BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027103
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 13 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPVSILSP 215
SHVP IL+P
Sbjct: 192 SHVP--ILAP 199
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 36 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 95
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 96 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 155
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 156 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 206 SHVPVSILSP 215
SHVP IL+P
Sbjct: 215 SHVP--ILAP 222
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 13 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPVSILSP 215
SHVP IL+P
Sbjct: 192 SHVP--ILAP 199
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 273 bits (697), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 136/190 (71%), Positives = 151/190 (79%), Gaps = 3/190 (1%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 36 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 95
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ YM+ QCLGA+C
Sbjct: 96 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAIC 155
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 156 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 206 SHVPVSILSP 215
SHVP IL+P
Sbjct: 215 SHVP--ILAP 222
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/190 (71%), Positives = 151/190 (79%), Gaps = 3/190 (1%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 32 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 91
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ YM+ QCLGA+C
Sbjct: 92 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAIC 151
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 152 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 210
Query: 206 SHVPVSILSP 215
SHVP IL+P
Sbjct: 211 SHVP--ILAP 218
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVS--KSNTKCSTVGIQGIAWAFGGMIFAL 101
E K F+RA +AEF+AT LF++I++ + +G N + + ++ AFG I L
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATL 63
Query: 102 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYER 161
ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+ ++ G S
Sbjct: 64 AQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNS 123
Query: 162 LGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
L G N +A G G GLG EIIGT LV V + TD +R P++I
Sbjct: 124 L--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAI 172
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVS---KSNTKCSTVGIQ-GIAWAFGGMIF 99
E K F+RA +AEF+A LF++I++ + +G KSN V ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
L ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+ ++ G S
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 160 ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
L G N +A G G GLG EIIGT LV V + TD +R P++I
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAI 174
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS---VVGGLGVT 126
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
HG T G GL E+I TF LV+T+F++ D+KR V ++I
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAI 171
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS---VVGGLGVT 126
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
HG T G GL E+I TF LV+T+F++ D KR V ++I
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 171
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---SVVGGLGVT 165
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
HG T G GL E+I TF LV+T+F++ D KR V ++I
Sbjct: 166 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 210
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 5/165 (3%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ +++ + + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTE-KPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVT 117
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
+ HG T G GL E+I TF LV+T+F++ D+KR + ++I
Sbjct: 118 MVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAI 162
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
EL+S SF+RA AEF A+ +++ +G S +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
ISG H+NPAVTF L+ ++SL RA+ YMV Q LGAV GA V+ + + R
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
N + G + G EI T V +F+ D +RN R V +++
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 164
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
EL+S SF+RA AEF AT +++ +G S +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
ISG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
N + G + G EI T V +F+ D +RN R V +++
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 164
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
E+ S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
+SGGHINPA+T LL+ ++SL RA FY+ Q +GA+ GAG++ G + R
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGN 117
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203
N + + T+G + E+I TF L +F++TD++R +
Sbjct: 118 LAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCT 105
+S SF+RA AEF AT +++ +G S +Q +A AFG + LV
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAV 55
Query: 106 AGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGG 165
ISG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R
Sbjct: 56 GHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLA 113
Query: 166 ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
N + G + G EI T V +F+ D +RN R V +++
Sbjct: 114 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 160
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
SF+RA AEF AT +++ +G S +Q +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHI 56
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNT 114
Query: 169 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSI 212
+ G + G EI T V +F+ D +RN R V +++
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 158
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 55 IAEFMATFLFLY-------ITVLTVMGVSKSN-------TKCSTVGIQGIAWAFGGMIFA 100
IAEF+ TF+ ++ +T++ G + N I AFG I A
Sbjct: 9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAA 68
Query: 101 LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYE 160
+Y ISG HINPAVT GL +K V Y++ Q LGA G+ + G
Sbjct: 69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAAT 128
Query: 161 RLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 204
G GA G + + AE++GTF+L+ T+ +R +
Sbjct: 129 VGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPK 172
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG- 107
S+++A +AE + TFL + +T+MG++ +G A G+ A + T G
Sbjct: 142 SYWQAMLAEVVGTFLLM----ITIMGIAVDERAP-----KGFAGIIIGLTVAGIITTLGN 192
Query: 108 ISGGHINPAVTFG 120
ISG +NPA TFG
Sbjct: 193 ISGSSLNPARTFG 205
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 55 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGIS 109
IAEF+ T L ++ + L V G S + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 110 GGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGF 153
G H+NPAVT L L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 55 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGIS 109
IAEF+ T L ++ + L V G S + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMA--------IYLTAGVS 63
Query: 110 GGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGF 153
G H+NPAVT L L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSILSPC 216
D + A P++I C
Sbjct: 157 D--KFAPAGFAPIAIGLAC 173
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSI---LSPCHSLS 220
D + A P++I L+ H +S
Sbjct: 157 D--KFAPAGFAPIAIGLALTLIHLIS 180
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSI---LSPCHSLS 220
D + A P++I L+ H +S
Sbjct: 157 D--KFAPAGFAPIAIGLALTLIHLIS 180
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 94 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 153
Query: 198 DAKRNARDSHVPVSI---LSPCHSLS 220
D + A P++I L+ H +S
Sbjct: 154 D--KFAPAGFAPIAIGLALTLIHLIS 177
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSI 212
D + A P++I
Sbjct: 157 D--KFAPAGFAPIAI 169
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 64/160 (40%), Gaps = 14/160 (8%)
Query: 56 AEFMATFLFLY-------ITVLTVMGVSKSN--TKCSTVGIQGIAWAFGGMIFAL----- 101
AE + TF+ ++ IT++ G K N W GM FAL
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 102 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYER 161
+Y ISG HINPAVT L + V Y+V Q +GA G+ + G
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATV 130
Query: 162 LGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 201
G GA G G + E IGTF+L+ + +R
Sbjct: 131 GGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDER 170
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 52 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGG 111
+A + E + TFL + L +MGV+ I GG+I + I+G
Sbjct: 146 QAILTEAIGTFLLM----LVIMGVAVDERAPPGFAGLVIGLTVGGIITTI----GNITGS 197
Query: 112 HINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGA 147
+NPA TFG L L Y + +G + GA
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGA 233
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A A+G + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSI---LSPCHSLS 220
D + A P++I L+ H +S
Sbjct: 157 D--KFAPAGFAPIAIGLALTLIHLIS 180
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A A+G + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPVSI 212
D + A P++I
Sbjct: 157 D--KFAPAGFAPIAI 169
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMV 137
+G G+A AFG + + Y GISGGH NPAV+ GL +A + + V Y++
Sbjct: 62 IGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVI 114
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 57 EFMATFLFLY----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGH 112
EF+ TFLFL+ I + + + + I++ FG + V+ T +SGG+
Sbjct: 51 EFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGN 110
Query: 113 INPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG 172
+NPAVT L+LAR + R + Q + + AG + AN + G
Sbjct: 111 LNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI-----AFANALGGG 165
Query: 173 YTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203
++ GL E GT +L TV K A
Sbjct: 166 ASRTRGLFLEAFGTAILCLTVLMLAVEKHRA 196
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG----IAWAFGGMIFALVYC 104
S+ R I EF+ TF+ +++ + T G+ G + +G +F +
Sbjct: 8 SYVREFIGEFLGTFVLMFLG-------EGATANFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 105 TAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG 152
+A +SG H+N AV+ GL K L + Y Q LGA G V G
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYG 108
>pdb|1QAX|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAX|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAY|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1QAY|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1R31|A Chain A, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R31|B Chain B, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R7I|A Chain A, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1R7I|B Chain B, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1T02|A Chain A, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
pdb|1T02|B Chain B, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
Length = 428
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 177 DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPVSILSPC 216
+G+ +IGTF L Y V A++ + N RD VP+ + P
Sbjct: 48 NGMIENVIGTFELPYAV--ASNFQINGRDVLVPLVVEEPS 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,877,704
Number of Sequences: 62578
Number of extensions: 284501
Number of successful extensions: 655
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 40
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)