BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027107
         (228 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
           Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
           Structure
          Length = 63

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 100
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60


>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
           Minimized Mean Structure
 pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
           Structures
          Length = 70

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 100
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63


>pdb|1MPM|A Chain A, Maltoporin Maltose Complex
 pdb|1MPM|B Chain B, Maltoporin Maltose Complex
 pdb|1MPM|C Chain C, Maltoporin Maltose Complex
 pdb|1MPN|A Chain A, Maltoporin Maltotriose Complex
 pdb|1MPN|B Chain B, Maltoporin Maltotriose Complex
 pdb|1MPN|C Chain C, Maltoporin Maltotriose Complex
 pdb|1MPO|A Chain A, Maltoporin Maltohexaose Complex
 pdb|1MPO|B Chain B, Maltoporin Maltohexaose Complex
 pdb|1MPO|C Chain C, Maltoporin Maltohexaose Complex
 pdb|1MPQ|A Chain A, Maltoporin Trehalose Complex
 pdb|1MPQ|B Chain B, Maltoporin Trehalose Complex
 pdb|1MPQ|C Chain C, Maltoporin Trehalose Complex
 pdb|1AF6|A Chain A, Maltoporin Sucrose Complex
 pdb|1AF6|B Chain B, Maltoporin Sucrose Complex
 pdb|1AF6|C Chain C, Maltoporin Sucrose Complex
 pdb|1MAL|A Chain A, Structural Basis For Sugar Translocation Through
           Maltoporin Channels At 3.1 Angstroms Resolution
 pdb|1MAL|B Chain B, Structural Basis For Sugar Translocation Through
           Maltoporin Channels At 3.1 Angstroms Resolution
 pdb|1MAL|C Chain C, Structural Basis For Sugar Translocation Through
           Maltoporin Channels At 3.1 Angstroms Resolution
          Length = 421

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 168 DYKSSELRNEFVFVD--SVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEG 223
           DY  + LR+ +  VD  S DGW++T    QSV     +F V   +   +S   GL +G
Sbjct: 192 DYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQG 249


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,853,662
Number of Sequences: 62578
Number of extensions: 204884
Number of successful extensions: 345
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)