Query 027101
Match_columns 228
No_of_seqs 124 out of 706
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027101.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027101hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qklb1 a.242.1.1 (B:2-91) mRN 16.5 37 0.0027 22.3 2.2 47 117-164 22-73 (90)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 8.7 2.4E+02 0.018 17.8 5.3 16 7-22 9-24 (100)
3 d1mn8a_ a.61.1.6 (A:) MMLV mat 5.3 2.4E+02 0.017 18.3 3.0 16 67-82 28-43 (95)
4 d1ml8a_ d.227.1.2 (A:) Hypothe 3.8 3.2E+02 0.023 17.6 2.9 27 15-41 31-57 (134)
5 d2dara1 g.39.1.3 (A:53-84) PDZ 3.5 1.4E+02 0.01 15.5 0.5 7 1-7 12-18 (32)
6 d1uhua_ a.61.1.6 (A:) Product 3.5 3.7E+02 0.027 17.6 2.8 16 67-82 31-46 (105)
7 d3bqoa1 a.146.1.1 (A:62-265) T 3.3 2.7E+02 0.02 20.5 2.1 23 134-157 18-40 (204)
8 d2epqa1 g.37.1.1 (A:380-411) P 3.1 2.4E+02 0.017 14.3 1.1 7 148-154 12-18 (32)
9 d1n2fa_ d.227.1.1 (A:) Organic 3.0 4.5E+02 0.033 16.9 3.1 28 15-42 44-71 (142)
10 d1h6pa_ a.146.1.1 (A:) TRF2 {H 3.0 3E+02 0.022 20.3 2.1 20 136-156 17-36 (203)
No 1
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=16.49 E-value=37 Score=22.31 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=33.3
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHhh-----cccchhHHHHHHHHHH
Q 027101 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFWE-----TRRADFGVSMGHHVAT 164 (228)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~~~f~e-----~kRkDf~~m~~HHi~T 164 (228)
-|......-.+.++.+|.|+|.+.=+. .-.+ -.-|||.+++.+|+-.
T Consensus 22 ~P~eel~~~~rl~FqiE~A~WfY~Df~-~~~~p~Lp~~~~~~Fa~~if~~cp~ 73 (90)
T d2qklb1 22 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPL 73 (90)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHHh-hhccCCCCCCcHHHHHHHHHHHCHH
Confidence 687778888999999999999876431 1111 1226899998888643
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.73 E-value=2.4e+02 Score=17.78 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=11.4
Q ss_pred ccccccCCCCCCCCCc
Q 027101 7 VKSVNWEQESYPAYED 22 (228)
Q Consensus 7 ~~~~~~~~~~~p~~~D 22 (228)
|-+.++|+...|..++
T Consensus 9 ~~ql~fqd~as~~a~~ 24 (100)
T d3dtub2 9 PGGTGFQPSASPVATQ 24 (100)
T ss_dssp TTCCSCCCCCSHHHHH
T ss_pred CCCcCCCCCCCHHHHH
Confidence 7778888877775443
No 3
>d1mn8a_ a.61.1.6 (A:) MMLV matrix protein {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=5.29 E-value=2.4e+02 Score=18.30 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHhhHHH
Q 027101 67 ERKKKIRKFNESAWKC 82 (228)
Q Consensus 67 ~~~~~~~Kf~Es~w~~ 82 (228)
.|+++...||++-|-.
T Consensus 28 vkk~~l~t~C~seWPt 43 (95)
T d1mn8a_ 28 VKKRRWVTFCSAEWPT 43 (95)
T ss_dssp CCHHHHHHHHHTTGGG
T ss_pred ecccchhhhhcccCCc
Confidence 4679999999999975
No 4
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=3.76 E-value=3.2e+02 Score=17.62 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=21.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHH
Q 027101 15 ESYPAYEDFAVLPLFALYFPSVRFFLE 41 (228)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~lR~~~~ 41 (228)
..-|.|.|+++.-..++..+.++.+.+
T Consensus 31 ~~gp~P~elllaal~~C~~~~~~~~a~ 57 (134)
T d1ml8a_ 31 DKAPSPMEMVLMAAGGCSAIDVVSILQ 57 (134)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999999888888887876654
No 5
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.52 E-value=1.4e+02 Score=15.47 Aligned_cols=7 Identities=57% Similarity=0.885 Sum_probs=4.0
Q ss_pred Ccccccc
Q 027101 1 MGFVELV 7 (228)
Q Consensus 1 ~~~~~~~ 7 (228)
|||||--
T Consensus 12 ~gFVEE~ 18 (32)
T d2dara1 12 IGFVEEK 18 (32)
T ss_dssp SCBEESS
T ss_pred cceeeec
Confidence 5666643
No 6
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=3.51 E-value=3.7e+02 Score=17.63 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhhHHH
Q 027101 67 ERKKKIRKFNESAWKC 82 (228)
Q Consensus 67 ~~~~~~~Kf~Es~w~~ 82 (228)
.|+++...||++-|-.
T Consensus 31 vkkgkl~tfC~seWPt 46 (105)
T d1uhua_ 31 IKKGPWRTFCASEWPT 46 (105)
T ss_dssp CCHHHHHHHHHHTSTT
T ss_pred ccccceeeeecccCcc
Confidence 4678999999999864
No 7
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.26 E-value=2.7e+02 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhcccchhHHH
Q 027101 134 AGFYTYSIFALMFWETRRADFGVS 157 (228)
Q Consensus 134 ~afy~~~~~~~~f~e~kRkDf~~m 157 (228)
+-||.|+++. .|.+.+..||.+-
T Consensus 18 ldfyf~~ac~-aFR~~r~~dFr~~ 40 (204)
T d3bqoa1 18 LDFLCLSLCR-AFRDGRSEDFRRT 40 (204)
T ss_dssp HHHHHHHHHH-HHHHTCHHHHHHH
T ss_pred HHHHHHHHHH-HHHccCHHHHHHH
Confidence 4578888884 7888888888754
No 8
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.10 E-value=2.4e+02 Score=14.27 Aligned_cols=7 Identities=29% Similarity=0.320 Sum_probs=4.1
Q ss_pred hcccchh
Q 027101 148 ETRRADF 154 (228)
Q Consensus 148 e~kRkDf 154 (228)
.-||||-
T Consensus 12 rfkrkdr 18 (32)
T d2epqa1 12 RFKRKDR 18 (32)
T ss_dssp ECSCHHH
T ss_pred Hhhcccc
Confidence 4467763
No 9
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=3.01 E-value=4.5e+02 Score=16.87 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=21.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 027101 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (228)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~lR~~~~~ 42 (228)
..-|.|.|++..-..+|..+.++.+.++
T Consensus 44 ~~g~~P~elllaalasC~~~t~~~~a~~ 71 (142)
T d1n2fa_ 44 GAATNPEQLFAAGYSACFIGAMKFVAGQ 71 (142)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999998888877778777654
No 10
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.97 E-value=3e+02 Score=20.30 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccchhHH
Q 027101 136 FYTYSIFALMFWETRRADFGV 156 (228)
Q Consensus 136 fy~~~~~~~~f~e~kRkDf~~ 156 (228)
||.++++ ..|.+.+..||.+
T Consensus 17 fy~~~~c-~aFr~~~~~dF~~ 36 (203)
T d1h6pa_ 17 FYFHEAL-RAFRGSRYGDFRQ 36 (203)
T ss_dssp HHHHHHH-HHHHTTCHHHHHH
T ss_pred HHHHHHH-HHHHccCHHHHHH
Done!