Query 027102
Match_columns 228
No_of_seqs 147 out of 1434
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1.3E-65 2.9E-70 424.9 18.8 223 2-227 97-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 2.1E-50 4.6E-55 334.4 21.0 210 2-225 25-243 (321)
3 PF00191 Annexin: Annexin; In 99.8 4.2E-19 9.1E-24 117.9 8.6 66 158-223 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 1.7E-17 3.7E-22 110.1 7.2 62 1-65 5-66 (66)
5 smart00335 ANX Annexin repeats 99.6 2.3E-15 5E-20 95.4 6.3 53 13-65 1-53 (53)
6 smart00335 ANX Annexin repeats 99.6 8E-15 1.7E-19 92.9 6.4 53 171-223 1-53 (53)
7 PF13766 ECH_C: 2-enoyl-CoA Hy 60.7 28 0.00062 25.3 5.4 48 101-148 35-90 (118)
8 PF14003 YlbE: YlbE-like prote 56.4 16 0.00035 23.7 2.9 32 181-212 17-48 (65)
9 PF14003 YlbE: YlbE-like prote 56.3 38 0.00083 22.0 4.7 48 19-66 13-61 (65)
10 COG5118 BDP1 Transcription ini 44.5 45 0.00097 29.5 4.7 57 82-141 370-429 (507)
11 PF13720 Acetyltransf_11: Udp 42.1 22 0.00048 24.2 2.1 21 25-45 27-47 (83)
12 PRK10969 DNA polymerase III su 41.8 69 0.0015 21.4 4.2 36 186-221 17-53 (75)
13 PF01992 vATP-synt_AC39: ATP s 40.2 2.3E+02 0.005 24.0 8.8 47 158-206 173-220 (337)
14 KOG1086 Cytosolic sorting prot 37.0 2.8E+02 0.006 25.4 8.4 59 135-199 239-297 (594)
15 PF04675 DNA_ligase_A_N: DNA l 35.7 1.7E+02 0.0036 22.4 6.5 66 55-121 87-158 (177)
16 KOG0859 Synaptobrevin/VAMP-lik 35.7 1.5E+02 0.0032 23.9 5.9 64 27-91 76-140 (217)
17 PF09888 DUF2115: Uncharacteri 34.5 2.2E+02 0.0047 22.1 9.0 77 17-93 8-91 (163)
18 PF00427 PBS_linker_poly: Phyc 34.1 1.1E+02 0.0024 22.9 4.9 65 33-97 13-86 (131)
19 KOG2543 Origin recognition com 33.5 1.3E+02 0.0027 27.1 5.8 79 84-164 247-326 (438)
20 PF00249 Myb_DNA-binding: Myb- 31.8 1.1E+02 0.0024 17.9 5.6 34 83-116 7-42 (48)
21 PF13801 Metal_resist: Heavy-m 31.0 1.6E+02 0.0035 20.4 5.4 88 20-115 36-124 (125)
22 PF05396 Phage_T7_Capsid: Phag 30.9 2.1E+02 0.0046 21.1 5.7 56 144-209 48-103 (123)
23 cd01047 ACSF Aerobic Cyclase S 30.7 58 0.0013 27.9 3.2 57 172-228 10-76 (323)
24 KOG0031 Myosin regulatory ligh 28.5 2.8E+02 0.0061 21.5 7.8 21 21-41 21-41 (171)
25 COG0817 RuvC Holliday junction 27.2 3E+02 0.0064 21.3 6.6 37 144-180 85-121 (160)
26 KOG0859 Synaptobrevin/VAMP-lik 26.6 1.7E+02 0.0038 23.5 5.0 48 109-156 75-123 (217)
27 TIGR02029 AcsF magnesium-proto 26.5 67 0.0015 27.7 2.9 57 172-228 20-86 (337)
28 PF12098 DUF3574: Protein of u 25.5 58 0.0013 23.3 2.0 19 27-45 73-91 (104)
29 PF13043 DUF3903: Domain of un 25.0 67 0.0015 18.2 1.8 16 189-204 10-25 (40)
30 COG4800 Predicted transcriptio 24.8 2.3E+02 0.005 21.5 5.1 23 161-183 44-66 (170)
31 smart00717 SANT SANT SWI3, AD 24.8 1.4E+02 0.003 16.7 5.0 34 84-117 8-42 (49)
32 CHL00185 ycf59 magnesium-proto 23.9 78 0.0017 27.5 2.8 57 172-228 26-92 (351)
33 KOG4329 DNA-binding protein [G 23.8 76 0.0016 28.0 2.8 58 140-206 244-301 (445)
34 PF14630 ORC5_C: Origin recogn 23.4 4.3E+02 0.0093 22.0 7.3 63 138-200 135-204 (271)
35 PF13062 DUF3924: Protein of u 22.6 92 0.002 19.2 2.2 22 186-207 13-34 (62)
36 cd00167 SANT 'SWI3, ADA2, N-Co 22.0 1.5E+02 0.0033 16.2 4.9 33 84-116 6-39 (45)
37 PF12645 HTH_16: Helix-turn-he 21.7 1.5E+02 0.0033 19.0 3.3 25 1-31 3-27 (65)
38 COG5173 SEC6 Exocyst complex s 21.6 4.8E+02 0.01 24.7 7.5 77 16-98 293-370 (742)
39 KOG1014 17 beta-hydroxysteroid 21.0 34 0.00074 29.4 0.1 46 179-224 76-123 (312)
40 PF13921 Myb_DNA-bind_6: Myb-l 20.7 2.1E+02 0.0045 17.5 3.8 37 84-123 5-41 (60)
41 PRK13654 magnesium-protoporphy 20.6 1E+02 0.0022 26.9 2.9 57 172-228 30-96 (355)
42 COG1753 Predicted antotoxin, c 20.4 2E+02 0.0044 19.0 3.6 45 156-200 23-67 (74)
43 PF11159 DUF2939: Protein of u 20.3 1.9E+02 0.0042 19.8 3.9 51 150-208 7-57 (95)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-65 Score=424.90 Aligned_cols=223 Identities=37% Similarity=0.558 Sum_probs=218.8
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHHhhhccCCchhhCHHHH
Q 027102 2 AKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAA 81 (228)
Q Consensus 2 l~~A~kg~~~~gtde~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~ll~~~r~e~~~i~~~~~ 81 (228)
|++|||| +||||++||||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.++++.|+|...||+..+
T Consensus 97 l~~amkg---~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la 173 (321)
T KOG0819|consen 97 LKKAMKG---LGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALA 173 (321)
T ss_pred HHHHHhc---cCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHH
Confidence 7899999 9999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHhhhcCCC-CHHHHHHHhhcCCHHHHHHHHHHHHHhhCCChHHhhhhcccCcHHHHHHHHHHHhcChhhhHH
Q 027102 82 ASEANQLHEAIKAKQL-DHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPERHFA 160 (228)
Q Consensus 82 ~~da~~L~~a~~g~~~-d~~~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~lv~~~~~~~~~~A 160 (228)
++||+.|++|++++++ |+..++.||++||..|++.++++|+..+|+++++.|+++++|+|+.+|++++.|++|||.|||
T Consensus 174 ~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA 253 (321)
T KOG0819|consen 174 KQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFA 253 (321)
T ss_pred HHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHH
Confidence 9999999999998765 777999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhhhhcccHHHHHHHHHhhccC
Q 027102 161 EVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGSK 227 (228)
Q Consensus 161 ~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~sG~~~~~Ll~l~~~~ 227 (228)
+.||.||+|.|||+++||||+|+|||.||..|+.+|+++||+||.++|+.+|||||+++|++||+++
T Consensus 254 ~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 254 ERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred HHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-50 Score=334.38 Aligned_cols=210 Identities=24% Similarity=0.358 Sum_probs=202.1
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHHhhhccCCchhhCHHHH
Q 027102 2 AKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAA 81 (228)
Q Consensus 2 l~~A~kg~~~~gtde~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~ll~~~r~e~~~i~~~~~ 81 (228)
|++||+| +||||+.||+||+.|||.|++.|+++|+..||++|.+++++|+||+|++++++|+..| +
T Consensus 25 L~kA~kG---~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p-----------~ 90 (321)
T KOG0819|consen 25 LRKAMKG---FGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPP-----------A 90 (321)
T ss_pred HHHHHhc---CCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCH-----------H
Confidence 7999999 9999999999999999999999999999999999999999999999999999999865 7
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhCCChHHhhhhcccCcHHHHHHHHHHHhcC-------
Q 027102 82 ASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRC------- 154 (228)
Q Consensus 82 ~~da~~L~~a~~g~~~d~~~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~lv~~~~~------- 154 (228)
+.||+.|++|++|.|+++..+|+|+|+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.+++..++
T Consensus 91 ~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~ 170 (321)
T KOG0819|consen 91 EYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDD 170 (321)
T ss_pred HhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred -hhhhHHHHHHhhhcc-CCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhhhhcccHHHHHHHHHhhc
Q 027102 155 -PERHFAEVIRTSIVG-FGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTG 225 (228)
Q Consensus 155 -~~~~~A~~L~~A~~g-~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~sG~~~~~Ll~l~~ 225 (228)
.+..+|..|++|... +|||+..+++||++||..||+.+.++|++.+|+++++.|+.+++|+|+++|++++.
T Consensus 171 ~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~ 243 (321)
T KOG0819|consen 171 ALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVK 243 (321)
T ss_pred HHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHH
Confidence 357899999999976 58999999999999999999999999999999999999999999999999999874
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.79 E-value=4.2e-19 Score=117.89 Aligned_cols=66 Identities=36% Similarity=0.637 Sum_probs=63.6
Q ss_pred hHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhhhhcccHHHHHHHHHh
Q 027102 158 HFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 223 (228)
Q Consensus 158 ~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~sG~~~~~Ll~l 223 (228)
+||+.|++|++|+|+|+..+++|+++||+.|++.|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.72 E-value=1.7e-17 Score=110.10 Aligned_cols=62 Identities=37% Similarity=0.500 Sum_probs=58.8
Q ss_pred CHHHHhcCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHH
Q 027102 1 MAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRL 65 (228)
Q Consensus 1 ~l~~A~kg~~~~gtde~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~l 65 (228)
++++|++| +|||+..+++|+|+||+.|+++|+++|+..||++|+++|++++||+|+++|++|
T Consensus 5 ~l~~a~~~---~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 5 LLHAALKG---WGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHSS---SSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred HHHHHccC---CCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 37899998 999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.60 E-value=2.3e-15 Score=95.41 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHH
Q 027102 13 VKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRL 65 (228)
Q Consensus 13 gtde~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~l 65 (228)
||||+.|++|+|+||+.|+++|+++|+..||++|.++|.+++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 59999999999999999999999999999999999999999999999999864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.57 E-value=8e-15 Score=92.91 Aligned_cols=53 Identities=40% Similarity=0.702 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhhhhcccHHHHHHHHHh
Q 027102 171 GTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 223 (228)
Q Consensus 171 gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~sG~~~~~Ll~l 223 (228)
|||++.|++|+++|++.|+..|+.+|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999875
No 7
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=60.69 E-value=28 Score=25.31 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhCCChHHhhhhcc--------cCcHHHHHHHH
Q 027102 101 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVG--------KGDLVSLMKMV 148 (228)
Q Consensus 101 ~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~--------~g~~~~~l~~l 148 (228)
...+.|.++||.-+.-..+.++...+.+|.+.+.-|+ .++|.+++.++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~ 90 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRAL 90 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5668889999999999999999988999999887653 46666665554
No 8
>PF14003 YlbE: YlbE-like protein
Probab=56.37 E-value=16 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHhcCHHHHHHHHHHHhhhhCCChHHhhhhcc
Q 027102 181 IITRAEVDMKLIKEVYPIMYKNTLEDDVIGDT 212 (228)
Q Consensus 181 l~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~ 212 (228)
..+|.|.++.....++...|++++-+.|..-.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 35699999999999999999999999998543
No 9
>PF14003 YlbE: YlbE-like protein
Probab=56.27 E-value=38 Score=22.00 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCc-hHHHHHHHHh
Q 027102 19 IVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSM-PLRKVLLRLV 66 (228)
Q Consensus 19 li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg-~~~~ll~~ll 66 (228)
......+|.|.++.....++...|++.+-+.|..-..+ .+..+++.++
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 34556799999999999999999999998888865444 3444544443
No 10
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=44.54 E-value=45 Score=29.50 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh---CCChHHhhhhcccCcH
Q 027102 82 ASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMH---GSPIDEDISSVGKGDL 141 (228)
Q Consensus 82 ~~da~~L~~a~~g~~~d~~~li~il~~rs~~~l~~i~~~Y~~~~---g~~L~~~i~~~~~g~~ 141 (228)
..+...+|+|+.-+|+|...|..++-+|+.-|+ +..|.+-- -.-+.++|+....-++
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqI---KaKfi~Eek~nP~rIn~aL~~kkp~d~ 429 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERKQI---KAKFIKEEKVNPERINEALNEKKPFDQ 429 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHHHH---HHHHHHHhhhCHHHHHHHHhccCCCCH
Confidence 357889999999999999999999999976555 44554432 2334455554444443
No 11
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=42.15 E-value=22 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHhhhccc
Q 027102 25 ASSPYHLAAVRQAYCALFDCS 45 (228)
Q Consensus 25 ~rs~~~~~~i~~~Y~~~~~~~ 45 (228)
+-|++++..|+++|+.+|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 348899999999999999754
No 12
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=41.83 E-value=69 Score=21.40 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhhCCC-hHHhhhhcccHHHHHHHH
Q 027102 186 EVDMKLIKEVYPIMYKNT-LEDDVIGDTSGDYQDFLL 221 (228)
Q Consensus 186 ~~~l~~i~~~Y~~~yg~s-L~~~I~~~~sG~~~~~Ll 221 (228)
+.||.+-..+|+++|+++ ..+.|..+..-+++.++.
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFr 53 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFR 53 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHH
Confidence 567888888999999999 566777778888777664
No 13
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=40.22 E-value=2.3e+02 Score=24.04 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=28.2
Q ss_pred hHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhh-hCCChHH
Q 027102 158 HFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIM-YKNTLED 206 (228)
Q Consensus 158 ~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~-yg~sL~~ 206 (228)
++...+..+.+-.|.+...+.+++. ...|+.+|...|+-+ ||.+-++
T Consensus 173 yy~~~~~~~~~~~~~~~~~l~~~~~--~~iD~~Ni~~~~R~k~~~~~~~~ 220 (337)
T PF01992_consen 173 YYEDLLKAAKKLSGSEREILRELLG--MEIDLTNIKTILRAKKYGLSPEE 220 (337)
T ss_dssp HHHHHHHHHH---TSS-HHHHHHHH--HHHHHHHHHHHHHTTTS---GGG
T ss_pred HHHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCHhh
Confidence 4556666666333466666667776 489999999999954 6766553
No 14
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=2.8e+02 Score=25.36 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=33.2
Q ss_pred hcccCcHHHHHHHHHHHhcChhhhHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhh
Q 027102 135 SVGKGDLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIM 199 (228)
Q Consensus 135 ~~~~g~~~~~l~~lv~~~~~~~~~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~ 199 (228)
...+|+-+.++.-+.. ..+.--..|+.-......|+.+|-+||- .+..+..+-..|+.-
T Consensus 239 g~a~pd~E~~lq~v~~----~ce~lr~tlfrlaset~dnD~aL~eILq--anD~ltrvi~~ykt~ 297 (594)
T KOG1086|consen 239 GNASPDNELLLQEVYN----RCEQLRPTLFRLASETEDNDPALAEILQ--ANDNLTRVINLYKTP 297 (594)
T ss_pred CCCCCcHHHHHHHHHH----HHHHHHHHHHHhhcccccCcHHHHHHHh--hhhhHHhhhhhcccc
Confidence 3456666655544432 2222222333333334457888888886 467788888888753
No 15
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=35.70 E-value=1.7e+02 Score=22.43 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=33.4
Q ss_pred CchHHHHHHHHhhhccCCc---hhhCHHHHHHHHHHHHHhhhcCCCC---HHHHHHHhhcCCHHHHHHHHHHH
Q 027102 55 SMPLRKVLLRLVSSFRYDK---ELLDIEAAASEANQLHEAIKAKQLD---HDQVVHILATRNFFQLKATFERY 121 (228)
Q Consensus 55 sg~~~~ll~~ll~~~r~e~---~~i~~~~~~~da~~L~~a~~g~~~d---~~~li~il~~rs~~~l~~i~~~Y 121 (228)
.|++...+..++....... ..+....+..--..|-.+ .|.+.. ...+..++...||.+..-|.+--
T Consensus 87 ~GD~g~~~~~~~~~~~~~~~~~~~lTi~~V~~~L~~la~~-~g~~s~~~k~~~l~~ll~~~s~~E~k~i~Rii 158 (177)
T PF04675_consen 87 VGDLGEVAEEVLQKRKSETSKPSPLTISEVNETLDELAAA-SGKGSQDEKIDILKELLRRCSPEEAKWIVRII 158 (177)
T ss_dssp HS-HHHHHHHHHHHHTTTS--SS--BHHHHHHHHHHHHH---STTHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7888877777776544321 233333332322333322 122211 12777888888999998887553
No 16
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.66 E-value=1.5e+02 Score=23.94 Aligned_cols=64 Identities=6% Similarity=0.145 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHHhhhccCCchhhC-HHHHHHHHHHHHHh
Q 027102 27 SPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLD-IEAAASEANQLHEA 91 (228)
Q Consensus 27 s~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~ll~~~r~e~~~i~-~~~~~~da~~L~~a 91 (228)
.=.-+.+|++.|...||.....++.-.....|.+.|..-+...-+.|. +| ...+...+..++.-
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~v 140 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGV 140 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHH
Confidence 345688999999999999988888777777887777776666544443 32 34444555555443
No 17
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=34.53 E-value=2.2e+02 Score=22.07 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-------hhcccHHHHHHhccCchHHHHHHHHhhhccCCchhhCHHHHHHHHHHHH
Q 027102 17 QVIVEISCASSPYHLAAVRQAYCA-------LFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLH 89 (228)
Q Consensus 17 ~~li~il~~rs~~~~~~i~~~Y~~-------~~~~~L~~di~~~~sg~~~~ll~~ll~~~r~e~~~i~~~~~~~da~~L~ 89 (228)
..|-+.+...|..+++.++..... .|...+...+.....+-+..+..+--.+.-.+...+|..........+.
T Consensus 8 ~~Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~ 87 (163)
T PF09888_consen 8 EILKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIE 87 (163)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHH
Confidence 345566778899999999988876 6777777777777777776665433333333333466666666666665
Q ss_pred Hhhh
Q 027102 90 EAIK 93 (228)
Q Consensus 90 ~a~~ 93 (228)
+...
T Consensus 88 ~~~~ 91 (163)
T PF09888_consen 88 DGCS 91 (163)
T ss_pred Hhhc
Confidence 4433
No 18
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=34.07 E-value=1.1e+02 Score=22.86 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcccH------HHHHHhcc-Cc--hHHHHHHHHhhhccCCchhhCHHHHHHHHHHHHHhhhcCCC
Q 027102 33 AVRQAYCALFDCSI------EEDITAVV-SM--PLRKVLLRLVSSFRYDKELLDIEAAASEANQLHEAIKAKQL 97 (228)
Q Consensus 33 ~i~~~Y~~~~~~~L------~~di~~~~-sg--~~~~ll~~ll~~~r~e~~~i~~~~~~~da~~L~~a~~g~~~ 97 (228)
.|+.+|++.||... ...+.+.+ +| ..+..+-+++++..+-....++..+-.-++..++.+-|..+
T Consensus 13 vI~AaYrQVf~~~~~~~~er~~~lESqlrng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khlLGR~p 86 (131)
T PF00427_consen 13 VIRAAYRQVFGNDHPMESERLISLESQLRNGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHLLGRAP 86 (131)
T ss_dssp HHHHHHHHHHSSSSSHCSHHTHHHHHHHHTTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHHCSS--
T ss_pred HHHHHHHHHhcCccchhhhccchHHHHHHcCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHHhCCCC
Confidence 47899999997551 11222222 23 24555555555433222122222334455555555555543
No 19
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=33.50 E-value=1.3e+02 Score=27.11 Aligned_cols=79 Identities=10% Similarity=-0.094 Sum_probs=41.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHhhcCCHHHHHHHHH-HHHHhhCCChHHhhhhcccCcHHHHHHHHHHHhcChhhhHHHH
Q 027102 84 EANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFE-RYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPERHFAEV 162 (228)
Q Consensus 84 da~~L~~a~~g~~~d~~~li~il~~rs~~~l~~i~~-~Y~~~~g~~L~~~i~~~~~g~~~~~l~~lv~~~~~~~~~~A~~ 162 (228)
|-..|+.++++.-..+...+... .-++.++....+ .|+.. ++-+...-.=+++--.+.+|++..-+..||+.+||..
T Consensus 247 d~~~L~r~ik~~L~~~~~~~~~~-e~~~s~~e~~~~~~~~~~-~r~~~~~~~i~ls~ysKyLLIAAylASyNpar~Darf 324 (438)
T KOG2543|consen 247 DKARLWRHIKPFLGSDLNEIYRR-EIESSEDENRLAMEDKSL-NRKLVALSEIELSYYSKYLLIAAYLASYNPARLDARF 324 (438)
T ss_pred HHHHHHHHhhHhhhhhhHHHHHh-cCchhhhhhhhhhhhhhh-hhhhhccccccchHHHHHHHHHHHHhccCchhccchh
Confidence 46788999888754443322222 223333332211 12211 1111111112344445678888888889999999988
Q ss_pred HH
Q 027102 163 IR 164 (228)
Q Consensus 163 L~ 164 (228)
..
T Consensus 325 Fs 326 (438)
T KOG2543|consen 325 FS 326 (438)
T ss_pred hh
Confidence 83
No 20
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=31.80 E-value=1.1e+02 Score=17.89 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcCCCC-HHHHHHHhh-cCCHHHHHH
Q 027102 83 SEANQLHEAIKAKQLD-HDQVVHILA-TRNFFQLKA 116 (228)
Q Consensus 83 ~da~~L~~a~~g~~~d-~~~li~il~-~rs~~~l~~ 116 (228)
++-..|.+++...|.+ -..|...+. +||+.|...
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 3556778888888777 568888888 999888754
No 21
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.95 E-value=1.6e+02 Score=20.41 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=46.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchHHHHHHHHhhhccCCchhhCHHHHHHHHHHHHHhhhcCC-CC
Q 027102 20 VEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLHEAIKAKQ-LD 98 (228)
Q Consensus 20 i~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll~~ll~~~r~e~~~i~~~~~~~da~~L~~a~~g~~-~d 98 (228)
..--...|++|..+|++.+...+... ..++.+.... +.-+..++..+. +|+..++.-.+.+.++-.... .-
T Consensus 36 ~~~~l~Lt~eQ~~~l~~~~~~~~~~~--~~~r~~~~~~-r~~l~~ll~~~~-----~D~~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 36 LADMLNLTPEQQAKLRALMDEFRQEM--RALRQELRAA-RQELRALLAAPP-----PDEAAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp HHHHS-TTHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHCCSS-----S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHcCCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445789999999999998877522 2233333222 333445555443 344444444445444433221 12
Q ss_pred HHHHHHHhhcCCHHHHH
Q 027102 99 HDQVVHILATRNFFQLK 115 (228)
Q Consensus 99 ~~~li~il~~rs~~~l~ 115 (228)
...++++...-||+|+.
T Consensus 108 ~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 108 LEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHcCCHHHhC
Confidence 23666777777777764
No 22
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=30.90 E-value=2.1e+02 Score=21.07 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHhcChhhhHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhhh
Q 027102 144 LMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVI 209 (228)
Q Consensus 144 ~l~~lv~~~~~~~~~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~ 209 (228)
-+..++.|+.....-.++.+.+|+.. .+-..+++++ ......|.+.||+.=.-.|.
T Consensus 48 ~f~~i~~~~~~~~~~~~ea~~~Ai~~---~dla~vk~~v-------n~~~~s~~~~fG~~p~r~vt 103 (123)
T PF05396_consen 48 GFAAIMSHAEANSPAAAEAFNEAIES---GDLATVKAAV-------NLAGASYRKKFGKAPERSVT 103 (123)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---CCHHHHHHHH-------HHHHHHHHHHhCCCcccccc
Confidence 34556777765566677888888874 4455556665 45667888999987665443
No 23
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=30.73 E-value=58 Score=27.93 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=38.9
Q ss_pred CchHHHHHHHHhcCHHHHHHHHHHHhhhhCCC----------hHHhhhhcccHHHHHHHHHhhccCC
Q 027102 172 TDEAALNRAIITRAEVDMKLIKEVYPIMYKNT----------LEDDVIGDTSGDYQDFLLTLTGSKF 228 (228)
Q Consensus 172 td~~~li~il~~rs~~~l~~i~~~Y~~~yg~s----------L~~~I~~~~sG~~~~~Ll~l~~~~~ 228 (228)
||-+.+-++=++..+.|+.+|.++|+..|++. ..+.+..++.-.|-++|..-|.++|
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEF 76 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEF 76 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhh
Confidence 56667777767767889999999999887653 2233444555667777777666554
No 24
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=28.50 E-value=2.8e+02 Score=21.51 Aligned_cols=21 Identities=5% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 027102 21 EISCASSPYHLAAVRQAYCAL 41 (228)
Q Consensus 21 ~il~~rs~~~~~~i~~~Y~~~ 41 (228)
.+...-+..|+++.|++|.-+
T Consensus 21 nvFamf~q~QIqEfKEAF~~m 41 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLM 41 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHH
Confidence 456667889999999999853
No 25
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=27.23 E-value=3e+02 Score=21.34 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHhcChhhhHHHHHHhhhccCCCchHHHHHH
Q 027102 144 LMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRA 180 (228)
Q Consensus 144 ~l~~lv~~~~~~~~~~A~~L~~A~~g~gtd~~~li~i 180 (228)
+++++++.-.+-.+|.+..+++|+.|.|.-++.-+..
T Consensus 85 ~~la~~~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~ 121 (160)
T COG0817 85 ALLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQVQH 121 (160)
T ss_pred HHHHHHHcCCChhhccHHHHHHHhhcCCcccHHHHHH
Confidence 4455555555677889999999999988665554333
No 26
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=1.7e+02 Score=23.53 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChHHhhhhcccCcHHHHHHHHHHHh-cChh
Q 027102 109 RNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCI-RCPE 156 (228)
Q Consensus 109 rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~lv~~~-~~~~ 156 (228)
++..-++.|.+.|.+.||.....++...+...|-..|..-+... .+|.
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 35667899999999999998888777666666666665555544 4444
No 27
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=26.45 E-value=67 Score=27.73 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=39.1
Q ss_pred CchHHHHHHHHhcCHHHHHHHHHHHhhhhCCC-------hH---HhhhhcccHHHHHHHHHhhccCC
Q 027102 172 TDEAALNRAIITRAEVDMKLIKEVYPIMYKNT-------LE---DDVIGDTSGDYQDFLLTLTGSKF 228 (228)
Q Consensus 172 td~~~li~il~~rs~~~l~~i~~~Y~~~yg~s-------L~---~~I~~~~sG~~~~~Ll~l~~~~~ 228 (228)
||-+.+-++=++..+.|+.+|.++|+..|++. .. +.|..++.-.|-++|..-|.++|
T Consensus 20 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEF 86 (337)
T TIGR02029 20 TDFEEMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEF 86 (337)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 67777777777777889999999999888653 11 22444444457777777666554
No 28
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=25.49 E-value=58 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhhhccc
Q 027102 27 SPYHLAAVRQAYCALFDCS 45 (228)
Q Consensus 27 s~~~~~~i~~~Y~~~~~~~ 45 (228)
+.+.+.+|+++|++.|+.+
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4678899999999999754
No 29
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=24.98 E-value=67 Score=18.24 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhCCCh
Q 027102 189 MKLIKEVYPIMYKNTL 204 (228)
Q Consensus 189 l~~i~~~Y~~~yg~sL 204 (228)
++.++.+-+++||++|
T Consensus 10 i~kvr~eckrrfgktl 25 (40)
T PF13043_consen 10 IQKVRAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHHHHHhchhh
Confidence 5678888999999987
No 30
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=24.85 E-value=2.3e+02 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.3
Q ss_pred HHHHhhhccCCCchHHHHHHHHh
Q 027102 161 EVIRTSIVGFGTDEAALNRAIIT 183 (228)
Q Consensus 161 ~~L~~A~~g~gtd~~~li~il~~ 183 (228)
..|++-++|..++.++|++|+-+
T Consensus 44 StLYKil~G~dpr~~tl~~I~kt 66 (170)
T COG4800 44 STLYKILKGSDPRYDTLTRIFKT 66 (170)
T ss_pred HHHHHHHhCCCccHHHHHHHHHH
Confidence 46889999999999999999975
No 31
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=24.78 E-value=1.4e+02 Score=16.65 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHHHhhhcCC-CCHHHHHHHhhcCCHHHHHHH
Q 027102 84 EANQLHEAIKAKQ-LDHDQVVHILATRNFFQLKAT 117 (228)
Q Consensus 84 da~~L~~a~~g~~-~d~~~li~il~~rs~~~l~~i 117 (228)
+...|..++...| .+-..|...+.+||+.++..-
T Consensus 8 E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 8 EDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 4446666666666 566688888888998877543
No 32
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.94 E-value=78 Score=27.50 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=38.9
Q ss_pred CchHHHHHHHHhcCHHHHHHHHHHHhhhhCCC-------hHH---hhhhcccHHHHHHHHHhhccCC
Q 027102 172 TDEAALNRAIITRAEVDMKLIKEVYPIMYKNT-------LED---DVIGDTSGDYQDFLLTLTGSKF 228 (228)
Q Consensus 172 td~~~li~il~~rs~~~l~~i~~~Y~~~yg~s-------L~~---~I~~~~sG~~~~~Ll~l~~~~~ 228 (228)
||-+.+-++=++..+.|+.+|.++|+..|++. ..+ .|..++.-.|-++|..-|.++|
T Consensus 26 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEF 92 (351)
T CHL00185 26 TDFDEMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEF 92 (351)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 67788888878878899999999999888653 222 2333344446677766666554
No 33
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=23.82 E-value=76 Score=28.02 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHhcChhhhHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHH
Q 027102 140 DLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLED 206 (228)
Q Consensus 140 ~~~~~l~~lv~~~~~~~~~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~ 206 (228)
+-+.||..||+|--|. .+|++.+.-+-.++..-++..++.+.++.-..++ .|||++..
T Consensus 244 DnEqAL~~LvkcnfDt--------eeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~-~yGKDF~l 301 (445)
T KOG4329|consen 244 DNEQALYELVKCNFDT--------EEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLE-LYGKDFHL 301 (445)
T ss_pred ccHHHHHHHHHcCCcH--------HHHHHhcCCcceecccccccCCHHHHHHHHHHHH-HhcccHHH
Confidence 4466777777664332 3566666667777777788888888888877776 88888763
No 34
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=23.43 E-value=4.3e+02 Score=22.00 Aligned_cols=63 Identities=6% Similarity=0.027 Sum_probs=36.5
Q ss_pred cCcHHHHHHHHHHHhcChhhhHHHHHHhhhccC----CC---chHHHHHHHHhcCHHHHHHHHHHHhhhh
Q 027102 138 KGDLVSLMKMVILCIRCPERHFAEVIRTSIVGF----GT---DEAALNRAIITRAEVDMKLIKEVYPIMY 200 (228)
Q Consensus 138 ~g~~~~~l~~lv~~~~~~~~~~A~~L~~A~~g~----gt---d~~~li~il~~rs~~~l~~i~~~Y~~~y 200 (228)
+-.-+-+|+|..-+..||+..|.....+.-... ++ ....+-.-+.+-..-.|+.+..-|...+
T Consensus 135 p~~sK~LLIAAYLAS~Np~~~D~r~F~k~~~r~~kr~~~~~~~~~~~~~~llgP~~F~LeRLLAIf~aI~ 204 (271)
T PF14630_consen 135 PYYSKYLLIAAYLASYNPPRTDKRLFSKKKGRKRKRKRGRRRKKEKISQRLLGPKPFPLERLLAIFYAIL 204 (271)
T ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHHhccccccccccchhhhhhhhhhhccCCCcccHHHHHHHHHHHH
Confidence 333456778888888999999998876544321 11 1112333333444556666666666555
No 35
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=22.64 E-value=92 Score=19.17 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhCCChHHh
Q 027102 186 EVDMKLIKEVYPIMYKNTLEDD 207 (228)
Q Consensus 186 ~~~l~~i~~~Y~~~yg~sL~~~ 207 (228)
...+..++++|+++.|-++.+.
T Consensus 13 aekl~llkqayqkktgatises 34 (62)
T PF13062_consen 13 AEKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHHhhcCCccchh
Confidence 3457789999999999887654
No 36
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=22.03 E-value=1.5e+02 Score=16.16 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHhhhcCC-CCHHHHHHHhhcCCHHHHHH
Q 027102 84 EANQLHEAIKAKQ-LDHDQVVHILATRNFFQLKA 116 (228)
Q Consensus 84 da~~L~~a~~g~~-~d~~~li~il~~rs~~~l~~ 116 (228)
+-..|..+....| .+-..|...+.+||+.++..
T Consensus 6 E~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 6 EDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 3445555655555 55668888888888887653
No 37
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=21.71 E-value=1.5e+02 Score=19.02 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=17.6
Q ss_pred CHHHHhcCCCCCCCCHHHHHHHHhcCCHHHH
Q 027102 1 MAKEALKKSKSGVKHLQVIVEISCASSPYHL 31 (228)
Q Consensus 1 ~l~~A~kg~~~~gtde~~li~il~~rs~~~~ 31 (228)
+|..|..| |+.++.+||....|-=.
T Consensus 3 vI~~A~~G------D~~A~~~IL~~y~~yI~ 27 (65)
T PF12645_consen 3 VIKAAKQG------DPEAMEEILKHYEPYIS 27 (65)
T ss_pred HHHHHHcC------CHHHHHHHHHHHHHHHH
Confidence 35667775 89999999977655433
No 38
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=21.65 E-value=4.8e+02 Score=24.72 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcccHHHHHHhccCchH-HHHHHHHhhhccCCchhhCHHHHHHHHHHHHHhhhc
Q 027102 16 LQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPL-RKVLLRLVSSFRYDKELLDIEAAASEANQLHEAIKA 94 (228)
Q Consensus 16 e~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~-~~ll~~ll~~~r~e~~~i~~~~~~~da~~L~~a~~g 94 (228)
-..+-+.+..+.|+.+. |.+.|..-|.+-|..-+..+++-.. .-.+++++...+... +..++++-...++++|
T Consensus 293 L~~i~e~i~~~~pp~~N-I~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~-----~t~e~~f~f~~dev~~ 366 (742)
T COG5173 293 LSFIRENISLSFPPFDN-ILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYY-----NTIESKFNFIADEVGG 366 (742)
T ss_pred HHHHHHHccccCCchHH-HHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-----HHHHHhCCccHHHhcc
Confidence 34566777778888775 7789999999888888777765432 345666666554321 3356666677777766
Q ss_pred CCCC
Q 027102 95 KQLD 98 (228)
Q Consensus 95 ~~~d 98 (228)
.-.|
T Consensus 367 ~l~d 370 (742)
T COG5173 367 RLLD 370 (742)
T ss_pred cccC
Confidence 5444
No 39
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=20.96 E-value=34 Score=29.44 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHHhcCHHHHHHHHHHHhhhhCCChHHhhhhcccHH--HHHHHHHhh
Q 027102 179 RAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGD--YQDFLLTLT 224 (228)
Q Consensus 179 ~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I~~~~sG~--~~~~Ll~l~ 224 (228)
=+|++|++.-|.+++++-.++|+....-.+.+-++|+ |++++-.|-
T Consensus 76 vvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 76 VVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhc
Confidence 3678999999999999999999966655555556777 777765543
No 40
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=20.69 E-value=2.1e+02 Score=17.45 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=20.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 027102 84 EANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQ 123 (228)
Q Consensus 84 da~~L~~a~~g~~~d~~~li~il~~rs~~~l~~i~~~Y~~ 123 (228)
+-..|.......|.+-..|.+.|..||+.++ ...|..
T Consensus 5 Ed~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~---~~r~~~ 41 (60)
T PF13921_consen 5 EDELLLELVKKYGNDWKKIAEHLGNRTPKQC---RNRWRN 41 (60)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHSTTS-HHHH---HHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHCcCCHHHH---HHHHHH
Confidence 3445555555444455577777766887554 556665
No 41
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.58 E-value=1e+02 Score=26.85 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=39.5
Q ss_pred CchHHHHHHHHhcCHHHHHHHHHHHhhhhCCC-------hHH---hhhhcccHHHHHHHHHhhccCC
Q 027102 172 TDEAALNRAIITRAEVDMKLIKEVYPIMYKNT-------LED---DVIGDTSGDYQDFLLTLTGSKF 228 (228)
Q Consensus 172 td~~~li~il~~rs~~~l~~i~~~Y~~~yg~s-------L~~---~I~~~~sG~~~~~Ll~l~~~~~ 228 (228)
||-+.+-++=++..+.|+.+|.++|+..|++. ..+ .|..++.-.|-++|..-|.++|
T Consensus 30 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEF 96 (355)
T PRK13654 30 TDFDAMAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEF 96 (355)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 67888888878777899999999999888653 222 2333344447777777666654
No 42
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=20.39 E-value=2e+02 Score=19.04 Aligned_cols=45 Identities=27% Similarity=0.196 Sum_probs=31.9
Q ss_pred hhhHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhh
Q 027102 156 ERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMY 200 (228)
Q Consensus 156 ~~~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~y 200 (228)
-..|.+.+.+-+.....+-+.|.+++.++++.|...++..=++..
T Consensus 23 ~~SFSdvI~~l~~kKr~~levl~~~~g~~s~eEvek~~~e~~~ae 67 (74)
T COG1753 23 KESFSDVIRELIEKKRGNLEVLMRAFGTLSEEEVEKIKKEEKEAE 67 (74)
T ss_pred cccHHHHHHHHHHHhhhhHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 344555666666655678888999999999999888876655433
No 43
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=20.29 E-value=1.9e+02 Score=19.79 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHhcChhhhHHHHHHhhhccCCCchHHHHHHHHhcCHHHHHHHHHHHhhhhCCChHHhh
Q 027102 150 LCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDV 208 (228)
Q Consensus 150 ~~~~~~~~~~A~~L~~A~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~sL~~~I 208 (228)
.+..-.|.+....|.+|++. .|...+.+ ..|++.++...+......+...+
T Consensus 7 ~~~~~sPy~al~~i~~Ai~~--~D~~~l~~------~VD~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 7 GYYAASPYYALYQIRQAIQA--HDAAALAR------YVDFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HHHHHCHHHHHHHHHHHHHH--cCHHHHHH------HcCHHHHHHHHHHHHHHHHHhhc
Confidence 34445677788999999987 46655544 35677788877777766776655
Done!