BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027099
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
Length = 225
Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/224 (70%), Positives = 194/224 (86%), Gaps = 4/224 (1%)
Query: 5 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64
VEGGG+LS++Y SAK++LL+ARDG+E+LER ESS+ DSP+L+ +VK+DI++++SLC
Sbjct: 6 VEGGGSLSDVYSSAKRILLKARDGIERLERFESSS----MDSPDLASSVKRDITEVRSLC 61
Query: 65 VEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR 124
MD LWRSI KSQRDLW+RK EQV EEAE L SL+KY RNQR++ EA+ERA+LLGR
Sbjct: 62 SNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGR 121
Query: 125 ANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDV 184
A+GE +HIL+IFDEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDV
Sbjct: 122 ASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDV 181
Query: 185 LNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
LNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 182 LNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225
>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1
Length = 219
Score = 311 bits (796), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 153/226 (67%), Positives = 185/226 (81%), Gaps = 7/226 (3%)
Query: 3 MAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQS 62
MA G LSE+Y SAK++LLRAR+G+EKLER +S D +L+ +VK+DI+++QS
Sbjct: 1 MASGTVGGLSEVYSSAKRILLRARNGIEKLERFDS-------DPTDLASSVKRDITEVQS 53
Query: 63 LCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122
LC MD LWRSI KSQRDLW+RK EQV EEAE L +SL+KY RNQR++ EA+ERA+LL
Sbjct: 54 LCSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLL 113
Query: 123 GRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKAL 182
GR +GE +HIL+IFDEEAQ M SV+NS RML++SF +G AIL+KYAEQR+ LK AQRKAL
Sbjct: 114 GRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKAL 173
Query: 183 DVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
DVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct: 174 DVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 219
>sp|O35166|GOSR2_MOUSE Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=2
SV=2
Length = 212
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 84 KRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA-NGESSHILRIFDEEAQA 142
K +V+Q+ + + L+ +L + R Q R + R+R ELL R S DE Q
Sbjct: 67 KLRVDQLKYDVQHLQTALRNFQHRRQVREQQERQRDELLSRTFTTNDSDTTIPMDESLQF 126
Query: 143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRN 202
S+ N + + G +IL QR LK Q+K LD+ N +GLSN+V+RLIE+R
Sbjct: 127 NSSLHNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRA 186
Query: 203 RVDTWIKYVGMVSTVVILYFFWRW 226
D + GM+ T +++ ++
Sbjct: 187 FQDKYFMIGGMLLTCAVMFLVVQY 210
>sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2
PE=1 SV=2
Length = 212
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRI 112
++ I QI S +E + S ++R K +V+Q+ + + L+ +L + R Q +
Sbjct: 37 IQASIDQIFS-HLERLEILSSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKE 95
Query: 113 NEARERAELLGRA-NGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQR 171
+ R+R ELL R S DE Q S++N + + G +IL QR
Sbjct: 96 QQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQR 155
Query: 172 EHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRW 226
LK Q+K LD+ N +GLSN+V+RLIE+R D + GM+ T +++ ++
Sbjct: 156 LTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMFLVVQY 210
>sp|A8XP14|GOSR2_CAEBR Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
briggsae GN=gosr-2.1 PE=3 SV=1
Length = 212
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 7/214 (3%)
Query: 15 YQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSI 74
YQS LL + + + +LE ++ D+ + ++ DIS ++ +D + S
Sbjct: 5 YQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQSIYGDISTLKDNLQALDN-YVSR 58
Query: 75 AAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILR 134
++R + +V+Q+ + + + ++ R +R A ER ELL + L
Sbjct: 59 EQPARRQAARMRVDQLRMDVQRVDMAVSAVHTRMTQRWRSASEREELLSARYRPNDTALS 118
Query: 135 IFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSV 194
I D E Q + +S L E + G+A+L Q L+ RK D+ +GLSNS
Sbjct: 119 IGDHELQLNDRLHSSHNRLDELISQGSAVLDNLKSQHFSLRGVSRKMHDIGQALGLSNST 178
Query: 195 LRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
L++I+RR R D WI +G + + +Y F+R+ R
Sbjct: 179 LQVIDRRVRED-WIFVIGCIVCCIFMYAFYRFWR 211
>sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
elegans GN=gosr-2.1 PE=3 SV=1
Length = 213
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRL 70
+ +YQS LL + + + +LE ++ D+ + + D+ ++ C +D
Sbjct: 1 MEALYQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQCIYGDVITLKENCQTLDN- 54
Query: 71 WRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESS 130
+ S ++R + +V+Q+ + + ++ R +R A ER ELL +
Sbjct: 55 YVSREPPARRQAARMRVDQLRADVHRVDMAVSAVHTRMTQRWRAATERDELLRTRYRPND 114
Query: 131 HILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGL 190
L I D E +++S L + + G+A+L Q +L+ RK ++ +GL
Sbjct: 115 TALSIGDHELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGL 174
Query: 191 SNSVLRLIERRNRVDTWIKYV-GMVSTVVILYFFWRWTR 228
SNS L++I+RR R D WI +V G + + +Y F+R+ R
Sbjct: 175 SNSTLQVIDRRVRED-WILFVIGCIVCCIFMYAFYRFWR 212
>sp|O14653|GOSR2_HUMAN Golgi SNAP receptor complex member 2 OS=Homo sapiens GN=GOSR2 PE=1
SV=2
Length = 212
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 86 KVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRA-NGESSHILRIFDEEAQAMQ 144
+V+Q+ + + L+ +L + R R + R+R ELL R S DE Q
Sbjct: 69 RVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNS 128
Query: 145 SVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRV 204
S++ + + G IL QR LK Q+K LD+ N +GLSN+V+RLIE+R
Sbjct: 129 SLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQ 188
Query: 205 DTWIKYVGMVSTVVILYFFWRW 226
D + GM+ T V+++ ++
Sbjct: 189 DKYFMIGGMLLTCVVMFLVVQY 210
>sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila
melanogaster GN=membrin PE=2 SV=1
Length = 216
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 45 DSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKY 104
+S ++ ++ I+Q + C +D L + SQR K +V+Q+ + L+ SL
Sbjct: 29 ESLDVENGIQLKITQANANCDRLDVLLYKVPP-SQRQSSKLRVDQLKYDLRHLQTSLQTA 87
Query: 105 FLRNQRRINEARERAELLGR---ANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATG 160
R QRR+ E ER +LL AN R+ D E Q + N+ R + + A+G
Sbjct: 88 RERRQRRMQEISEREQLLNHRFTANSAQPEETRLQLDYELQHHTQLGNAHRGVDDMIASG 147
Query: 161 TAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTV--- 217
+ IL QR L A ++ + +T+GLSN ++LIERR D I G+V T+
Sbjct: 148 SGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLII 207
Query: 218 -VILYFF 223
+I+YF
Sbjct: 208 ALIIYFL 214
>sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bos1 PE=3 SV=1
Length = 235
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 83 WKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQA 142
+++K Q+ E+ + LK + R I +A+ R ELLGR G + + +
Sbjct: 80 FRQKHVQLLEKFDELKAHV--------RDIAQAKNRKELLGR-RGYVNSLDSPYGNSTTD 130
Query: 143 MQSVRNSSRM-------------------LQESFATGTAILAKYAEQREHLKKAQRKALD 183
+ V S + + E G IL EQ LK + K L+
Sbjct: 131 AEIVEGPSDLSRQDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQGSVLKATKTKVLN 190
Query: 184 VLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 228
NT+G++ L LI RR++ D I Y G V+ Y +RW R
Sbjct: 191 AANTLGITRHTLSLINRRSKQDKIIFYCGAFLVFVLFYLIYRWLR 235
>sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BOS1 PE=3 SV=1
Length = 226
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 160 GTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVI 219
G A L EQ + L+ +K V T+GLS ++++E+R R D Y G+V +V
Sbjct: 158 GMAALGDLQEQSDILRSTGKKMRSVAETLGLSRETIKMVEKRARQDKRFFYGGIVFMLVC 217
Query: 220 LYFFWRW 226
Y+ +W
Sbjct: 218 FYYILKW 224
>sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BOS1 PE=3 SV=1
Length = 229
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 145 SVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRV 204
S+ ++ L G EQ E L++ Q K D L T+G+S +R IE+R +
Sbjct: 146 SLARGTQQLDHILDMGQQAFEDIVEQNETLRRLQSKFEDGLVTLGVSQGTIRTIEKRAKQ 205
Query: 205 DTWIKYVGMVSTVVILYF 222
D W+ + V T+V ++
Sbjct: 206 DKWLFWAAFVFTLVCFWY 223
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 119 AELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQ 178
A+ L + + S ++ D + +++S R + E+ G +IL QR+ L +A
Sbjct: 110 ADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAH 169
Query: 179 RKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTV----VILYFFWRWTR 228
V + VG S +L + RR + W +G + TV +I +++ TR
Sbjct: 170 ETLHGVDDNVGKSKKILTTMTRRMNRNKWT--IGAIITVLVLAIIFILYFKLTR 221
>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
Length = 1201
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 84 KRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAM 143
KR+ E+ A+EAE L++ +K Q+R+ E RER + R E + + EEA+
Sbjct: 604 KREAERKAQEAERLRKEAEK-----QKRLREERERQAEIERKQREQKELEKKRREEARQN 658
Query: 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQR 179
+ ++ +E A Y Q + +A+R
Sbjct: 659 ELREKKTKDERERKLREAAPKTDYEGQEKRDPQAKR 694
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 141 QAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER 200
Q+ +R S R++ E+ G +I+ ++QR+ L A K V + + S VL + R
Sbjct: 133 QSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSR 192
Query: 201 RNRVDTWIKYVGMVSTV--VILYFFWRWT 227
R + WI +V+ V +IL ++ +
Sbjct: 193 RMTRNKWIITSVIVALVLAIILIISYKLS 221
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 34.3 bits (77), Expect = 0.78, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 79 QRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARER 118
Q+DL K K+E VAEE ++L++ L + L + +++N A ER
Sbjct: 1611 QKDLGKIKLEGVAEETDNLQKKLTR-MLASTQKVNRATER 1649
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 120 ELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQR 179
E L R + + +L+ + +A QS+ S R+ E+ GT I+ + EQR+ L++ +
Sbjct: 120 EHLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKS 179
Query: 180 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVIL-----YFFWRW 226
+ ++ + S +LR + R+ + + V ++ + IL Y F+R
Sbjct: 180 RLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFRH 231
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 120 ELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQR 179
E + R + + +L+ D +A QS+ S R+ E+ G+ I+ + EQR+ L++ +
Sbjct: 120 EHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKS 179
Query: 180 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVIL--YFFWRWTR 228
+ ++ + S +LR + R+ + + + ++ + IL ++++ R
Sbjct: 180 RLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFLR 230
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 120 ELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQR 179
E L R + + +L+ + +A QS+ S R+ E+ G+ I+ + EQR+ L++ +
Sbjct: 120 EHLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKS 179
Query: 180 KALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVIL-----YFFWRW 226
+ ++ + S +LR + R+ + + V +V + IL Y F+R
Sbjct: 180 RLVNTNENLSKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVYYKFFRH 231
>sp|Q9PTG8|TACC3_XENLA Transforming acidic coiled-coil-containing protein 3 OS=Xenopus
laevis GN=tacc3 PE=1 SV=2
Length = 931
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 53 VKKDISQIQSLCVEMDRLWRSIAAKSQR-DLWKRKVEQVAEEAESLKESLDKYFLR---N 108
+ K + + Q + V+++ + S + +R + K +E + E+LK+ ++ Y +R
Sbjct: 794 LNKVLQEKQQVQVDLNSMETSFSELFKRLEKQKEALEGYRKNEEALKKCVEDYLVRIKKE 853
Query: 109 QRRINEARERAE-LLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESF 157
++R + AE L RAN E +H+ EA A+Q+ +M +S
Sbjct: 854 EQRYQALKAHAEEKLNRANEEIAHVRSKAKSEATALQATLRKEQMKIQSL 903
>sp|P80269|NDUS8_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
mitochondrial OS=Solanum tuberosum PE=1 SV=2
Length = 229
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 50 SFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQ 109
SF+ KD + + L E+ + W S+ +S L+ + E L +L KYF +
Sbjct: 46 SFSTDKDDEEREQLAKELSKDWNSVFERSINTLF------LTEMVRGLMLTL-KYFFEKK 98
Query: 110 RRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAE 169
IN E+ L R GE H LR + A R + L E+ AI + E
Sbjct: 99 VTINYPFEKGPLSPRFRGE--HALRRY-----ATGEERCIACKLCEAICPAQAITIEAEE 151
Query: 170 QREHLKKAQRKALDVLNTV 188
+ + ++ R +D+ +
Sbjct: 152 REDGSRRTTRYDIDMTKCI 170
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 21 LLLRARDGVEKLER-LESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQ 79
LL RAR ++K++ LE + ++S Q++ ++++L + A+SQ
Sbjct: 2504 LLQRARQSLQKVQDDLEPRLNASAGKVQKISAVNNATEHQLK----DINKLIDQLPAESQ 2559
Query: 80 RDLWKRKVEQVAEEAESLK---ESLDKYFLRNQRRINEARERAELLGRANGESSHILRIF 136
RD+WK ++ E LK E L+ ++ + + +A L N + S +
Sbjct: 2560 RDMWKNSNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQL 2619
Query: 137 DEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTV 188
D+ ++ + + ++E + + ++ E+LK A + N++
Sbjct: 2620 DDVEGSVSKLNELAEDIEEQQHRVGSQSRQLGQEIENLKAQVEAARQLANSI 2671
>sp|P45927|YQBK_BACSU Uncharacterized protein YqbK OS=Bacillus subtilis (strain 168)
GN=yqbK PE=4 SV=3
Length = 466
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 YQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWR 72
Y+ A +L R D E +ERL + YDS + S +V+KDI+ + SL E +++++
Sbjct: 308 YEGAVDVLNRI-DNDEIVERLSNGEFLFTYDSRDKSVSVEKDINSLTSLTAEKNKMFQ 364
>sp|Q9Z2Z3|PEX14_CRILO Peroxisomal membrane protein PEX14 OS=Cricetulus longicaudatus
GN=PEX14 PE=2 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 20 KLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQ 79
L+L R+ ++LER+ SS S ELS +V + ++Q+Q+ + L R
Sbjct: 133 PLILGGREDRKQLERMASSLS-------ELSGSVAQTVTQVQTTLASVQELLRQ------ 179
Query: 80 RDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINE 114
++KV+++A E + K + ++ + INE
Sbjct: 180 ---QQQKVQELAHELAAAKATTSTNWILESQNINE 211
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRI 112
V+K + + + L +MD R I +S R ++ ++ +E L+ + RI
Sbjct: 41 VEKQLEEARELLEQMDLEVREIPPQS-RGMYSNRMRSYKQEMGKLETDFKRS------RI 93
Query: 113 NEARE-RAELLGRA-NGESSHILRIFDEEAQAMQS---VRNSSRMLQ-------ESFATG 160
+ E R ELLG A N + ++++ +E A + + + SSR L+ E+ G
Sbjct: 94 AYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIG 153
Query: 161 TAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERR---NRVDTWIKYVGMVSTV 217
+L + RE +++A+ + + +G S+ +L + RR NR+ + +G++ +
Sbjct: 154 QEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRI--LLVILGIIVVI 211
Query: 218 VIL---YFFWR 225
IL FF R
Sbjct: 212 TILTAITFFVR 222
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERR 201
A QS+ S R+ E+ G+ I+ + EQR+ L++ + + ++ + S +LR + R+
Sbjct: 142 ATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRK 201
>sp|Q9FX83|NDS8B_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B,
mitochondrial OS=Arabidopsis thaliana GN=At1g16700 PE=1
SV=1
Length = 222
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 43 GYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLD 102
G S +S+ KD + + L E+ + W ++ +S L+ + E L +L
Sbjct: 32 GLQSRAISYGSNKDDEEAEQLAKEISKDWSTVFERSMNTLF------LTEMVRGLSLTL- 84
Query: 103 KYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTA 162
KYF + IN E+ L R GE H LR + + + + L E+ A
Sbjct: 85 KYFFDPKVTINYPFEKGPLSPRFRGE--HALRRYPTGEERCIACK-----LCEAVCPAQA 137
Query: 163 ILAKYAEQREHLKKAQRKALDVLNTV 188
I + E+ + ++ R +D+ +
Sbjct: 138 ITIEAEEREDGSRRTTRYDIDMTKCI 163
>sp|A8EU50|SYE2_ARCB4 Glutamate--tRNA ligase 2 OS=Arcobacter butzleri (strain RM4018)
GN=gltX2 PE=3 SV=1
Length = 433
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 86 KVEQVAEEAESLKESLDKYFLRNQRRINEARER--AELLGRANGESSHILRIFDEEAQAM 143
K+E +++ S K +DK N++ I + +++LG A+G+ + ++F EEA +
Sbjct: 285 KIENISKS--SAKFDIDKLRFINRKHIENLDDMRLSKILGFADGDIGKLGKLFLEEASTI 342
Query: 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR 196
+ ++ ++ FAT T L + + + +K+ +KA N L N ++
Sbjct: 343 KEIKEK---IEPIFATKTT-LEGFENEFKSIKECLQKATYFDNYEDLKNYIVN 391
>sp|A4UGR9|XIRP2_HUMAN Xin actin-binding repeat-containing protein 2 OS=Homo sapiens
GN=XIRP2 PE=1 SV=2
Length = 3374
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 46 SPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLD--- 102
SP V KD+ Q E++RL++ I + +++L K + +V+E S S
Sbjct: 302 SPPRRLPVPKDVYSKQRNLYELNRLYKHIHPELRKNLEKDYISEVSEIVSSQMNSGSSVS 361
Query: 103 ------KYFLRN-----QRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSS 150
+Y N Q+ +N RE E GE I IF E Q + S+ N S
Sbjct: 362 ADVQQARYVFENTNDSSQKDLNSEREYLEWDEILKGEVQSIRWIF--ENQPLDSINNGS 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,747,630
Number of Sequences: 539616
Number of extensions: 2541360
Number of successful extensions: 12617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 12399
Number of HSP's gapped (non-prelim): 472
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)