Query 027098
Match_columns 228
No_of_seqs 258 out of 1715
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 1.6E-41 3.4E-46 345.3 14.7 166 18-222 14-180 (1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 6.9E-41 1.5E-45 340.8 15.0 168 18-222 1-168 (1021)
3 PF02837 Glyco_hydro_2_N: Glyc 99.9 5.1E-24 1.1E-28 174.2 11.2 127 86-223 1-128 (167)
4 PRK10150 beta-D-glucuronidase; 99.8 5.1E-21 1.1E-25 186.2 12.0 116 86-222 9-124 (604)
5 COG3250 LacZ Beta-galactosidas 99.7 2.3E-16 5.1E-21 157.5 9.2 132 86-223 9-142 (808)
6 KOG2024 Beta-Glucuronidase GUS 98.7 1.3E-08 2.7E-13 89.7 5.7 116 85-221 28-149 (297)
7 KOG2230 Predicted beta-mannosi 98.2 2.1E-06 4.6E-11 82.7 6.4 110 87-221 20-134 (867)
8 COG3250 LacZ Beta-galactosidas 97.2 0.00077 1.7E-08 68.4 6.5 58 159-220 63-120 (808)
9 PF13364 BetaGal_dom4_5: Beta- 96.5 0.01 2.2E-07 46.0 6.7 43 158-202 34-78 (111)
10 PLN03059 beta-galactosidase; P 94.0 0.16 3.5E-06 52.0 7.2 46 158-203 469-518 (840)
11 PLN03059 beta-galactosidase; P 88.0 0.85 1.8E-05 46.9 5.3 41 158-202 618-659 (840)
12 PF14814 UB2H: Bifunctional tr 78.7 3.6 7.9E-05 30.2 4.0 42 158-200 38-82 (85)
13 PF06832 BiPBP_C: Penicillin-B 75.9 9.3 0.0002 27.8 5.6 45 174-218 30-77 (89)
14 PF08308 PEGA: PEGA domain; I 75.0 2.8 6E-05 29.1 2.4 24 179-202 3-26 (71)
15 PF04566 RNA_pol_Rpb2_4: RNA p 74.1 2.6 5.7E-05 29.4 2.1 13 191-203 1-13 (63)
16 KOG0496 Beta-galactosidase [Ca 72.8 4.7 0.0001 40.3 4.2 42 158-203 556-597 (649)
17 PF11008 DUF2846: Protein of u 66.5 18 0.0004 27.7 5.6 18 186-203 40-57 (117)
18 smart00560 LamGL LamG-like jel 64.3 12 0.00026 29.1 4.2 27 177-203 65-91 (133)
19 KOG0496 Beta-galactosidase [Ca 62.6 18 0.00039 36.3 5.9 47 177-224 434-491 (649)
20 PF07691 PA14: PA14 domain; I 59.7 30 0.00066 26.5 5.8 42 158-203 45-86 (145)
21 smart00758 PA14 domain in bact 59.2 27 0.00059 26.8 5.5 41 158-202 43-83 (136)
22 PF03170 BcsB: Bacterial cellu 52.2 27 0.00059 34.4 5.3 57 164-220 327-407 (605)
23 PRK10824 glutaredoxin-4; Provi 51.6 2.2 4.8E-05 33.4 -1.9 37 167-203 50-86 (115)
24 COG0278 Glutaredoxin-related p 49.1 8.4 0.00018 29.7 0.9 17 186-202 70-86 (105)
25 PF07908 D-aminoacyl_C: D-amin 48.9 14 0.0003 24.3 1.8 13 188-200 20-32 (48)
26 PF14099 Polysacc_lyase: Polys 44.6 32 0.0007 28.9 4.0 27 177-203 158-185 (224)
27 KOG1752 Glutaredoxin and relat 40.5 15 0.00034 28.1 1.2 27 177-203 57-83 (104)
28 PF10262 Rdx: Rdx family; Int 40.0 37 0.0008 24.1 3.1 22 177-199 34-55 (76)
29 PF13385 Laminin_G_3: Concanav 38.9 35 0.00076 25.6 3.1 25 177-203 89-113 (157)
30 smart00561 MBT Present in Dros 37.0 28 0.0006 26.2 2.1 20 175-194 55-74 (96)
31 PF15625 CC2D2AN-C2: CC2D2A N- 35.1 52 0.0011 27.0 3.7 37 187-226 39-76 (168)
32 PF00337 Gal-bind_lectin: Gala 33.4 60 0.0013 25.0 3.6 29 174-202 81-109 (133)
33 cd00070 GLECT Galectin/galacto 30.6 74 0.0016 24.5 3.7 29 174-202 76-104 (127)
34 PF03170 BcsB: Bacterial cellu 28.8 1.5E+02 0.0033 29.2 6.4 43 161-203 29-79 (605)
35 PF06439 DUF1080: Domain of Un 27.4 99 0.0021 24.7 4.1 17 187-203 139-155 (185)
36 smart00276 GLECT Galectin. Gal 27.1 91 0.002 24.1 3.7 29 174-202 75-103 (128)
37 cd00152 PTX Pentraxins are pla 26.0 76 0.0017 26.5 3.3 26 177-202 94-119 (201)
38 cd06481 ACD_HspB9_like Alpha c 25.8 80 0.0017 23.0 3.0 23 160-182 53-75 (87)
39 cd06497 ACD_alphaA-crystallin_ 25.6 73 0.0016 23.2 2.7 20 163-182 55-74 (86)
40 TIGR00365 monothiol glutaredox 25.5 12 0.00026 27.9 -1.6 38 166-203 46-83 (97)
41 PF12733 Cadherin-like: Cadher 25.1 1.8E+02 0.0038 20.6 4.7 55 162-220 15-70 (88)
42 PTZ00062 glutaredoxin; Provisi 24.8 17 0.00037 31.1 -0.9 39 165-203 146-184 (204)
43 PF14683 CBM-like: Polysacchar 24.3 1.3E+02 0.0028 24.8 4.3 39 161-200 63-105 (167)
44 PRK11114 cellulose synthase re 24.0 1.8E+02 0.0039 29.8 6.0 39 164-202 84-130 (756)
45 cd06477 ACD_HspB3_Like Alpha c 23.6 1.1E+02 0.0024 22.3 3.3 21 161-181 50-70 (83)
46 cd06476 ACD_HspB2_like Alpha c 22.9 1E+02 0.0023 22.3 3.1 22 161-182 50-71 (83)
47 PRK07963 fliN flagellar motor 22.8 2E+02 0.0043 23.2 4.9 40 179-221 86-127 (137)
48 PRK08035 type III secretion sy 22.3 1.7E+02 0.0037 27.1 4.9 40 164-203 261-302 (323)
49 PRK06789 flagellar motor switc 22.2 1E+02 0.0022 22.3 2.8 19 185-203 40-58 (74)
50 PF08669 GCV_T_C: Glycine clea 22.0 1.5E+02 0.0033 21.3 3.9 27 177-203 22-52 (95)
51 PF02820 MBT: mbt repeat; Int 21.6 1E+02 0.0022 21.6 2.7 20 175-194 24-43 (73)
52 PF11324 DUF3126: Protein of u 21.6 2.4E+02 0.0052 19.8 4.5 18 184-201 25-42 (63)
53 cd06498 ACD_alphaB-crystallin_ 21.3 91 0.002 22.6 2.5 21 162-182 51-71 (84)
54 PRK15222 putative pilin struct 21.1 90 0.002 25.8 2.6 23 180-202 60-82 (156)
55 PF13464 DUF4115: Domain of un 20.3 1.4E+02 0.003 21.0 3.2 26 175-201 37-62 (77)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=1.6e-41 Score=345.32 Aligned_cols=166 Identities=36% Similarity=0.738 Sum_probs=153.4
Q ss_pred CCCCCCcccccccccCCCCCccccCCHHHHhhhhhhcccccccccCCCcccchhhHHhhhhccccCCCCCceeeccccce
Q 027098 18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWK 97 (228)
Q Consensus 18 ~~~wenp~v~~~n~~~~~a~~~~y~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~W~ 97 (228)
.++||||+|+++||||+||+|+||+++++|+.. ..|+.+++|||.|+
T Consensus 14 ~~~wenp~v~~~nr~~~~a~~~~~~~~~~a~~~---------------------------------~~s~~~~sLnG~W~ 60 (1027)
T PRK09525 14 RRDWENPGVTQLNRLPAHPPFASWRNSEAARDD---------------------------------RPSQQRQSLNGEWR 60 (1027)
T ss_pred cCCccCccccCCCCCCCCCCcCCcCCHHHHhhc---------------------------------cCCcceEecCCCcc
Confidence 468999999999999999999999999988742 13568999999999
Q ss_pred eeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEEEEEEcCCCCCCC-
Q 027098 98 FFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGR- 176 (228)
Q Consensus 98 F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YRr~F~lp~~w~gk- 176 (228)
|++.+.+..+|.+|+..++++ |++|.|||+|+++|++.++|+|++|||+.+||+||.+|++|||||+|+||++|.++
T Consensus 61 F~~~~~~~~~~~~~~~~~~~~--w~~I~VP~~w~~~G~~~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F~vp~~w~~~~ 138 (1027)
T PRK09525 61 FSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFVPEENPTGCYSLTFTVDESWLQSG 138 (1027)
T ss_pred eeECCChhhCcccccccCCCC--CcEeCCCCcHHhcCCCCCccccccCCCCCCCCCCCCcCCeEEEEEEEEeChhhcCCC
Confidence 999999999999999888865 99999999999999999999999999999999999889999999999999999987
Q ss_pred eEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098 177 RILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV 222 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~ 222 (228)
+++|+|+||++.++|||||++||+|+ |.++|+++|||.+|+.
T Consensus 139 rv~L~FeGV~~~a~VwvNG~~VG~~~----g~~~pfefDIT~~l~~ 180 (1027)
T PRK09525 139 QTRIIFDGVNSAFHLWCNGRWVGYSQ----DSRLPAEFDLSPFLRA 180 (1027)
T ss_pred eEEEEECeeccEEEEEECCEEEEeec----CCCceEEEEChhhhcC
Confidence 99999999999999999999999999 5667999999998753
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=6.9e-41 Score=340.80 Aligned_cols=168 Identities=32% Similarity=0.669 Sum_probs=154.2
Q ss_pred CCCCCCcccccccccCCCCCccccCCHHHHhhhhhhcccccccccCCCcccchhhHHhhhhccccCCCCCceeeccccce
Q 027098 18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWK 97 (228)
Q Consensus 18 ~~~wenp~v~~~n~~~~~a~~~~y~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~W~ 97 (228)
+++||||+|+++||||+||+|+||.++++|+... + ..|+.+++|||.|+
T Consensus 1 ~~~wen~~~~~~nr~~~~a~~~~~~~~~~a~~~~--~-----------------------------~~~~~~~~LnG~W~ 49 (1021)
T PRK10340 1 MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFA--R-----------------------------ETSSLFLLLSGQWN 49 (1021)
T ss_pred CCcccCccccCCCCCCCCCCcCCcCCHHHHhhcc--c-----------------------------ccCCceeecCccee
Confidence 4799999999999999999999999999987531 0 13568999999999
Q ss_pred eeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEEEEEEcCCCCCCCe
Q 027098 98 FFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRR 177 (228)
Q Consensus 98 F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YRr~F~lp~~w~gk~ 177 (228)
|++.+.+...|.+|+.+++ ++|++|.|||+|+++|++.|+|+|..|||+..||++|..|++|||||+|+||+.|+|++
T Consensus 50 F~~~~~~~~~~~~f~~~~~--~~W~~I~VP~~w~~~g~~~~~y~n~~y~~~~~~P~vp~~n~~g~Yrr~F~lp~~~~gkr 127 (1021)
T PRK10340 50 FHFFDHPLYVPEAFTSELM--SDWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRTFTLSDGWQGKQ 127 (1021)
T ss_pred EEEeCCccccccccccCCC--CCCcEeecCCChhhcCCCCcccccccccCCCCCCCCCCcCCeEEEEEEEEeCcccccCc
Confidence 9999988888999998887 67999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098 178 ILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV 222 (228)
Q Consensus 178 v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~ 222 (228)
++|+|+||+++++|||||++||+|+ |+++++++|||.+|+.
T Consensus 128 v~L~FeGV~s~a~VwvNG~~VG~~~----g~~~pfefDIT~~l~~ 168 (1021)
T PRK10340 128 TIIKFDGVETYFEVYVNGQYVGFSK----GSRLTAEFDISAMVKT 168 (1021)
T ss_pred EEEEECccceEEEEEECCEEecccc----CCCccEEEEcchhhCC
Confidence 9999999999999999999999999 5667999999988753
No 3
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.91 E-value=5.1e-24 Score=174.23 Aligned_cols=127 Identities=34% Similarity=0.599 Sum_probs=99.6
Q ss_pred CCceeeccccceeeecCCCCCCCcc-ccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEE
Q 027098 86 LPFVKSLSGHWKFFLASSPPDVPLN-FHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYR 164 (228)
Q Consensus 86 s~~~~sLnG~W~F~~~~~~~~~p~~-~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YR 164 (228)
|+..++|||.|+|+....+...+.. +....++++.|..|.||++|+...+......+ ..+......+.+|||
T Consensus 1 ~r~~~~Lng~W~f~~~~~~~~~~~~~~~~~~~~~~~w~~i~VP~~~~~~~~~~~~~~~-------~~~~~~~~~~~~wYr 73 (167)
T PF02837_consen 1 SRQVISLNGQWQFQPDDSPQDRPEGWFSWPDFDDSDWQPISVPGSWEDDLLRAFVPEN-------GDPELWDYSGYAWYR 73 (167)
T ss_dssp TTCEEESSEEEEEEEESSGGGSCTHHCCSTTCCCTTSEEEEESSEGTCCTSSTBTTST-------TGCCTSTCCSEEEEE
T ss_pred CCcEEECCccCCEEEeCCcccCccccccccccCcCCCeEEeCCCEeecCccceecccc-------ccccccccCceEEEE
Confidence 4678999999999999887766655 34457888999999999999987543200000 001111247899999
Q ss_pred EEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceeec
Q 027098 165 TYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQ 223 (228)
Q Consensus 165 r~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~~ 223 (228)
|+|+||++|++++++|+|+||++.+.|||||++||.|. +++.++++|||.+|+..
T Consensus 74 ~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~----~~~~~~~~dIt~~l~~g 128 (167)
T PF02837_consen 74 RTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE----GGYTPFEFDITDYLKPG 128 (167)
T ss_dssp EEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE----STTS-EEEECGGGSSSE
T ss_pred EEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC----CCcCCeEEeChhhccCC
Confidence 99999999999999999999999999999999999999 46668889998887543
No 4
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.85 E-value=5.1e-21 Score=186.18 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=95.4
Q ss_pred CCceeeccccceeeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEEE
Q 027098 86 LPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRT 165 (228)
Q Consensus 86 s~~~~sLnG~W~F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YRr 165 (228)
.+..++|||.|+|+..+.+...+++|+...++. +..|.||++|+.++.+.+.. ...+++||||
T Consensus 9 ~r~~~~Lng~W~F~~~~~~~~~~~~w~~~~~~~--~~~i~vP~~~~~~~~~~~~~---------------~~~G~~WYrr 71 (604)
T PRK10150 9 TREIKDLSGLWAFKLDRENCGIDQRWWESALPE--SRAMAVPGSFNDQFADADIR---------------NYVGDVWYQR 71 (604)
T ss_pred CeeeeecCCccceEECCccccccccccccCCCC--CcEecCCCchhhcccccccc---------------CCcccEEEEE
Confidence 457899999999999877766666777665543 35799999998876432211 1257899999
Q ss_pred EEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098 166 YFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV 222 (228)
Q Consensus 166 ~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~ 222 (228)
+|+||+.|+|++++|+|+||++.++|||||++||+|+ |+++++++|||.+|+.
T Consensus 72 ~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~----~~~~~f~~DIT~~l~~ 124 (604)
T PRK10150 72 EVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHK----GGYTPFEADITPYVYA 124 (604)
T ss_pred EEECCcccCCCEEEEEECcccceEEEEECCEEeeeEc----CCccceEEeCchhccC
Confidence 9999999999999999999999999999999999999 5777999999987754
No 5
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.3e-16 Score=157.46 Aligned_cols=132 Identities=36% Similarity=0.562 Sum_probs=118.0
Q ss_pred CCceeeccccceeeecCCCCCCCccccCCCCCCCCCeEecCCCcccccC-CCCceeccccccCCCCCCCCCCCCCceeEE
Q 027098 86 LPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHG-FDRPIYTNVVYPFPLDPPNVPAENPTGCYR 164 (228)
Q Consensus 86 s~~~~sLnG~W~F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G-~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YR 164 (228)
++..++|||.|.|++.+.+..+|.+|.....+++. .|.||++|++++ ++.++|+|..||++..+|.++..|+++.|.
T Consensus 9 ~~~~~~L~G~W~f~~~~~~~~~~~~w~~~~~s~~~--~i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~f 86 (808)
T COG3250 9 SREIKSLNGLWAFSLDDEPCAVPQRWPESLLSESR--AIAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVPAGNRIGLYF 86 (808)
T ss_pred ccceeccCCceeEEecCCccccccccchhhhhhcc--CccCCccHhhcCccCcceecceeeeecccCCccccCCceEEEE
Confidence 45689999999999999999999999887766654 899999999999 999999999999999999998889999999
Q ss_pred EEEEcCCCC-CCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceeec
Q 027098 165 TYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQ 223 (228)
Q Consensus 165 r~F~lp~~w-~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~~ 223 (228)
+.|++.+.| .+.+++|+|+|+.+.++|||||+.||++.+ ...+.++|||.+++-.
T Consensus 87 ~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~~~~~----~~~~~~~dis~~~~~~ 142 (808)
T COG3250 87 DAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVGGGKD----SRITVEFDISPNLQTG 142 (808)
T ss_pred eccccceeEEeCCeEEEEecCceeEEEEeeccceecCCcc----eEEEEeeccccccccC
Confidence 999988876 566999999999999999999999999995 5568889999887553
No 6
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.3e-08 Score=89.71 Aligned_cols=116 Identities=24% Similarity=0.416 Sum_probs=85.8
Q ss_pred CCCceeeccccceeeecCCCCCCC---ccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCce
Q 027098 85 GLPFVKSLSGHWKFFLASSPPDVP---LNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTG 161 (228)
Q Consensus 85 ~s~~~~sLnG~W~F~~~~~~~~~p---~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g 161 (228)
.++...+|+|-|.|....+....+ ..|+...+ ..-..+.||++++..|-+-+.. +.-+.-
T Consensus 28 pire~~~ldgLw~f~r~~~~~~~~g~~~~w~~~~~--~~t~~mpvpss~nDi~~d~~lr---------------dfv~~~ 90 (297)
T KOG2024|consen 28 PIREVKSLDGLWSFVRDSNQNRLQGILEQWENKES--GPTQDMPVPSSFNDIGQDWRLR---------------DFVGLV 90 (297)
T ss_pred cchhhhhhCcchhcccCcccccchhHHhhhccccc--ccccccccccchhccccCCccc---------------cceeee
Confidence 467788999999999877644332 34443222 1223578999888766432110 124667
Q ss_pred eEEEEEEcCCCC---CCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEecccee
Q 027098 162 CYRTYFHIPKEW---QGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILM 221 (228)
Q Consensus 162 ~YRr~F~lp~~w---~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~ 221 (228)
||.|++.+|+.| .+++++|||..+++.+.|||||..+-.|+ |...|++-+|.-.+.
T Consensus 91 wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~----gg~lP~~~~is~~~~ 149 (297)
T KOG2024|consen 91 WYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHE----GGHLPLEPDISALVF 149 (297)
T ss_pred EEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccc----cCccccchhhhhhhh
Confidence 999999999998 47899999999999999999999999999 455599988886553
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=2.1e-06 Score=82.73 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=75.9
Q ss_pred CceeeccccceeeecCCCCCCCccccCCCCCCCCCeEecCCCccccc----C-CCCceeccccccCCCCCCCCCCCCCce
Q 027098 87 PFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMH----G-FDRPIYTNVVYPFPLDPPNVPAENPTG 161 (228)
Q Consensus 87 ~~~~sLnG~W~F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~----G-~~~p~Y~N~~ypf~~~pp~vp~~n~~g 161 (228)
...++|.|.|.|.-....-.. +-.|||+.... | +++|.|.-. ..+-..|. ..-+
T Consensus 20 ~~t~~l~gnw~~~~~n~t~~~---------------~g~vpg~i~s~l~~~gii~~~~~~~n----~ln~kwia--~d~w 78 (867)
T KOG2230|consen 20 YNTLVLAGNWEFSSSNKTVNG---------------TGTVPGDIYSDLYASGIIDNPLFGEN----HLNLKWIA--EDDW 78 (867)
T ss_pred eeeEEEecceEEecCCCceec---------------CCCCCchHhHHHHhcccccCcccccc----ccceeEEe--ccCc
Confidence 367789999999865432211 34788887543 4 355655311 01112222 2236
Q ss_pred eEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEecccee
Q 027098 162 CYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILM 221 (228)
Q Consensus 162 ~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~ 221 (228)
.|.|+|.|=+--+-..++|.+||||+.+.||+||+.|+.+. .++.+..++||+.+.
T Consensus 79 tysr~frl~dl~~~~~~~l~ie~vdtia~v~~n~~~v~~s~----n~f~~y~~~vt~ii~ 134 (867)
T KOG2230|consen 79 TYSRKFRLIDLDDTVGAFLEIESVDTIATVYVNGQKVLHSR----NQFLPYHVNVTDIIA 134 (867)
T ss_pred cceeeeEEEEccccccceEEEeecceeEEEEEccEEEeecc----ccceeEEEeEEEEec
Confidence 79999988443334578999999999999999999999998 577788888888764
No 8
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.00077 Score=68.43 Aligned_cols=58 Identities=29% Similarity=0.326 Sum_probs=52.5
Q ss_pred CceeEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccce
Q 027098 159 PTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVIL 220 (228)
Q Consensus 159 ~~g~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V 220 (228)
...+|.++|.+|....++++.|.|++++.-+.||+||+.++.++ |++++|+++|+-.+
T Consensus 63 ~~~~y~~~~~~~~~~~~~~~~l~f~~~~~~~~v~~ng~~~l~~e----g~~~~fev~vng~~ 120 (808)
T COG3250 63 TNVWYPREVFPPKVPAGNRIGLYFDAVDTLAKVWLNGQEVLEFQ----GVYTPFEVDVTGPY 120 (808)
T ss_pred cceeeeecccCCccccCCceEEEEeccccceeEEeCCeEEEEec----CceeEEEEeeccce
Confidence 34679999999998889999999999999999999999999999 78889999999433
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=96.50 E-value=0.01 Score=46.00 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCceeEEEEEEcCCCCCCCeEE-EEe-CCcCceeEEEEcCEEeeeEe
Q 027098 158 NPTGCYRTYFHIPKEWQGRRIL-LHF-EAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w~gk~v~-L~F-eGV~s~~~VwVNG~~VG~s~ 202 (228)
.+..|||.+|..... +..+. |.. +|-...+.|||||+++|...
T Consensus 34 ~g~~~Yrg~F~~~~~--~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQ--DTSLTPLNIQGGNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp SCEEEEEEEEETTTE--EEEEE-EEECSSTTEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEEEeCCCc--ceeEEEEeccCCCceEEEEEECCEEeeeec
Confidence 688999999964221 13444 444 37788899999999999977
No 10
>PLN03059 beta-galactosidase; Provisional
Probab=94.00 E-value=0.16 Score=51.98 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCceeEEEEEEcCCCC----CCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 158 NPTGCYRTYFHIPKEW----QGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w----~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
.+..|||++|.+...- .+.+..|++..+...++|||||+++|+..+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~ 518 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYG 518 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEe
Confidence 5678999999997652 256788999999999999999999998654
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=88.02 E-value=0.85 Score=46.85 Aligned_cols=41 Identities=29% Similarity=0.571 Sum_probs=34.1
Q ss_pred CCceeEEEEEEcCCCCCCCe-EEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 158 NPTGCYRTYFHIPKEWQGRR-ILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w~gk~-v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
.+..||+.+|++|+ +.. ++|.+.|-. ...|||||+-||.--
T Consensus 618 ~p~twYK~~Fd~p~---g~Dpv~LDm~gmG-KG~aWVNG~nIGRYW 659 (840)
T PLN03059 618 QPLTWYKTTFDAPG---GNDPLALDMSSMG-KGQIWINGQSIGRHW 659 (840)
T ss_pred CCceEEEEEEeCCC---CCCCEEEecccCC-CeeEEECCccccccc
Confidence 45899999999986 455 999999955 789999999999543
No 12
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=78.71 E-value=3.6 Score=30.16 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=29.1
Q ss_pred CCceeEEEEEEcCCCC-CCCeEEEEeCCcCceeEEEE--cCEEeee
Q 027098 158 NPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWI--NGVPVGY 200 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w-~gk~v~L~FeGV~s~~~VwV--NG~~VG~ 200 (228)
|..-.|+|.|..|+.. ..+++.|+|.+ +....|-- ||+.++.
T Consensus 38 ~~i~i~~R~F~F~Dg~e~~~~~~l~f~~-~~V~~i~~~~~g~~l~~ 82 (85)
T PF14814_consen 38 NRIEIYTRGFDFPDGQEPARRVRLTFSG-GRVSSIQDLDNGRDLGL 82 (85)
T ss_dssp TEEEEEE--EEETTCEE--EEEEEEEET-TEEEEEEETTTTEE-SS
T ss_pred CEEEEEECCCCCCCCCccCEEEEEEECC-CEEEEEEEcCCCCccCe
Confidence 5677899999999876 45789999999 76777765 5776653
No 13
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=75.95 E-value=9.3 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCee---eeEEEEecc
Q 027098 174 QGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQ---RSLKFQITV 218 (228)
Q Consensus 174 ~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~---~~~~~dIT~ 218 (228)
+...+.|...|-....+-||||+++|.....-.=.+ .+|++.|+.
T Consensus 30 ~~~~l~l~a~~~~~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 30 ERQPLVLKAAGGRGPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred ccceEEEEEeCCCCcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 467888888888889999999999987665211111 357777766
No 14
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=75.01 E-value=2.8 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=18.5
Q ss_pred EEEeCCcCceeEEEEcCEEeeeEe
Q 027098 179 LLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 179 ~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
.|.+...-..+.|||||+++|.+.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp 26 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP 26 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc
Confidence 355566667899999999999654
No 15
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=74.11 E-value=2.6 Score=29.45 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=12.3
Q ss_pred EEEcCEEeeeEec
Q 027098 191 AWINGVPVGYRSV 203 (228)
Q Consensus 191 VwVNG~~VG~s~~ 203 (228)
|+|||..+|.+++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999999998
No 16
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=72.77 E-value=4.7 Score=40.29 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=34.1
Q ss_pred CCceeEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
.|.-||. .|++|+. ...++|.+.|-. ...|||||+-||..--
T Consensus 556 ~P~~w~k-~f~~p~g--~~~t~Ldm~g~G-KG~vwVNG~niGRYW~ 597 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSG--SEPTALDMNGWG-KGQVWVNGQNIGRYWP 597 (649)
T ss_pred CCeEEEE-EecCCCC--CCCeEEecCCCc-ceEEEECCcccccccC
Confidence 4667787 9999986 348999999954 7899999999996543
No 17
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=66.48 E-value=18 Score=27.71 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=15.2
Q ss_pred CceeEEEEcCEEeeeEec
Q 027098 186 DSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 186 ~s~~~VwVNG~~VG~s~~ 203 (228)
.-...|||||+.||....
T Consensus 40 ~~~~~v~vdg~~ig~l~~ 57 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKN 57 (117)
T ss_pred cccceEEECCEEEEEeCC
Confidence 557889999999998765
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=64.29 E-value=12 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=22.1
Q ss_pred eEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 177 RILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
+|.+.+++......+||||++++....
T Consensus 65 hva~v~d~~~g~~~lYvnG~~~~~~~~ 91 (133)
T smart00560 65 HLAGVYDGGAGKLSLYVNGVEVATSET 91 (133)
T ss_pred EEEEEEECCCCeEEEEECCEEcccccc
Confidence 777888887788999999999986543
No 19
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=62.59 E-value=18 Score=36.27 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.9
Q ss_pred eEEEEeC-CcCceeEEEEcCEEeeeEecc----------cCCeeeeEEEEeccceeecc
Q 027098 177 RILLHFE-AVDSAFCAWINGVPVGYRSVR----------IVGYQRSLKFQITVILMVQT 224 (228)
Q Consensus 177 ~v~L~Fe-GV~s~~~VwVNG~~VG~s~~~----------itG~~~~~~~dIT~~V~~~~ 224 (228)
...|.+. ++..+.+|||||+++|...+. ..+ ++.++|.|..++...+
T Consensus 434 ~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~-l~~g~n~l~iL~~~~G 491 (649)
T KOG0496|consen 434 TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVG-LKAGENKLALLSENVG 491 (649)
T ss_pred CceEeecccccceEEEEECCEEeeeEeccccceeEEeecccc-cccCcceEEEEEEecC
Confidence 5567777 999999999999999988752 222 3355566666554443
No 20
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=59.68 E-value=30 Score=26.55 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCceeEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
+-...++-.|.+|++ ....+.+. ++..+.|||||+.|..+..
T Consensus 45 ~~~~~~~G~~~~~~~---G~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 45 NFSVRWTGYFKPPET---GTYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp SEEEEEEEEEEESSS---EEEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred eEEEEEEEEEecccC---ceEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 445668889998875 45666666 5667999999999987663
No 21
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=59.20 E-value=27 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCceeEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 158 NPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 158 n~~g~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
+-...++-.|.+|+. | ...+.+. .+..+.+||||+.|-.+.
T Consensus 43 ~f~~~~~g~i~~~~~--G-~y~f~~~-~~~~~~l~Idg~~vid~~ 83 (136)
T smart00758 43 NFSVRWTGYLKPPED--G-EYTFSIT-SDDGARLWIDGKLVIDNW 83 (136)
T ss_pred cEEEEEEEEEECCCC--c-cEEEEEE-cCCcEEEEECCcEEEcCC
Confidence 445568888888864 4 4667775 466789999999998653
No 22
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=52.25 E-value=27 Score=34.36 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=38.0
Q ss_pred EEEEEcCCC---CCCCeEEEEeCCc--------CceeEEEEcCEEeeeEecc-------------cCCeeeeEEEEeccc
Q 027098 164 RTYFHIPKE---WQGRRILLHFEAV--------DSAFCAWINGVPVGYRSVR-------------IVGYQRSLKFQITVI 219 (228)
Q Consensus 164 Rr~F~lp~~---w~gk~v~L~FeGV--------~s~~~VwVNG~~VG~s~~~-------------itG~~~~~~~dIT~~ 219 (228)
+-.|.+|.+ |.++.+.|++... .+...|+|||++|+.-.-. |.+++.++.|.|+..
T Consensus 327 ~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~~~N~l~~~ 406 (605)
T PF03170_consen 327 SFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLPGRNQLQFE 406 (605)
T ss_pred eeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcCCCcEEEEE
Confidence 446888986 5677777776543 5668899999999864421 445555666665554
Q ss_pred e
Q 027098 220 L 220 (228)
Q Consensus 220 V 220 (228)
.
T Consensus 407 f 407 (605)
T PF03170_consen 407 F 407 (605)
T ss_pred E
Confidence 4
No 23
>PRK10824 glutaredoxin-4; Provisional
Probab=51.65 E-value=2.2 Score=33.38 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=25.8
Q ss_pred EEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 167 FHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 167 F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
++|..+..-+.....+-|-.+.-+|||||++||.+.+
T Consensus 50 idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~dd 86 (115)
T PRK10824 50 VDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDI 86 (115)
T ss_pred EEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHH
Confidence 4554433223444555688899999999999998765
No 24
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.08 E-value=8.4 Score=29.72 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.1
Q ss_pred CceeEEEEcCEEeeeEe
Q 027098 186 DSAFCAWINGVPVGYRS 202 (228)
Q Consensus 186 ~s~~~VwVNG~~VG~s~ 202 (228)
-+.-++||||.+||-+.
T Consensus 70 PT~PQLyi~GEfvGG~D 86 (105)
T COG0278 70 PTFPQLYVNGEFVGGCD 86 (105)
T ss_pred CCCceeeECCEEeccHH
Confidence 45668899999999875
No 25
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=48.88 E-value=14 Score=24.28 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=10.7
Q ss_pred eeEEEEcCEEeee
Q 027098 188 AFCAWINGVPVGY 200 (228)
Q Consensus 188 ~~~VwVNG~~VG~ 200 (228)
..+|||||+.|=.
T Consensus 20 I~~V~VNG~~vv~ 32 (48)
T PF07908_consen 20 IDYVFVNGQIVVE 32 (48)
T ss_dssp EEEEEETTEEEEC
T ss_pred EEEEEECCEEEEE
Confidence 5689999999854
No 26
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=44.60 E-value=32 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred eEEEEeCC-cCceeEEEEcCEEeeeEec
Q 027098 177 RILLHFEA-VDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 177 ~v~L~FeG-V~s~~~VwVNG~~VG~s~~ 203 (228)
.+.+++.. -+....||+||++|....+
T Consensus 158 ~i~~~~s~~~~G~~~vw~nG~~v~~~~g 185 (224)
T PF14099_consen 158 VIHVKWSPDSDGFLEVWLNGKLVVDYKG 185 (224)
T ss_dssp EEEEEE-CCCTEEEEEEECCEECCEEEE
T ss_pred EEEEEECCCCCEEEEEEECCEEEEEEeC
Confidence 45555554 5788999999999988874
No 27
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=15 Score=28.14 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.1
Q ss_pred eEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 177 RILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
+....+.|..+.-.|+|||++||...+
T Consensus 57 ~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 57 KALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred HHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 334456677789999999999998765
No 28
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=40.02 E-value=37 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=16.2
Q ss_pred eEEEEeCCcCceeEEEEcCEEee
Q 027098 177 RILLHFEAVDSAFCAWINGVPVG 199 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG 199 (228)
.+.|.. +...+++|+|||+.|=
T Consensus 34 ~v~~~~-~~~G~FEV~v~g~lI~ 55 (76)
T PF10262_consen 34 EVELSP-GSTGAFEVTVNGELIF 55 (76)
T ss_dssp EEEEEE-ESTT-EEEEETTEEEE
T ss_pred EEEEEe-ccCCEEEEEEccEEEE
Confidence 555566 5588999999999874
No 29
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=38.91 E-value=35 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=18.7
Q ss_pred eEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 177 RILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
++.+.++ .+...+||||+.++....
T Consensus 89 ~l~~~~~--~~~~~lyvnG~~~~~~~~ 113 (157)
T PF13385_consen 89 HLALTYD--GSTVTLYVNGELVGSSTI 113 (157)
T ss_dssp EEEEEEE--TTEEEEEETTEEETTCTE
T ss_pred EEEEEEE--CCeEEEEECCEEEEeEec
Confidence 5666666 455999999999987653
No 30
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=37.01 E-value=28 Score=26.21 Aligned_cols=20 Identities=40% Similarity=0.893 Sum_probs=18.2
Q ss_pred CCeEEEEeCCcCceeEEEEc
Q 027098 175 GRRILLHFEAVDSAFCAWIN 194 (228)
Q Consensus 175 gk~v~L~FeGV~s~~~VwVN 194 (228)
|+++.|||+|-+..+..|++
T Consensus 55 g~~l~v~~dg~~~~~D~W~~ 74 (96)
T smart00561 55 GYRLLLHFDGWDDKYDFWCD 74 (96)
T ss_pred CCEEEEEEccCCCcCCEEEE
Confidence 78999999999998888886
No 31
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=35.12 E-value=52 Score=27.04 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=24.3
Q ss_pred ceeEEEEcCEEeeeEecccCCee-eeEEEEeccceeecccc
Q 027098 187 SAFCAWINGVPVGYRSVRIVGYQ-RSLKFQITVILMVQTRR 226 (228)
Q Consensus 187 s~~~VwVNG~~VG~s~~~itG~~-~~~~~dIT~~V~~~~~~ 226 (228)
....|++||++|+.++.. .+ ..|..++...+.+++.|
T Consensus 39 ~~ikl~~N~k~V~~T~~~---~l~~dF~v~f~~~f~v~i~~ 76 (168)
T PF15625_consen 39 YYIKLFFNDKEVSRTRSR---PLWSDFRVHFNEIFNVQITR 76 (168)
T ss_pred EEEEEEECCEEEEeeeeE---ecCCCeEEeccCEEEEEEec
Confidence 345689999999988852 11 34566666666665544
No 32
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=33.41 E-value=60 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 174 QGRRILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 174 ~gk~v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
.|+...|.|.--+..+.|+|||+.+..=.
T Consensus 81 ~g~~F~i~I~~~~~~f~I~vng~~~~~F~ 109 (133)
T PF00337_consen 81 PGQPFEIRIRVEEDGFKIYVNGKHFCSFP 109 (133)
T ss_dssp TTSEEEEEEEEESSEEEEEETTEEEEEEE
T ss_pred CCceEEEEEEEecCeeEEEECCeEEEEee
Confidence 57777777777799999999999987543
No 33
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=30.65 E-value=74 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 174 QGRRILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 174 ~gk~v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
.|+...|.|---...+.|+|||+.+..=.
T Consensus 76 ~g~~F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 76 PGQPFELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred CCCeEEEEEEEcCCEEEEEECCEeEEEec
Confidence 47888888888899999999999886543
No 34
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=28.78 E-value=1.5e+02 Score=29.16 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=30.3
Q ss_pred eeEEEEEEcCCCCCCCeEEEEeCCc--------CceeEEEEcCEEeeeEec
Q 027098 161 GCYRTYFHIPKEWQGRRILLHFEAV--------DSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 161 g~YRr~F~lp~~w~gk~v~L~FeGV--------~s~~~VwVNG~~VG~s~~ 203 (228)
+...-.|.||.+|.-+...|+|..- .|.-.|+|||+.||.-.-
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s~~l 79 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGSIPL 79 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeEEEec
Confidence 4456668899888666555554432 467899999999997653
No 35
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=27.45 E-value=99 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.5
Q ss_pred ceeEEEEcCEEeeeEec
Q 027098 187 SAFCAWINGVPVGYRSV 203 (228)
Q Consensus 187 s~~~VwVNG~~VG~s~~ 203 (228)
....|||||+.|....+
T Consensus 139 ~~i~v~vnG~~v~~~~d 155 (185)
T PF06439_consen 139 NRITVWVNGKPVADFTD 155 (185)
T ss_dssp TEEEEEETTEEEEEEET
T ss_pred CEEEEEECCEEEEEEEc
Confidence 34789999999998887
No 36
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=27.10 E-value=91 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 174 QGRRILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 174 ~gk~v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
.|+...|.|---...+.|+|||+.+..=.
T Consensus 75 ~g~~F~l~i~~~~~~f~i~vng~~~~~f~ 103 (128)
T smart00276 75 PGQPFDLTIIVQPDHFQIFVNGVHITTFP 103 (128)
T ss_pred CCCEEEEEEEEcCCEEEEEECCEeEEEec
Confidence 47777788888888999999999987543
No 37
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=26.03 E-value=76 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.5
Q ss_pred eEEEEeCCcCceeEEEEcCEEeeeEe
Q 027098 177 RILLHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 177 ~v~L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
++.+..++......|||||+.++...
T Consensus 94 hv~~t~d~~~g~~~lyvnG~~~~~~~ 119 (201)
T cd00152 94 HICVTWESTSGIAELWVNGKLSVRKS 119 (201)
T ss_pred EEEEEEECCCCcEEEEECCEEecccc
Confidence 67778888888899999999987553
No 38
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=25.84 E-value=80 Score=23.01 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=16.2
Q ss_pred ceeEEEEEEcCCCCCCCeEEEEe
Q 027098 160 TGCYRTYFHIPKEWQGRRILLHF 182 (228)
Q Consensus 160 ~g~YRr~F~lp~~w~gk~v~L~F 182 (228)
.+-|+|.|.||+.-.-..+.-.+
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEe
Confidence 47899999999876544444333
No 39
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=25.60 E-value=73 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=14.9
Q ss_pred EEEEEEcCCCCCCCeEEEEe
Q 027098 163 YRTYFHIPKEWQGRRILLHF 182 (228)
Q Consensus 163 YRr~F~lp~~w~gk~v~L~F 182 (228)
|+|+|.||+.-....+.=.|
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~ 74 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSL 74 (86)
T ss_pred EEEEEECCCCCChHHeEEEe
Confidence 99999999986655555444
No 40
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=25.52 E-value=12 Score=27.91 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 166 YFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 166 ~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
.++|.++.+-+.......|..+.-.|+|||++||...+
T Consensus 46 ~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~dd 83 (97)
T TIGR00365 46 YVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDI 83 (97)
T ss_pred EEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHH
Confidence 45665443323333344677889999999999998764
No 41
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=25.12 E-value=1.8e+02 Score=20.56 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEE-eccce
Q 027098 162 CYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQ-ITVIL 220 (228)
Q Consensus 162 ~YRr~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~d-IT~~V 220 (228)
-|. ..+|.+. ..+.|.....+..+.|.|||..+.....+..=-+..|.+. |+..|
T Consensus 15 ~Y~--~~V~~~~--~~v~v~a~~~~~~a~v~vng~~~~~~~~~~~i~L~~G~n~~i~i~V 70 (88)
T PF12733_consen 15 EYT--VTVPNDV--DSVTVTATPEDSGATVTVNGVPVNSGGYSATIPLNEGENTVITITV 70 (88)
T ss_pred EEE--EEECCCc--eEEEEEEEECCCCEEEEEcCEEccCCCcceeeEccCCCceEEEEEE
Confidence 355 5566653 4688888888999999999998743110000133456555 65555
No 42
>PTZ00062 glutaredoxin; Provisional
Probab=24.82 E-value=17 Score=31.14 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEec
Q 027098 165 TYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 165 r~F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~ 203 (228)
.+++|.++.+.++....+.|-.+.-.|+|||++||...+
T Consensus 146 ~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~ 184 (204)
T PTZ00062 146 ETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDI 184 (204)
T ss_pred EEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHH
Confidence 478887664444555567788888999999999998764
No 43
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=24.27 E-value=1.3e+02 Score=24.80 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCCCC--eEEEEeCCc--CceeEEEEcCEEeee
Q 027098 161 GCYRTYFHIPKEWQGR--RILLHFEAV--DSAFCAWINGVPVGY 200 (228)
Q Consensus 161 g~YRr~F~lp~~w~gk--~v~L~FeGV--~s~~~VwVNG~~VG~ 200 (228)
+-.+-.|+|++.-.++ .+.|-+-+. .....|.||| .++.
T Consensus 63 ~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg-~~~~ 105 (167)
T PF14683_consen 63 GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNG-WSGP 105 (167)
T ss_dssp --EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETT-EE--
T ss_pred CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcC-ccCC
Confidence 5677788888765333 334444443 4567899999 5554
No 44
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=23.97 E-value=1.8e+02 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCeEEEEeC--------CcCceeEEEEcCEEeeeEe
Q 027098 164 RTYFHIPKEWQGRRILLHFE--------AVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 164 Rr~F~lp~~w~gk~v~L~Fe--------GV~s~~~VwVNG~~VG~s~ 202 (228)
+-.|.+|.+|.-..+.|+|. --.|.-.|.|||+.||.-.
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~s~p 130 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMGTLP 130 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeEEEe
Confidence 56688888875555555554 2347889999999998654
No 45
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=23.60 E-value=1.1e+02 Score=22.29 Aligned_cols=21 Identities=5% Similarity=0.268 Sum_probs=15.6
Q ss_pred eeEEEEEEcCCCCCCCeEEEE
Q 027098 161 GCYRTYFHIPKEWQGRRILLH 181 (228)
Q Consensus 161 g~YRr~F~lp~~w~gk~v~L~ 181 (228)
..|+|+|.||..-.-..+-=.
T Consensus 50 r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 50 RSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred EEEEEEEECCCCcchheEEEE
Confidence 379999999988765555444
No 46
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=22.91 E-value=1e+02 Score=22.27 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=15.7
Q ss_pred eeEEEEEEcCCCCCCCeEEEEe
Q 027098 161 GCYRTYFHIPKEWQGRRILLHF 182 (228)
Q Consensus 161 g~YRr~F~lp~~w~gk~v~L~F 182 (228)
.-|+|+|.||+.-....|.=.|
T Consensus 50 ~eF~R~~~LP~~vd~~~v~A~~ 71 (83)
T cd06476 50 REFTRTYILPMDVDPLLVRASL 71 (83)
T ss_pred EEEEEEEECCCCCChhhEEEEe
Confidence 3499999999876555555444
No 47
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=22.82 E-value=2e+02 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=26.7
Q ss_pred EEEeCC-cCceeEEEEcCEEeeeEecccCCeee-eEEEEecccee
Q 027098 179 LLHFEA-VDSAFCAWINGVPVGYRSVRIVGYQR-SLKFQITVILM 221 (228)
Q Consensus 179 ~L~FeG-V~s~~~VwVNG~~VG~s~~~itG~~~-~~~~dIT~~V~ 221 (228)
+|.++. ++....|+|||+.++..+- |... .+-+.||..+.
T Consensus 86 VI~Ld~~~~epv~V~Vng~~if~Gev---Gvv~~k~AVrIteii~ 127 (137)
T PRK07963 86 VVALDGLAGEPLDILINGYLIAQGEV---VVVADKYGVRITDIIT 127 (137)
T ss_pred EEEeCCCCCCCEEEEECCEEEEEEEE---EEECCEEEEEEEEecC
Confidence 444454 5678999999999999885 3322 34566776653
No 48
>PRK08035 type III secretion system protein SsaQ; Validated
Probab=22.34 E-value=1.7e+02 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=26.2
Q ss_pred EEEEEcCCCC-CCCeEEEEeCC-cCceeEEEEcCEEeeeEec
Q 027098 164 RTYFHIPKEW-QGRRILLHFEA-VDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 164 Rr~F~lp~~w-~gk~v~L~FeG-V~s~~~VwVNG~~VG~s~~ 203 (228)
|+++.|-+-. -+.--.|.+++ +.....|++||+.||..+-
T Consensus 261 r~~l~l~eL~~L~~GsVl~L~~~~~~~VdI~vNG~~ia~GEl 302 (323)
T PRK08035 261 RLSLPIGQLRQLAVGDVLPVGGCFYPEVTIRLNGRIIGQGEL 302 (323)
T ss_pred cEEeeHHHHhcCCCCCEEEcCCCCCCceEEEECCEEEEEEEE
Confidence 4555554322 13344666664 4667999999999999773
No 49
>PRK06789 flagellar motor switch protein; Validated
Probab=22.24 E-value=1e+02 Score=22.31 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=15.7
Q ss_pred cCceeEEEEcCEEeeeEec
Q 027098 185 VDSAFCAWINGVPVGYRSV 203 (228)
Q Consensus 185 V~s~~~VwVNG~~VG~s~~ 203 (228)
+...-.|++||+.+|..+-
T Consensus 40 ~~epvdI~vNg~lia~GEv 58 (74)
T PRK06789 40 TKNTVRLMLENEEIGTGKI 58 (74)
T ss_pred CCCCEEEEECCEEEeEEeE
Confidence 4557789999999999874
No 50
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=22.00 E-value=1.5e+02 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.4
Q ss_pred eEEEEeCC---cCceeEEEE-cCEEeeeEec
Q 027098 177 RILLHFEA---VDSAFCAWI-NGVPVGYRSV 203 (228)
Q Consensus 177 ~v~L~FeG---V~s~~~VwV-NG~~VG~s~~ 203 (228)
.+.|.+++ +.....|+. ||+.||....
T Consensus 22 lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS 52 (95)
T PF08669_consen 22 LVGLTLDGDAPPRGGEPVYDEDGKPVGRVTS 52 (95)
T ss_dssp EEEEEESSSS--STTCEEEETTTEEEEEEEE
T ss_pred EEEEEECCccCCCCCCEEEECCCcEEeEEEE
Confidence 44555554 677889999 9999997654
No 51
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=21.62 E-value=1e+02 Score=21.60 Aligned_cols=20 Identities=25% Similarity=0.733 Sum_probs=17.0
Q ss_pred CCeEEEEeCCcCceeEEEEc
Q 027098 175 GRRILLHFEAVDSAFCAWIN 194 (228)
Q Consensus 175 gk~v~L~FeGV~s~~~VwVN 194 (228)
|.++.|+|+|-+.....|+.
T Consensus 24 g~~l~v~~dg~~~~~d~w~~ 43 (73)
T PF02820_consen 24 GGRLLVRYDGWDDDYDFWCH 43 (73)
T ss_dssp TTEEEEEETTSTGGGEEEEE
T ss_pred CCEEEEEEcCCCCCccEEEE
Confidence 66799999999988887774
No 52
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=21.57 E-value=2.4e+02 Score=19.83 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.6
Q ss_pred CcCceeEEEEcCEEeeeE
Q 027098 184 AVDSAFCAWINGVPVGYR 201 (228)
Q Consensus 184 GV~s~~~VwVNG~~VG~s 201 (228)
.-+..+.|||++.+||.-
T Consensus 25 k~~dsaEV~~g~EfiGvi 42 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVI 42 (63)
T ss_pred CCCCceEEEeCCEEEEEE
Confidence 335689999999999953
No 53
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=21.33 E-value=91 Score=22.59 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=15.3
Q ss_pred eEEEEEEcCCCCCCCeEEEEe
Q 027098 162 CYRTYFHIPKEWQGRRILLHF 182 (228)
Q Consensus 162 ~YRr~F~lp~~w~gk~v~L~F 182 (228)
-|+|.|.||++-....+.=.|
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~ 71 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSL 71 (84)
T ss_pred EEEEEEECCCCCChHHcEEEe
Confidence 499999999987655555444
No 54
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=21.11 E-value=90 Score=25.83 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEeCCcCceeEEEEcCEEeeeEe
Q 027098 180 LHFEAVDSAFCAWINGVPVGYRS 202 (228)
Q Consensus 180 L~FeGV~s~~~VwVNG~~VG~s~ 202 (228)
+.-.|..+.|.||.|++.+|...
T Consensus 60 I~~~g~htGF~Vwsna~q~gg~p 82 (156)
T PRK15222 60 VTYHGSHSGFRVWSDEQKAGNTP 82 (156)
T ss_pred EEeCCCceeEEEEecccccCCCc
Confidence 44888899999999999998554
No 55
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.26 E-value=1.4e+02 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCeEEEEeCCcCceeEEEEcCEEeeeE
Q 027098 175 GRRILLHFEAVDSAFCAWINGVPVGYR 201 (228)
Q Consensus 175 gk~v~L~FeGV~s~~~VwVNG~~VG~s 201 (228)
++.+.|+++-.. +..|.+||+.++..
T Consensus 37 ~~~~~i~iGna~-~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 37 KEPFRIRIGNAG-AVEVTVNGKPVDLL 62 (77)
T ss_pred CCCEEEEEeCCC-cEEEEECCEECCCC
Confidence 567889998866 67999999999983
Done!