Query 027107
Match_columns 228
No_of_seqs 252 out of 1298
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 07:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 1.6E-25 1.2E-29 159.8 5.8 60 43-102 2-62 (63)
2 d2fh1a2 d.109.1.1 (A:533-628) 29.6 38 0.0028 22.9 4.8 34 55-88 32-65 (96)
3 d1aisa1 d.129.1.1 (A:1-92) TAT 27.9 42 0.0031 22.8 4.8 50 39-91 38-88 (92)
4 d1utaa_ d.58.52.1 (A:) Cell di 27.6 27 0.002 22.5 3.5 23 64-86 40-62 (77)
5 d1mp9a1 d.129.1.1 (A:5-96) TAT 26.9 64 0.0047 21.7 5.6 50 38-90 37-87 (92)
6 d1qnaa1 d.129.1.1 (A:17-115) T 25.7 89 0.0065 21.3 6.3 49 40-91 37-86 (99)
7 d2fh1a3 d.109.1.1 (A:629-741) 25.0 61 0.0045 22.2 5.3 34 57-90 43-76 (113)
8 d1vqoh1 d.41.4.1 (H:1-163) Rib 23.4 35 0.0025 26.1 3.8 41 48-90 112-157 (163)
9 d1mp9a2 d.129.1.1 (A:97-197) T 22.6 70 0.0051 21.9 5.2 50 39-91 37-87 (101)
10 d1aisa2 d.129.1.1 (A:93-181) T 21.9 84 0.0061 21.0 5.4 50 39-91 37-87 (89)
11 d1kcqa_ d.109.1.1 (A:) Gelsoli 20.7 57 0.0041 22.0 4.3 36 53-88 27-62 (104)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.91 E-value=1.6e-25 Score=159.76 Aligned_cols=60 Identities=55% Similarity=0.954 Sum_probs=55.9
Q ss_pred ceeEEEECCCCcEEEEEecCC-CCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027107 43 VYRGVRMRNWGKWVSEIREPR-KKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL 102 (228)
Q Consensus 43 ~yRGVr~r~~GKW~AeIr~p~-~kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~ 102 (228)
+||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~ 62 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 499999988899999999874 568999999999999999999999999999999999964
No 2
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.59 E-value=38 Score=22.87 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHH
Q 027107 55 WVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAL 88 (228)
Q Consensus 55 W~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~ 88 (228)
--+.|-+..++-.||.|...+.+|-..|...|..
T Consensus 32 ~d~fILd~~~~iyvW~G~~s~~~er~~a~~~a~~ 65 (96)
T d2fh1a2 32 NDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRV 65 (96)
T ss_dssp TSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3477777667789999999999999999887643
No 3
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=27.93 E-value=42 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=35.5
Q ss_pred CCCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhc
Q 027107 39 SKHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91 (228)
Q Consensus 39 ~~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~ 91 (228)
-+..+|.|++.| ..-+=..-|.. .||-+-.|. .+.|+|.+|+......++
T Consensus 38 YePe~fpgl~~R~~~p~~~~lIF~--sGkivitGa-kS~~~~~~a~~~i~~~l~ 88 (92)
T d1aisa1 38 YNPEEFPGIICHLDDPKVALLIFS--SGKLVVTGA-KSVQDIERAVAKLAQKLK 88 (92)
T ss_dssp CCTTTCSSEEEECSSSCCEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ECcccCCeEEEEeCCCcEEEEEEC--CCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 456689999766 33344445554 888877765 789999999988776653
No 4
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=27.56 E-value=27 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHH
Q 027107 64 KKSRIWLGTFPTPEMAARAHDVA 86 (228)
Q Consensus 64 ~kkriwLGtF~T~EeAArAYD~A 86 (228)
.--|+.+|.|.+.++|..+.+..
T Consensus 40 ~~yRV~vGpf~~~~~A~~~~~~L 62 (77)
T d1utaa_ 40 GWNRVVIGPVKGKENADSTLNRL 62 (77)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHH
Confidence 44589999999999999986654
No 5
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=26.92 E-value=64 Score=21.70 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCCCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHh
Q 027107 38 SSKHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSI 90 (228)
Q Consensus 38 ~~~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l 90 (228)
.-+..+|.|+.+| ..-+=..-|.. .||-+-.|. .+.+++..|+......+
T Consensus 37 ~YePe~fpgli~R~~~p~~t~lIF~--SGkivitGa-ks~~~~~~a~~~~~~~L 87 (92)
T d1mp9a1 37 EYDPDQFPGLIFRLESPKITSLIFK--SGKMVVTGA-KSTDELIKAVKRIIKTL 87 (92)
T ss_dssp BCCTTTCSSEEEEETTTTEEEEECT--TSEEEEECC-SSHHHHHHHHHHHHHHH
T ss_pred EECCccCceEEEEECCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 3456789999555 33455556665 888777775 78999999998877655
No 6
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.74 E-value=89 Score=21.32 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=36.5
Q ss_pred CCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhc
Q 027107 40 KHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91 (228)
Q Consensus 40 ~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~ 91 (228)
+..+|-|+.+| ..-|=.+-|.. .||-+-.|. .+.|+|..|....+..++
T Consensus 37 ePe~fpgli~R~~~P~~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~l~ 86 (99)
T d1qnaa1 37 NPKRFAAVIMRIREPKTTALIFA--SGKMVCTGA-KSEDFSKMAARKYARIVQ 86 (99)
T ss_dssp CTTTCSEEEEEETTTTEEEEEET--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccCCEEEEEeCCCcEEEEEEc--CCEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 56789998665 33455566666 898888786 688999999988877775
No 7
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=61 Score=22.24 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.9
Q ss_pred EEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHh
Q 027107 57 SEIREPRKKSRIWLGTFPTPEMAARAHDVAALSI 90 (228)
Q Consensus 57 AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l 90 (228)
+.|-+....-.||+|.-.+..+-+.|...|...+
T Consensus 43 vfILD~g~~ifvW~G~~a~~~er~~a~~~A~~~~ 76 (113)
T d2fh1a3 43 VMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYI 76 (113)
T ss_dssp EEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 6777766778999999999999999999886655
No 8
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=23.36 E-value=35 Score=26.09 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=30.0
Q ss_pred EEC-CCCc---EEEEEecCCCCeEEEecCC-CCHHHHHHHHHHHHHHh
Q 027107 48 RMR-NWGK---WVSEIREPRKKSRIWLGTF-PTPEMAARAHDVAALSI 90 (228)
Q Consensus 48 r~r-~~GK---W~AeIr~p~~kkriwLGtF-~T~EeAArAYD~Aa~~l 90 (228)
+++ ..|+ |+|+|.. +..-+-|+.= .+.|.|..|...|+.+|
T Consensus 112 ~Mg~gkG~p~~~aArVk~--G~ilfei~~~~~~~~~akeALr~A~~KL 157 (163)
T d1vqoh1 112 GMRAAFGKIVGTAARVQA--GEQLFTAYCNVEDAEHVKEAFRRAYNKI 157 (163)
T ss_dssp CSTTCCCEEEEEEEEECT--TCEEEEEEECSTTHHHHHHHHHHHGGGS
T ss_pred cccCCCCCccEEEEEECC--CCEEEEEEeccccHHHHHHHHHHHhccC
Confidence 444 3465 9999998 6666666654 46778889999888776
No 9
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=22.62 E-value=70 Score=21.94 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=36.5
Q ss_pred CCCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhc
Q 027107 39 SKHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91 (228)
Q Consensus 39 ~~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~ 91 (228)
=+..+|.|+.+| ..-|-.+-|.. .||-+-.|. .+.+++.+|+......+.
T Consensus 37 YePe~fpgli~R~~~pk~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~L~ 87 (101)
T d1mp9a2 37 YEPEQFPGLIYRMDEPRVVLLIFS--SGKMVITGA-KREDEVHKAVKKIFDKLV 87 (101)
T ss_dssp CCTTTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ECcccCCeEEEEecCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 355779999655 33465666666 888877776 789999999988766554
No 10
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=21.91 E-value=84 Score=21.01 Aligned_cols=50 Identities=16% Similarity=0.027 Sum_probs=35.7
Q ss_pred CCCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhc
Q 027107 39 SKHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91 (228)
Q Consensus 39 ~~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~ 91 (228)
-+..+|-||.+| ..-+=.+-|.. .||-+-.|. .+.++|.+|+......+.
T Consensus 37 Y~Pe~fpgli~R~~~p~~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~L~ 87 (89)
T d1aisa2 37 YEPEQFPGVIYRVKEPKSVILLFS--SGKIVCSGA-KSEADAWEAVRKLLRELD 87 (89)
T ss_dssp CCTTTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred ECcccCceEEEEEcCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHHh
Confidence 456789999655 33344555555 998888886 789999999988776553
No 11
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.66 E-value=57 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHH
Q 027107 53 GKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAL 88 (228)
Q Consensus 53 GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~ 88 (228)
.-.-+.|-...+.-.+|+|...+..|-..|-..|..
T Consensus 27 ~s~dvfILd~~~~iyvW~G~~s~~~ek~~a~~~a~~ 62 (104)
T d1kcqa_ 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCeEEEEECCcCCHHHHHHHHHHHHH
Confidence 334577777666778999999999999999887743
Done!