHHHHHHHHHcCC
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE 79 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~-~~~~i~~~~~~~~e~~~~~i~~~a~~ 79 (228)
|||+|++..||.++||+||+++|++||+|+|+++... .. .+..+ +.++....+.....+....+++..++
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t------~k---LL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~ 71 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTS------KL---LLHLGIIATPKAFHIDNEFQEKQNLLAAKLEI 71 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhH------HH---HHHhcCCCCceEEEecccHhHHHHHHHHHHHc
Confidence 8999999999999999999999999999999986321 11 33322 23444433333444455666676666
Q ss_pred -CcEEEEe-cCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhH-HHHhCCccccCCceeEEecccCCCCCCChHHHHHH
Q 027097 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA-VGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (228)
Q Consensus 80 -~~Va~l~-~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a-~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~ 156 (228)
++|++++ .|.|++.+++..+++.+.+.|++|.++||.|++.+ ++++|++...| ....|+... ..-...+.+
T Consensus 72 g~~valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f---~F~GFlp~k---~~~r~~~l~ 145 (276)
T TIGR00096 72 GNNIAVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRF---FFGGFLPKK---SKRRQALKA 145 (276)
T ss_pred CCcEEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCce---EEeeeCCCC---hHHHHHHHH
Confidence 8899999 99999999999999999999999999999999985 57899987654 122222211 112345566
Q ss_pred HhhcCCCeEEEEecccCCc------------hhHHhhcc-ccccCCCCccCHHHHHHHHHH
Q 027097 157 NRSLGLHTLCLLDIRVKEP------------SLESLCRG-KKLYEPPRYMTVNIAIEQLLE 204 (228)
Q Consensus 157 ~~~~g~~tlvlld~~~~~~------------~~~~l~~~-~~~~~~~~~~~~~~a~~~ll~ 204 (228)
.+....+|++|++.-..-. +.-.++|+ +|.||.-.+.++.++++.+.+
T Consensus 146 ~l~~~~~t~ifyEsp~Rl~~~L~~l~~~~g~r~i~~arELTK~~E~~~~g~~~e~~~~~~~ 206 (276)
T TIGR00096 146 YIAEERTTVFFYESHHRLLTTLTDLNVFLGSERFVGAAELTKKESEYWFGTVGQLLPDITE 206 (276)
T ss_pred HHhCCCCeEEEEECcHhHHHHHHHHHHhcCCceEEEEEecCCCceEEEeCCHHHHHHHHHh
Confidence 6777788999988765321 11223666 888888888999999888754
No 34
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.82 E-value=1.1e-19 Score=159.60 Aligned_cols=136 Identities=19% Similarity=0.270 Sum_probs=108.3
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh-CCCeee------cChhhHHHHHHHHH
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIAL------ADREMVEEKADKIL 74 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~-~~~i~~------~~~~~~e~~~~~i~ 74 (228)
+|+||.|||+|++||++|+++|++||+++++.-. ... .++-.. +.+..+ ......++..+..+
T Consensus 258 i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLV-------p~a---vL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l 327 (506)
T KOG1527|consen 258 IYLVGSGPGSPELLTLKAVRVIQSADLLLADKLV-------PNA---VLELIPPDTRLFIAGKFPGNASRAQEELHELLL 327 (506)
T ss_pred EEEEccCCCChhheeHHHHHHHhhcceehhhhcc-------cHH---HHhhcCCCCceEEeecCCCchhHHHHHHHHHHH
Confidence 7999999999999999999999999999987532 222 333222 222221 11223555666667
Q ss_pred HHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHH-HhCCccccCCceeEEecccCCCCC
Q 027097 75 SESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVG-ICGLQLYRFGETVSIPFFTETWRP 147 (228)
Q Consensus 75 ~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a-~~Gl~l~~~~~~~~v~~~~~~~~p 147 (228)
+.+.+ -.|++|..|||++|+++.+.+..+++.|+...|||||||..+++ .+|+|.++.|..-.+.+.+++++.
T Consensus 328 ~~l~~G~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrK 402 (506)
T KOG1527|consen 328 NFLEAGATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRK 402 (506)
T ss_pred HHHhCCCEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCC
Confidence 77766 68999999999999999999999999999999999999988764 699999999999999999988874
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.25 E-value=5.1e-11 Score=104.92 Aligned_cols=119 Identities=24% Similarity=0.420 Sum_probs=89.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh--CCCeeecC---------hhhHHHH
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY--GKPIALAD---------REMVEEK 69 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~--~~~i~~~~---------~~~~e~~ 69 (228)
|+.+||+|+|+.+.||+.-.++|+++|.+|+.+..- . .++.+. +..+.+.| ...|+.+
T Consensus 4 ~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdH--------P---viE~l~~e~~~f~~fD~iYE~heqFe~VYd~I 72 (488)
T COG3956 4 TITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDH--------P---VIEELDEEGIKFSFFDDIYETHEQFEAVYDFI 72 (488)
T ss_pred eEEEEeeCCCchhhcchHHHHHHhccceEEEecCCC--------c---hHHHHHhhcceeeehhHHHhhhhhHHHHHHHH
Confidence 689999999999999999999999999999765421 1 233222 22233221 2336677
Q ss_pred HHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHH-HhCCCcEEEECCCCHHhHH-HHhCCccc
Q 027097 70 ADKILSESQESNVAFLVVGDPFGATTHTDLVVRA-KKLGIQVKAVHNASVMNAV-GICGLQLY 130 (228)
Q Consensus 70 ~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~-~~~gi~v~viPGiSs~~a~-a~~Gl~l~ 130 (228)
++.+++.|++|++++.+||+|+++.+...++.++ .+.++.|.|.||.|.+.++ .++.+...
T Consensus 73 ~~~LveaAkekdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPv 135 (488)
T COG3956 73 AADLVEAAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPV 135 (488)
T ss_pred HHHHHHhhcccceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcc
Confidence 8888888888999999999999997776766654 5578999999999999875 45444433
No 36
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=24 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=19.6
Q ss_pred EEEecCCCCcchhhHHHHHHHHhCCEEE-EeCc
Q 027097 3 YIIGLGLGDERDITLRGLEAVKKCDKVY-IEAY 34 (228)
Q Consensus 3 ~iVG~GpG~~~~lT~~A~~~L~~aDvV~-~~~~ 34 (228)
+++| |-+| .-+.+|+++|++||+|+ .|+.
T Consensus 170 ~~~~--~~~~-~a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 170 RLEG--PEKP-SAAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred EEec--CCCC-CCCHHHHHHHHhCCEEEEcCCc
Confidence 4444 4343 57889999999999554 4444
No 37
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=75.09 E-value=3 Score=35.57 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=38.4
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcc-cccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCC
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYT-SLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~-s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~ 80 (228)
+++||.||+-.+.++. -++++++++++. +. .++.-.-..++..| ++...+.+.+...++
T Consensus 55 v~vvG~gP~l~e~~~~------~~~~~vi~AdgA~~~-----------l~~~gi~pDiiVTD---lDgd~e~~~~~~~~g 114 (232)
T COG1634 55 VAVVGAGPSLEEEIKG------LSSEVVIAADGAVSA-----------LLERGIRPDIIVTD---LDGDPEDLLSCTAKG 114 (232)
T ss_pred EEEECCCCcHhhhhcc------cccceEEeccHHHHH-----------HHHcCCCCcEEEec---CCCCHHHHHHhhccC
Confidence 6899999987776665 568888877652 11 11111123444432 222233444544456
Q ss_pred cEEEEe-cCC
Q 027097 81 NVAFLV-VGD 89 (228)
Q Consensus 81 ~Va~l~-~GD 89 (228)
.+.++. .||
T Consensus 115 ~i~VVHAHGD 124 (232)
T COG1634 115 SIVVVHAHGD 124 (232)
T ss_pred CEEEEEecCc
Confidence 666665 898
No 38
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=70.94 E-value=36 Score=31.17 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCC-CcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCC
Q 027097 68 EKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWR 146 (228)
Q Consensus 68 ~~~~~i~~~a~~~~Va~l~~GDP~-~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~ 146 (228)
+..+.+++.+...+|.+.+-||-+ +-++..+ +.+++..|-+|+++= |.+.|+..+.-.- .-.++|+.-++.
T Consensus 76 ~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~S-L~~ara~GadVriVY--SpldAl~iA~~nP-----dk~VVF~avGFE 147 (369)
T TIGR00075 76 ERIDEAIELATIPEIIFCTFGDMMRVPGSGGS-LLQARAEGADVRIVY--SPMDALKIAKENP-----DRKVVFFAIGFE 147 (369)
T ss_pred HHHHHHHHHhCCCCeEEEecchhccCCCCCCC-HHHHHhCCCCEEEEe--CHHHHHHHHHHCC-----CCeEEEEecCch
Confidence 345677788777899999999965 3344434 356788999999985 4455553211111 124666666665
Q ss_pred CCChH--HHHHHHhhcCCCeEEEE
Q 027097 147 PGSFY--EKIKRNRSLGLHTLCLL 168 (228)
Q Consensus 147 p~~~~--~~i~~~~~~g~~tlvll 168 (228)
.+.|. ..+.+....+..-+.++
T Consensus 148 TTaP~~A~~i~~a~~~~~~Nfsvl 171 (369)
T TIGR00075 148 TTAPTTASTLLSAKAEDINNFFFL 171 (369)
T ss_pred hccHHHHHHHHHHHHcCCCcEEEE
Confidence 44432 24555555555544443
No 39
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=66.14 E-value=27 Score=28.07 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCH
Q 027097 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (228)
Q Consensus 66 ~e~~~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs 118 (228)
.++..+.+.+....-+.+.++.|+|+++.....+++.+++.|+.+.+..+-+-
T Consensus 49 ~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 49 VEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45555555443222234567799999987777888888888988888866653
No 40
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=65.49 E-value=57 Score=29.88 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCC-CcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCC
Q 027097 68 EKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWR 146 (228)
Q Consensus 68 ~~~~~i~~~a~~~~Va~l~~GDP~-~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~ 146 (228)
+..+.+++.+.+.+|.+.+-||-+ +-++..+| ..++.+|-+|+++= |.+.|+..+.-. ..-.++|+.-++.
T Consensus 70 ~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~SL-~~ara~GadVriVY--SpldAl~iA~~n-----P~k~vVF~avGFE 141 (364)
T PRK15062 70 GRIDAAIELASRPGVILCTFGDMLRVPGSKGSL-LEAKAEGADVRIVY--SPLDALKIAREN-----PDKEVVFFAIGFE 141 (364)
T ss_pred HHHHHHHHHhCCCCeEEEeccccccCCCCcCCH-HHHHhCCCCEEEEe--CHHHHHHHHHHC-----CCCeEEEEecCch
Confidence 345677788877899999999975 33444344 56788899999985 345554321111 1124666666665
Q ss_pred CCChH--HHHHHHhhcCCCeEEEEe
Q 027097 147 PGSFY--EKIKRNRSLGLHTLCLLD 169 (228)
Q Consensus 147 p~~~~--~~i~~~~~~g~~tlvlld 169 (228)
.+.|. -.|.+..+.+..-+.+|-
T Consensus 142 TTaP~~A~~i~~A~~~~~~Nfsvl~ 166 (364)
T PRK15062 142 TTAPATAATLLQAKAEGLKNFSVLS 166 (364)
T ss_pred hccHHHHHHHHHHHHcCCCCEEEEE
Confidence 44432 244454455555444433
No 41
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=59.12 E-value=36 Score=28.96 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhH
Q 027097 66 VEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 121 (228)
Q Consensus 66 ~e~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a 121 (228)
.++..+.+.+.... ..-+.++.|.|++..-...+++.+++.|+++.+..+-+-...
T Consensus 58 ~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 58 AEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 34455555443322 345788899999987677888889999999999888876553
No 42
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=1.6e+02 Score=27.73 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=65.4
Q ss_pred EEEEecCCCCCcccH--HHHHHHHHhCCCcEEEECCCCHHh-H-H-H-HhCCccccCCceeEEecccCCCCCCChHHHHH
Q 027097 82 VAFLVVGDPFGATTH--TDLVVRAKKLGIQVKAVHNASVMN-A-V-G-ICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (228)
Q Consensus 82 Va~l~~GDP~~~~~~--~~l~~~~~~~gi~v~viPGiSs~~-a-~-a-~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~ 155 (228)
-++|..|||.+--+. ..+...+.+++ ++=.+-|==|.+ - + | ++|++..+ +.+ + +++-.+.|.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~----l~l-~------aEt~~e~I~ 161 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNN----LYL-L------AETNLEDII 161 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccc----eEE-e------hhcCHHHHH
Confidence 477889999997332 12222345566 899999997765 2 3 4 68877743 112 1 233377888
Q ss_pred HHhhcCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhC
Q 027097 156 RNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQG 210 (228)
Q Consensus 156 ~~~~~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~ 210 (228)
+.+..--..++..|.-+- +.-....-.|+---++.++...|..+.|..+
T Consensus 162 ~~l~~~~p~lvVIDSIQT------~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~ 210 (456)
T COG1066 162 AELEQEKPDLVVIDSIQT------LYSEEITSAPGSVSQVREVAAELMRLAKTKN 210 (456)
T ss_pred HHHHhcCCCEEEEeccce------eecccccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 888777777887775431 1111111112222246677788888887643
No 43
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=56.68 E-value=11 Score=30.57 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=33.4
Q ss_pred ecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeee
Q 027097 6 GLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (228)
Q Consensus 6 G~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~ 60 (228)
++=|.+++.|...-.++++++|+|+.-+.++.-..+...+ .+....++++..
T Consensus 39 ~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~e---a~~~~~~~~l~~ 90 (170)
T cd00885 39 TVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTRE---AVAKAFGRPLVL 90 (170)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHH---HHHHHhCCCccc
Confidence 3346788888877778888999999776543211112233 566666777765
No 44
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=56.11 E-value=36 Score=31.84 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCC--CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 66 VEEKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 66 ~e~~~~~i~~~a~~--~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
.++...+|.+.+++ =+.|+|++..|..--.+..+.+++.+.||++..+-.+..++
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 44556667777665 48999999999888888888888999999999988777665
No 45
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=56.09 E-value=38 Score=28.41 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCH
Q 027097 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (228)
Q Consensus 66 ~e~~~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs 118 (228)
.+++.+.+.+......-+.++.|+|+...-...++..++++|+++.+--+=|.
T Consensus 58 ~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 58 ADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred HHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCc
Confidence 45555555443223335778899998776667899999999999988875554
No 46
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=54.40 E-value=82 Score=25.60 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEE
Q 027097 68 EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 113 (228)
Q Consensus 68 ~~~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~vi 113 (228)
...+.+++.+.+++.-++.-|--.-.+....+++.+++.|+.++++
T Consensus 80 ~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 80 RLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEE
Confidence 3455566665443333333331111123333777889899888765
No 47
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=54.30 E-value=73 Score=26.18 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred HHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeee
Q 027097 18 RGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (228)
Q Consensus 18 ~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~ 60 (228)
+-++-++.+|+|. .. +..+++++.|+|+++.
T Consensus 58 ~l~~~lks~d~v~--ev----------~i~~sle~iyGKRvIi 88 (218)
T COG1707 58 KLLERLKSFDYVI--EV----------EIHRSLEEIYGKRVII 88 (218)
T ss_pred HHHHHhhccceEE--Ee----------eecchHHHHhCcEEEE
Confidence 4467788999887 21 2222677777776553
No 48
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=51.25 E-value=1.2e+02 Score=23.93 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCcEEEECCCCHHhH-HHHhCCccccCCceeEEecccCCCCCCChHHHHHHHhhcCCCeEEEEecccCCchhHHhhc--c
Q 027097 107 GIQVKAVHNASVMNA-VGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCR--G 183 (228)
Q Consensus 107 gi~v~viPGiSs~~a-~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~~g~~tlvlld~~~~~~~~~~l~~--~ 183 (228)
.+=|-|=||++.-.| +..-|-.+ .+. ..+..+.-+.|..-...|-..++-.|...-....+.+.+ +
T Consensus 32 ~lIVGiDPG~ttgiAildL~G~~l-------~l~----S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~ 100 (138)
T PF04312_consen 32 YLIVGIDPGTTTGIAILDLDGELL-------DLK----SSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFN 100 (138)
T ss_pred CEEEEECCCceeEEEEEecCCcEE-------EEE----eecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhC
Confidence 345667788876433 23333222 221 122334466777788889888888999988778888888 5
Q ss_pred ccccCCCCccCHHHHHHHHHHHHH
Q 027097 184 KKLYEPPRYMTVNIAIEQLLEVEL 207 (228)
Q Consensus 184 ~~~~~~~~~~~~~~a~~~ll~~~~ 207 (228)
...|.|.+-|++.|=.++..++..
T Consensus 101 A~ly~P~~dlsveeK~~l~~~~~~ 124 (138)
T PF04312_consen 101 AVLYTPERDLSVEEKQELAREYSE 124 (138)
T ss_pred CcccCCCCcCCHHHHHHHHHhhCC
Confidence 889999999999999888887654
No 49
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=51.24 E-value=81 Score=28.79 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=43.5
Q ss_pred CCEEEEeCcccccccCCCcchhhHHhhH-hCCCeeecChhhHHHHHHHHHHHcCC-CcEEEEecCCCCCccc--HHHHHH
Q 027097 26 CDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE-SNVAFLVVGDPFGATT--HTDLVV 101 (228)
Q Consensus 26 aDvV~~~~~~s~l~~~~~~~~~~~l~~~-~~~~i~~~~~~~~e~~~~~i~~~a~~-~~Va~l~~GDP~~~~~--~~~l~~ 101 (228)
--+|+++|.. +.+ +|+++ +...++....+..-..++.|++. + ++|++++ ||--.+. +..+.+
T Consensus 24 ~~~ilveg~~-------d~~---~l~~lgi~g~~i~~s~~p~~~cad~ii~~--gi~rVVi~~--D~d~~G~~~~~~~~~ 89 (360)
T PRK14719 24 GIPILVEGPN-------DIL---SLKNLKINANFITVSNTPVFQIADDLIAE--NISEVILLT--DFDRAGRVYAKNIME 89 (360)
T ss_pred CCEEEEEcch-------HHH---HHHHcCCCCcEEEEeCCchHHHHHHHHHc--CCCEEEEEE--CCCCCCCccchHHHH
Confidence 3578888742 233 66665 33344443444444466666542 4 7899988 8765543 235677
Q ss_pred HHHhCCCcEE
Q 027097 102 RAKKLGIQVK 111 (228)
Q Consensus 102 ~~~~~gi~v~ 111 (228)
.+++.|++|.
T Consensus 90 ~L~~aGi~V~ 99 (360)
T PRK14719 90 EFQSRGIKVN 99 (360)
T ss_pred HHHHCCCEEE
Confidence 8899999883
No 50
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=49.83 E-value=51 Score=30.82 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCC--CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 66 VEEKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 66 ~e~~~~~i~~~a~~--~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
.++...+|.+.+++ =+.|+|++..|..--.+..+.+++.+.||++..+-.+..++
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis 377 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHh
Confidence 34556667777665 48899999999888888888888999999999988877665
No 51
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=45.71 E-value=34 Score=25.98 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=33.7
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVG 123 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a 123 (228)
|++.+..+|-...+- ...+++++++.|+++.++---++...+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 578889999887777 5588899999999999998888776554
No 52
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=45.06 E-value=46 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=31.5
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~ 119 (228)
+.+++=..|.|+++.-..++++.+++.|+.+-+.-+-+..
T Consensus 131 ~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 131 KHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred CEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4566665899999987778888999999999887655543
No 53
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=44.33 E-value=87 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCC-CcEEEEecC-CCCCcccHHHHHHHHHhCCCcEEEE-CCCCHH
Q 027097 68 EKADKILSESQE-SNVAFLVVG-DPFGATTHTDLVVRAKKLGIQVKAV-HNASVM 119 (228)
Q Consensus 68 ~~~~~i~~~a~~-~~Va~l~~G-DP~~~~~~~~l~~~~~~~gi~v~vi-PGiSs~ 119 (228)
+..+.+.+.+++ +.++++..| ||.+++.-.-+.+.+--.|..+... ||+|--
T Consensus 99 ~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~g 153 (324)
T TIGR01921 99 RHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQG 153 (324)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCch
Confidence 344555555665 789998866 9998887654544444455554433 777754
No 54
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=43.89 E-value=49 Score=24.91 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=24.9
Q ss_pred HHHHHHHHcCC--CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEEC
Q 027097 69 KADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (228)
Q Consensus 69 ~~~~i~~~a~~--~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viP 114 (228)
++..+.+.+.+ -+.++|.+|| +-...+++.+++.|.+|.++-
T Consensus 83 l~~d~~~~~~~~~~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 83 LAVDILELAYENPPDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHG--GG-SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHhhccCCCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 33445555533 4899999999 345677888889999999886
No 55
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.67 E-value=1.8e+02 Score=26.39 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCcEEEEecCCCC-CcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCC
Q 027097 69 KADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRP 147 (228)
Q Consensus 69 ~~~~i~~~a~~~~Va~l~~GDP~-~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p 147 (228)
..+..++.+..+++.+.+-||-+ +-++..+|+ .+++.|.+|+++=.+.-.-.+|.-. .. -.++|..-++.+
T Consensus 73 ~id~aiela~~~~~i~~TfGDm~RVPgs~~SL~-~~ka~G~DVRiVYS~~dal~iA~en--pd-----k~VVffaiGFET 144 (364)
T COG0409 73 RIDTAIELASSKDVIFCTFGDMMRVPGSPGSLL-DAKAEGADVRIVYSPMDALKIAKEN--PD-----KKVVFFAIGFET 144 (364)
T ss_pred HHHHHHHHhCCCCcEEEeccceeecCCCCcchh-hhhcCCccEEEEecHHHHHHHHhhC--CC-----CceEEEeCcccc
Confidence 45666777767899999999964 333433443 4678899999986554333334322 11 134555555544
Q ss_pred CChHH--HHHHHhhcCCCeEEEEecc
Q 027097 148 GSFYE--KIKRNRSLGLHTLCLLDIR 171 (228)
Q Consensus 148 ~~~~~--~i~~~~~~g~~tlvlld~~ 171 (228)
+.|.. .|.+....|..-+-++...
T Consensus 145 T~P~TA~~l~~~~~e~i~Nf~~ls~H 170 (364)
T COG0409 145 TTPTTACMLLSAKGEGIENFFVLSNH 170 (364)
T ss_pred CCCchHHHHHhccccccceEEEEEec
Confidence 43332 3445555555544444443
No 56
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.37 E-value=82 Score=24.03 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=30.2
Q ss_pred HHHHHHcCC--CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCC
Q 027097 71 DKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 116 (228)
Q Consensus 71 ~~i~~~a~~--~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGi 116 (228)
-.+.+.+.. -++++|++||- -...+++.+++.|.+|.++.--
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 344455544 47899999996 4556778888999999887544
No 57
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=41.06 E-value=71 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCC--CcEEEEecCCCCC---cccHHHHHHHHHhCCC-cEEEECCCCHH
Q 027097 68 EKADKILSESQE--SNVAFLVVGDPFG---ATTHTDLVVRAKKLGI-QVKAVHNASVM 119 (228)
Q Consensus 68 ~~~~~i~~~a~~--~~Va~l~~GDP~~---~~~~~~l~~~~~~~gi-~v~viPGiSs~ 119 (228)
+..+++++.+.+ ..-+.+..|+|++ +....++++.+++.+. .+.+.-..+..
T Consensus 39 ~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~ 96 (139)
T PF13353_consen 39 EIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTL 96 (139)
T ss_dssp HHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--H
T ss_pred hhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCch
Confidence 344555555543 3455567899999 6667777888888776 44544444443
No 58
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=38.40 E-value=2.2e+02 Score=25.44 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=44.6
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCC--
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE-- 79 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~-- 79 (228)
+.|+|+|| -.+++..+.+..-.+.+|+.+.. .+-++..+.+.+........+. .....+.+.-..
T Consensus 172 V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~~---------~~Rl~~A~~~~g~~~~~~~~~~--~~~~~~~~~t~g~g 238 (350)
T COG1063 172 VVVVGAGP--IGLLAIALAKLLGASVVIVVDRS---------PERLELAKEAGGADVVVNPSED--DAGAEILELTGGRG 238 (350)
T ss_pred EEEECCCH--HHHHHHHHHHHcCCceEEEeCCC---------HHHHHHHHHhCCCeEeecCccc--cHHHHHHHHhCCCC
Confidence 56888888 67999999999988998887543 2211122232344443322221 222333333322
Q ss_pred CcEEEEecCCC
Q 027097 80 SNVAFLVVGDP 90 (228)
Q Consensus 80 ~~Va~l~~GDP 90 (228)
-++++-++|.|
T Consensus 239 ~D~vie~~G~~ 249 (350)
T COG1063 239 ADVVIEAVGSP 249 (350)
T ss_pred CCEEEECCCCH
Confidence 48999999955
No 59
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=38.28 E-value=1.7e+02 Score=24.87 Aligned_cols=61 Identities=18% Similarity=0.381 Sum_probs=37.1
Q ss_pred EEecCCC--CcchhhHHHHHHHH--hCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHH
Q 027097 4 IIGLGLG--DERDITLRGLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADK 72 (228)
Q Consensus 4 iVG~GpG--~~~~lT~~A~~~L~--~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~ 72 (228)
++-+-|. +.+.+...| +.|+ .||+|+.+. .|...++.+.+++..++++... |....+.+.+
T Consensus 154 ~a~asPy~~~~~~l~~Aa-~~L~~~gadlIvLDC------mGYt~~~r~~~~~~~g~PVlLs-r~lvAr~~~E 218 (221)
T PF07302_consen 154 VAAASPYEGDEEELAAAA-RELAEQGADLIVLDC------MGYTQEMRDIVQRALGKPVLLS-RTLVARLAAE 218 (221)
T ss_pred EEEeCCCCCCHHHHHHHH-HHHHhcCCCEEEEEC------CCCCHHHHHHHHHHhCCCEEeH-HHHHHHHHHH
Confidence 3334444 555555444 5555 999999874 4555666668887788888763 4444443333
No 60
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.01 E-value=1.6e+02 Score=21.49 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=50.1
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCCCChHHHHHHHhh
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~~~~i~~~~~ 159 (228)
++|.+...|. .+....++...+...|..+..+++......... ..+ +...+++.+..+.+....+.+.....
T Consensus 14 ~~i~i~g~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~i~iS~~g~~~~~~~~~~~a~~ 85 (139)
T cd05013 14 RRIYIFGVGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAA-NLT-----PGDVVIAISFSGETKETVEAAEIAKE 85 (139)
T ss_pred CEEEEEEcCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHH-cCC-----CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7788888885 334555566667777888888877654433221 111 11134444555544344555666666
Q ss_pred cCCCeEEEEeccc
Q 027097 160 LGLHTLCLLDIRV 172 (228)
Q Consensus 160 ~g~~tlvlld~~~ 172 (228)
+|..++++.+...
T Consensus 86 ~g~~iv~iT~~~~ 98 (139)
T cd05013 86 RGAKVIAITDSAN 98 (139)
T ss_pred cCCeEEEEcCCCC
Confidence 7878878877653
No 61
>PRK01215 competence damage-inducible protein A; Provisional
Probab=35.47 E-value=1.9e+02 Score=25.16 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=33.3
Q ss_pred EecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeee
Q 027097 5 IGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (228)
Q Consensus 5 VG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~ 60 (228)
+++=|.|++.|...-.++++++|+|+.-+..+.-..++..+ .+.++.++++.+
T Consensus 42 ~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t~e---aia~~~g~~l~~ 94 (264)
T PRK01215 42 ITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKTNE---GFAKALGVELEL 94 (264)
T ss_pred EEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhHHH---HHHHHhCCCCCC
Confidence 33446788888888788888999999776543211111222 555556777665
No 62
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.48 E-value=2.3e+02 Score=22.56 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=28.5
Q ss_pred HhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCC--CcEEEEecCCCC
Q 027097 24 KKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE--SNVAFLVVGDPF 91 (228)
Q Consensus 24 ~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~--~~Va~l~~GDP~ 91 (228)
+.+|+|+..|.+.. .+++..+.+++......+ +..+.+ ..+++ ++++++...+.+
T Consensus 33 ~g~dViIsRG~ta~-----------~lr~~~~iPVV~I~~s~~-Dil~al-~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 33 EGADVIISRGGTAE-----------LLRKHVSIPVVEIPISGF-DILRAL-AKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp TT-SEEEEEHHHHH-----------HHHCC-SS-EEEE---HH-HHHHHH-HHCCCCTSEEEEEEESS-S
T ss_pred cCCeEEEECCHHHH-----------HHHHhCCCCEEEECCCHh-HHHHHH-HHHHhcCCcEEEEeccccc
Confidence 67899997765432 455555556554322222 233333 44544 689999887655
No 63
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=33.96 E-value=64 Score=30.91 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh--CCCeeecChhhHHHHHHHHHHHcCCCcEEEEecCCCCCcccH
Q 027097 19 GLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY--GKPIALADREMVEEKADKILSESQESNVAFLVVGDPFGATTH 96 (228)
Q Consensus 19 A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~--~~~i~~~~~~~~e~~~~~i~~~a~~~~Va~l~~GDP~~~~~~ 96 (228)
|..++++||+-+.+-.+|+|+..-.-.+.+.++.+. ++.+.... +++. +++.+ .+++-+..|+|.+|+..
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVE-HDLa-----vLD~l--sD~vhI~YG~pg~YGvv 296 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE-HDLA-----VLDYL--SDFVHILYGEPGVYGVV 296 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEe-chHH-----HHHHh--hheeEEEecCCccceEe
Confidence 567899999999988888873110111122444443 23333322 2221 33333 25777889999999743
No 64
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.68 E-value=2.5e+02 Score=23.96 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhC--CEEEEeCccccc--ccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCCCcEEEEecCCC
Q 027097 15 ITLRGLEAVKKC--DKVYIEAYTSLL--SFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQESNVAFLVVGDP 90 (228)
Q Consensus 15 lT~~A~~~L~~a--DvV~~~~~~s~l--~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~~~Va~l~~GDP 90 (228)
.|.+|...|..+ |+|.|...+..+ +.|.+.+....++...+.+++-.....+ +.+..+..++|+++. |
T Consensus 55 ~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv-----~aL~al~a~ri~vlT---P 126 (238)
T COG3473 55 YTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVV-----EALNALGAQRISVLT---P 126 (238)
T ss_pred HHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHH-----HHHHhhCcceEEEec---c
Confidence 456666666655 888886654333 3334444222333222223322111111 122333347888886 5
Q ss_pred CCcccHHHHHHHHHhCCCcEEEE
Q 027097 91 FGATTHTDLVVRAKKLGIQVKAV 113 (228)
Q Consensus 91 ~~~~~~~~l~~~~~~~gi~v~vi 113 (228)
++-.......+.+.++|+++.=+
T Consensus 127 Y~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 127 YIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred chhhhhhHHHHHHHhCCeEEEEe
Confidence 66556666667788888876543
No 65
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.06 E-value=3.4e+02 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEE---CCCCHHh
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV---HNASVMN 120 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~vi---PGiSs~~ 120 (228)
+-+.+++..||-...=.....+.+++-|++++.+ +.+|--.
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~e 76 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESE 76 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 3455566777732222223445577889999998 6665443
No 66
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.06 E-value=1.5e+02 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.9
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEEC
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viP 114 (228)
=+..+|++||- -+..|+.++++.|..|.++-
T Consensus 106 iD~~vLvSgD~----DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 106 IDAVALVTRDA----DFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCEEEEEeccH----hHHHHHHHHHHCCCEEEEEe
Confidence 47888999994 56678899999999998876
No 67
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=33.03 E-value=1.4e+02 Score=24.29 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=33.1
Q ss_pred HHHHHcC--CCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 72 KILSESQ--ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 72 ~i~~~a~--~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
.+.+.+. .-+.+++++||- -...+++.++++|..+.+++....++
T Consensus 101 D~~~l~~~~~~D~ivl~SgD~----DF~p~v~~~~~~G~rv~v~~~~~~~s 147 (181)
T COG1432 101 DAMELADKKNVDTIVLFSGDG----DFIPLVEAARDKGKRVEVAGIEPMTS 147 (181)
T ss_pred HHHHhhcccCCCEEEEEcCCc----cHHHHHHHHHHcCCEEEEEecCCcCH
Confidence 3445554 368899999995 34456788899999999998887544
No 68
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=32.98 E-value=35 Score=29.82 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=32.6
Q ss_pred CCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCH
Q 027097 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (228)
Q Consensus 78 ~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs 118 (228)
..++++++..|=-.-.-.|.-.++.+.+.|+++..+-|.|+
T Consensus 7 ~g~~igLVL~GGGaRG~ahiGVL~aLeE~gi~~d~v~GtSa 47 (269)
T cd07227 7 CGQAIGLVLGGGGARGISHIGILQALEEAGIPIDAIGGTSI 47 (269)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHHHHHcCCCccEEEEECH
Confidence 45789998877654334566688889999999999999997
No 69
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=32.52 E-value=62 Score=29.51 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCC-CcccHHHHHHHHHhCCCcEEEECCCCHHhHH--HHhCCccccCCceeEEecccCC
Q 027097 68 EKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHNASVMNAV--GICGLQLYRFGETVSIPFFTET 144 (228)
Q Consensus 68 ~~~~~i~~~a~~~~Va~l~~GDP~-~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~--a~~Gl~l~~~~~~~~v~~~~~~ 144 (228)
...+.+++.++..+|.+.+-||-+ +-++..+| .+++..|-+|+++=. .+.|+ |.-. -. -.++|+.-+
T Consensus 65 ~~ID~ai~LA~~~~vil~TfGDm~RVPGs~~SL-~~ara~GadVriVyS--p~dAl~iA~~n--P~-----k~vVF~avG 134 (355)
T PF01924_consen 65 GDIDAAIELAKRPGVILATFGDMMRVPGSRGSL-AEARAEGADVRIVYS--PLDALKIAKEN--PD-----KEVVFFAVG 134 (355)
T ss_dssp HHHHHHHHHHTT--EEEEE-TTGGG---TT--H-HHHHHTT-EEEE-SS--HHHHHHHHHH---TT-----SEEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCcccccCCCCCCCH-HHHHhCCCCEEEEeC--HHHHHHHHHhC--CC-----CceEEEEeC
Confidence 345777788888899999999975 33444344 557888999999853 45554 4321 11 145555545
Q ss_pred CCCCCh--HHHHHHHhhcCCCeEEE
Q 027097 145 WRPGSF--YEKIKRNRSLGLHTLCL 167 (228)
Q Consensus 145 ~~p~~~--~~~i~~~~~~g~~tlvl 167 (228)
+..+.| -..|.+..+.+..-+.+
T Consensus 135 FETTaP~~A~~i~~a~~~~~~Nfsv 159 (355)
T PF01924_consen 135 FETTAPATAAAILQAKEEGIKNFSV 159 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHT-SSEEE
T ss_pred cccCcHHHHHHHHHHHHcCCCCEEE
Confidence 432222 23555666556554444
No 70
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.27 E-value=1.2e+02 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=29.6
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHH
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~ 119 (228)
..+.++.|+|++..-..++++.+++.|+.+.+.-.-+-+
T Consensus 55 ~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll 93 (358)
T TIGR02109 55 LQLHFSGGEPLARPDLVELVAHARRLGLYTNLITSGVGL 93 (358)
T ss_pred cEEEEeCccccccccHHHHHHHHHHcCCeEEEEeCCccC
Confidence 345677899999877778888898889887776654433
No 71
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.25 E-value=54 Score=22.33 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.6
Q ss_pred HHhCCCcEEEECCCCHHhH
Q 027097 103 AKKLGIQVKAVHNASVMNA 121 (228)
Q Consensus 103 ~~~~gi~v~viPGiSs~~a 121 (228)
+++.|++++++|=+..+++
T Consensus 21 lk~~gi~~~liP~P~~i~~ 39 (73)
T PF11823_consen 21 LKKNGIPVRLIPTPREISA 39 (73)
T ss_pred HHHCCCcEEEeCCChhccC
Confidence 6889999999999998854
No 72
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.93 E-value=3.5e+02 Score=23.38 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=61.9
Q ss_pred HHHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhH-HHHhCCccccCCceeEEecccCCCCC
Q 027097 70 ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA-VGICGLQLYRFGETVSIPFFTETWRP 147 (228)
Q Consensus 70 ~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a-~a~~Gl~l~~~~~~~~v~~~~~~~~p 147 (228)
.+++++.+.+ ++|.+.-.|-- +....++..++..-|.++..+++...+.+ ++.++ ..+ .++..+..+..
T Consensus 120 l~~av~~L~~A~rI~~~G~g~S--~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~----~~D---v~i~iS~sG~t 190 (281)
T COG1737 120 LERAVELLAKARRIYFFGLGSS--GLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLT----PGD---VVIAISFSGYT 190 (281)
T ss_pred HHHHHHHHHcCCeEEEEEechh--HHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCC----CCC---EEEEEeCCCCc
Confidence 3445555545 77888765532 23445666778888999999999988763 22221 111 12223444444
Q ss_pred CChHHHHHHHhhcCCCeEEEEecccCCchhHHhhcc
Q 027097 148 GSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRG 183 (228)
Q Consensus 148 ~~~~~~i~~~~~~g~~tlvlld~~~~~~~~~~l~~~ 183 (228)
....+.......+|..++.+.|.... .+..++.-
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~s--pla~~Ad~ 224 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADS--PLAKLADI 224 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCC--chhhhhce
Confidence 34456666677789889999998654 34444443
No 73
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=30.68 E-value=83 Score=26.08 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=31.9
Q ss_pred ecCCCCcchhhHHHHHHHH--hCCEEEEeCcccccccCCCcchhhHHhhHhCCCee
Q 027097 6 GLGLGDERDITLRGLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIA 59 (228)
Q Consensus 6 G~GpG~~~~lT~~A~~~L~--~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~ 59 (228)
++=|.+++.|...-.++++ ++|+|+.-+.++.-..+...+ .++++.++++.
T Consensus 45 ~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpe---Av~~l~~keip 97 (193)
T PRK09417 45 RLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPE---ATLAVADKEMP 97 (193)
T ss_pred EECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHH---HHHHHhCCcCC
Confidence 4557788888766667775 799999776654322223333 56666666653
No 74
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=29.73 E-value=1.3e+02 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=9.2
Q ss_pred EEecCCCCcchhhHHHHHHHHh
Q 027097 4 IIGLGLGDERDITLRGLEAVKK 25 (228)
Q Consensus 4 iVG~GpG~~~~lT~~A~~~L~~ 25 (228)
+||+|-.+.=-++.+|.+.+++
T Consensus 66 vvGTG~~G~l~l~~ea~e~~r~ 87 (121)
T COG1504 66 VVGTGQSGMLELSEEAREFFRK 87 (121)
T ss_pred EEecCceeEEEeCHHHHHHHHh
Confidence 3444444433444444444433
No 75
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=29.61 E-value=2.3e+02 Score=23.57 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=56.9
Q ss_pred CEEEEecCC--CCcchhhHHHHHHHH--hCCEEEEeCcccccccCCCcchhhHHhhHh---C-CCeeecChhhHHH-HHH
Q 027097 1 MLYIIGLGL--GDERDITLRGLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLY---G-KPIALADREMVEE-KAD 71 (228)
Q Consensus 1 ml~iVG~Gp--G~~~~lT~~A~~~L~--~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~---~-~~i~~~~~~~~e~-~~~ 71 (228)
+|++||.|- -++..+..+.++... ++.+++++..... .....+.+...+ + +.+........++ ...
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~-----~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~ 75 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEE-----PAEVGEEYRDVFERLGAREVEVLVIDSREAANDP 75 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcC-----hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCH
Confidence 578999994 345667777777764 6688887653210 011111222211 2 2222211111111 112
Q ss_pred HHHHHcCCCcEEEEecCCCCCccc------HHHHHHHHHhCCCcEEEECCCCHHhHH
Q 027097 72 KILSESQESNVAFLVVGDPFGATT------HTDLVVRAKKLGIQVKAVHNASVMNAV 122 (228)
Q Consensus 72 ~i~~~a~~~~Va~l~~GDP~~~~~------~~~l~~~~~~~gi~v~viPGiSs~~a~ 122 (228)
.+.+...+-++.++..||++.+-. ....++.+-++| -++-|.|+=+++
T Consensus 76 ~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G---~v~~G~SAGA~i 129 (217)
T cd03145 76 EVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGG---VVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcC---CEEEEccHHHHh
Confidence 233444456899999999955422 112233322344 467888875543
No 76
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=29.54 E-value=84 Score=27.56 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=12.2
Q ss_pred HHHHHhCCEEEEeCc
Q 027097 20 LEAVKKCDKVYIEAY 34 (228)
Q Consensus 20 ~~~L~~aDvV~~~~~ 34 (228)
.+.+++||+|++...
T Consensus 59 ~~~~~~aD~VivavP 73 (279)
T COG0287 59 AEAAAEADLVIVAVP 73 (279)
T ss_pred hhhcccCCEEEEecc
Confidence 678888999998654
No 77
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.02 E-value=1.6e+02 Score=23.46 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=38.0
Q ss_pred HHHHhCCEEEEeCcccccccCCCcchhhHHhhHhCCCeeecChhhHHHHHHHHHHHcCC-CcEEEEecCCCCCcccHHHH
Q 027097 21 EAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDL 99 (228)
Q Consensus 21 ~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~~~i~~~~~~~~e~~~~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l 99 (228)
+++++||++++++..-. .+.++.+.++.. +-.-.+....+++.+.+ +.-+++..|+|-. ....
T Consensus 1 ~~~~~adlv~~DG~~i~-----------~~~~~~g~~~~~--rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~---~~~~ 64 (172)
T PF03808_consen 1 EALNSADLVLPDGMPIV-----------WAARLLGRPLPE--RVTGSDLFPDLLRRAEQRGKRIFLLGGSEEV---LEKA 64 (172)
T ss_pred ChHHhCCEEecCCHHHH-----------HHHHHcCCCCCc--ccCHHHHHHHHHHHHHHcCCeEEEEeCCHHH---HHHH
Confidence 47899999998764211 222223444421 11222344555555544 4556677777732 2233
Q ss_pred HHHHHhC--CCcEE
Q 027097 100 VVRAKKL--GIQVK 111 (228)
Q Consensus 100 ~~~~~~~--gi~v~ 111 (228)
...+++. |+.+.
T Consensus 65 ~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 65 AANLRRRYPGLRIV 78 (172)
T ss_pred HHHHHHHCCCeEEE
Confidence 4445543 45444
No 78
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.72 E-value=1.6e+02 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=25.9
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeC
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEA 33 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~ 33 (228)
+.+.|+|| -.++|..+.+++-.+|+|+.+-
T Consensus 173 vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 173 VLVLGAGP--IGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred EEEECCcH--HHHHHHHHHHHcCCCcEEEeec
Confidence 45778888 6799999999999999999764
No 79
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=28.34 E-value=63 Score=23.60 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=21.3
Q ss_pred cEEEEecCCCCCccc---HHHHHHHHHhCC--CcEEEECCCCHH
Q 027097 81 NVAFLVVGDPFGATT---HTDLVVRAKKLG--IQVKAVHNASVM 119 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~---~~~l~~~~~~~g--i~v~viPGiSs~ 119 (228)
.-+.+..|.|+++-. ...+++.+++.+ +.+.+.-+.+..
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred EEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 346778899997732 334555556665 666666655444
No 80
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=28.16 E-value=2.5e+02 Score=20.93 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHh-CCEEEEeCcccccccCCCcchhhHHhhH-hCCCeeecChhhHHHHHHHHHHHcCC-CcEEEEecCCC
Q 027097 14 DITLRGLEAVKK-CDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE-SNVAFLVVGDP 90 (228)
Q Consensus 14 ~lT~~A~~~L~~-aDvV~~~~~~s~l~~~~~~~~~~~l~~~-~~~~i~~~~~~~~e~~~~~i~~~a~~-~~Va~l~~GDP 90 (228)
.+....++.|++ .++.+++.. +.+ .+... .+.+..+..... ...+.+++.+.+ |-|+....|--
T Consensus 6 ~~~~~~~~~l~~~~~v~~~~~~--------~~~---~~~~~l~~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d 72 (133)
T PF00389_consen 6 PLPDEEIERLEEGFEVEFCDSP--------SEE---ELAERLKDADAIIVGSGT--PLTAEVLEAAPNLKLISTAGAGVD 72 (133)
T ss_dssp S-SHHHHHHHHHTSEEEEESSS--------SHH---HHHHHHTTESEEEESTTS--TBSHHHHHHHTT-SEEEESSSSCT
T ss_pred cCCHHHHHHHHCCceEEEeCCC--------CHH---HHHHHhCCCeEEEEcCCC--CcCHHHHhccceeEEEEEcccccC
Confidence 356788889998 677776521 112 22222 233433322111 112345555666 66777666643
Q ss_pred CCcccHHHHHHHHHhCCCcEEEECCCCHHhH
Q 027097 91 FGATTHTDLVVRAKKLGIQVKAVHNASVMNA 121 (228)
Q Consensus 91 ~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a 121 (228)
.+ -+..+.++||.|--.||.++-+.
T Consensus 73 ~i------d~~~a~~~gI~V~n~~g~~~~aV 97 (133)
T PF00389_consen 73 NI------DLEAAKERGIPVTNVPGYNAEAV 97 (133)
T ss_dssp TB-------HHHHHHTTSEEEE-TTTTHHHH
T ss_pred cc------cHHHHhhCeEEEEEeCCcCCcch
Confidence 21 25678899999999999887553
No 81
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.53 E-value=1.3e+02 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCc
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQ 109 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~ 109 (228)
.-|.|++.|||...++. ++++.+.+.|..
T Consensus 18 a~i~yit~GdP~~e~s~-e~i~~L~~~GaD 46 (265)
T COG0159 18 ALIPYVTAGDPDLETSL-EIIKTLVEAGAD 46 (265)
T ss_pred CeEEEEeCCCCCHHHHH-HHHHHHHhCCCC
Confidence 57899999999877655 666666665543
No 82
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=27.46 E-value=97 Score=28.24 Aligned_cols=30 Identities=7% Similarity=-0.070 Sum_probs=15.7
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECC
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPG 115 (228)
.+|.+++..++..+. ......|+.+.-++.
T Consensus 32 ~~V~ii~~~~~~~~~------~~~~~~~v~~~~~~~ 61 (415)
T cd03816 32 WKVDLVGYLETPPHD------EILSNPNITIHPLPP 61 (415)
T ss_pred ceEEEEEecCCCCCH------HHhcCCCEEEEECCC
Confidence 688888765443221 113345666665543
No 83
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=27.33 E-value=2.7e+02 Score=24.90 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHhCCEEEEe
Q 027097 14 DITLRGLEAVKKCDKVYIE 32 (228)
Q Consensus 14 ~lT~~A~~~L~~aDvV~~~ 32 (228)
..+.+++++|++||+|++.
T Consensus 161 ~a~~~al~AI~~ADlIvlg 179 (310)
T TIGR01826 161 PALREAVEAIREADLIILG 179 (310)
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 5679999999999998874
No 84
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.32 E-value=2.2e+02 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred cEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
..+.++.|.|++..-..++++.+++.|+.+.+.-+-+-++
T Consensus 64 ~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~ 103 (378)
T PRK05301 64 LQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLT 103 (378)
T ss_pred cEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCC
Confidence 3455678999998878888888988899888876655443
No 85
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=27.17 E-value=68 Score=22.79 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=14.8
Q ss_pred CcEEEEecCCCCCcccHHH
Q 027097 80 SNVAFLVVGDPFGATTHTD 98 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~ 98 (228)
+-|.+|.+|||..=++|..
T Consensus 38 QivGYllSGDPaYItsh~n 56 (79)
T PF06135_consen 38 QIVGYLLSGDPAYITSHNN 56 (79)
T ss_pred HHHhheecCCCccccCccc
Confidence 4699999999976666644
No 86
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=26.93 E-value=4.6e+02 Score=24.56 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=64.2
Q ss_pred EecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEeccc--CCCCCCChHHHHHHHhhcCC
Q 027097 85 LVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFT--ETWRPGSFYEKIKRNRSLGL 162 (228)
Q Consensus 85 l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~--~~~~p~~~~~~i~~~~~~g~ 162 (228)
+..-+...-.+|+.....++++|.++.+..-=+.-..+-..|-.+|+- -|++++ .++-+.--...|.+....|.
T Consensus 3 VllD~~~~~~~yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~~ge~~YD~----LIif~~~~k~~g~~ls~~~ll~Fvd~Gg 78 (423)
T PF03345_consen 3 VLLDNRAIKETYSTFFNSLKERGYELTFKSADDESLSLFKYGERLYDH----LIIFPPSVKEFGGSLSPKTLLDFVDNGG 78 (423)
T ss_pred EEecCccchhhHHHHHHHHHhCCCEEEEecCCCCCcchhhCChhhcce----EEEeCCcccccCCCCCHHHHHHHHhCCC
Confidence 334455555678888999999999998876665333445677777752 133332 22222111567888999998
Q ss_pred CeEEEEecccCCchhHHhhccccccCCC
Q 027097 163 HTLCLLDIRVKEPSLESLCRGKKLYEPP 190 (228)
Q Consensus 163 ~tlvlld~~~~~~~~~~l~~~~~~~~~~ 190 (228)
..|+.++...-...+..++++.-++.++
T Consensus 79 Nilv~~s~~~~~~~ir~~~~E~gi~~~~ 106 (423)
T PF03345_consen 79 NILVAGSSDAIPDSIREFANELGIEFDP 106 (423)
T ss_pred cEEEEeCCCcCcHHHHHHHHHCCeEECC
Confidence 9999888872233566666665444444
No 87
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=26.92 E-value=1e+02 Score=27.31 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=34.7
Q ss_pred EEecccCCCCCCChHHHHHHHhhcCCCeEEEEecccCCchhHHhhccccccCCCCccCHHHHHHHHHHHHHHhC
Q 027097 137 SIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQG 210 (228)
Q Consensus 137 ~v~~~~~~~~p~~~~~~i~~~~~~g~~tlvlld~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ll~~~~~~~ 210 (228)
++-|...-+...|....+++..+.| ..+-+.|.... ..|||+.||++++++....-+
T Consensus 165 ~VRFGNVlgS~GSVip~F~~Qi~~g-~PlTvT~p~mt----------------Rffmti~EAv~Lvl~a~~~~~ 221 (293)
T PF02719_consen 165 SVRFGNVLGSRGSVIPLFKKQIKNG-GPLTVTDPDMT----------------RFFMTIEEAVQLVLQAAALAK 221 (293)
T ss_dssp EEEE-EETTGTTSCHHHHHHHHHTT-SSEEECETT-E----------------EEEE-HHHHHHHHHHHHHH--
T ss_pred EEEecceecCCCcHHHHHHHHHHcC-CcceeCCCCcE----------------EEEecHHHHHHHHHHHHhhCC
Confidence 4444443333446666677777777 55666666532 357999999999999876644
No 88
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=26.79 E-value=1.3e+02 Score=25.05 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEE
Q 027097 69 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA 112 (228)
Q Consensus 69 ~~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~v 112 (228)
..+.+++.++.+.|+++..+.+........++..++++|+++..
T Consensus 176 ~~~~v~~~~~~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvt 219 (224)
T TIGR02884 176 AYKQIMKKIHPGAILLLHAVSKDNAEALDKIIKDLKEQGYTFKS 219 (224)
T ss_pred HHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 34445554444666666665554333444556666677766543
No 89
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=26.46 E-value=1.5e+02 Score=22.04 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=26.3
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhC---CCcEEEECCCCH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASV 118 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~---gi~v~viPGiSs 118 (228)
....++..|||+.+.....++..+.+. ++.+.+.-..+.
T Consensus 46 ~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~ 87 (166)
T PF04055_consen 46 VKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTL 87 (166)
T ss_dssp HEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTT
T ss_pred CcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccc
Confidence 567778899999998877777777664 444444443333
No 90
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.16 E-value=1.3e+02 Score=25.70 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 71 DKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 71 ~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
++|+..+.++.|+++-. +.++..+-+-.+++||+|.--+..
T Consensus 105 EKIva~~ak~~IvIvDe---------sKlV~~LG~fplPVEVip~a~~~v 145 (227)
T COG0120 105 EKIVASAAKRFIVIVDE---------SKLVEVLGKFPLPVEVIPFARSAV 145 (227)
T ss_pred HHHHHHhcCeEEEEEeC---------ccchhhcCCCCcCEEEchhHHHHH
Confidence 45666655566666532 256666766779999999876654
No 91
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=25.39 E-value=2.6e+02 Score=23.05 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCc-EEEEecCCCCCccc-HH------HHHHHHHhCCCcEEEECCCCH
Q 027097 66 VEEKADKILSESQESN-VAFLVVGDPFGATT-HT------DLVVRAKKLGIQVKAVHNASV 118 (228)
Q Consensus 66 ~e~~~~~i~~~a~~~~-Va~l~~GDP~~~~~-~~------~l~~~~~~~gi~v~viPGiSs 118 (228)
.++..+.+++.+.+.+ -.++..||=.-.+. .. ..++.+.+.++++-++||=--
T Consensus 20 ~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 20 FDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 4445566666665533 35567999754444 21 344445556788989998543
No 92
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=25.38 E-value=85 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=24.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEE
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~ 30 (228)
++.+||.|..+...+..+..++|.++.+-+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v 32 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNI 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 477899988777788999999999986544
No 93
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.26 E-value=1.1e+02 Score=19.74 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=24.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEE
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~ 30 (228)
|+.+||.|..+...+..+..++|++..+.+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 578899999666678889999998766665
No 94
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=24.68 E-value=3.9e+02 Score=24.49 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=19.3
Q ss_pred EecCCCCcchhhHHHHHHHHhC--CEEEEe
Q 027097 5 IGLGLGDERDITLRGLEAVKKC--DKVYIE 32 (228)
Q Consensus 5 VG~GpG~~~~lT~~A~~~L~~a--DvV~~~ 32 (228)
||.|-|-..+-...+.+.++.. |++.++
T Consensus 1 Ig~~sGf~gD~~~a~~~l~~~g~~d~l~~d 30 (362)
T PF07287_consen 1 IGNGSGFWGDRPDAAVRLARGGDVDYLVGD 30 (362)
T ss_pred CeeecccccCcHHHHHHHHhcCCCCEEEEe
Confidence 5667777777777777777654 667664
No 95
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=24.55 E-value=2.5e+02 Score=21.36 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=29.0
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhC--CCcEEEECCCCH
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASV 118 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~--gi~v~viPGiSs 118 (228)
....++..|||+.......+++.+++. ++.+.+.-+...
T Consensus 45 ~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 45 VEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred ceEEEEeCCcCCccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 566777899999887666677777776 777777766554
No 96
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=24.47 E-value=4.5e+02 Score=22.51 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCCCC
Q 027097 71 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGS 149 (228)
Q Consensus 71 ~~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~ 149 (228)
+++.+...+ ++|.+.-.|.- +....++...+...|.++.+.+....+.. .... +.. +. .+++.+..+....
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S--~~~A~~l~~~l~~~g~~~~~~~d~~~~~~-~~~~--~~~-~D--l~I~iS~sG~t~~ 202 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGS--AAIARDVQHKFLRIGVRCQAYDDAHIMLM-SAAL--LQE-GD--VVLVVSHSGRTSD 202 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHH--HHHHHHHHHHHhhCCCeEEEcCCHHHHHH-HHhc--CCC-CC--EEEEEeCCCCCHH
Confidence 334444444 77877777742 33444555666677888888776543322 2211 111 22 2233344443323
Q ss_pred hHHHHHHHhhcCCCeEEEEecccC
Q 027097 150 FYEKIKRNRSLGLHTLCLLDIRVK 173 (228)
Q Consensus 150 ~~~~i~~~~~~g~~tlvlld~~~~ 173 (228)
..+.+.....+|..++.+.+....
T Consensus 203 ~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 203 VIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345555556678889989887643
No 97
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=24.07 E-value=3.1e+02 Score=20.45 Aligned_cols=47 Identities=15% Similarity=-0.000 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCCCcccHHHHHHHHHhCC-----CcEEEECCCCHHhHHH-HhCCccc
Q 027097 79 ESNVAFLVVGDPFGATTHTDLVVRAKKLG-----IQVKAVHNASVMNAVG-ICGLQLY 130 (228)
Q Consensus 79 ~~~Va~l~~GDP~~~~~~~~l~~~~~~~g-----i~v~viPGiSs~~a~a-~~Gl~l~ 130 (228)
..+.++++.|| +|..+.+..+.+.+ .++-++|+=|. +.+| .+|++..
T Consensus 49 ~~d~vvv~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GTg-Ndfar~lgi~~~ 101 (124)
T smart00046 49 KFDRVLVCGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGTG-NDLARSLGWGGG 101 (124)
T ss_pred cCCEEEEEccc----cHHHHHHHHHHhcccccCCCcEEEeCCCCh-hHHHHHcCCCCC
Confidence 34578888999 45556666665443 68999999774 4444 4777653
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=23.89 E-value=3.1e+02 Score=22.58 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.8
Q ss_pred cEEEEecCCCCCcccH-HHHHHHHHhCCCcEEEECCC
Q 027097 81 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAVHNA 116 (228)
Q Consensus 81 ~Va~l~~GDP~~~~~~-~~l~~~~~~~gi~v~viPGi 116 (228)
..+.++.|+|++.... ..+++.+++.|+.+.+.-+-
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 3456678999998654 47888888889888776544
No 99
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=23.51 E-value=3.1e+02 Score=23.51 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=46.0
Q ss_pred HHHHHHhCCEEEEeCcccccccCCCcchhhHHhhHh------CCCeeecChhhHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 027097 19 GLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY------GKPIALADREMVEEKADKILSESQESNVAFLVVGDPFG 92 (228)
Q Consensus 19 A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~------~~~i~~~~~~~~e~~~~~i~~~a~~~~Va~l~~GDP~~ 92 (228)
|...+.+.++++.+-.+|-+ +-.....+.++. ++-+++. .+..++. +.+. .+|.++..|.-.+
T Consensus 145 ARAlvh~P~i~vlDEP~sGL----Di~~~r~~~dfi~q~k~egr~viFS-SH~m~Ev-ealC-----Drvivlh~Gevv~ 213 (245)
T COG4555 145 ARALVHDPSILVLDEPTSGL----DIRTRRKFHDFIKQLKNEGRAVIFS-SHIMQEV-EALC-----DRVIVLHKGEVVL 213 (245)
T ss_pred HHHHhcCCCeEEEcCCCCCc----cHHHHHHHHHHHHHhhcCCcEEEEe-cccHHHH-HHhh-----heEEEEecCcEEE
Confidence 66788899999988776544 323222444442 2334443 3333332 2232 3688888998877
Q ss_pred cccHHHHHHHHHhCC
Q 027097 93 ATTHTDLVVRAKKLG 107 (228)
Q Consensus 93 ~~~~~~l~~~~~~~g 107 (228)
.++...+..+...++
T Consensus 214 ~gs~~~l~~r~~~~~ 228 (245)
T COG4555 214 EGSIEALDARTVLRN 228 (245)
T ss_pred cCCHHHHHHHHhhcC
Confidence 777767766654443
No 100
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=23.39 E-value=4.2e+02 Score=24.04 Aligned_cols=104 Identities=24% Similarity=0.324 Sum_probs=55.9
Q ss_pred EEEEecCCCCcchhhHHHHHHHHhCCEEEEeCcccccccCCCcchhhHHh---h-HhCCCeee-----cC----hhhHHH
Q 027097 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLE---K-LYGKPIAL-----AD----REMVEE 68 (228)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~---~-~~~~~i~~-----~~----~~~~e~ 68 (228)
+.+||+|=|+-.-+..--.+-++.++.+.+-+. ..++...+ + .++..+.. .+ +...++
T Consensus 14 I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD---------~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee 84 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTD---------AQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEE 84 (338)
T ss_pred EEEEEeCCcchHHHHHHHHhhhCceEEEEeccC---------HHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHHH
Confidence 678999988876666666667777777775432 22111111 0 01111110 11 223445
Q ss_pred HHHHHHHHcCCCcEEEEecCCCCCcccHH--HHHHHHHhCC---CcEEEEC
Q 027097 69 KADKILSESQESNVAFLVVGDPFGATTHT--DLVVRAKKLG---IQVKAVH 114 (228)
Q Consensus 69 ~~~~i~~~a~~~~Va~l~~GDP~~~~~~~--~l~~~~~~~g---i~v~viP 114 (228)
..++|.+.++.-+.+|++.|.=+-.+++. -+.+.+++.| +.+.+.|
T Consensus 85 ~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~P 135 (338)
T COG0206 85 SIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLP 135 (338)
T ss_pred HHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEec
Confidence 55667666666778999988765444432 2444466654 3444444
No 101
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.28 E-value=6e+02 Score=23.47 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHc--C--CCcEEEEecC------CCC------Ccc-cHHHHHHHHHhCCCcEEEECCCC
Q 027097 66 VEEKADKILSES--Q--ESNVAFLVVG------DPF------GAT-THTDLVVRAKKLGIQVKAVHNAS 117 (228)
Q Consensus 66 ~e~~~~~i~~~a--~--~~~Va~l~~G------DP~------~~~-~~~~l~~~~~~~gi~v~viPGiS 117 (228)
.+++...+...+ + +++.++++.| ||- ..+ .+..+.+++.++|.+|-++.|-.
T Consensus 170 ~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 170 PEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 455555554433 2 3567888888 661 123 57788889999999998886643
No 102
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=22.99 E-value=4.8e+02 Score=22.29 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=39.8
Q ss_pred HHHHhCCEEEEeCcccccccCCCcchhhHHhhHhC-CCeeecChhh---HHHHHHHHHHHcCCCcEEEEecCCCCCcccH
Q 027097 21 EAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG-KPIALADREM---VEEKADKILSESQESNVAFLVVGDPFGATTH 96 (228)
Q Consensus 21 ~~L~~aDvV~~~~~~s~l~~~~~~~~~~~l~~~~~-~~i~~~~~~~---~e~~~~~i~~~a~~~~Va~l~~GDP~~~~~~ 96 (228)
++-++=|+++++|..|.+ |+.-+ .++..-. +++.--.++. ++++.+.+.+.+ +.+++++.-| | |.
T Consensus 111 ~iW~~rdilIVEG~~sR~--GvgnD---LFdnaksI~rIicPsknAf~~~d~I~~~i~~~~-~~~LiLiaLG-P----TA 179 (225)
T PF08759_consen 111 QIWKDRDILIVEGEKSRS--GVGND---LFDNAKSIKRIICPSKNAFSKYDEILEAIKKYA-KDKLILIALG-P----TA 179 (225)
T ss_pred HHhCCCcEEEEecCCeec--CCCch---hhhCccceEEEECCchhhHHHHHHHHHHHHHhC-CCcEEEEecC-C----cc
Confidence 445566999999876653 23333 3433211 1222112333 444444444432 2357777777 4 45
Q ss_pred HHHHHHHHhCCCc
Q 027097 97 TDLVVRAKKLGIQ 109 (228)
Q Consensus 97 ~~l~~~~~~~gi~ 109 (228)
.-|...+.+.|..
T Consensus 180 tVLayDL~~~G~q 192 (225)
T PF08759_consen 180 TVLAYDLSKLGYQ 192 (225)
T ss_pred hhhHHHHHhcCCe
Confidence 5566666666653
No 103
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=22.81 E-value=1.9e+02 Score=26.22 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHcCCCcE-EEEecCCCCC------cc--cHHHHHHHHHhCCCcEEEECCC
Q 027097 65 MVEEKADKILSESQESNV-AFLVVGDPFG------AT--THTDLVVRAKKLGIQVKAVHNA 116 (228)
Q Consensus 65 ~~e~~~~~i~~~a~~~~V-a~l~~GDP~~------~~--~~~~l~~~~~~~gi~v~viPGi 116 (228)
...+...++++.+++.+| ++|.+||-|= .. .....++++.+.|+++-+|||=
T Consensus 24 d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 24 DQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred HHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 344556677777777555 5667898531 11 1223444455678999999983
No 104
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.24 E-value=5.5e+02 Score=22.65 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEE----ECCCCHHhH
Q 027097 79 ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA----VHNASVMNA 121 (228)
Q Consensus 79 ~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~v----iPGiSs~~a 121 (228)
.++|+++..-|++-.+....+.+.+++.|+++.. -+|.+.++.
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~ 186 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKA 186 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHH
Confidence 3789999988886656665566667777776532 244455653
No 105
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.09 E-value=3.2e+02 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCCccc--HHHHHHHHHhC-CCc-EEEECC
Q 027097 80 SNVAFLVVGDPFGATT--HTDLVVRAKKL-GIQ-VKAVHN 115 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~--~~~l~~~~~~~-gi~-v~viPG 115 (228)
-+-++++.|||++.+. ..+++.++++. +++ +++-.-
T Consensus 156 I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR 195 (417)
T TIGR03820 156 IRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTR 195 (417)
T ss_pred CCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeec
Confidence 3558999999998765 33445666552 454 555444
No 106
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.87 E-value=1.6e+02 Score=27.20 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=35.2
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
++.+++.+|--...-.|.-.++.+.+.|+..++|-|.|+=+
T Consensus 82 GrtAlvlsGGg~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Ga 122 (391)
T cd07229 82 GRTALVLQGGSIFGLCHLGVVKALWLRGLLPRIITGTATGA 122 (391)
T ss_pred CCEEEEecCcHHHHHHHHHHHHHHHHcCCCCceEEEecHHH
Confidence 78999988877666678888999999999999999999743
No 107
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.81 E-value=3.1e+02 Score=24.40 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHc----CC-CcEEEEecCCCCCcccHHHHHHHHHhCC-CcEEEECCCCHHhHHHHh
Q 027097 64 EMVEEKADKILSES----QE-SNVAFLVVGDPFGATTHTDLVVRAKKLG-IQVKAVHNASVMNAVGIC 125 (228)
Q Consensus 64 ~~~e~~~~~i~~~a----~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~g-i~v~viPGiSs~~a~a~~ 125 (228)
+...+..+.+.... .+ ..|++.-.|-|.+|.-..++++.+++.| +.+=++-+-|--.....+
T Consensus 60 ~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 60 ESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred HHHHHHHHHHhcccccccCCCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 33444445555553 24 6788888999999999999999999999 688888877763444333
No 108
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.73 E-value=5e+02 Score=22.02 Aligned_cols=94 Identities=10% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHcCC-CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHHHhCCccccCCceeEEecccCCCCCCCh
Q 027097 72 KILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSF 150 (228)
Q Consensus 72 ~i~~~a~~-~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a~~Gl~l~~~~~~~~v~~~~~~~~p~~~ 150 (228)
.+.+...+ ++|.+.-.|. -+....++...+...|.++........... ....+ ... .+ ++..+..+.....
T Consensus 120 ~~~~~i~~a~~I~i~G~G~--s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~-~~~~~--~~~--Dv-~I~iS~sg~~~~~ 191 (278)
T PRK11557 120 ECVTMLRSARRIILTGIGA--SGLVAQNFAWKLMKIGINAVAERDMHALLA-TVQAL--SPD--DL-LLAISYSGERREL 191 (278)
T ss_pred HHHHHHhcCCeEEEEecCh--hHHHHHHHHHHHhhCCCeEEEcCChHHHHH-HHHhC--CCC--CE-EEEEcCCCCCHHH
Confidence 33444444 7888887773 244555666667777888776544333222 22222 111 12 2233444443333
Q ss_pred HHHHHHHhhcCCCeEEEEecccC
Q 027097 151 YEKIKRNRSLGLHTLCLLDIRVK 173 (228)
Q Consensus 151 ~~~i~~~~~~g~~tlvlld~~~~ 173 (228)
.+.+.....+|..++++.+....
T Consensus 192 ~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 192 NLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 45566666788899999987643
No 109
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.55 E-value=3.3e+02 Score=21.29 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCH
Q 027097 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (228)
Q Consensus 66 ~e~~~~~i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs 118 (228)
.++..+.|.+....-.-+.++.|+ +.+.-...+++.++++|+++.+..|-+.
T Consensus 48 ~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 48 PEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344444444432223457788999 6666566788888999999999888543
No 110
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.37 E-value=1.2e+02 Score=19.78 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=11.3
Q ss_pred HHHHHHHhCCCcEEEECCCC
Q 027097 98 DLVVRAKKLGIQVKAVHNAS 117 (228)
Q Consensus 98 ~l~~~~~~~gi~v~viPGiS 117 (228)
.+.+.+++.| ++++||+-
T Consensus 45 ~~~~~~~~~g--i~~i~G~E 62 (67)
T smart00481 45 EFYKAAKKAG--IKPIIGLE 62 (67)
T ss_pred HHHHHHHHcC--CeEEEEEE
Confidence 4445555554 67899874
No 111
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=21.09 E-value=2.8e+02 Score=24.83 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHhCCEEEE
Q 027097 13 RDITLRGLEAVKKCDKVYI 31 (228)
Q Consensus 13 ~~lT~~A~~~L~~aDvV~~ 31 (228)
-.-+.+++++|++||+|+.
T Consensus 171 a~~~p~vl~AI~~AD~IVl 189 (303)
T cd07186 171 ARPAPEVLEAIEDADLVII 189 (303)
T ss_pred CCCCHHHHHHHHhCCEEEE
Confidence 3578999999999998775
No 112
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.04 E-value=1.2e+02 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEE
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~ 30 (228)
++.+||.|..+...+..+..++|.++.+-+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v 32 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINV 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 467899998776778888999999886444
No 113
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.99 E-value=1.4e+02 Score=23.86 Aligned_cols=47 Identities=13% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCC--CcccHHHHHHHHHhCCCcEEEE
Q 027097 67 EEKADKILSESQESNVAFLVVGDPF--GATTHTDLVVRAKKLGIQVKAV 113 (228)
Q Consensus 67 e~~~~~i~~~a~~~~Va~l~~GDP~--~~~~~~~l~~~~~~~gi~v~vi 113 (228)
+++.+.+++.++.+.|+++..||.. .......++..++++|+++..+
T Consensus 139 ~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 139 ESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 3444555555555677777765532 2223344555566777665543
No 114
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.96 E-value=3.6e+02 Score=20.03 Aligned_cols=107 Identities=8% Similarity=0.003 Sum_probs=57.1
Q ss_pred EEEecCCCCcchhhHHHHHHHHhC---CEEEEeCcccccccCCCcchhhHHhhHh--CCCeee--cChhhHHHHHHHHHH
Q 027097 3 YIIGLGLGDERDITLRGLEAVKKC---DKVYIEAYTSLLSFGLSTDGLSTLEKLY--GKPIAL--ADREMVEEKADKILS 75 (228)
Q Consensus 3 ~iVG~GpG~~~~lT~~A~~~L~~a---DvV~~~~~~s~l~~~~~~~~~~~l~~~~--~~~i~~--~~~~~~e~~~~~i~~ 75 (228)
+++|+.||+-..+=..-...+-++ ++++....+ +.+ +.++... +..++. .......+....+++
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v-------p~e--~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~ 72 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ-------TPE--EIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIE 72 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC-------CHH--HHHHHHHHcCCCEEEEcccchhhHHHHHHHHH
Confidence 477888988888877776665544 455432211 111 1222221 223322 112223334455555
Q ss_pred HcCC---CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHhHHH
Q 027097 76 ESQE---SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVG 123 (228)
Q Consensus 76 ~a~~---~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~a~a 123 (228)
.+++ .++.++..|.+. .....++.+.|++--+-||.+.-..++
T Consensus 73 ~L~~~~~~~i~i~~GG~~~-----~~~~~~~~~~G~d~~~~~~~~~~~~~~ 118 (122)
T cd02071 73 LLRELGAGDILVVGGGIIP-----PEDYELLKEMGVAEIFGPGTSIEEIID 118 (122)
T ss_pred HHHhcCCCCCEEEEECCCC-----HHHHHHHHHCCCCEEECCCCCHHHHHH
Confidence 5443 267777777642 244566778888777777766655443
No 115
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.88 E-value=4.4e+02 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 027097 64 EMVEEKADKILSESQESNVAFLVVGDPFG 92 (228)
Q Consensus 64 ~~~e~~~~~i~~~a~~~~Va~l~~GDP~~ 92 (228)
..+++..+.+.+.+..+++++|+|+...+
T Consensus 398 ~~le~Av~~a~~~a~~gd~VLLSPacASf 426 (448)
T COG0771 398 ETLEEAVQLARELAQPGDVVLLSPACASF 426 (448)
T ss_pred CcHHHHHHHHHHhhcCCCeEEEcccccch
Confidence 34566666776766678899999988753
No 116
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.81 E-value=5.9e+02 Score=22.53 Aligned_cols=32 Identities=9% Similarity=-0.139 Sum_probs=21.2
Q ss_pred CccCHHHHHHHHHHHHHHhCCCCCCCCcEEEEEeccc
Q 027097 191 RYMTVNIAIEQLLEVELLQGESGKAHELKIILKQLQT 227 (228)
Q Consensus 191 ~~~~~~~a~~~ll~~~~~~~~~~~~~~~~~v~~~~~~ 227 (228)
.+.|+.-++++|..+.- .+...+.+|+||.+.
T Consensus 138 ~PcTp~ai~~ll~~~~i-----~~~Gk~V~viGrs~~ 169 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHG-----DLSGLNAVVIGRSNL 169 (296)
T ss_pred cCCCHHHHHHHHHHhCC-----CCCCCEEEEEcCCcc
Confidence 34678777887765321 355668899998763
No 117
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.66 E-value=4.4e+02 Score=24.32 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHc----CCCcEEEEecCCCCC
Q 027097 65 MVEEKADKILSES----QESNVAFLVVGDPFG 92 (228)
Q Consensus 65 ~~e~~~~~i~~~a----~~~~Va~l~~GDP~~ 92 (228)
.+++..+.+.+.+ +.+++++++||.+.+
T Consensus 407 ~l~~Av~~a~~~a~~~~~~g~~vllsP~~as~ 438 (460)
T PRK01390 407 TLERAVAAAAADAAADGAPEPVVLLSPACASF 438 (460)
T ss_pred CHHHHHHHHHHhhhccCCCCCEEEeChhhhcc
Confidence 3555556666666 557888888887743
No 118
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=20.64 E-value=1.3e+02 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=16.8
Q ss_pred EEEecCCCCcchhhHHHHHHHHhCCEEEEe
Q 027097 3 YIIGLGLGDERDITLRGLEAVKKCDKVYIE 32 (228)
Q Consensus 3 ~iVG~GpG~~~~lT~~A~~~L~~aDvV~~~ 32 (228)
++.|. |..+ ..+.+++++|++||.|++.
T Consensus 163 ~~~~~-~~~~-~~~p~~l~AI~~AD~Iiig 190 (300)
T PF01933_consen 163 FLEGA-PEEA-KANPEALEAIEEADLIIIG 190 (300)
T ss_dssp EEECT-STT---B-HHHHHHHHH-SEEEE-
T ss_pred EEecC-cccc-CCCHHHHHHHHhCCEEEEc
Confidence 34444 4443 5789999999999977654
No 119
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.52 E-value=4.1e+02 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCC
Q 027097 66 VEEKADKILSESQESNVAFLVVGDPFG 92 (228)
Q Consensus 66 ~e~~~~~i~~~a~~~~Va~l~~GDP~~ 92 (228)
.++..+.+.+.++.+++++++||.+.+
T Consensus 355 ~e~av~~~~~~~~~gdvVLlSPa~aSf 381 (401)
T PRK03815 355 LEKAVEEIKKVLKQNEVALLSPAAASL 381 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEeChhhhcc
Confidence 455555554545557788888887743
No 120
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.49 E-value=1.2e+02 Score=19.40 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=23.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEE
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKV 29 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV 29 (228)
++.+||.|..+.-.+..+..++|.++.+=
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~ 31 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRIN 31 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCC
Confidence 46789988877678888999999998663
No 121
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=20.08 E-value=1.7e+02 Score=25.88 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHcCCCcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHH
Q 027097 73 ILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (228)
Q Consensus 73 i~~~a~~~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~ 119 (228)
+...+..++++++..|=-.-.-.|.-+++.+.++|+++..|-|.|+=
T Consensus 7 l~r~l~~~~~gLvL~GGG~RG~ahiGvL~aLee~gi~~d~v~GtSaG 53 (306)
T cd07225 7 LARVLTGNSIALVLGGGGARGCAHIGVIKALEEAGIPVDMVGGTSIG 53 (306)
T ss_pred HHHHhcCCCEEEEECChHHHHHHHHHHHHHHHHcCCCCCEEEEECHH
Confidence 33444557888888775433345666888899999999999999973
No 122
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=20.03 E-value=1.7e+02 Score=26.05 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=33.8
Q ss_pred CcEEEEecCCCCCcccHHHHHHHHHhCCCcEEEECCCCHHh
Q 027097 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (228)
Q Consensus 80 ~~Va~l~~GDP~~~~~~~~l~~~~~~~gi~v~viPGiSs~~ 120 (228)
++++++.+|--+..--|...++.+.+.|+...++-|+|+=+
T Consensus 68 g~~aLvlsGGg~~g~~h~Gvl~aL~e~~l~~~~i~GtSaGA 108 (298)
T cd07206 68 GRTALMLSGGASLGLFHLGVVKALWEQDLLPRVISGSSAGA 108 (298)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHHcCCCCCEEEEEcHHH
Confidence 78899988877655556678888889999999999999854
No 123
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=20.02 E-value=1.1e+02 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHHhCCEEE
Q 027097 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (228)
Q Consensus 1 ml~iVG~GpG~~~~lT~~A~~~L~~aDvV~ 30 (228)
++.+||.|...+ .+..|..++|.+..+=+
T Consensus 4 ~VsvVG~gm~~~-gv~~ki~~~L~~~~I~v 32 (66)
T cd04915 4 IVSVIGRDLSTP-GVLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEECCCCCcc-hHHHHHHHHHHHCCCCE
Confidence 367899999766 48889999998876544
Done!