Query 027101
Match_columns 228
No_of_seqs 124 out of 706
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 8.1E-45 1.8E-49 320.4 19.8 187 19-223 45-246 (318)
2 COG5058 LAG1 Protein transport 100.0 1.3E-42 2.9E-47 303.1 17.6 185 19-223 113-315 (395)
3 KOG1608 Protein transporter of 100.0 3.6E-31 7.7E-36 229.2 15.4 182 17-218 74-270 (374)
4 smart00724 TLC TRAM, LAG1 and 99.9 1.1E-25 2.4E-30 188.7 14.4 145 73-225 1-163 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.8 1.8E-20 3.8E-25 154.9 12.8 139 74-223 1-161 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.5 2.7E-07 5.8E-12 64.4 5.3 40 18-57 24-63 (65)
7 KOG4474 Uncharacterized conser 95.3 0.3 6.5E-06 42.7 11.1 126 72-211 43-187 (253)
8 KOG4561 Uncharacterized conser 36.2 20 0.00044 31.9 1.5 62 153-215 137-216 (281)
9 PRK08476 F0F1 ATP synthase sub 26.2 2.2E+02 0.0047 22.3 5.7 28 25-52 9-36 (141)
10 PRK13454 F0F1 ATP synthase sub 25.2 3.8E+02 0.0083 21.9 7.5 27 27-53 35-61 (181)
11 PLN00174 predicted protein; Pr 20.8 3E+02 0.0066 22.5 5.5 30 185-214 110-140 (160)
12 PF05026 DCP2: Dcp2, box A dom 20.1 1.1E+02 0.0024 22.3 2.6 46 117-163 15-65 (85)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-45 Score=320.41 Aligned_cols=187 Identities=46% Similarity=0.869 Sum_probs=173.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHHhhHHHHHHHHHhhhhheeeee
Q 027101 19 AYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTYD 98 (228)
Q Consensus 19 ~~~Dl~~~~~~a~~~~~lR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~~~~~~~Kf~Es~w~~~~y~~s~~~g~~vl~~ 98 (228)
+..|.++..+++...+..|....-.+..|...+.+..++ .+.+||+||+|+++||++++++|++++++
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------------~~~~k~~Es~Wk~~yy~~s~~~glyV~~~ 112 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTAD------------RRKKKFCESAWKFLYYLVSWIFGLYVMYH 112 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCc------------hhhhhhHHHHHHHHHHHHHHHHhhhheec
Confidence 578999999999999999988877777777777654331 22399999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh----
Q 027101 99 EPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIF---- 174 (228)
Q Consensus 99 ~pw~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e~kRkDf~~m~~HHi~Ti~Li~~SY~~---- 174 (228)
+||+.|++.+|.+ ||+++++.++|+||++|.|||.|+++. ++.|++||||+||++||++|+.||++||++
T Consensus 113 ~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~a-l~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R 186 (318)
T KOG1607|consen 113 EPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFA-LFLDEKRKDFWEMVVHHVVTLILISLSYVFNFTR 186 (318)
T ss_pred chhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 999999999999999999999999996 679999999999999999999999999999
Q ss_pred -----------hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 027101 175 -----------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTRS 223 (228)
Q Consensus 175 -----------sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il~s~~~ 223 (228)
||++||++|++||.+.+.+|+.+|++|+.+|+++||+.+|+|+++|+..
T Consensus 187 ~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~ 246 (318)
T KOG1607|consen 187 VGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSR 246 (318)
T ss_pred ccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999984
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-42 Score=303.15 Aligned_cols=185 Identities=30% Similarity=0.545 Sum_probs=174.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHHhhHHHHHHHHHhhhhheeeee
Q 027101 19 AYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTYD 98 (228)
Q Consensus 19 ~~~Dl~~~~~~a~~~~~lR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~~~~~~~Kf~Es~w~~~~y~~s~~~g~~vl~~ 98 (228)
|..|++++++++++++.+|..++..+++|++..++++. ++|++|||||+|.++||++++.+|+|++++
T Consensus 113 G~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmrs 180 (395)
T COG5058 113 GILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMRS 180 (395)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEec
Confidence 68999999999999999999999999999999988764 588999999999999999999999999999
Q ss_pred CC-CCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHH--HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-
Q 027101 99 EP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLSYIF- 174 (228)
Q Consensus 99 ~p-w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~--~~~~~f~e~kRkDf~~m~~HHi~Ti~Li~~SY~~- 174 (228)
+| |+.|++.+|.+ ||+...|..+|.||++|+|||.++ ++. ++.|++||||+||+.||++|++||..||.+
T Consensus 181 s~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~fh 254 (395)
T COG5058 181 SPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVFH 254 (395)
T ss_pred CcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 77799999998 999999999999999999999999 443 568999999999999999999999999998
Q ss_pred --------------hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 027101 175 --------------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTRS 223 (228)
Q Consensus 175 --------------sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il~s~~~ 223 (228)
||++|+.+|++||++. .+|+..|++|+.+|++.|+++. ++|+|+++-
T Consensus 255 ftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vlt 315 (395)
T COG5058 255 FTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVLT 315 (395)
T ss_pred HHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 9999999999999997 8899999999999999999877 489998875
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.6e-31 Score=229.24 Aligned_cols=182 Identities=19% Similarity=0.382 Sum_probs=172.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHHhhHHHHHHHHHhhhhheee
Q 027101 17 YPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVT 96 (228)
Q Consensus 17 ~p~~~Dl~~~~~~a~~~~~lR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~~~~~~~Kf~Es~w~~~~y~~s~~~g~~vl 96 (228)
+.|++|+..+++|+++.+++|+++||++++++.++++++| .|..||+||+....||..|.+||.+++
T Consensus 74 ~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~il 140 (374)
T KOG1608|consen 74 YYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFYIL 140 (374)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhheee
Confidence 4488999999999999999999999999999999999886 788999999999999999999999999
Q ss_pred eeCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh--
Q 027101 97 YDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIF-- 174 (228)
Q Consensus 97 ~~~pw~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e~kRkDf~~m~~HHi~Ti~Li~~SY~~-- 174 (228)
..|++..|+++.|.| |||++|+..+|+||+.|+|||+|++++++|+..||+|......|-+..+..|+++|..
T Consensus 141 i~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYllnl 215 (374)
T KOG1608|consen 141 ISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLNL 215 (374)
T ss_pred eecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred -------------hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 027101 175 -------------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWIL 218 (228)
Q Consensus 175 -------------sDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~il 218 (228)
++.+.|+++++.+.+.+ .+.+|.+|+.+|+..|+.....-++
T Consensus 216 ~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaVl 270 (374)
T KOG1608|consen 216 NRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAVL 270 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999966 7889999999999999988765444
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.93 E-value=1.1e-25 Score=188.69 Aligned_cols=145 Identities=34% Similarity=0.651 Sum_probs=133.2
Q ss_pred HHHHHhhHHHHHHHHHhhhhheeeeeCCCCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH-Hhhccc
Q 027101 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (228)
Q Consensus 73 ~Kf~Es~w~~~~y~~s~~~g~~vl~~~pw~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~~~-f~e~kR 151 (228)
+|++|+.||+++|+.+++.|.+++..++|++|+. .+ +|.++.++..+++|.+|+||++++++... +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988887 44 89999999999999999999999998655 679999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh---------------hhhhhhhhhhhhhccch--hhhhHHHHHHHHHHHHHHHHHHH
Q 027101 152 ADFGVSMGHHVATVILIVLSYIF---------------SDVFLEIGKMSKYIGAE--GIASLSFILFVLSWILLRLIYYP 214 (228)
Q Consensus 152 kDf~~m~~HHi~Ti~Li~~SY~~---------------sDi~L~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p 214 (228)
||++||++||++|++++..||.. ||++++.+|++++++.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977 99999999999999974 67899999999999999999999
Q ss_pred HHhhhhhcccc
Q 027101 215 FWILWSTRSVK 225 (228)
Q Consensus 215 ~~il~s~~~~~ 225 (228)
+.+++......
T Consensus 153 ~~~~~~~~~~~ 163 (205)
T smart00724 153 FLILTVTVHYA 163 (205)
T ss_pred HHHHHHHhhhh
Confidence 98887766543
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.84 E-value=1.8e-20 Score=154.89 Aligned_cols=139 Identities=26% Similarity=0.643 Sum_probs=121.5
Q ss_pred HHHHhhHHHHHHHHHhhhhheeeeeCCCCCChhhhhcCCCCCCCCCCcc---chhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 027101 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKI---KLKLKGVYMYAAGFYTYSIFALMFWETR 150 (228)
Q Consensus 74 Kf~Es~w~~~~y~~s~~~g~~vl~~~pw~~d~~~~w~~~~~~~~P~~~~---~~~~~~yYl~q~afy~~~~~~~~f~e~k 150 (228)
||.|+++.++++++++++|++++.++| ++|.+ ||+.+. +...+.++.+++||+++++...+..+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 789999999999999999999999998 56665 555443 4588899999999999999977767888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh---------------hhhhhhhhhhhhhc-cc-hhhhhHHH--HHHHHHHHHHHHH
Q 027101 151 RADFGVSMGHHVATVILIVLSYIF---------------SDVFLEIGKMSKYI-GA-EGIASLSF--ILFVLSWILLRLI 211 (228)
Q Consensus 151 RkDf~~m~~HHi~Ti~Li~~SY~~---------------sDi~L~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~ 211 (228)
|+|+++|++||++|+.++..||.. ||++|+..|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999976 99999999999999 55 46677888 9999999999999
Q ss_pred HHHHHhhhhhcc
Q 027101 212 YYPFWILWSTRS 223 (228)
Q Consensus 212 ~~p~~il~s~~~ 223 (228)
.+|+.+.+....
T Consensus 150 ~~~~~~~~~~~~ 161 (198)
T PF03798_consen 150 LFPYLIYWVYWD 161 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999877776654
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.49 E-value=2.7e-07 Score=64.40 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=37.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 027101 18 PAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKG 57 (228)
Q Consensus 18 p~~~Dl~~~~~~a~~~~~lR~~~~~~v~~pl~~~l~~~k~ 57 (228)
.|++|++++++++++++++|.+++++|++|+||++|++|+
T Consensus 24 ~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~ 63 (65)
T PF08390_consen 24 KGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKK 63 (65)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999999998763
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.3 Score=42.68 Aligned_cols=126 Identities=19% Similarity=0.344 Sum_probs=82.1
Q ss_pred HHHHHHhhHHHHHHHHHhhhhheeeeeCC-CCCChhhhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 027101 72 IRKFNESAWKCVYFLTAELLALSVTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (228)
Q Consensus 72 ~~Kf~Es~w~~~~y~~s~~~g~~vl~~~p-w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e~k 150 (228)
..||....=.++.-+++..+..+.+.+.| -+-|+-.++-. .. ..--+..+||-++.+.-. ..+++
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~----------~~---~~l~~fS~gYfiyD~vDm-~~~~~ 108 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL----------SA---YQLLLFSAGYFIYDLVDM-LMNEQ 108 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh----------hh---HHHHHHHHHHHHHHHHHH-Hhcch
Confidence 45666666667777777777777776666 23344333211 11 223356889999999864 45666
Q ss_pred cchhHHHHHHHHHHHHHHHHH--------HHh-------hhhhhhhhhhhhhccchh---hhhHHHHHHHHHHHHHHHH
Q 027101 151 RADFGVSMGHHVATVILIVLS--------YIF-------SDVFLEIGKMSKYIGAEG---IASLSFILFVLSWILLRLI 211 (228)
Q Consensus 151 RkDf~~m~~HHi~Ti~Li~~S--------Y~~-------sDi~L~~aK~~~y~~~~~---~~~~~F~~f~~~w~~~Rl~ 211 (228)
-.+.+|.+.||++++.=.+.. |.. ++||||.=++.+-.+.++ .-.+.-.+-.++++..|++
T Consensus 109 s~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 109 SELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 779999999999976533222 111 999999998888877543 1233444557788888884
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=36.22 E-value=20 Score=31.94 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh----------------hhhhhhhhhhhhhccchhh-hh-HHHHHHHHHHHHHHHHHHH
Q 027101 153 DFGVSMGHHVATVILIVLSYIF----------------SDVFLEIGKMSKYIGAEGI-AS-LSFILFVLSWILLRLIYYP 214 (228)
Q Consensus 153 Df~~m~~HHi~Ti~Li~~SY~~----------------sDi~L~~aK~~~y~~~~~~-~~-~~F~~f~~~w~~~Rl~~~p 214 (228)
--.+|++||++.++.+ +.+.. |-+|+.....+.-++.++. .. +==.+..++|+..|+..+|
T Consensus 137 ~~~~fviHh~~s~~~v-~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~ 215 (281)
T KOG4561|consen 137 GGIEFVIHHIASLVFV-GCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWP 215 (281)
T ss_pred cCeeEEeeHHHHhhhh-eeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHH
Confidence 3459999999982111 11111 7788888877766665531 11 1113567899999999888
Q ss_pred H
Q 027101 215 F 215 (228)
Q Consensus 215 ~ 215 (228)
.
T Consensus 216 ~ 216 (281)
T KOG4561|consen 216 Y 216 (281)
T ss_pred H
Confidence 5
No 9
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.18 E-value=2.2e+02 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027101 25 VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (228)
Q Consensus 25 ~~~~~a~~~~~lR~~~~~~v~~pl~~~l 52 (228)
..++-.+.+.++=.++.+++++|+.+.+
T Consensus 9 ~~~~qli~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 9 LMLATFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778888899998875
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.16 E-value=3.8e+02 Score=21.90 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027101 27 PLFALYFPSVRFFLEKFVFEKVAKRWI 53 (228)
Q Consensus 27 ~~~a~~~~~lR~~~~~~v~~pl~~~l~ 53 (228)
+...+.+.++=+++.+++++|+.+-+.
T Consensus 35 ~~~lI~F~iL~~ll~k~l~~PI~~~l~ 61 (181)
T PRK13454 35 FWLLVTLVAIYFVLTRVALPRIGAVLA 61 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777788899999998763
No 11
>PLN00174 predicted protein; Provisional
Probab=20.82 E-value=3e+02 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=17.3
Q ss_pred hhhccchhhhhHHHHHHHHHHHHH-HHHHHH
Q 027101 185 SKYIGAEGIASLSFILFVLSWILL-RLIYYP 214 (228)
Q Consensus 185 ~~y~~~~~~~~~~F~~f~~~w~~~-Rl~~~p 214 (228)
++.-+.+.....+|-+......+. |++.-|
T Consensus 110 L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~~ 140 (160)
T PLN00174 110 LSRELRVIKAKSAFFIIIVIYTIWEWMIWVP 140 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444556666666655555555 776655
No 12
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=20.15 E-value=1.1e+02 Score=22.28 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHhh-----cccchhHHHHHHHHH
Q 027101 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFWE-----TRRADFGVSMGHHVA 163 (228)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e-----~kRkDf~~m~~HHi~ 163 (228)
-|....+...+.++.+|.|+|...=+. .-.+ ..-|+|.+++.+|+-
T Consensus 15 ~P~eel~~~eRl~FqiE~AhWfY~Df~-~~~~p~Lp~~~lk~F~~~if~~cp 65 (85)
T PF05026_consen 15 LPEEELSSFERLCFQIEEAHWFYEDFY-REQNPSLPSMSLKEFAKQIFQHCP 65 (85)
T ss_dssp S-CCCST-HHHHHHHHHHHHHHHHHTT-TTTTTTS----HHHHHHHHHTT-G
T ss_pred CCHHHHccHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCCHHHHHHHHHHHCH
Confidence 688888888999999999999865321 1111 223688888888854
Done!