BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027099
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 43 GYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEE 93
G DSP F K + +C+E+D + ++ DL K+K+ ++EE
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAV-----MDLKKKKIRSLSEE 106
>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER 200
A QS+ S R+ E+ GT I+ + EQR+ L++ + + ++ + S +LR + R
Sbjct: 7 ATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 18 AKKLLLRARDGVEKLERLESSTSTGGYDSPELSF----AVKKDISQIQSLCVEMDRLWRS 73
A+++ + R G L L S GG ++P LSF V D S + + E+ W
Sbjct: 249 AEQMYGKYRWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGDKSLVNLIAHELAHSWSG 308
Query: 74 --IAAKSQRDLW 83
+ +S RDLW
Sbjct: 309 NLVTNESWRDLW 320
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 14 IYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRS 73
+YQ+ K R + G+E +E +T + + F + +I+ ++ VE + ++
Sbjct: 66 VYQAIKDG--RLKPGMEIIESTSGNTGIALCQAGAV-FGYRVNIAMPSTMSVERQMIMKA 122
Query: 74 IAAKSQRDLWKRKVEQVAEEAESL-KESLDKYFLRNQ 109
A+ K+ + EE + KE+ KYF+ NQ
Sbjct: 123 FGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQ 159
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 14 IYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRS 73
+YQ+ K R + G+E +E +T + + F + +I+ ++ VE + ++
Sbjct: 65 VYQAIKDG--RLKPGMEIIESTSGNTGIALCQAGAV-FGYRVNIAMPSTMSVERQMIMKA 121
Query: 74 IAAKSQRDLWKRKVEQVAEEAESL-KESLDKYFLRNQ 109
A+ K+ + EE + KE+ KYF+ NQ
Sbjct: 122 FGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQ 158
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 66 EMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA 125
EM L ++A R RK+E+ + E LKES D Y + + +I E R + A
Sbjct: 119 EMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDA 178
Query: 126 NGESSHILRIFDEEAQAMQSVRNSSRMLQESFA 158
E +L + + + S+ + ++ FA
Sbjct: 179 FKEVDSVLS---KAVRGITSIVVTPAVINVDFA 208
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 69 RLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGE 128
++W +++S + K Q + ESL+E L+ F Q AR+ A G +
Sbjct: 108 QIWPCESSRSHTTIAKYAQYQASSFQESLQEELEVLF---QGPTKAARKSAPATGGGSSG 164
Query: 129 SSHILRI 135
S HI++
Sbjct: 165 SHHIIKF 171
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 94 AESLKESLDKYFLRNQRRINEARERAELLGRAN--GESSHILRIFDE----EAQAMQSVR 147
A S++ L+++ +R +I A + + S ++ + D A A Q+V
Sbjct: 268 AGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVT 327
Query: 148 NSSRMLQESFATGT---------AILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI 198
+ +L S T A+L +++ +L +AQR DVL G N V+ L
Sbjct: 328 DGVTVLTGSVVANTEADASGELSAVLVATLDEQRNLGEAQRFEADVLAVSGGFNPVVHLH 387
Query: 199 ERRNRVDTW 207
+R W
Sbjct: 388 SQRQGKLNW 396
>pdb|1XAW|A Chain A, Crystal Structure Of The Cytoplasmic Distal C-Terminal
Domain Of Occludin
Length = 140
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 64 CVEMDRLW----RSIAAKSQRDLWKRKVEQVAEEAESLKESLD---KYFLRNQRRINEAR 116
C E++ W I + QR L+KR + +E +SL+ LD K R + +++ R
Sbjct: 27 CDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYR 86
Query: 117 ERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
E +E A E + + ++ + + +S +N + L+ + ++ Y Q+
Sbjct: 87 EESEEYMAAADEYNRLKQV--KGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 139
>pdb|1WPA|A Chain A, 1.5 Angstrom Crystal Structure Of Human Occludin Fragment
413-522
Length = 114
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 69 RLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLD---KYFLRNQRRINEARERAELLGRA 125
R + I + QR L+KR + +E +SL+ LD K R + +++ RE +E A
Sbjct: 10 REYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAA 69
Query: 126 NGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
E + + ++ + + +S +N + L+ + ++ Y Q+
Sbjct: 70 ADEYNRLKQV--KGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 113
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 143 MQSVRNSSRMLQESFATGTAILAKYAEQRE-HLK-------KAQRKALDVLNTVGLSNSV 194
+ S N R L+E+ + ++ KY E+R+ HL + + ++V N L S+
Sbjct: 884 IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943
Query: 195 LRLIERRNRVDTW 207
R + RR + W
Sbjct: 944 SRYLVRRKDPELW 956
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,708,891
Number of Sequences: 62578
Number of extensions: 186411
Number of successful extensions: 701
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 41
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)