Query 027107
Match_columns 228
No_of_seqs 252 out of 1298
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.1E-25 3.8E-30 161.8 5.8 60 43-102 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 88.7 0.24 8.1E-06 36.7 2.5 29 38-68 2-31 (77)
3 1u3e_M HNH homing endonuclease 80.9 0.28 9.4E-06 39.9 -0.4 39 44-85 109-147 (174)
4 3jtz_A Integrase; four strande 78.6 4.8 0.00016 29.6 5.8 44 47-90 28-75 (88)
5 1z1b_A Integrase; protein-DNA 73.7 3.8 0.00013 34.8 4.7 41 46-90 15-55 (356)
6 3ju0_A Phage integrase; four s 65.0 12 0.0004 28.5 5.4 44 47-90 28-75 (108)
7 2ftc_I Mitochondrial ribosomal 53.0 22 0.00076 27.6 5.2 36 55-92 80-115 (118)
8 3r8s_M 50S ribosomal protein L 39.5 28 0.00096 27.8 3.9 35 55-92 92-126 (136)
9 1x60_A Sporulation-specific N- 38.5 18 0.00063 24.8 2.4 23 65-87 45-67 (79)
10 1uta_A FTSN, MSGA, cell divisi 35.8 34 0.0012 23.7 3.5 25 64-88 44-68 (81)
11 1ffk_F Ribosomal protein L10E; 28.9 66 0.0022 26.4 4.5 45 46-93 98-146 (157)
12 1vq8_H 50S ribosomal protein L 25.4 64 0.0022 26.8 3.9 45 47-93 111-160 (171)
13 2pa2_A 60S ribosomal protein L 23.4 49 0.0017 27.0 2.8 37 55-93 94-131 (151)
14 1b69_A Protein (integrase); in 22.6 97 0.0033 22.1 3.9 24 39-62 7-30 (69)
15 2bn8_A CEDA, cell division act 21.8 29 0.001 25.5 1.0 40 40-82 36-75 (87)
16 3j21_N 50S ribosomal protein L 21.5 64 0.0022 27.1 3.2 38 55-94 122-160 (181)
17 1kcq_A Gelsolin, brevin, ADF, 21.3 1.3E+02 0.0045 21.8 4.6 36 53-88 27-62 (104)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.1e-25 Score=161.82 Aligned_cols=60 Identities=57% Similarity=0.967 Sum_probs=57.1
Q ss_pred ceeEEEECCCCcEEEEEecCCC-CeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027107 43 VYRGVRMRNWGKWVSEIREPRK-KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL 102 (228)
Q Consensus 43 ~yRGVr~r~~GKW~AeIr~p~~-kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~ 102 (228)
+||||+++++|||+|+|+.|.+ +++||||+|+|+||||+|||+|+++++|..+.+|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999998899999999999974 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.74 E-value=0.24 Score=36.69 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCCCCceeEEEEC-CCCcEEEEEecCCCCeEE
Q 027107 38 SSKHPVYRGVRMR-NWGKWVSEIREPRKKSRI 68 (228)
Q Consensus 38 ~~~~s~yRGVr~r-~~GKW~AeIr~p~~kkri 68 (228)
.+.+|+|+||.+. +.+.|+|+-.+ ++++.
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 3567899999555 67999999998 56554
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.89 E-value=0.28 Score=39.91 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=29.4
Q ss_pred eeEEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHH
Q 027107 44 YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDV 85 (228)
Q Consensus 44 yRGVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~ 85 (228)
++||.....++|.+.|.. . +.++||.|.|.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456633333568898888 5 67789999999999999653
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=78.57 E-value=4.8 Score=29.57 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=31.8
Q ss_pred EEECCCC--cEEEEEecCCCCeEEEecCCC--CHHHHHHHHHHHHHHh
Q 027107 47 VRMRNWG--KWVSEIREPRKKSRIWLGTFP--TPEMAARAHDVAALSI 90 (228)
Q Consensus 47 Vr~r~~G--KW~AeIr~p~~kkriwLGtF~--T~EeAArAYD~Aa~~l 90 (228)
++.+..| .|+-+.+...+.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3445444 499998885566789999998 5788887777666555
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=73.69 E-value=3.8 Score=34.77 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=29.7
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHh
Q 027107 46 GVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSI 90 (228)
Q Consensus 46 GVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l 90 (228)
||+++..|.|+.++.. .|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5776777899877655 788899996 8888877665544433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=64.95 E-value=12 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEECCCC--cEEEEEecCCCCeEEEecCCC--CHHHHHHHHHHHHHHh
Q 027107 47 VRMRNWG--KWVSEIREPRKKSRIWLGTFP--TPEMAARAHDVAALSI 90 (228)
Q Consensus 47 Vr~r~~G--KW~AeIr~p~~kkriwLGtF~--T~EeAArAYD~Aa~~l 90 (228)
++....| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445444 499998885566789999998 4778777776665555
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=53.04 E-value=22 Score=27.59 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=30.7
Q ss_pred EEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcC
Q 027107 55 WVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG 92 (228)
Q Consensus 55 W~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G 92 (228)
|+|.|.. +..-+-++...+++.|..|...|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999998 77777777778899999999999988743
No 8
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=39.51 E-value=28 Score=27.76 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=29.6
Q ss_pred EEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcC
Q 027107 55 WVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG 92 (228)
Q Consensus 55 W~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G 92 (228)
|+|.|.. +..-+-++. .+++.|..|...|+.+|-+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999998 777777777 5999999999999987743
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=38.48 E-value=18 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHHH
Q 027107 65 KSRIWLGTFPTPEMAARAHDVAA 87 (228)
Q Consensus 65 kkriwLGtF~T~EeAArAYD~Aa 87 (228)
--|+++|.|.+.++|..+.+...
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHH
Confidence 35899999999999998866543
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=35.80 E-value=34 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=19.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHHH
Q 027107 64 KKSRIWLGTFPTPEMAARAHDVAAL 88 (228)
Q Consensus 64 ~kkriwLGtF~T~EeAArAYD~Aa~ 88 (228)
.--|+.+|-|.+.++|..+.+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3458999999999999988665443
No 11
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=28.94 E-value=66 Score=26.36 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=32.0
Q ss_pred EEEEC-CCCc---EEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 027107 46 GVRMR-NWGK---WVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGN 93 (228)
Q Consensus 46 GVr~r-~~GK---W~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G~ 93 (228)
.+|++ ..|+ |+|.|.. +..-+-+.. ..++.|..|...|+.+|-+.
T Consensus 98 etrMg~gkG~p~~wvArVk~--G~ilfei~g-v~~~~A~eAlr~A~~KlP~k 146 (157)
T 1ffk_F 98 GDGMRAPFGKSVGTAARSHG--ANHDFIAWV-NPDPAVEFAWRRAYMKVTPT 146 (157)
T ss_pred cccccCCCCCccEEEEEEcC--CCEEEEEec-cCHHHHHHHHHHHHhhCCCc
Confidence 56766 3454 9999997 544444444 56779999999999887543
No 12
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=25.40 E-value=64 Score=26.84 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=31.5
Q ss_pred EEEC-CCCc---EEEEEecCCCCeEEEecC-CCCHHHHHHHHHHHHHHhcCC
Q 027107 47 VRMR-NWGK---WVSEIREPRKKSRIWLGT-FPTPEMAARAHDVAALSIKGN 93 (228)
Q Consensus 47 Vr~r-~~GK---W~AeIr~p~~kkriwLGt-F~T~EeAArAYD~Aa~~l~G~ 93 (228)
++++ ..|+ |+|.|.. +..-+-+.+ -.+++.|..|...|+.+|-+.
T Consensus 111 ~rMg~gkG~p~~wvArVk~--G~ilfei~~~~v~~~~A~eAlr~A~~KLP~k 160 (171)
T 1vq8_H 111 DGMRAAFGKIVGTAARVQA--GEQLFTAYCNVEDAEHVKEAFRRAYNKITPS 160 (171)
T ss_dssp CCSTTCCCEEEEEEEEECT--TCEEEEEEECTTTHHHHHHHHHHHGGGSSSC
T ss_pred ccccccCCCCcEEEEEECC--CCEEEEEECcCCCHHHHHHHHHHHHhhCCCc
Confidence 4555 3454 9999987 554444443 368999999999999887543
No 13
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=23.42 E-value=49 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=27.7
Q ss_pred EEEEEecCCCCeEEEecCC-CCHHHHHHHHHHHHHHhcCC
Q 027107 55 WVSEIREPRKKSRIWLGTF-PTPEMAARAHDVAALSIKGN 93 (228)
Q Consensus 55 W~AeIr~p~~kkriwLGtF-~T~EeAArAYD~Aa~~l~G~ 93 (228)
|+|.|.. +..-+-+..- .+++.|..|...|+.+|-+.
T Consensus 94 wvArVk~--G~ilfei~~~~v~~~~A~eAlr~A~~KlP~k 131 (151)
T 2pa2_A 94 TVARVHI--GQVIMSIRTKLQNKEHVIEALRRAKFKFPGR 131 (151)
T ss_dssp CEEEECT--TBEEEEEEECGGGHHHHHHHHHHHGGGSSSC
T ss_pred EEEEECC--CCEEEEEECCCCCHHHHHHHHHHHHhhCCCc
Confidence 9999997 5544445443 67899999999999887443
No 14
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=22.58 E-value=97 Score=22.08 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=19.4
Q ss_pred CCCCceeEEEECCCCcEEEEEecC
Q 027107 39 SKHPVYRGVRMRNWGKWVSEIREP 62 (228)
Q Consensus 39 ~~~s~yRGVr~r~~GKW~AeIr~p 62 (228)
....-+.|+.+|..|+|+..+...
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECT
T ss_pred CCCccCCCeEEccCCcEEEEEEcC
Confidence 344567889999889999999884
No 15
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=21.77 E-value=29 Score=25.52 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCCceeEEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHH
Q 027107 40 KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARA 82 (228)
Q Consensus 40 ~~s~yRGVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArA 82 (228)
+--+||-|+.-+ |||+|.+.. +..-.---.|..+|.|-|=
T Consensus 36 kmd~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqrw 75 (87)
T 2bn8_A 36 KMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQRW 75 (87)
T ss_dssp CTTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHHH
T ss_pred hcccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHHH
Confidence 345799998765 999999877 3322223567778777653
No 16
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.52 E-value=64 Score=27.09 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.3
Q ss_pred EEEEEecCCCCeEEEecCC-CCHHHHHHHHHHHHHHhcCCC
Q 027107 55 WVSEIREPRKKSRIWLGTF-PTPEMAARAHDVAALSIKGNS 94 (228)
Q Consensus 55 W~AeIr~p~~kkriwLGtF-~T~EeAArAYD~Aa~~l~G~~ 94 (228)
|+|.|.. +..-+-+.+- .+.|.|..|...|+.+|-+..
T Consensus 122 wvArVk~--Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t 160 (181)
T 3j21_N 122 LAARLKK--DQKILSIRVNRQHLKFAIEGARRAAMKFPCKC 160 (181)
T ss_dssp CEEEECS--SEEEEEEEECSTTHHHHHHHHHHHHHSSSSCC
T ss_pred EEEEEcC--CCEEEEEEecCCCHHHHHHHHHHHhccCCCCe
Confidence 9999987 5544555544 579999999999999886554
No 17
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=21.32 E-value=1.3e+02 Score=21.77 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHH
Q 027107 53 GKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAL 88 (228)
Q Consensus 53 GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~ 88 (228)
..--+.|-.....-.+|.|...+..|.+.|-+.|..
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~ 62 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344578888667788999999999999999988754
Done!