Query 027101
Match_columns 228
No_of_seqs 124 out of 706
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b9u_A Protein (ATP synthase); 15.8 1.6E+02 0.0056 16.1 4.1 26 27-52 8-33 (34)
2 2qkl_B SPAC19A8.12 protein, SP 12.9 1.6E+02 0.0054 20.9 3.0 49 117-166 23-76 (95)
3 2ql9_B Caspase-7; cysteine pro 6.6 3.1E+02 0.011 18.8 2.5 26 134-159 32-57 (97)
4 2dko_B Caspase-3; low barrier 6.1 3.4E+02 0.012 19.0 2.5 26 134-159 38-63 (103)
5 2a6t_A SPAC19A8.12; alpha/beta 5.9 4.1E+02 0.014 21.8 3.3 46 117-163 28-78 (271)
6 2kjn_A LAH4; amphipathic pepti 5.4 1.5E+02 0.0051 15.5 0.1 13 156-168 6-18 (26)
7 1pyo_B Caspase-2; apoptosis, c 5.0 4.3E+02 0.015 18.4 2.5 25 134-159 36-61 (105)
8 2xzd_B Caspase-3; hydrolase-pr 4.9 4E+02 0.014 19.2 2.4 26 134-159 37-62 (118)
9 1qtn_B Caspase-8; apoptosis, d 4.8 4.9E+02 0.017 17.8 2.7 26 134-159 34-60 (95)
10 3rjm_B Caspase-2; caspase-2, c 4.8 4.2E+02 0.014 19.1 2.4 26 134-159 37-62 (117)
No 1
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=15.75 E-value=1.6e+02 Score=16.15 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027101 27 PLFALYFPSVRFFLEKFVFEKVAKRW 52 (228)
Q Consensus 27 ~~~a~~~~~lR~~~~~~v~~pl~~~l 52 (228)
+..++.+.++=.++.+++.+|+.+-+
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455677777788899999988753
No 2
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=12.89 E-value=1.6e+02 Score=20.86 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=34.3
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHhh-----cccchhHHHHHHHHHHHH
Q 027101 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFWE-----TRRADFGVSMGHHVATVI 166 (228)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e-----~kRkDf~~m~~HHi~Ti~ 166 (228)
-|....+...+.++.+|.|+|...=+. .-.+ -.-|||.+++.+|+-.+-
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~-~~~np~Lp~~~lk~F~~~if~~cp~L~ 76 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPLLW 76 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccc-cccCCCCCCCcHHHHHHHHHHhCHHHH
Confidence 687778888899999999999765321 1011 123689999999865543
No 3
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=6.60 E-value=3.1e+02 Score=18.84 Aligned_cols=26 Identities=0% Similarity=0.112 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH
Q 027101 134 AGFYTYSIFALMFWETRRADFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRkDf~~m~~ 159 (228)
.++|++++...+-...++.|..+|+.
T Consensus 32 GSwfIq~Lc~~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 32 GSWFVQALCSILEEHGKDLEIMQILT 57 (97)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCCCcHHHHHH
Confidence 46678888864323356778877764
No 4
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=6.11 E-value=3.4e+02 Score=18.95 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH
Q 027101 134 AGFYTYSIFALMFWETRRADFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRkDf~~m~~ 159 (228)
.++|++++...+-...++.|..+|+.
T Consensus 38 GSwfIq~Lc~~l~~~~~~~dl~~ilT 63 (103)
T 2dko_B 38 GSWFIQSLCAMLKQYADKLEFMHILT 63 (103)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCcccHHHHHH
Confidence 46778888864323356778887764
No 5
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=5.88 E-value=4.1e+02 Score=21.75 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=34.4
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHh-----hcccchhHHHHHHHHH
Q 027101 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHVA 163 (228)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~-----e~kRkDf~~m~~HHi~ 163 (228)
-|........+.++.+|.|+|.+.=+. .-. ...+++|...+.||.-
T Consensus 28 ~p~~~~~~~~~~~f~ie~a~wfy~d~~-~~~~~~~p~~~~~~f~~~~f~~~~ 78 (271)
T 2a6t_A 28 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCP 78 (271)
T ss_dssp SCGGGTTCHHHHHHHHHHHHHHHHHTH-HHHCSSSCCCCHHHHHHHHHTTCH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHhh-hhcccCCCcccHHHHHHHHhhhhh
Confidence 677777778899999999999877441 111 1346789999999987
No 6
>2kjn_A LAH4; amphipathic peptide, de novo protein; NMR {Artificial gene} PDB: 2kjo_A
Probab=5.36 E-value=1.5e+02 Score=15.53 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 027101 156 VSMGHHVATVILI 168 (228)
Q Consensus 156 ~m~~HHi~Ti~Li 168 (228)
.+.+||++.+.|-
T Consensus 6 alalhhlahlalh 18 (26)
T 2kjn_A 6 ALALHHLAHLALH 18 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888877764
No 7
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=4.99 E-value=4.3e+02 Score=18.42 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhh-cccchhHHHHH
Q 027101 134 AGFYTYSIFALMFWE-TRRADFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e-~kRkDf~~m~~ 159 (228)
.++|++++... +.+ .++.|..+|+.
T Consensus 36 GSwFIq~Lc~~-l~~~~~~~dl~~ilt 61 (105)
T 1pyo_B 36 GSWYIEALAQV-FSERACDMHVADMLV 61 (105)
T ss_dssp EEHHHHHHHHH-HHHHTTTSCHHHHHH
T ss_pred CCHHHHHHHHH-HHHHCCCCCHHHHHH
Confidence 46677888753 333 56678777764
No 8
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=4.91 E-value=4e+02 Score=19.19 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH
Q 027101 134 AGFYTYSIFALMFWETRRADFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRkDf~~m~~ 159 (228)
.++|++++...+-...++.|..+|+.
T Consensus 37 GSwFIQ~Lc~vl~~~~~~~dl~~ilT 62 (118)
T 2xzd_B 37 GSWFIQSLCAMLKQYADKLEFMHILT 62 (118)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCccHHHHHHHHHHhCCcccHHHHHH
Confidence 46677888864323357778888764
No 9
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=4.80 E-value=4.9e+02 Score=17.78 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhcccc-hhHHHHH
Q 027101 134 AGFYTYSIFALMFWETRRA-DFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRk-Df~~m~~ 159 (228)
.++|++++...+-...++. |..+|+.
T Consensus 34 GSwfIq~Lc~~l~~~~~~~~dl~~ilt 60 (95)
T 1qtn_B 34 GTWYIQSLCQSLRERCPRGDDILTILT 60 (95)
T ss_dssp EEHHHHHHHHHHHHHGGGTCCHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCccccHHHHHH
Confidence 3567778875332224555 8777764
No 10
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=4.78 E-value=4.2e+02 Score=19.08 Aligned_cols=26 Identities=4% Similarity=0.012 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH
Q 027101 134 AGFYTYSIFALMFWETRRADFGVSMG 159 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRkDf~~m~~ 159 (228)
.++|++++...+-...++.|..+|+.
T Consensus 37 GSwFIQ~Lc~vl~~~~~~~dLl~ilT 62 (117)
T 3rjm_B 37 GSWYIEALAQVFSERACDMHVADMLV 62 (117)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCCHHHHHH
Confidence 46677787754333345667777654
Done!