Query 027099
Match_columns 228
No_of_seqs 138 out of 598
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.4 3.9E-13 1.3E-17 98.6 8.3 94 3-102 5-102 (102)
2 2nps_C Vesicle transport throu 99.4 7.9E-13 2.7E-17 92.9 9.2 70 137-206 12-81 (81)
3 1vcs_A Vesicle transport throu 99.4 1.7E-12 5.9E-17 95.2 9.7 91 9-106 5-95 (102)
4 3onj_A T-snare VTI1; helix, HA 99.4 7.5E-12 2.6E-16 91.0 11.1 87 11-104 3-92 (97)
5 1gl2_C VTI1B, vesicle transpor 99.2 5.4E-11 1.8E-15 80.1 7.4 59 142-200 7-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 98.7 1.4E-07 4.7E-12 65.7 8.9 58 142-199 21-78 (79)
7 1nhl_A Synaptosomal-associated 98.4 9.3E-07 3.2E-11 57.0 6.1 52 147-198 3-54 (54)
8 3b5n_C Protein transport prote 97.3 0.0018 6E-08 43.6 8.2 57 144-200 12-68 (70)
9 1l4a_C S-SNAP25 fusion protein 97.0 0.001 3.6E-08 46.3 5.3 57 143-199 26-82 (83)
10 3hd7_A Vesicle-associated memb 96.8 0.033 1.1E-06 39.2 11.5 28 156-184 28-55 (91)
11 3hd7_B Syntaxin-1A; membrane p 96.7 0.069 2.4E-06 38.8 13.1 80 144-223 21-103 (109)
12 2kog_A Vesicle-associated memb 89.8 0.048 1.6E-06 40.4 -0.6 32 144-175 33-64 (119)
13 2ks1_B Epidermal growth factor 85.7 0.55 1.9E-05 28.3 2.5 19 210-228 18-36 (44)
14 4dnd_A Syntaxin-10, SYN10; str 85.3 9.5 0.00033 28.3 11.7 71 3-73 21-92 (130)
15 2l2t_A Receptor tyrosine-prote 85.2 0.61 2.1E-05 28.1 2.5 17 211-227 18-34 (44)
16 2k1k_A Ephrin type-A receptor 83.5 1.3 4.6E-05 25.7 3.4 21 208-228 16-36 (38)
17 1t3j_A Mitofusin 1; coiled coi 82.0 7.6 0.00026 27.3 7.5 46 50-101 49-94 (96)
18 4ev6_A Magnesium transport pro 80.6 26 0.00087 29.8 18.0 44 56-103 172-215 (339)
19 1gl2_D Syntaxin 8, vesicle tra 80.1 8.1 0.00028 24.7 6.8 55 144-198 9-63 (65)
20 1q90_R Cytochrome B6-F complex 79.9 3.2 0.00011 25.5 4.4 30 198-227 9-38 (49)
21 1fio_A SSO1 protein; four heli 79.1 20 0.00069 27.7 11.0 101 5-106 1-105 (196)
22 1n7s_D SNAP-25A; neuronal snar 76.0 13 0.00044 23.8 7.4 54 144-197 10-63 (66)
23 1sfc_D Protein (SNAP-25B), pro 74.2 12 0.00041 25.5 6.7 56 144-199 29-84 (87)
24 2nps_D Syntaxin-6; vesicle fus 74.0 17 0.00059 24.4 8.1 59 144-202 19-77 (82)
25 3hd7_A Vesicle-associated memb 73.3 20 0.00067 24.7 9.9 83 144-226 5-89 (91)
26 3b5n_D Protein transport prote 72.4 16 0.00056 23.4 6.6 54 144-197 10-63 (64)
27 2l34_A TYRO protein tyrosine k 72.3 4.7 0.00016 22.6 3.3 20 208-227 12-31 (33)
28 2iub_A CORA, divalent cation t 70.6 50 0.0017 28.2 19.5 47 53-103 193-239 (363)
29 2v71_A Nuclear distribution pr 67.8 43 0.0015 26.4 19.7 152 11-186 15-171 (189)
30 1afo_A Glycophorin A; integral 66.4 5.6 0.00019 23.1 2.8 20 207-226 14-33 (40)
31 1l4a_D S-SNAP25 fusion protein 66.1 15 0.00052 25.1 5.7 55 144-198 30-84 (87)
32 3arc_L Photosystem II reaction 63.4 9 0.00031 21.7 3.2 21 207-227 16-36 (37)
33 4i0x_B ESAT-6-like protein MAB 63.2 34 0.0012 23.6 10.3 57 48-104 25-86 (103)
34 2knc_B Integrin beta-3; transm 61.6 6.7 0.00023 26.5 3.1 14 213-226 21-34 (79)
35 3ghg_A Fibrinogen alpha chain; 57.0 73 0.0025 29.1 9.8 33 144-176 117-149 (562)
36 2k9j_B Integrin beta-3; transm 55.6 12 0.0004 22.2 3.1 11 216-226 23-33 (43)
37 1dn1_B Syntaxin 1A, syntaxin b 55.4 85 0.0029 25.7 18.6 64 144-207 200-266 (267)
38 2dnx_A Syntaxin-12; snare, HAB 53.6 62 0.0021 23.6 15.5 110 7-122 8-123 (130)
39 3s8f_C Cytochrome C oxidase po 51.7 22 0.00074 20.0 3.5 22 205-226 7-28 (34)
40 2klu_A T-cell surface glycopro 49.0 17 0.00059 23.7 3.2 18 208-225 12-29 (70)
41 2kog_A Vesicle-associated memb 47.7 21 0.00071 26.0 4.0 16 86-101 34-49 (119)
42 3ol1_A Vimentin; structural ge 47.5 75 0.0026 22.8 9.5 27 3-32 6-32 (119)
43 1jdm_A Sarcolipin; helix, memb 46.7 12 0.0004 20.2 1.8 20 205-224 7-26 (31)
44 3tnu_B Keratin, type II cytosk 45.2 85 0.0029 22.7 11.3 18 87-104 77-94 (129)
45 2l8s_A Integrin alpha-1; trans 44.9 21 0.00072 22.3 3.1 15 212-226 19-33 (54)
46 2knc_A Integrin alpha-IIB; tra 44.7 21 0.00072 22.2 3.1 14 212-225 22-35 (54)
47 2c5k_T Syntaxin TLG1, T-snare 44.1 70 0.0024 22.1 6.2 51 48-101 36-91 (95)
48 2lon_A HIG1 domain family memb 49.8 4.9 0.00017 28.5 0.0 35 193-227 16-50 (99)
49 2v4h_A NF-kappa-B essential mo 43.3 88 0.003 22.3 10.3 54 50-103 26-80 (110)
50 3tnu_A Keratin, type I cytoske 43.1 93 0.0032 22.6 11.0 16 88-103 80-95 (131)
51 3nmd_A CGMP dependent protein 42.1 72 0.0025 21.0 5.8 19 86-104 48-66 (72)
52 3etw_A Adhesin A; antiparallel 42.0 97 0.0033 22.5 11.0 41 78-123 68-108 (119)
53 2p32_A Heat shock 70 kDa prote 41.5 91 0.0031 22.0 9.7 53 3-64 8-62 (120)
54 2ifo_A Inovirus; helical virus 41.0 24 0.00083 21.2 2.8 21 208-228 23-43 (46)
55 2rpa_A Katanin P60 ATPase-cont 40.5 80 0.0027 21.1 6.9 44 54-97 29-72 (78)
56 2c5k_T Syntaxin TLG1, T-snare 39.1 93 0.0032 21.4 9.2 52 47-103 9-61 (95)
57 2lf0_A Uncharacterized protein 38.8 34 0.0012 24.8 3.8 47 59-106 11-57 (123)
58 1fjk_A Cardiac phospholamban; 38.7 40 0.0014 20.1 3.5 24 200-224 25-48 (52)
59 3arc_I Photosystem II reaction 37.7 32 0.0011 19.7 2.8 16 205-220 4-19 (38)
60 2xhe_B Syntaxin1; exocytosis, 37.7 1.7E+02 0.0057 23.9 11.9 96 10-105 45-158 (279)
61 3i00_A HIP-I, huntingtin-inter 37.3 1.2E+02 0.004 22.0 8.9 54 45-103 12-65 (120)
62 2lom_A HIG1 domain family memb 43.2 7.2 0.00025 27.3 0.0 35 193-227 15-49 (93)
63 2k1a_A Integrin alpha-IIB; sin 36.8 33 0.0011 20.2 2.9 14 212-225 20-33 (42)
64 2dnx_A Syntaxin-12; snare, HAB 36.0 1.2E+02 0.0042 21.9 8.3 59 44-102 10-68 (130)
65 1ydi_B Alpha-actinin 4; cell a 36.0 43 0.0015 17.5 3.0 20 10-29 2-21 (26)
66 3arc_X Photosystem II PSBX pro 35.8 37 0.0013 19.6 2.9 11 208-218 13-23 (39)
67 2voy_D Sarcoplasmic/endoplasmi 35.7 30 0.001 18.1 2.4 19 207-225 6-24 (26)
68 1b9u_A Protein (ATP synthase); 33.6 46 0.0016 18.1 3.1 15 212-226 10-24 (34)
69 2w6b_A RHO guanine nucleotide 33.5 87 0.003 19.4 5.3 19 87-105 12-30 (56)
70 1m56_D Cytochrome C oxidase; m 33.4 46 0.0016 20.4 3.3 18 207-224 31-48 (51)
71 1qle_D Cytochrome AA3, ccytoch 32.6 43 0.0015 19.7 3.0 17 207-223 23-39 (43)
72 4dnd_A Syntaxin-10, SYN10; str 32.4 1.5E+02 0.005 21.7 7.4 57 47-103 30-92 (130)
73 2y69_J Cytochrome C oxidase po 31.9 52 0.0018 22.2 3.6 26 201-226 45-70 (80)
74 3zbh_A ESXA; unknown function, 31.2 1.1E+02 0.0039 20.0 9.7 57 48-104 23-82 (99)
75 1v54_J Cytochrome C oxidase po 30.6 61 0.0021 20.4 3.6 25 202-226 25-49 (59)
76 3bz1_X Photosystem II PSBX pro 30.5 48 0.0016 20.2 2.9 12 208-219 23-34 (50)
77 4a5x_A MITD1, MIT domain-conta 30.3 1.2E+02 0.0043 20.2 7.6 50 54-103 33-82 (86)
78 1deq_A Fibrinogen (alpha chain 30.2 2.8E+02 0.0094 24.2 14.2 90 82-181 64-157 (390)
79 4aj5_A SKA1, spindle and kinet 29.4 1.4E+02 0.0047 20.5 7.8 59 9-73 4-62 (91)
80 4h63_H Mediator of RNA polymer 29.4 2E+02 0.0067 22.7 7.3 53 10-67 12-64 (200)
81 3h6p_C ESAT-6-like protein ESX 29.3 41 0.0014 22.6 2.9 58 46-103 18-78 (96)
82 3fav_A ESAT-6-like protein ESX 29.0 1.3E+02 0.0045 20.1 9.0 58 47-104 13-80 (101)
83 2lk9_A Bone marrow stromal ant 28.9 59 0.002 18.1 2.9 14 206-219 4-17 (35)
84 4emc_A Monopolin complex subun 28.2 2.2E+02 0.0074 22.3 7.6 51 52-104 10-60 (190)
85 2v4h_A NF-kappa-B essential mo 28.1 1.6E+02 0.0056 20.9 9.2 25 78-102 83-107 (110)
86 3a7p_A Autophagy protein 16; c 28.0 1.9E+02 0.0067 21.8 9.4 87 9-105 24-116 (152)
87 2v66_B Nuclear distribution pr 27.6 1.7E+02 0.0057 20.9 14.0 57 12-75 6-62 (111)
88 3tul_A Cell invasion protein S 27.5 2E+02 0.0067 21.6 12.9 68 55-122 76-144 (158)
89 2lx0_A Membrane fusion protein 27.5 75 0.0026 16.8 3.4 16 210-225 9-24 (32)
90 3gwk_C SAG1039, putative uncha 27.1 1.4E+02 0.0047 19.7 10.0 58 48-105 22-82 (98)
91 1wfd_A Hypothetical protein 15 26.7 1.5E+02 0.0052 20.0 7.6 51 53-103 31-81 (93)
92 1ez3_A Syntaxin-1A; three heli 26.6 1.7E+02 0.0057 20.5 7.1 52 50-101 14-66 (127)
93 1hs7_A Syntaxin VAM3; UP-and-D 26.4 1.6E+02 0.0056 20.4 6.4 79 15-104 5-83 (97)
94 3fav_B ESAT-6, 6 kDa early sec 26.0 1.4E+02 0.0049 19.5 9.5 57 48-104 12-78 (94)
95 4b6x_A AVRRPS4, avirulence pro 24.8 1.6E+02 0.0055 19.7 8.5 58 46-104 24-81 (90)
96 4gwp_C Mediator of RNA polymer 24.3 2.9E+02 0.0098 24.2 7.8 55 7-67 29-83 (407)
97 2v6x_A Vacuolar protein sortin 24.3 1.6E+02 0.0053 19.4 7.8 48 56-103 32-79 (85)
98 3nmd_A CGMP dependent protein 23.9 1.6E+02 0.0054 19.3 6.7 14 51-64 43-56 (72)
99 2l6w_A Beta-type platelet-deri 29.4 17 0.00057 21.1 0.0 10 217-226 23-32 (39)
100 3qc1_A Immunoglobulin-binding 23.2 1.7E+02 0.0057 23.8 6.0 52 9-72 31-85 (243)
101 3ci9_A Heat shock factor-bindi 23.0 1.3E+02 0.0045 18.1 4.1 22 11-32 4-25 (48)
102 2nps_B Syntaxin 13, vesicle-as 23.0 1.5E+02 0.0052 18.8 9.1 59 44-104 2-60 (71)
103 2eqb_B RAB guanine nucleotide 22.1 2E+02 0.007 19.9 9.5 21 9-29 5-25 (97)
104 3cvf_A Homer-3, homer protein 21.8 1.8E+02 0.0063 19.3 6.9 8 56-63 60-67 (79)
105 3v47_C Flagellin; innate immun 21.8 3E+02 0.01 24.3 7.7 49 47-95 31-83 (425)
106 3swy_A Cyclic nucleotide-gated 21.6 1.4E+02 0.0047 17.8 5.8 15 53-67 3-17 (46)
107 3swf_A CGMP-gated cation chann 21.4 1.8E+02 0.0063 19.1 7.0 16 53-68 5-20 (74)
108 2l35_A DAP12-NKG2C_TM; immunor 21.3 97 0.0033 19.8 3.2 18 209-226 13-30 (63)
109 2w2u_A Hypothetical P60 katani 21.2 1.9E+02 0.0064 19.2 6.7 46 54-99 36-81 (83)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.43 E-value=3.9e-13 Score=98.63 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=76.3
Q ss_pred ccccCCCCHHHHHHHHH----HHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 027099 3 MAVEGGGTLSEIYQSAK----KLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKS 78 (228)
Q Consensus 3 ~~~~~~~~~~~L~~~a~----~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s 78 (228)
.||-.+.+|.+||..|. .+..+|+.+++++.... ++++++..+++|+..|+++.++|++|+.++++.|+ +
T Consensus 5 ~~~~~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~-----~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~-s 78 (102)
T 2qyw_A 5 IHMAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTA-----GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPL-T 78 (102)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-H
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-H
Confidence 46666777778887665 56666777777664331 23478999999999999999999999999999987 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 79 QRDLWKRKVEQVAEEAESLKESLD 102 (228)
Q Consensus 79 ~r~~~~~rv~~~r~el~~l~~~~~ 102 (228)
.|..++.||+.||.+|+.++++|+
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999873
No 2
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.42 E-value=7.9e-13 Score=92.93 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhhh
Q 027099 137 DEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDT 206 (228)
Q Consensus 137 d~~~~~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~dk 206 (228)
+...+..++|.+|.+.+.||+++|.+|+++|..||++|.+++++++++++.++.|.++|+.|.||..+||
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 4444566999999999999999999999999999999999999999999999999999999999999886
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.39 E-value=1.7e-12 Score=95.20 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 027099 9 GTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVE 88 (228)
Q Consensus 9 ~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~ 88 (228)
.-|+..-.++..+..+|..+++++.... |++++..+.+|+..|+++.++|++|+.+++++|+ +.|..++.||+
T Consensus 5 elFe~YE~df~~l~~~i~~kl~~i~~~~------geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~-~~R~~~~~klr 77 (102)
T 1vcs_A 5 SSGEGYEQDFAVLTAEITSKIARVPRLP------PDEKKQMVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNRMR 77 (102)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHGGGSC------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HhHHHHHHHHH
Confidence 4466667788999999999999986542 3488999999999999999999999999999987 88999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027099 89 QVAEEAESLKESLDKYFL 106 (228)
Q Consensus 89 ~~r~el~~l~~~~~~~~~ 106 (228)
.|+.+|..++++|+++..
T Consensus 78 ~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 78 SYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988643
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.36 E-value=7.5e-12 Score=90.96 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhhHHHHHHHHH
Q 027099 11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSI--AAKSQRDLWKRKVE 88 (228)
Q Consensus 11 ~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~--~~~s~r~~~~~rv~ 88 (228)
|+..-.++..+..+|..++++++...+ ++++..+.+|+..++++.++|++|+.+++++ |+ +.|..++.||+
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~g------e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~-~~R~~~~~klr 75 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPL------SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDA-SERATYKAKLR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence 455667788899999999998875433 3789999999999999999999999999999 87 88999999999
Q ss_pred HHHHHHHH-HHHHHHHH
Q 027099 89 QVAEEAES-LKESLDKY 104 (228)
Q Consensus 89 ~~r~el~~-l~~~~~~~ 104 (228)
.|+.+|.. ++++|+++
T Consensus 76 ~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 76 EWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999 99999886
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.19 E-value=5.4e-11 Score=80.07 Aligned_cols=59 Identities=29% Similarity=0.477 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH
Q 027099 142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER 200 (228)
Q Consensus 142 ~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r 200 (228)
..++|.+|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..++.|.++|+.|.|
T Consensus 7 t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 7 ATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 45899999999999999999999999999999999999999999999999999999875
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.66 E-value=1.4e-07 Score=65.68 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099 142 AMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE 199 (228)
Q Consensus 142 ~~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~ 199 (228)
..+++.++.+++.++++.|.+|+.+|..||++|.++++.|.++++.+..|.++|+.|+
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 4589999999999999999999999999999999999999999999999999999986
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.36 E-value=9.3e-07 Score=56.96 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHH
Q 027099 147 RNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI 198 (228)
Q Consensus 147 ~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I 198 (228)
.++-+.+.++++.|..|+.+|..||++|.++++.|.++++.+..|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 4678899999999999999999999999999999999999999999998753
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.27 E-value=0.0018 Score=43.65 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIER 200 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~r 200 (228)
++-.++-+++.+..+.|.+++..|..|++.|.++.+.|-+++..+..+.+-++.+..
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777788899999999999999999999999999999999999999998888763
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.03 E-value=0.001 Score=46.27 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099 143 MQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE 199 (228)
Q Consensus 143 ~~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~ 199 (228)
.++-.++-+++.+..+.|..++..|..|++.|.++.+.|-++.+.+..+.+.|+.|+
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367778888889999999999999999999999999999999999999888776554
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.77 E-value=0.033 Score=39.24 Aligned_cols=28 Identities=7% Similarity=0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099 156 SFATGTAILAKYAEQREHLKKAQRKALDV 184 (228)
Q Consensus 156 ~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~ 184 (228)
.++.| +-|++|.+..+.|......+...
T Consensus 28 vL~Rg-ekL~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 28 VLERD-QKLSELDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 44445 44666666666666655555443
No 11
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.68 E-value=0.069 Score=38.83 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHH---HHHHhhhhhhHHHHHHHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR---LIERRNRVDTWIKYVGMVSTVVIL 220 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~---~I~rR~~~dk~I~~~~i~~~~~~i 220 (228)
+.+.+-.+.+.+..++-...-.-..+|.+.+.++..-+.++...+..++.=|. ++.++.++-+|+++++++++++++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~ 100 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIII 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHH
Confidence 55666666666777776677777789999999999999999999999998774 455556666666655444444444
Q ss_pred HHH
Q 027099 221 YFF 223 (228)
Q Consensus 221 ~~i 223 (228)
.++
T Consensus 101 ~~~ 103 (109)
T 3hd7_B 101 AST 103 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=89.77 E-value=0.048 Score=40.39 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLK 175 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~ 175 (228)
+.|......++|+..+-...++.+-+..+.|.
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd 64 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLS 64 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 55666666666666666665555555544443
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.74 E-value=0.55 Score=28.34 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 027099 210 YVGMVSTVVILYFFWRWTR 228 (228)
Q Consensus 210 ~~~i~~~~~~i~~i~~~~~ 228 (228)
+||+++++++++.+++|+|
T Consensus 18 VgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555553
No 14
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=85.27 E-value=9.5 Score=28.25 Aligned_cols=71 Identities=8% Similarity=0.031 Sum_probs=41.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099 3 MAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTST-GGYDSPELSFAVKKDISQIQSLCVEMDRLWRS 73 (228)
Q Consensus 3 ~~~~~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~-~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~ 73 (228)
|.|+...-|-.....+.....-++..+.+.......+++ +.++...+-++++..|..++.-+++|+.-+.-
T Consensus 21 ~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 21 QSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666667777777777777776544322111 12345566788888888888888888877764
No 15
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.23 E-value=0.61 Score=28.15 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027099 211 VGMVSTVVILYFFWRWT 227 (228)
Q Consensus 211 ~~i~~~~~~i~~i~~~~ 227 (228)
||+++++++++.+++|+
T Consensus 18 gGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 18 GGLFILVIVGLTFAVYV 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555554
No 16
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.46 E-value=1.3 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027099 208 IKYVGMVSTVVILYFFWRWTR 228 (228)
Q Consensus 208 I~~~~i~~~~~~i~~i~~~~~ 228 (228)
|++|.++...++..++|+|||
T Consensus 16 iVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHee
Confidence 444555444555555555554
No 17
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=82.04 E-value=7.6 Score=27.30 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027099 50 SFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESL 101 (228)
Q Consensus 50 ~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~ 101 (228)
..+++..|.++..-|+.||...+. -..++.|..-+..+|..+..+|
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~------aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNN------SKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433332 1234445555666666665554
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=80.64 E-value=26 Score=29.80 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 56 DISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 56 ~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
-++++.+-+++++..+...+. .....++-.+|.++-.+++.+.-
T Consensus 172 ~l~~l~~~i~~lE~~l~~~~~----~~~l~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 172 ILMNLEDELEELEDKLLAGYD----REVMEKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHHHHHHHHHHHHTSTTCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444443332222 23445666777777766666643
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.05 E-value=8.1 Score=24.72 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI 198 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I 198 (228)
+.|..-+..+...-.+|..|=+++..|...|......+-.+...+...++=+.++
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777778888999999999999999999999998888887766555443
No 20
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=79.93 E-value=3.2 Score=25.50 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 027099 198 IERRNRVDTWIKYVGMVSTVVILYFFWRWT 227 (228)
Q Consensus 198 I~rR~~~dk~I~~~~i~~~~~~i~~i~~~~ 227 (228)
|+||..-+++++..+.++...+++=+++||
T Consensus 9 m~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 9 MNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 899999999888555544454555555554
No 21
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=79.12 E-value=20 Score=27.71 Aligned_cols=101 Identities=8% Similarity=0.018 Sum_probs=53.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcC-CCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhH
Q 027099 5 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESS-TSTGGY-DSPELSFAVKKDISQIQSLCVEMDRLWRSIAA--KSQR 80 (228)
Q Consensus 5 ~~~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~-~~~~~~-~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~--~s~r 80 (228)
|.+++.|-+...........|...+..|.+.... ..++.. +.+.+..+++....+...+.......+..+.. +..|
T Consensus 1 ~~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r 80 (196)
T 1fio_A 1 MHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDT 80 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4567788888888888889999998888876422 111100 11234444444444444444444433333211 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 81 DLWKRKVEQVAEEAESLKESLDKYFL 106 (228)
Q Consensus 81 ~~~~~rv~~~r~el~~l~~~~~~~~~ 106 (228)
..+.-+..+..++..+-.+|+.+..
T Consensus 81 -~~k~~~~~L~~~f~~~~~~fq~~Q~ 105 (196)
T 1fio_A 81 -NKQAQAENSRQRFLKLIQDYRIVDS 105 (196)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344566666666666666544
No 22
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=75.96 E-value=13 Score=23.81 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRL 197 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~ 197 (228)
+.|..-+..+...-.+|..+=..|..|...|.....++-.+...+...++=+.+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456667777777888899999999999999999999999999888877665544
No 23
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=74.23 E-value=12 Score=25.52 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIE 199 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~ 199 (228)
+.|..-+..+...-.+|..+=..|..|...|.....++-.+...|...++=+.++.
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888899999999999999999999999999999988877666553
No 24
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=74.02 E-value=17 Score=24.37 Aligned_cols=59 Identities=10% Similarity=-0.019 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhh
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRN 202 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~ 202 (228)
+.|..-+..+...-.+|..|=++|..|...|......+-.+.+.+...++=+.++.++.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666677777888889999999999999999999999999999988888887777654
No 25
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=73.25 E-value=20 Score=24.68 Aligned_cols=83 Identities=8% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVD--TWIKYVGMVSTVVILY 221 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I~rR~~~d--k~I~~~~i~~~~~~i~ 221 (228)
+.|......++|+-.+=...++.+-+..+.|..-.+|-.+..+.-..=.+.-+++.|++.=. |+.++.|+++++++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888777766655544333233333344433222 3333334444344444
Q ss_pred HHHHH
Q 027099 222 FFWRW 226 (228)
Q Consensus 222 ~i~~~ 226 (228)
++++|
T Consensus 85 i~~~~ 89 (91)
T 3hd7_A 85 IIVYF 89 (91)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 44433
No 26
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=72.45 E-value=16 Score=23.44 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRL 197 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~ 197 (228)
+-|..-+..+...-.+|.++=..+-.|.+.|.++..+.-.++..+...+.=|.+
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556777777788888899999999999999999999999999888776655443
No 27
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=72.29 E-value=4.7 Score=22.59 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027099 208 IKYVGMVSTVVILYFFWRWT 227 (228)
Q Consensus 208 I~~~~i~~~~~~i~~i~~~~ 227 (228)
|+++-++.++++..++|||-
T Consensus 12 IVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred EeHHHHHHHHHHHHHHhhee
Confidence 44455666666666666553
No 28
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=70.61 E-value=50 Score=28.25 Aligned_cols=47 Identities=6% Similarity=-0.043 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 53 i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
.-..++.+.+-+++++..+...|. .....++-.++.++-.+++.+.-
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~~~----~~~l~~l~~lrr~l~~lrr~l~p 239 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLERPE----KETVQRTHQLKRNLVELRKTIWP 239 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555556655544332 23345677777777777776654
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.84 E-value=43 Score=26.38 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 027099 11 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQV 90 (228)
Q Consensus 11 ~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~ 90 (228)
|-.++.++..-..+++.-|.-+.. ..+.++.+++..|..+..-+.++...+.... .....|+.|+.+.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqe----------sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~--~E~e~~k~K~~~~ 82 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQE----------GSRELEAELEAQLVQAEQRNRDLQADNQRLK--YEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 556666677777777777766642 3578999999999999988888876665542 2455677777777
Q ss_pred HHH----HHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCCCCChhhhchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 91 AEE----AESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEE-AQAMQSVRNSSRMLQESFATGTAILA 165 (228)
Q Consensus 91 r~e----l~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~~~~~~~~~~~d~~-~~~~~~L~~s~~~lde~~~~g~~~l~ 165 (228)
..+ ...+++++..+... +..|-.... +-....+.+.+. +....+|..-...++..++..+=.=.
T Consensus 83 ~~e~~~~~~~Lq~el~~l~~~----------~~~l~~~ir-eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~ 151 (189)
T 2v71_A 83 YAQSYKQVSVLEDDLSQTRAI----------KEQLHKYVR-ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLES 151 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 666 55555555443221 111100000 000000112221 22346667777777777777665555
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 027099 166 KYAEQREHLKKAQRKALDVLN 186 (228)
Q Consensus 166 ~L~~Qr~~L~~~~~kl~~~~~ 186 (228)
+|.. ++.|.-...||.|-..
T Consensus 152 El~E-Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 152 ELDE-KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHH-HHHHHCCC--------
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 6654 6666555555554433
No 30
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=66.41 E-value=5.6 Score=23.10 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027099 207 WIKYVGMVSTVVILYFFWRW 226 (228)
Q Consensus 207 ~I~~~~i~~~~~~i~~i~~~ 226 (228)
.|+++.|+..+..++++.|-
T Consensus 14 lII~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666655555555554
No 31
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=66.14 E-value=15 Score=25.08 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLI 198 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~~I 198 (228)
+-|..-+..+...-.+|..+=..|..|...|..+..++-.++..+...++=+.++
T Consensus 30 ~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 30 NNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888899999999999999999999999999999998887766554
No 32
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=63.44 E-value=9 Score=21.72 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027099 207 WIKYVGMVSTVVILYFFWRWT 227 (228)
Q Consensus 207 ~I~~~~i~~~~~~i~~i~~~~ 227 (228)
-+.||.+.++++.+.+--|||
T Consensus 16 SLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcc
Confidence 356777777788888888877
No 33
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=63.24 E-value=34 Score=23.56 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhch---hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 48 ELSFAVKKDISQIQSLCVEMDRL--WRSIAA---KSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 48 ~l~~~i~~~l~~l~~~i~~m~~~--~~~~~~---~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
.....|+..|+++...++.|... +..... ......|...++++..-|..+...++..
T Consensus 25 ~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 25 GFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888777 665322 1234567777777777777777776654
No 34
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.61 E-value=6.7 Score=26.49 Aligned_cols=14 Identities=7% Similarity=0.413 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 027099 213 MVSTVVILYFFWRW 226 (228)
Q Consensus 213 i~~~~~~i~~i~~~ 226 (228)
++++.++++++|++
T Consensus 21 illiGllllliwk~ 34 (79)
T 2knc_B 21 ILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444555554
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.03 E-value=73 Score=29.09 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKK 176 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~ 176 (228)
.++......++..+.+=...-..|.+|+..|++
T Consensus 117 RrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 117 SRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666677777778777766
No 36
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=55.59 E-value=12 Score=22.19 Aligned_cols=11 Identities=9% Similarity=0.459 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 027099 216 TVVILYFFWRW 226 (228)
Q Consensus 216 ~~~~i~~i~~~ 226 (228)
.-++++++|++
T Consensus 23 iGl~lLliwk~ 33 (43)
T 2k9j_B 23 IGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444455555
No 37
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=55.40 E-value=85 Score=25.70 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcchHHHHH---HHHHhhhhhhH
Q 027099 144 QSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLR---LIERRNRVDTW 207 (228)
Q Consensus 144 ~~L~~s~~~lde~~~~g~~~l~~L~~Qr~~L~~~~~kl~~~~~~lg~s~~ll~---~I~rR~~~dk~ 207 (228)
.-+....+.+.++.++=...-.-...|.+.|.++-.-+..+...+..+..=|. .+.++.+.-||
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33444445555555444444445568999999999999999999998887775 34444444343
No 38
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.61 E-value=62 Score=23.55 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch------hhhH
Q 027099 7 GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAA------KSQR 80 (228)
Q Consensus 7 ~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~------~s~r 80 (228)
.++.|.+|....-..++.|...+..|.++.....++ .+.+.+-..|........+++......+..+.. +...
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~-kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~ 86 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK-QDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQ 86 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 357899999999999999999988888774221111 245667667777666666666666666655211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhc
Q 027099 81 DLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122 (228)
Q Consensus 81 ~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl 122 (228)
...+.-.+.+..|+...-.+|.++.. ...+.+|..+.
T Consensus 87 r~~k~q~~KL~~dF~~~L~~FQ~~Qr-----~~aekek~~~~ 123 (130)
T 2dnx_A 87 RQQRLQKERLMNDFSAALNNFQAVQR-----RVSEKEKESIA 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHH
Confidence 11222345566666666666665432 23344555554
No 39
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=51.69 E-value=22 Score=20.01 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 027099 205 DTWIKYVGMVSTVVILYFFWRW 226 (228)
Q Consensus 205 dk~I~~~~i~~~~~~i~~i~~~ 226 (228)
..+...+++.++++++|+.+|+
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf~ 28 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVYA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHHe
Confidence 3445555666666677766665
No 40
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=49.01 E-value=17 Score=23.65 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027099 208 IKYVGMVSTVVILYFFWR 225 (228)
Q Consensus 208 I~~~~i~~~~~~i~~i~~ 225 (228)
|+.||++.+++++.++++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 566777777666666665
No 41
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=47.66 E-value=21 Score=25.96 Aligned_cols=16 Identities=6% Similarity=0.360 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027099 86 KVEQVAEEAESLKESL 101 (228)
Q Consensus 86 rv~~~r~el~~l~~~~ 101 (228)
++.+.+.++++.+.-.
T Consensus 34 ~l~~vq~evdeVk~IM 49 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIM 49 (119)
T ss_dssp HHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544444
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.47 E-value=75 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=10.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhHHHh
Q 027099 3 MAVEGGGTLSEIYQSAKKLLLRARDGVEKL 32 (228)
Q Consensus 3 ~~~~~~~~~~~L~~~a~~l~~ei~~~l~~l 32 (228)
||-|-|+.+..+|.. .+.+++..+..+
T Consensus 6 ~~~~~~~~~~~~ye~---~I~~LR~qid~~ 32 (119)
T 3ol1_A 6 HHHSHMSRLGDLYEE---EMRELRRQVDQL 32 (119)
T ss_dssp -------CCTHHHHH---HHHHHHHHHHHH
T ss_pred cccCCccccHHHHHH---HHHHHHHHHHHH
Confidence 345556666666654 345555555444
No 43
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=46.71 E-value=12 Score=20.25 Aligned_cols=20 Identities=10% Similarity=0.516 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027099 205 DTWIKYVGMVSTVVILYFFW 224 (228)
Q Consensus 205 dk~I~~~~i~~~~~~i~~i~ 224 (228)
.-++=+..+.+|++++|+++
T Consensus 7 ELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 7 ELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp SSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.25 E-value=85 Score=22.71 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027099 87 VEQVAEEAESLKESLDKY 104 (228)
Q Consensus 87 v~~~r~el~~l~~~~~~~ 104 (228)
+..+...+..+..++.++
T Consensus 77 l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 334444444444444443
No 45
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=44.86 E-value=21 Score=22.26 Aligned_cols=15 Identities=13% Similarity=0.702 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027099 212 GMVSTVVILYFFWRW 226 (228)
Q Consensus 212 ~i~~~~~~i~~i~~~ 226 (228)
|++++.++++.+|+.
T Consensus 19 GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 19 GLLLLMLLILALWKI 33 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 444444445555543
No 46
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.66 E-value=21 Score=22.25 Aligned_cols=14 Identities=14% Similarity=0.755 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 027099 212 GMVSTVVILYFFWR 225 (228)
Q Consensus 212 ~i~~~~~~i~~i~~ 225 (228)
|++++.++++.+|+
T Consensus 22 GLllL~li~~~LwK 35 (54)
T 2knc_A 22 GLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444455554
No 47
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=44.15 E-value=70 Score=22.07 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hch-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 027099 48 ELSFAVKKDISQIQSLCVEMDRLWRS----IAA-KSQRDLWKRKVEQVAEEAESLKESL 101 (228)
Q Consensus 48 ~l~~~i~~~l~~l~~~i~~m~~~~~~----~~~-~s~r~~~~~rv~~~r~el~~l~~~~ 101 (228)
....+++..++++++.+++|+.-+.- .|. -+.|.. .|..++.++..++.+|
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~---~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREA---QVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44556666666666666666554442 111 012332 3455666666666555
No 48
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=49.79 E-value=4.9 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 027099 193 SVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWT 227 (228)
Q Consensus 193 ~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~~ 227 (228)
+...++-|+.+.|.++.+|++.+++++++-+|.|.
T Consensus 16 s~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~ 50 (99)
T 2lon_A 16 CVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLR 50 (99)
Confidence 55678889999999998777767677766666653
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.32 E-value=88 Score=22.34 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 50 SFAVKKDISQIQSLCVEMDRLWRSIAA-KSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 50 ~~~i~~~l~~l~~~i~~m~~~~~~~~~-~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
...+...|..+++.+..+.....++.. ..++.....+|.-++..+.=|+.+|..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455555556666555555554444321 122333334566666666666666654
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.15 E-value=93 Score=22.57 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027099 88 EQVAEEAESLKESLDK 103 (228)
Q Consensus 88 ~~~r~el~~l~~~~~~ 103 (228)
..+...+..+..++.+
T Consensus 80 ~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.13 E-value=72 Score=21.01 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027099 86 KVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 86 rv~~~r~el~~l~~~~~~~ 104 (228)
++.+...+++.|+.+++++
T Consensus 48 ~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 48 ELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555443
No 52
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=42.00 E-value=97 Score=22.45 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcC
Q 027099 78 SQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLG 123 (228)
Q Consensus 78 s~r~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~ 123 (228)
-....+...+.+|...+..|..+++. +...++..++-..+.
T Consensus 68 ~yk~~y~~l~k~Y~~~~keLd~~ik~-----qekiIdnFE~ik~lr 108 (119)
T 3etw_A 68 FYKSQYQELASKYEDALKKLEAEMEQ-----QKAVISDFEKIQALR 108 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34568888999999999999999976 445677777766663
No 53
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=41.50 E-value=91 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=33.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhHHH--hhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 027099 3 MAVEGGGTLSEIYQSAKKLLLRARDGVEK--LERLESSTSTGGYDSPELSFAVKKDISQIQSLC 64 (228)
Q Consensus 3 ~~~~~~~~~~~L~~~a~~l~~ei~~~l~~--l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i 64 (228)
||-++..-..+.++++..+...++..|.. +... -.......|+..|+++.+.+
T Consensus 8 ~~~~~~re~iEarN~aEsliy~~e~~L~e~~~~dk---------l~~eek~~I~~~i~el~~~L 62 (120)
T 2p32_A 8 HHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDK---------ISPEDKKKIEDKCDEILKWL 62 (120)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHTCTTTGGG---------SCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcc---------CCHHHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999998854 3211 11334456666666666655
No 54
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=40.98 E-value=24 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027099 208 IKYVGMVSTVVILYFFWRWTR 228 (228)
Q Consensus 208 I~~~~i~~~~~~i~~i~~~~~ 228 (228)
..+|+.++.++..+.+|+|.|
T Consensus 23 ~~IG~aVLgV~v~i~v~k~IR 43 (46)
T 2ifo_A 23 AAIGGAVLTVMVGIKVYKWVR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777777888764
No 55
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.53 E-value=80 Score=21.05 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHH
Q 027099 54 KKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESL 97 (228)
Q Consensus 54 ~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l 97 (228)
+..+.=-+..+++++..+....+|..|..|+.-..++.+|+...
T Consensus 29 dta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~V 72 (78)
T 2rpa_A 29 DSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHH
Confidence 33444456667777777788766689999987666666665543
No 56
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=39.07 E-value=93 Score=21.43 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 47 PELSFAVKKDISQIQSLCVEMDRLWRS-IAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 47 ~~l~~~i~~~l~~l~~~i~~m~~~~~~-~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
..+..++...|..+..++.. ++ .|++..+..+..-++.+..++.+|..++.-
T Consensus 9 ~~V~~D~~~ql~~l~~~~~~-----~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 9 QQVVKDTKEQLNRINNYITR-----HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887654 11 233456778888888888888888888866
No 57
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.81 E-value=34 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 59 QIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFL 106 (228)
Q Consensus 59 ~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~~~~ 106 (228)
+++.+.++||..-+..++...|.. ...+.++..|...+..++.+++.
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEA-ADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554222221 23678999999999999998765
No 58
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=38.68 E-value=40 Score=20.12 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=10.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Q 027099 200 RRNRVDTWIKYVGMVSTVVILYFFW 224 (228)
Q Consensus 200 rR~~~dk~I~~~~i~~~~~~i~~i~ 224 (228)
|+..++-++=+ +.++.|+++++|+
T Consensus 25 rqnlqelfvnf-clilicllli~ii 48 (52)
T 1fjk_A 25 RQNLQNLFINF-CLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44455554443 4444444444443
No 59
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=37.68 E-value=32 Score=19.66 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 027099 205 DTWIKYVGMVSTVVIL 220 (228)
Q Consensus 205 dk~I~~~~i~~~~~~i 220 (228)
=|+.+|.++++++.++
T Consensus 4 LKi~Vy~vV~ffvsLF 19 (38)
T 3arc_I 4 LKITVYIVVTFFVLLF 19 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeeehhHHHHHHHHH
Confidence 3666666555544433
No 60
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=37.68 E-value=1.7e+02 Score=23.90 Aligned_cols=96 Identities=4% Similarity=0.022 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHhhHHHhhhhhcC-CCCCCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch----
Q 027099 10 TLSEIYQSAKKLLLRARDGVEKLERLESS-TSTGGY--------DSPELSFAVKKDISQIQSLCVEMDRLWRSIAA---- 76 (228)
Q Consensus 10 ~~~~L~~~a~~l~~ei~~~l~~l~~~~~~-~~~~~~--------~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~---- 76 (228)
.|-++-.........|..++..|.++... ..++.. +...+..+|...+..+...|..|+..+...+.
T Consensus 45 ~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~ 124 (279)
T 2xhe_B 45 DFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTF 124 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 35555556666677778888888776422 111100 11233455666666667777777766654211
Q ss_pred ----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 77 ----KS-QRDLWKRKVEQVAEEAESLKESLDKYF 105 (228)
Q Consensus 77 ----~s-~r~~~~~rv~~~r~el~~l~~~~~~~~ 105 (228)
++ .-...+.-+..+..++..+-.+|+...
T Consensus 125 ~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q 158 (279)
T 2xhe_B 125 EDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQ 158 (279)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111223345567777777777776653
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.32 E-value=1.2e+02 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 45 DSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 45 ~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
++..++......++.+..-++.+-.+++..+. .++.+|.++..+|...+..-.+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~-----ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVL-----QLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56668888888888888888888777776544 4556677777777766655444
No 62
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=43.21 E-value=7.2 Score=27.26 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 027099 193 SVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWT 227 (228)
Q Consensus 193 ~ll~~I~rR~~~dk~I~~~~i~~~~~~i~~i~~~~ 227 (228)
+...++-|+.+.|.++.+|++.++.++++-+|.|.
T Consensus 15 ~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~ 49 (93)
T 2lom_A 15 DQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLK 49 (93)
Confidence 55678889999999998776666666666666553
No 63
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.82 E-value=33 Score=20.19 Aligned_cols=14 Identities=14% Similarity=0.755 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 027099 212 GMVSTVVILYFFWR 225 (228)
Q Consensus 212 ~i~~~~~~i~~i~~ 225 (228)
|++++.++++.+|+
T Consensus 20 GLllL~li~~~LwK 33 (42)
T 2k1a_A 20 GLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445554
No 64
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.02 E-value=1.2e+02 Score=21.89 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 44 YDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLD 102 (228)
Q Consensus 44 ~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~ 102 (228)
.+-..+...|...|-.+...+..|+.++..+.++..-+.+..++.........+-++..
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts 68 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETN 68 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999999999865544445555566555555555444443
No 65
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo sapiens}
Probab=36.02 E-value=43 Score=17.51 Aligned_cols=20 Identities=0% Similarity=0.162 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHhhH
Q 027099 10 TLSEIYQSAKKLLLRARDGV 29 (228)
Q Consensus 10 ~~~~L~~~a~~l~~ei~~~l 29 (228)
.||.|..-+.+-.++|+..+
T Consensus 2 ~WeqL~t~~~r~~neiEnqI 21 (26)
T 1ydi_B 2 GWEQLLTTIARTINEVENQI 21 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888888765
No 66
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=35.82 E-value=37 Score=19.64 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 027099 208 IKYVGMVSTVV 218 (228)
Q Consensus 208 I~~~~i~~~~~ 218 (228)
+++|++++.++
T Consensus 13 l~aG~vvvv~i 23 (39)
T 3arc_X 13 LLSGAVVLGLT 23 (39)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666655553
No 67
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=35.70 E-value=30 Score=18.10 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027099 207 WIKYVGMVSTVVILYFFWR 225 (228)
Q Consensus 207 ~I~~~~i~~~~~~i~~i~~ 225 (228)
+++.|..+.+..+-.++||
T Consensus 6 y~viG~yvg~aTvg~f~~w 24 (26)
T 2voy_D 6 YMAIGGYVGAATVGAAAWX 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhheeEEe
Confidence 4555555544444444443
No 68
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.58 E-value=46 Score=18.06 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 027099 212 GMVSTVVILYFFWRW 226 (228)
Q Consensus 212 ~i~~~~~~i~~i~~~ 226 (228)
.++.++++++++.+|
T Consensus 10 ~~i~Flil~~~l~kf 24 (34)
T 1b9u_A 10 QAIAFVLFVLFCMKY 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555565555
No 69
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.54 E-value=87 Score=19.43 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027099 87 VEQVAEEAESLKESLDKYF 105 (228)
Q Consensus 87 v~~~r~el~~l~~~~~~~~ 105 (228)
|=.++++++.|++++++++
T Consensus 12 VYaLkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777654
No 70
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=33.39 E-value=46 Score=20.40 Aligned_cols=18 Identities=6% Similarity=0.372 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027099 207 WIKYVGMVSTVVILYFFW 224 (228)
Q Consensus 207 ~I~~~~i~~~~~~i~~i~ 224 (228)
+..||.+++.++++++.+
T Consensus 31 ~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544443
No 71
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=32.63 E-value=43 Score=19.74 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027099 207 WIKYVGMVSTVVILYFF 223 (228)
Q Consensus 207 ~I~~~~i~~~~~~i~~i 223 (228)
+..||.+++.++++++.
T Consensus 23 ~~k~gt~~~~~~ll~ma 39 (43)
T 1qle_D 23 GATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 72
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.37 E-value=1.5e+02 Score=21.67 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchh------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 47 PELSFAVKKDISQIQSLCVEMDRLWRSIAAK------SQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 47 ~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~------s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
-.+..+|...|+.++.+..+...+.....++ ..+..++.-++.++.+|.+|.+.+.-
T Consensus 30 ~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 30 FVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988766544432211 22344455566666666666665543
No 73
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=31.86 E-value=52 Score=22.17 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099 201 RNRVDTWIKYVGMVSTVVILYFFWRW 226 (228)
Q Consensus 201 R~~~dk~I~~~~i~~~~~~i~~i~~~ 226 (228)
.-+.|.++..+.++++++.+.+.+|+
T Consensus 45 ggrsd~~Ly~~t~~l~~~G~~~~ly~ 70 (80)
T 2y69_J 45 GGATDNILYRVTMTLCLGGTLYSLYC 70 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccceeHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777666666665
No 74
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=31.23 E-value=1.1e+02 Score=20.04 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 48 ELSFAVKKDISQIQSLCVEMDRLWRSIAAK---SQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 48 ~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~---s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
....+|+..+..+...++.|...+...... ..-..|...+.++..-|..+...++++
T Consensus 23 ~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (99)
T 3zbh_A 23 VESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNS 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777766555542221 123456666677777777777777664
No 75
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=30.58 E-value=61 Score=20.42 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 027099 202 NRVDTWIKYVGMVSTVVILYFFWRW 226 (228)
Q Consensus 202 ~~~dk~I~~~~i~~~~~~i~~i~~~ 226 (228)
-+.|.++..+.++++++.+.+.+|+
T Consensus 25 g~sd~~Ly~~t~~l~~~g~~~~~y~ 49 (59)
T 1v54_J 25 GATDNILYRVTMTLCLGGTLYSLYC 49 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceeHHHHHHHHHHHHHHHHHHH
Confidence 4567777766666666666666554
No 76
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=30.51 E-value=48 Score=20.23 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 027099 208 IKYVGMVSTVVI 219 (228)
Q Consensus 208 I~~~~i~~~~~~ 219 (228)
+++|++++.++.
T Consensus 23 lvaG~vVvv~i~ 34 (50)
T 3bz1_X 23 LLSGAVVLGLTF 34 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665533
No 77
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.27 E-value=1.2e+02 Score=20.24 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 54 KKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 54 ~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
+..|.--.+-|+-+-..+...|.+..+..++.|+.+|-.-...++.-+.+
T Consensus 33 ~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 33 PQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555666676677888999999998888888877654
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.18 E-value=2.8e+02 Score=24.21 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCCC---CCChhhhchhHHHH-HHHHHHHHHHHHHHHHH
Q 027099 82 LWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRAN---GESSHILRIFDEEA-QAMQSVRNSSRMLQESF 157 (228)
Q Consensus 82 ~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl~~~~---~~~~~~~~~~d~~~-~~~~~L~~s~~~lde~~ 157 (228)
.++.+|+.++..|..+++....+.. .-.+=.+++.... .+++ +.+.... ....++.-..+.+++.+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~-------y~~~~~~~lk~~~~q~~dnd---n~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNT-------LTKNIVELMRGDFAKANNND---NTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777777777777777665432 1111122221111 1111 1122211 12355556666677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 158 ATGTAILAKYAEQREHLKKAQRKA 181 (228)
Q Consensus 158 ~~g~~~l~~L~~Qr~~L~~~~~kl 181 (228)
..-......|.+|+..+++.-..+
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655566677788888887766555
No 79
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=29.38 E-value=1.4e+02 Score=20.51 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027099 9 GTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRS 73 (228)
Q Consensus 9 ~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~ 73 (228)
+.+|+|-...+.=+..|..-| .|...+..| ..+.+.+.|-..+--+.+++++++.++..
T Consensus 4 s~LEdlc~hineKIs~ikk~L-~Lr~~gqdP-----~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~ 62 (91)
T 4aj5_A 4 SDLEQLCSHVNEKIGNIKKTL-SLRNCGQEP-----TLKTVLNKIGDEIIVINELLNKLELEIQY 62 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHHCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhcccCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777666666666665554 233332222 35666788888888899999999888874
No 80
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=29.35 E-value=2e+02 Score=22.66 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 027099 10 TLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEM 67 (228)
Q Consensus 10 ~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m 67 (228)
++|+++..+..|...|.+.+..+.+...-| .++.+.+...-.+.++..+.+.|
T Consensus 12 ~LEs~R~Rl~qL~~Sl~~l~~~l~~~~~lp-----~W~sll~q~~vl~~qL~sl~~~L 64 (200)
T 4h63_H 12 SLEAIRHRIAQIVQSLTHFLAILHQSESLS-----PWPTIHKNFNILLSQIHSLSNNL 64 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CcHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998887643322 67888877777777777777666
No 81
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=29.34 E-value=41 Score=22.65 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 46 SPELSFAVKKDISQIQSLCVEMDRLWRSIAAK---SQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 46 ~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~---s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
.......|+..|+++...+..|...+...... .....|....+++..-|..+...++.
T Consensus 18 i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~~ 78 (96)
T 3h6p_C 18 MAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHES 78 (96)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665555443221 23355666666666666665555544
No 82
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=29.04 E-value=1.3e+02 Score=20.11 Aligned_cols=58 Identities=3% Similarity=0.079 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 47 PELSFAVKKDISQIQSLCVEMDRLWRSIAA----------KSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 47 ~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~----------~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
.....++...-.+++..+++|+..+..+.. ......|...+.++..-|..+...++..
T Consensus 13 ~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~ 80 (101)
T 3fav_A 13 AQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQA 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666667777777666655321 1223556666666666666666666554
No 83
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=28.85 E-value=59 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHH
Q 027099 206 TWIKYVGMVSTVVI 219 (228)
Q Consensus 206 k~I~~~~i~~~~~~ 219 (228)
|+.++.|+++++++
T Consensus 4 KL~lg~Gvl~LLvi 17 (35)
T 2lk9_A 4 KLLLGIGILVLLII 17 (35)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred eeeecccHHHHHHH
Confidence 44555555554433
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.18 E-value=2.2e+02 Score=22.32 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 52 AVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 52 ~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
.++..|+.+..+|..|-.+...... +-.....+++.++.++++++.+.+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~--ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSE--KLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp ----------CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444455555555555444443211 11122234555555555555555443
No 85
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.08 E-value=1.6e+02 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 78 SQRDLWKRKVEQVAEEAESLKESLD 102 (228)
Q Consensus 78 s~r~~~~~rv~~~r~el~~l~~~~~ 102 (228)
+.|..+..+.+++..++..++++..
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665543
No 86
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.97 E-value=1.9e+02 Score=21.75 Aligned_cols=87 Identities=8% Similarity=0.008 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHH
Q 027099 9 GTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGG------YDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDL 82 (228)
Q Consensus 9 ~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~------~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~ 82 (228)
.+|+.++-...+.-..++..+..+..-+++. .++ ......+..++..+..+..-|.+++.++..-.
T Consensus 24 ~~md~~l~~rL~~Rd~~E~~~~~l~~e~~~~-~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~------- 95 (152)
T 3a7p_A 24 DSMDDLLIRRLTDRNDKEAHLNELFQDNSGA-IGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKN------- 95 (152)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4566665554555555666665554432221 000 00123344555555555555555555544311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027099 83 WKRKVEQVAEEAESLKESLDKYF 105 (228)
Q Consensus 83 ~~~rv~~~r~el~~l~~~~~~~~ 105 (228)
.-++.+++++..++-++..+.
T Consensus 96 --K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 96 --KNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 124456666666666665543
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.59 E-value=1.7e+02 Score=20.88 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027099 12 SEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIA 75 (228)
Q Consensus 12 ~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~ 75 (228)
-+|.....+|..|++.-=.+|..... +....+..++..|..+....+.|...++.+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~-------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYA-------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777765422 2345566777777777777777776666643
No 88
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.49 E-value=2e+02 Score=21.65 Aligned_cols=68 Identities=22% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhc
Q 027099 55 KDISQIQSLCVEMDRLWRSI-AAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELL 122 (228)
Q Consensus 55 ~~l~~l~~~i~~m~~~~~~~-~~~s~r~~~~~rv~~~r~el~~l~~~~~~~~~~~~~~~~~~~~R~eLl 122 (228)
..++.++.-+++.+..+..+ |..+.-...+.-+++.+.|+.+++..+.++.....+.-....++.+-+
T Consensus 76 ~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a~~~a~~k~~~~ 144 (158)
T 3tul_A 76 SVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKA 144 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444443 332333455667899999999999999988764333333444454443
No 89
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=27.47 E-value=75 Score=16.83 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027099 210 YVGMVSTVVILYFFWR 225 (228)
Q Consensus 210 ~~~i~~~~~~i~~i~~ 225 (228)
++|++.++.++-|-+|
T Consensus 9 iaglvalltflafgfw 24 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 90
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.08 E-value=1.4e+02 Score=19.73 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 48 ELSFAVKKDISQIQSLCVEMDRLWRSIAAK---SQRDLWKRKVEQVAEEAESLKESLDKYF 105 (228)
Q Consensus 48 ~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~---s~r~~~~~rv~~~r~el~~l~~~~~~~~ 105 (228)
....+|+..+..|...++.|...+...... ..-..|...+.++..-|..+...|+++-
T Consensus 22 ~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a 82 (98)
T 3gwk_C 22 AGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVA 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777666543221 2234566677777777777777777653
No 91
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.66 E-value=1.5e+02 Score=20.04 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 53 VKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 53 i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
.+..|.--.+-|+-+-..++..|.+..+..++.|+.+|..-...++..+..
T Consensus 31 y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 31 YQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455556656565666666678889999999999888888887754
No 92
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.55 E-value=1.7e+02 Score=20.50 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027099 50 SFAVKKDISQIQSLCVEMDRLWRSI-AAKSQRDLWKRKVEQVAEEAESLKESL 101 (228)
Q Consensus 50 ~~~i~~~l~~l~~~i~~m~~~~~~~-~~~s~r~~~~~rv~~~r~el~~l~~~~ 101 (228)
+.+|+..|+.+...++++...=... ..|..-...+.+++.+-.+...+-..+
T Consensus 14 v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~i 66 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKV 66 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443331 111112234445555555544444444
No 93
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=26.45 E-value=1.6e+02 Score=20.36 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHH
Q 027099 15 YQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEA 94 (228)
Q Consensus 15 ~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el 94 (228)
+.....|...+...+..+.+...-..+ ..+...|-..|+. ++..-+.+|.....+.+.-+.+ +++-.|+
T Consensus 5 ~~d~~~li~t~s~niq~l~k~~~qlGT-krD~~~LR~~l~~---~l~~~~~~L~k~~~~l~~l~qk-------eRL~~dF 73 (97)
T 1hs7_A 5 TKELSNLIETFAEQSRVLEKECTKIGS-KRDSKELRYKIET---ELIPNCTSVRDKIESNILIHQN-------GKLSADF 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-SSCCHHHHHHHHH---THHHHHHHHHHHHHHSTHHHHC-------HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHH---HHHHHHHHHHHHHHHhcccchh-------hHHHHHH
Confidence 344445555555555555544211111 1244555555540 3333444444333333221122 3455566
Q ss_pred HHHHHHHHHH
Q 027099 95 ESLKESLDKY 104 (228)
Q Consensus 95 ~~l~~~~~~~ 104 (228)
..+..+|.+.
T Consensus 74 ~~l~~~fQ~~ 83 (97)
T 1hs7_A 74 KNLKTKYQSL 83 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 94
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=25.96 E-value=1.4e+02 Score=19.49 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-------h---hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 48 ELSFAVKKDISQIQSLCVEMDRLWRSIA-------A---KSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 48 ~l~~~i~~~l~~l~~~i~~m~~~~~~~~-------~---~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
....++...-.+++..+++|+..+..+. . ......|...++++..-|..+...++..
T Consensus 12 ~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~ 78 (94)
T 3fav_B 12 AAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555432 1 1233556666666666666666666553
No 95
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=24.80 E-value=1.6e+02 Score=19.75 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 46 SPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 46 ~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
.+++..+|+++-.-.+.+-++|..--.+..| +.=..-..-+++-+.||.+|...|.-+
T Consensus 24 ~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp-aeIA~~~~~L~qAraDL~~l~r~~av~ 81 (90)
T 4b6x_A 24 GAALRQEIEDKQLMVNNLTDELQDAIDEANP-AEIANTSQQLRHARADLADLQRRFAVL 81 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccCH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777755555555555543333323 443344456788999999999888654
No 96
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=24.33 E-value=2.9e+02 Score=24.19 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 027099 7 GGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIQSLCVEM 67 (228)
Q Consensus 7 ~~~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~l~~~i~~m 67 (228)
+..++|+++..+..|...|+.....|.+.+ - ..+..+.....-.+.++..+...|
T Consensus 29 Pv~aLEslR~RL~QLt~SL~sL~~~L~~sp-L-----P~W~SLqsQfnILlsQL~SLs~~L 83 (407)
T 4gwp_C 29 PGQALDAVRMRLAQLTHSLRRIRDEMSKAE-L-----PQWYTLQSQLNVTLSQLVSVTSTL 83 (407)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHCTT-S-----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999988886542 2 157788877777777777777777
No 97
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.32 E-value=1.6e+02 Score=19.40 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 56 DISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDK 103 (228)
Q Consensus 56 ~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~ 103 (228)
.+.--.+-|+-+-..+...|++..+..++.++.+|..-...++..+..
T Consensus 32 Al~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 32 AYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555555565666678889999999999988888877654
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.88 E-value=1.6e+02 Score=19.33 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 027099 51 FAVKKDISQIQSLC 64 (228)
Q Consensus 51 ~~i~~~l~~l~~~i 64 (228)
.+.+..|.+....|
T Consensus 43 ~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 43 DELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 99
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=29.40 E-value=17 Score=21.07 Aligned_cols=10 Identities=10% Similarity=0.700 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027099 217 VVILYFFWRW 226 (228)
Q Consensus 217 ~~~i~~i~~~ 226 (228)
+.++++++.|
T Consensus 23 isLIiLi~~w 32 (39)
T 2l6w_A 23 ISLIILIMLW 32 (39)
Confidence 3333444433
No 100
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=23.24 E-value=1.7e+02 Score=23.76 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHhhhhhcCCCCCCCChhHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 027099 9 GTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKK---DISQIQSLCVEMDRLWR 72 (228)
Q Consensus 9 ~~~~~L~~~a~~l~~ei~~~l~~l~~~~~~~~~~~~~~~~l~~~i~~---~l~~l~~~i~~m~~~~~ 72 (228)
.+..+||..|.++..+|+..-. + . ..+.....|.. .+..+...++++.+...
T Consensus 31 ~~L~~lF~~a~~~~~~le~~~~--~---~-------~S~~~Q~~v~~~i~~le~~~~~v~~l~LFS~ 85 (243)
T 3qc1_A 31 PRLPELFETSKKLLEDVEVATE--P---T-------GSRTIQDKVSKGLELLEKAAGMLSQLDLFSR 85 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCS--C---T-------TSHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCC--C---C-------CCHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3899999999999887754211 0 1 22344444444 55555566766665444
No 101
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.02 E-value=1.3e+02 Score=18.07 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHh
Q 027099 11 LSEIYQSAKKLLLRARDGVEKL 32 (228)
Q Consensus 11 ~~~L~~~a~~l~~ei~~~l~~l 32 (228)
..+|-.-...|..+++.++..+
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~m 25 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTI 25 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 102
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=22.98 E-value=1.5e+02 Score=18.83 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027099 44 YDSPELSFAVKKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKY 104 (228)
Q Consensus 44 ~~~~~l~~~i~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~~~~~~ 104 (228)
+++..-...|+..|.++.++..+|..+|..-...-. ..-.-|..-...+..-..+|.++
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id--~Ie~nv~~a~~~v~~g~~eL~kA 60 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLID--SIEANVESSEVHVERASDQLQRA 60 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999986322011 11222344444555555555554
No 103
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.06 E-value=2e+02 Score=19.93 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhH
Q 027099 9 GTLSEIYQSAKKLLLRARDGV 29 (228)
Q Consensus 9 ~~~~~L~~~a~~l~~ei~~~l 29 (228)
..+++++.+...|+.+....=
T Consensus 5 ~~~e~lre~l~~le~~~~~~~ 25 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRD 25 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467788888888776665443
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.84 E-value=1.8e+02 Score=19.34 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027099 56 DISQIQSL 63 (228)
Q Consensus 56 ~l~~l~~~ 63 (228)
+|.++.++
T Consensus 60 KI~eL~el 67 (79)
T 3cvf_A 60 SLFELSEL 67 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 105
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=21.82 E-value=3e+02 Score=24.34 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc----hhhhHHHHHHHHHHHHHHHH
Q 027099 47 PELSFAVKKDISQIQSLCVEMDRLWRSIA----AKSQRDLWKRKVEQVAEEAE 95 (228)
Q Consensus 47 ~~l~~~i~~~l~~l~~~i~~m~~~~~~~~----~~s~r~~~~~rv~~~r~el~ 95 (228)
..+..-.+..|++..+++++|..++-... .+..|..+...++++++++.
T Consensus 31 iS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~ 83 (425)
T 3v47_C 31 ISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 83 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888999999888775422 23566655444444444433
No 106
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.58 E-value=1.4e+02 Score=17.81 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027099 53 VKKDISQIQSLCVEM 67 (228)
Q Consensus 53 i~~~l~~l~~~i~~m 67 (228)
++..++.++..++.|
T Consensus 3 lEekv~~Le~~ld~L 17 (46)
T 3swy_A 3 LEEKVEQLGSSLDTL 17 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 107
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.42 E-value=1.8e+02 Score=19.14 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027099 53 VKKDISQIQSLCVEMD 68 (228)
Q Consensus 53 i~~~l~~l~~~i~~m~ 68 (228)
++.+++.++..++.|.
T Consensus 5 lEEKv~~LE~sld~LQ 20 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQ 20 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 108
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=21.26 E-value=97 Score=19.80 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027099 209 KYVGMVSTVVILYFFWRW 226 (228)
Q Consensus 209 ~~~~i~~~~~~i~~i~~~ 226 (228)
+++=++.++++.+.+|||
T Consensus 13 Iv~DIi~TllLal~VY~~ 30 (63)
T 2l35_A 13 VVGDLVLTVLIALAVYFL 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334555666666677766
No 109
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.25 E-value=1.9e+02 Score=19.19 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHH
Q 027099 54 KKDISQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKE 99 (228)
Q Consensus 54 ~~~l~~l~~~i~~m~~~~~~~~~~s~r~~~~~rv~~~r~el~~l~~ 99 (228)
+..+.--.+-|+-+-..+...|.+..+..++.|+.+|.+-...++.
T Consensus 36 ~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 36 EEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555556566657788899999998877766654
Done!