BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027109
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1T5H1|ADD_MYCVP Adenosine deaminase OS=Mycobacterium vanbaalenii (strain DSM 7251 /
PYR-1) GN=add PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 90 GNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLV 142
+G++ LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 244 ADGNAKLGRLASLLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTV 297
>sp|Q9VD26|ZFPL1_DROME Zinc finger protein-like 1 homolog OS=Drosophila melanogaster
GN=CG5382 PE=1 SV=1
Length = 299
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 172 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 214
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|B3P7K6|ZFPL1_DROER Zinc finger protein-like 1 homolog OS=Drosophila erecta GN=GG12524
PE=3 SV=1
Length = 298
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 172 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 214
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|Q298N4|ZFPL1_DROPS Zinc finger protein-like 1 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA18838 PE=3 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 177 SGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 214
S EQ LVC HV+H DCL R +A P CP C
Sbjct: 59 SLEQGECVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPGC 100
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 169 LGMGSTIP-------------SGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214
LG+GS +P G A L CGH + CLE A D R CP C
Sbjct: 4 LGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTC 62
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 183 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214
A+ CGHV+ DC+E+R ++ R CP C
Sbjct: 718 TAIKTCGHVFCKDCVEERLTS---RSRKCPNC 746
>sp|P56450|MC4R_MOUSE Melanocortin receptor 4 OS=Mus musculus GN=Mc4r PE=1 SV=3
Length = 332
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 56 LNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGNHGNGSSSLGKGPP 101
+N+ HH+ + S+ H ++R + G HGN S SLGKG P
Sbjct: 1 MNSTHHHGMYTSL----------HLWNRSSYGLHGNASESLGKGHP 36
>sp|A4TEW1|ADD_MYCGI Adenosine deaminase OS=Mycobacterium gilvum (strain PYR-GCK) GN=add
PE=3 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 85 NLGNHGNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLV 142
++ G LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 239 DIDMDAEGGPKLGRLAALLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTV 297
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 179 EQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218
+QH+ V C HV+H CLE + + CP+C L
Sbjct: 720 DQHSYMVTPCNHVFHTSCLENWMNYK----LQCPVCRSPL 755
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 20/70 (28%)
Query: 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214
C IC ++ + K+ V VL CGH YH C +Q + CP C
Sbjct: 1957 CEICHEVFKSKN----------------VRVLKCGHKYHKGCFKQWLKGQS----ACPAC 1996
Query: 215 LGSLMQVESS 224
G + E S
Sbjct: 1997 QGRDLLTEES 2006
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum
GN=LCY1 PE=1 SV=1
Length = 500
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 49 TDNSVKLLNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGN----HGNGSSSLGKGPPSRE 104
T N+++ LN HH + + S F H++ + LG G+ S+ L P +++
Sbjct: 7 TPNNLEFLNPHHGFAVKASTFRSEKHHNFGSRKFCETLGRSVCVKGSSSALLELVPETKK 66
Query: 105 ERLSFKLASH 114
E L F+L +
Sbjct: 67 ENLDFELPMY 76
>sp|A4IPN3|PROB_GEOTN Glutamate 5-kinase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=proB PE=3 SV=1
Length = 374
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 129 PFSRSERIRFSSLVTNAASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC 188
PF + ++R + +A T+ + G + LL R LL G T SG+ HA+ V+
Sbjct: 257 PFPKQMQMRKQWIAYHAPVSGTITVDSGAEEALLDRGKSLLPAGVTAVSGDFHAMDVVNV 316
Query: 189 ----------GHVYHA 194
G VY+A
Sbjct: 317 INEKGVTIGRGQVYYA 332
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 188 CGHVYHADCLEQRTSAEDIRDPPCPLCLGS-LMQVESSGVQE 228
CGHV+H DC++ S+ CPLC + L + G+QE
Sbjct: 159 CGHVFHVDCVDTWLSSY----VTCPLCRSNQLFSDKDLGMQE 196
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 183 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214
A+ VCGHV+ + C ++R +A R CP C
Sbjct: 639 TAITVCGHVFCSKCTQERLAA---RLRRCPSC 667
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,630,529
Number of Sequences: 539616
Number of extensions: 3408835
Number of successful extensions: 9524
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 9495
Number of HSP's gapped (non-prelim): 57
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)