Query 027109
Match_columns 228
No_of_seqs 162 out of 1114
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 8.5E-14 1.8E-18 92.6 1.9 44 153-215 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.4 1.5E-13 3.3E-18 101.4 2.7 58 149-215 16-73 (73)
3 PF12861 zf-Apc11: Anaphase-pr 99.3 3.6E-12 7.8E-17 97.4 4.7 65 151-221 20-84 (85)
4 COG5194 APC11 Component of SCF 99.3 5.5E-12 1.2E-16 95.5 4.7 71 146-222 14-84 (88)
5 KOG4628 Predicted E3 ubiquitin 99.2 8.8E-12 1.9E-16 116.1 3.3 53 153-223 230-282 (348)
6 KOG2930 SCF ubiquitin ligase, 99.1 1E-10 2.2E-15 92.5 3.5 71 146-221 40-110 (114)
7 COG5243 HRD1 HRD ubiquitin lig 99.0 1.8E-10 3.8E-15 108.2 3.7 60 151-219 286-345 (491)
8 KOG1493 Anaphase-promoting com 99.0 1.4E-10 3.1E-15 87.3 0.4 69 147-221 15-83 (84)
9 PF15227 zf-C3HC4_4: zinc fing 99.0 3.6E-10 7.8E-15 75.4 2.3 42 155-214 1-42 (42)
10 PHA02929 N1R/p28-like protein; 98.9 4.5E-10 9.7E-15 100.2 3.6 57 151-221 173-229 (238)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 8E-10 1.7E-14 71.9 2.5 39 155-214 1-39 (39)
12 cd00162 RING RING-finger (Real 98.9 1.4E-09 3E-14 69.5 3.6 45 154-218 1-45 (45)
13 COG5540 RING-finger-containing 98.9 7.7E-10 1.7E-14 101.7 2.9 51 152-220 323-373 (374)
14 PLN03208 E3 ubiquitin-protein 98.9 2E-09 4.4E-14 93.3 4.4 54 151-222 17-82 (193)
15 KOG0320 Predicted E3 ubiquitin 98.8 5.2E-09 1.1E-13 89.8 3.8 52 151-222 130-181 (187)
16 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.8E-09 8.2E-14 72.0 2.1 47 152-220 2-49 (50)
17 smart00504 Ubox Modified RING 98.7 1.2E-08 2.6E-13 71.3 2.9 48 153-222 2-49 (63)
18 PF00097 zf-C3HC4: Zinc finger 98.7 1.3E-08 2.8E-13 66.1 2.4 41 155-214 1-41 (41)
19 KOG0802 E3 ubiquitin ligase [P 98.6 1.5E-08 3.2E-13 99.1 2.6 53 152-221 291-343 (543)
20 KOG0317 Predicted E3 ubiquitin 98.6 2.1E-08 4.4E-13 91.4 3.2 51 151-223 238-288 (293)
21 smart00184 RING Ring finger. E 98.6 3.5E-08 7.5E-13 60.8 3.2 28 184-214 12-39 (39)
22 PF14634 zf-RING_5: zinc-RING 98.6 3.9E-08 8.5E-13 65.6 3.4 44 154-216 1-44 (44)
23 PHA02926 zinc finger-like prot 98.5 1E-07 2.2E-12 84.6 4.3 64 151-223 169-234 (242)
24 PF13445 zf-RING_UBOX: RING-ty 98.5 7.8E-08 1.7E-12 64.8 2.2 43 155-212 1-43 (43)
25 KOG0823 Predicted E3 ubiquitin 98.5 9E-08 1.9E-12 84.9 2.7 53 151-222 46-98 (230)
26 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.9E-12 89.8 3.8 49 151-221 25-73 (397)
27 KOG1734 Predicted RING-contain 98.4 6.3E-08 1.4E-12 88.0 -0.0 63 150-222 222-284 (328)
28 COG5574 PEX10 RING-finger-cont 98.2 8.2E-07 1.8E-11 80.3 3.1 55 145-222 209-265 (271)
29 KOG2164 Predicted E3 ubiquitin 98.2 7.2E-07 1.6E-11 86.6 2.2 54 152-223 186-240 (513)
30 KOG0287 Postreplication repair 98.1 1.1E-06 2.3E-11 82.4 2.1 50 151-222 22-71 (442)
31 KOG0827 Predicted E3 ubiquitin 98.1 1.4E-06 2.9E-11 82.7 2.7 53 152-219 4-56 (465)
32 KOG2177 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 72.0 2.3 44 151-216 12-55 (386)
33 KOG0828 Predicted E3 ubiquitin 98.0 1.8E-06 4E-11 83.9 2.1 63 152-220 571-635 (636)
34 PF04564 U-box: U-box domain; 98.0 2.8E-06 6.1E-11 62.4 2.5 52 151-223 3-54 (73)
35 smart00744 RINGv The RING-vari 98.0 5.4E-06 1.2E-10 57.1 3.0 30 184-215 15-49 (49)
36 TIGR00570 cdk7 CDK-activating 97.9 7.1E-06 1.5E-10 75.9 3.5 57 150-222 1-57 (309)
37 KOG0804 Cytoplasmic Zn-finger 97.8 8E-06 1.7E-10 78.6 2.2 50 150-219 173-222 (493)
38 PF11793 FANCL_C: FANCL C-term 97.8 2.1E-06 4.6E-11 63.0 -1.4 58 152-221 2-68 (70)
39 COG5432 RAD18 RING-finger-cont 97.7 1.9E-05 4.2E-10 72.8 2.1 49 152-222 25-73 (391)
40 KOG0825 PHD Zn-finger protein 97.5 2.5E-05 5.4E-10 79.5 0.8 54 151-223 122-175 (1134)
41 KOG1941 Acetylcholine receptor 97.5 4.9E-05 1.1E-09 72.5 2.1 53 151-219 364-416 (518)
42 KOG0978 E3 ubiquitin ligase in 97.4 6.5E-05 1.4E-09 75.9 1.9 51 151-222 642-692 (698)
43 KOG1645 RING-finger-containing 97.3 0.00011 2.4E-09 70.3 2.2 53 151-218 3-55 (463)
44 KOG1039 Predicted E3 ubiquitin 97.2 0.00018 4E-09 67.5 2.6 63 150-223 159-225 (344)
45 KOG0311 Predicted E3 ubiquitin 97.2 0.00011 2.4E-09 69.2 0.6 51 152-222 43-93 (381)
46 COG5219 Uncharacterized conser 97.1 0.00023 4.9E-09 74.1 2.4 56 151-219 1468-1523(1525)
47 PF10367 Vps39_2: Vacuolar sor 97.1 0.0001 2.2E-09 56.0 -0.2 32 151-198 77-108 (109)
48 PF11789 zf-Nse: Zinc-finger o 97.0 0.00043 9.2E-09 49.2 2.0 45 150-213 9-53 (57)
49 KOG2879 Predicted E3 ubiquitin 96.8 0.00097 2.1E-08 61.1 3.2 64 145-227 232-295 (298)
50 KOG0824 Predicted E3 ubiquitin 96.8 0.00074 1.6E-08 62.5 2.1 53 149-222 4-56 (324)
51 KOG4265 Predicted E3 ubiquitin 96.7 0.0012 2.6E-08 62.1 3.4 47 152-220 290-337 (349)
52 KOG4159 Predicted E3 ubiquitin 96.7 0.00069 1.5E-08 64.8 1.6 48 151-220 83-130 (398)
53 PF14835 zf-RING_6: zf-RING of 96.7 0.00042 9E-09 50.8 -0.2 48 152-222 7-54 (65)
54 COG5152 Uncharacterized conser 96.6 0.001 2.2E-08 58.8 1.5 44 152-217 196-239 (259)
55 KOG3039 Uncharacterized conser 96.5 0.0016 3.5E-08 59.1 2.6 59 151-227 220-278 (303)
56 KOG3970 Predicted E3 ubiquitin 96.5 0.0022 4.9E-08 57.6 3.1 53 153-221 51-107 (299)
57 KOG1940 Zn-finger protein [Gen 96.4 0.0018 3.9E-08 59.3 2.0 48 151-216 157-204 (276)
58 KOG0297 TNF receptor-associate 96.3 0.0013 2.8E-08 62.5 0.8 51 151-222 20-70 (391)
59 KOG4172 Predicted E3 ubiquitin 96.0 0.0022 4.7E-08 46.0 0.4 46 153-220 8-55 (62)
60 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.0064 1.4E-07 54.6 3.1 55 150-223 111-165 (260)
61 KOG4445 Uncharacterized conser 95.9 0.0032 7E-08 58.6 1.1 58 151-223 114-190 (368)
62 KOG2660 Locus-specific chromos 95.8 0.0034 7.5E-08 58.6 0.8 51 151-222 14-64 (331)
63 KOG1002 Nucleotide excision re 95.7 0.0092 2E-07 59.3 3.5 55 150-222 534-589 (791)
64 KOG2034 Vacuolar sorting prote 95.7 0.0056 1.2E-07 63.4 2.1 34 152-201 817-850 (911)
65 KOG1785 Tyrosine kinase negati 95.6 0.0054 1.2E-07 59.1 1.6 52 151-222 368-419 (563)
66 PHA02825 LAP/PHD finger-like p 95.6 0.014 3.1E-07 49.7 3.9 53 149-222 5-62 (162)
67 KOG1428 Inhibitor of type V ad 95.5 0.0087 1.9E-07 65.1 2.7 55 150-219 3484-3544(3738)
68 COG5236 Uncharacterized conser 95.2 0.015 3.2E-07 55.4 2.9 54 148-221 57-110 (493)
69 KOG2114 Vacuolar assembly/sort 95.1 0.012 2.6E-07 60.9 2.1 44 151-218 839-882 (933)
70 KOG1813 Predicted E3 ubiquitin 94.9 0.0066 1.4E-07 56.2 -0.2 46 151-218 240-285 (313)
71 KOG4185 Predicted E3 ubiquitin 94.8 0.019 4.1E-07 51.7 2.4 52 152-218 3-54 (296)
72 KOG1571 Predicted E3 ubiquitin 94.6 0.016 3.4E-07 54.8 1.5 44 151-219 304-347 (355)
73 PHA02862 5L protein; Provision 94.6 0.032 6.9E-07 47.1 3.0 29 191-221 27-55 (156)
74 COG5222 Uncharacterized conser 94.4 0.026 5.6E-07 52.8 2.5 44 153-216 275-318 (427)
75 KOG1952 Transcription factor N 94.3 0.026 5.6E-07 58.5 2.4 55 150-218 189-246 (950)
76 PF05883 Baculo_RING: Baculovi 94.2 0.04 8.6E-07 45.7 2.8 36 152-202 26-67 (134)
77 KOG4692 Predicted E3 ubiquitin 94.1 0.033 7.2E-07 53.1 2.5 59 146-226 416-474 (489)
78 PF14447 Prok-RING_4: Prokaryo 94.1 0.018 4E-07 40.9 0.5 33 184-222 21-53 (55)
79 PF12906 RINGv: RING-variant d 93.7 0.015 3.3E-07 39.6 -0.5 22 191-214 26-47 (47)
80 KOG0827 Predicted E3 ubiquitin 93.4 0.0063 1.4E-07 58.3 -3.6 52 151-220 195-246 (465)
81 PHA03096 p28-like protein; Pro 92.4 0.1 2.3E-06 48.0 2.8 55 153-218 179-236 (284)
82 KOG4275 Predicted E3 ubiquitin 91.9 0.022 4.7E-07 53.0 -2.1 43 151-219 299-342 (350)
83 KOG1814 Predicted E3 ubiquitin 91.7 0.15 3.2E-06 49.4 3.1 50 151-215 183-236 (445)
84 PF07800 DUF1644: Protein of u 91.3 0.16 3.5E-06 43.4 2.6 14 208-221 80-93 (162)
85 KOG1001 Helicase-like transcri 91.0 0.11 2.4E-06 53.0 1.6 48 153-221 455-502 (674)
86 KOG0309 Conserved WD40 repeat- 91.0 0.11 2.4E-06 53.7 1.5 24 186-213 1046-1069(1081)
87 KOG3268 Predicted E3 ubiquitin 90.9 0.15 3.3E-06 44.7 2.2 38 185-222 187-231 (234)
88 PF14570 zf-RING_4: RING/Ubox 89.5 0.31 6.7E-06 33.8 2.3 48 155-219 1-48 (48)
89 KOG3800 Predicted E3 ubiquitin 89.0 0.38 8.3E-06 44.6 3.3 34 184-220 19-52 (300)
90 KOG0826 Predicted E3 ubiquitin 88.4 0.26 5.6E-06 46.5 1.7 49 149-218 297-345 (357)
91 PF08746 zf-RING-like: RING-li 88.2 0.19 4.1E-06 33.6 0.6 26 187-214 18-43 (43)
92 KOG0298 DEAD box-containing he 86.3 0.31 6.6E-06 52.9 1.1 46 152-218 1153-1198(1394)
93 KOG3161 Predicted E3 ubiquitin 86.0 0.39 8.5E-06 49.0 1.6 46 151-217 10-55 (861)
94 KOG0801 Predicted E3 ubiquitin 85.2 0.22 4.7E-06 43.1 -0.5 29 151-194 176-204 (205)
95 KOG2932 E3 ubiquitin ligase in 84.4 0.46 9.9E-06 44.8 1.2 31 184-220 105-135 (389)
96 smart00249 PHD PHD zinc finger 84.1 0.48 1E-05 29.9 0.8 29 186-214 18-47 (47)
97 KOG3113 Uncharacterized conser 84.1 0.75 1.6E-05 42.2 2.4 53 151-223 110-162 (293)
98 KOG2066 Vacuolar assembly/sort 83.7 0.43 9.3E-06 49.5 0.7 49 152-216 784-832 (846)
99 COG5175 MOT2 Transcriptional r 83.4 1 2.2E-05 43.1 3.0 56 151-223 13-68 (480)
100 PF05290 Baculo_IE-1: Baculovi 82.8 2.3 4.9E-05 35.6 4.5 60 151-225 79-138 (140)
101 KOG1812 Predicted E3 ubiquitin 82.5 0.73 1.6E-05 44.0 1.7 56 151-220 145-204 (384)
102 KOG1829 Uncharacterized conser 82.2 0.64 1.4E-05 46.8 1.2 32 179-217 528-559 (580)
103 COG5183 SSM4 Protein involved 80.8 1.5 3.3E-05 46.0 3.3 55 150-222 10-69 (1175)
104 KOG2817 Predicted E3 ubiquitin 80.8 1 2.2E-05 43.4 2.0 53 153-221 335-387 (394)
105 KOG3053 Uncharacterized conser 77.5 1.5 3.3E-05 40.4 2.0 58 150-221 18-84 (293)
106 KOG0269 WD40 repeat-containing 74.9 1.7 3.8E-05 45.0 1.8 18 186-203 797-814 (839)
107 PF03854 zf-P11: P-11 zinc fin 74.3 1 2.2E-05 31.4 0.0 33 186-222 16-49 (50)
108 PF04710 Pellino: Pellino; In 72.8 1.2 2.5E-05 43.2 0.0 38 179-219 300-339 (416)
109 KOG4367 Predicted Zn-finger pr 72.3 2.4 5.1E-05 41.9 2.0 35 151-203 3-37 (699)
110 PLN02189 cellulose synthase 72.1 3.7 8E-05 44.1 3.5 57 149-219 31-87 (1040)
111 PF10272 Tmpp129: Putative tra 71.7 3.3 7.1E-05 39.5 2.8 36 187-222 310-354 (358)
112 PF04710 Pellino: Pellino; In 69.8 1.5 3.2E-05 42.5 0.0 69 152-220 328-402 (416)
113 PLN02436 cellulose synthase A 69.4 4.6 9.9E-05 43.5 3.5 57 149-219 33-89 (1094)
114 PF05605 zf-Di19: Drought indu 69.3 3.1 6.8E-05 28.5 1.6 40 152-218 2-41 (54)
115 PLN02400 cellulose synthase 67.4 6.3 0.00014 42.5 4.0 57 149-219 33-89 (1085)
116 KOG4718 Non-SMC (structural ma 67.4 3.6 7.7E-05 37.0 1.9 47 151-218 180-226 (235)
117 KOG3842 Adaptor protein Pellin 67.0 4.8 0.0001 38.3 2.7 71 152-222 341-417 (429)
118 PF13901 DUF4206: Domain of un 66.6 3.3 7.1E-05 36.0 1.5 27 181-216 171-197 (202)
119 KOG3899 Uncharacterized conser 66.4 4.2 9.1E-05 38.3 2.2 37 187-223 324-369 (381)
120 PLN02638 cellulose synthase A 66.0 6.2 0.00013 42.6 3.6 57 149-219 14-70 (1079)
121 KOG1100 Predicted E3 ubiquitin 65.5 2.3 4.9E-05 37.5 0.3 29 182-218 170-199 (207)
122 PF14446 Prok-RING_1: Prokaryo 65.2 4.9 0.00011 28.6 1.9 36 151-200 4-39 (54)
123 PF00628 PHD: PHD-finger; Int 65.1 0.46 1E-05 31.7 -3.2 33 184-216 16-50 (51)
124 PF04423 Rad50_zn_hook: Rad50 62.6 2.2 4.8E-05 29.3 -0.2 28 195-222 7-34 (54)
125 PF02891 zf-MIZ: MIZ/SP-RING z 62.1 7 0.00015 26.8 2.2 45 154-216 4-49 (50)
126 PF06906 DUF1272: Protein of u 60.1 12 0.00026 26.9 3.1 48 154-221 7-54 (57)
127 PLN02195 cellulose synthase A 59.7 8.9 0.00019 41.0 3.4 56 151-220 5-60 (977)
128 KOG2068 MOT2 transcription fac 58.5 5.9 0.00013 37.4 1.7 50 153-220 250-299 (327)
129 PLN02915 cellulose synthase A 57.1 11 0.00024 40.6 3.6 56 150-219 13-68 (1044)
130 PF14569 zf-UDP: Zinc-binding 55.9 12 0.00027 28.5 2.8 57 150-220 7-63 (80)
131 KOG3002 Zn finger protein [Gen 53.6 7.6 0.00017 36.1 1.6 46 149-220 45-92 (299)
132 KOG4185 Predicted E3 ubiquitin 53.3 3.2 6.9E-05 37.3 -0.9 51 152-217 207-265 (296)
133 KOG1815 Predicted E3 ubiquitin 53.2 11 0.00024 36.4 2.7 36 150-202 68-103 (444)
134 COG5109 Uncharacterized conser 51.0 8.9 0.00019 36.5 1.6 49 152-216 336-384 (396)
135 KOG1609 Protein involved in mR 49.5 11 0.00023 33.5 1.8 54 152-221 78-136 (323)
136 KOG4362 Transcriptional regula 48.0 6 0.00013 40.8 -0.0 51 152-221 21-71 (684)
137 KOG4739 Uncharacterized protei 47.7 9.7 0.00021 34.4 1.2 20 183-202 18-37 (233)
138 cd00350 rubredoxin_like Rubred 45.0 7.1 0.00015 24.4 -0.0 22 186-217 5-26 (33)
139 KOG0825 PHD Zn-finger protein 42.9 15 0.00032 38.9 1.8 58 151-219 95-154 (1134)
140 KOG2071 mRNA cleavage and poly 40.9 11 0.00024 38.2 0.6 48 142-200 504-556 (579)
141 KOG0824 Predicted E3 ubiquitin 40.1 7.3 0.00016 36.6 -0.7 56 148-224 101-156 (324)
142 COG5220 TFB3 Cdk activating ki 39.4 17 0.00036 33.6 1.4 51 150-217 8-62 (314)
143 PF12088 DUF3565: Protein of u 38.6 13 0.00028 27.1 0.5 21 180-200 9-29 (61)
144 COG3813 Uncharacterized protei 36.7 23 0.00049 27.0 1.6 26 189-220 28-53 (84)
145 KOG0802 E3 ubiquitin ligase [P 36.1 23 0.0005 35.1 2.0 45 152-222 479-523 (543)
146 KOG3005 GIY-YIG type nuclease 34.6 50 0.0011 30.6 3.7 58 152-220 182-244 (276)
147 KOG3799 Rab3 effector RIM1 and 34.2 9.1 0.0002 32.4 -1.0 46 151-217 64-116 (169)
148 PF10571 UPF0547: Uncharacteri 33.7 21 0.00046 21.5 0.8 11 154-164 2-12 (26)
149 KOG3039 Uncharacterized conser 30.7 26 0.00056 32.4 1.2 34 151-202 42-75 (303)
150 PF14311 DUF4379: Domain of un 30.0 23 0.0005 24.2 0.6 23 187-214 33-55 (55)
151 KOG3842 Adaptor protein Pellin 29.8 35 0.00075 32.7 1.9 38 178-218 312-351 (429)
152 PF07649 C1_3: C1-like domain; 29.3 30 0.00066 20.8 1.0 29 154-197 2-30 (30)
153 PF13717 zinc_ribbon_4: zinc-r 29.0 21 0.00046 22.8 0.3 34 153-193 3-36 (36)
154 smart00734 ZnF_Rad18 Rad18-lik 28.8 26 0.00057 20.9 0.7 10 209-218 2-11 (26)
155 KOG1729 FYVE finger containing 27.4 19 0.00041 33.4 -0.2 62 145-220 161-226 (288)
156 PRK11088 rrmA 23S rRNA methylt 27.0 24 0.00052 31.2 0.4 12 153-164 3-14 (272)
157 KOG1815 Predicted E3 ubiquitin 25.0 36 0.00079 32.8 1.2 37 186-222 182-240 (444)
158 smart00064 FYVE Protein presen 24.8 43 0.00094 23.4 1.3 39 151-203 9-47 (68)
159 PF07191 zinc-ribbons_6: zinc- 21.5 5.6 0.00012 29.7 -3.9 28 189-221 16-43 (70)
160 PF09723 Zn-ribbon_8: Zinc rib 20.8 24 0.00052 23.1 -0.7 26 186-216 9-34 (42)
161 KOG4021 Mitochondrial ribosoma 20.2 48 0.001 29.7 0.9 27 193-222 96-122 (239)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.40 E-value=8.5e-14 Score=92.57 Aligned_cols=44 Identities=34% Similarity=0.839 Sum_probs=35.9
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
+.|+||++.|.... .+.+++|||+||.+||.+|+. .+..||+||
T Consensus 1 d~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~~~~----~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGE---------------KVVKLPCGHVFHRSCIKEWLK----RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTS---------------CEEEETTSEEEEHHHHHHHHH----HSSB-TTTH
T ss_pred CCCcCCChhhcCCC---------------eEEEccCCCeeCHHHHHHHHH----hCCcCCccC
Confidence 36999999998754 346788999999999999998 446999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.39 E-value=1.5e-13 Score=101.42 Aligned_cols=58 Identities=26% Similarity=0.613 Sum_probs=42.0
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
+...+.|+||++.|.+..+.. .+.++...+++++|||+||.+||.+|+. ...+||+||
T Consensus 16 ~~~~d~C~IC~~~l~~~~~~~-----~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~----~~~~CP~CR 73 (73)
T PF12678_consen 16 DIADDNCAICREPLEDPCPEC-----QAPQDECPIVWGPCGHIFHFHCISQWLK----QNNTCPLCR 73 (73)
T ss_dssp SSCCSBETTTTSBTTSTTCCH-----HHCTTTS-EEEETTSEEEEHHHHHHHHT----TSSB-TTSS
T ss_pred cCcCCcccccChhhhChhhhh-----cCCccccceEecccCCCEEHHHHHHHHh----cCCcCCCCC
Confidence 445667999999997765322 1122334567789999999999999998 556999997
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.28 E-value=3.6e-12 Score=97.43 Aligned_cols=65 Identities=22% Similarity=0.447 Sum_probs=50.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.+++|+||...|+...+ ...+++.+.++ ....|+|.||.+||.+|+... ..+..||+||+.+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp----~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP----DCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCC----CccCCCCCCce-eeccCccHHHHHHHHHHHccc-cCCCCCCCcCCeeeeC
Confidence 47789999999997764 33455555544 567899999999999999854 3357999999998654
No 4
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.26 E-value=5.5e-12 Score=95.51 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=60.1
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 146 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 146 ~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.|.+..-++|+||...+.+.++.+ +...+.++..+++...|.|.||.+||.+||. .+..||+|++++...+
T Consensus 14 Wswdi~id~CaICRnhim~~C~eC--q~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~----Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 14 WSWDIPIDVCAICRNHIMGTCPEC--QFGMTPGDECPVVWGVCNHAFHDHCIYRWLD----TKGVCPLDRQTWVLAD 84 (88)
T ss_pred EecccccchhhhhhccccCcCccc--ccCCCCCCcceEEEEecchHHHHHHHHHHHh----hCCCCCCCCceeEEec
Confidence 456667789999999999998877 4445677777888899999999999999998 5789999999987655
No 5
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.8e-12 Score=116.12 Aligned_cols=53 Identities=21% Similarity=0.611 Sum_probs=45.2
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
.+|+||+|+|+.++ .+++|+|+|.||..||+.||.+ ..-.||+|++.+.+.-.
T Consensus 230 ~~CaIClEdY~~Gd---------------klRiLPC~H~FH~~CIDpWL~~---~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD---------------KLRILPCSHKFHVNCIDPWLTQ---TRTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCC---------------eeeEecCCCchhhccchhhHhh---cCccCCCCCCcCCCCCC
Confidence 48999999999987 5688999999999999999984 34579999998766543
No 6
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1e-10 Score=92.47 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=60.6
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 146 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 146 ~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.+.++.-++|+||...+.+.+..+ +++..+..+..+|+...|.|.||.+||-+||. .+..||+|.+++..-
T Consensus 40 WaWDi~vDnCAICRnHIMd~CieC-Qa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk----tr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 40 WAWDIVVDNCAICRNHIMDLCIEC-QANQSATSEECTVAWGVCNHAFHFHCISRWLK----TRNVCPLDNKEWVFQ 110 (114)
T ss_pred eeeeeeechhHHHHHHHHHHHHhh-ccCCCCCCCceEEEeeecchHHHHHHHHHHHh----hcCcCCCcCcceeEe
Confidence 367888999999999999988777 44445677888899999999999999999999 678999999987543
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.8e-10 Score=108.23 Aligned_cols=60 Identities=27% Similarity=0.658 Sum_probs=46.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
++..|.||++.+-... ......+.-.....|+|||+||.+||..|++ ++.+|||||..+-
T Consensus 286 ~D~~C~ICmde~~h~~-----~~~~~~~~~~~pKrLpCGHilHl~CLknW~E----RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPD-----HEPLPRGLDMTPKRLPCGHILHLHCLKNWLE----RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCC-----CccCcccccCCcccccccceeeHHHHHHHHH----hccCCCcccCccc
Confidence 6779999999976543 1223334333456799999999999999999 7899999999843
No 8
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.4e-10 Score=87.26 Aligned_cols=69 Identities=20% Similarity=0.432 Sum_probs=53.2
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.++....+|+||.-+|...++ ...++.++.+. ....|.|+||++||.+|+.. ...+..||+||+++..+
T Consensus 15 tW~~~~e~CGiCRm~Fdg~Cp----~Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~-~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 15 TWDAPDETCGICRMPFDGCCP----DCKLPGDDCPL-VWGYCLHAFHAHCILKWLNT-PTSQGQCPMCRQTWQFK 83 (84)
T ss_pred EEcCCCCccceEecccCCcCC----CCcCCCCCCcc-HHHHHHHHHHHHHHHHHhcC-ccccccCCcchheeEec
Confidence 345556699999999998876 44566666665 33589999999999999873 34557899999998654
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.95 E-value=3.6e-10 Score=75.42 Aligned_cols=42 Identities=33% Similarity=0.754 Sum_probs=32.0
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 155 C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
|+||++.|+++ ..|+|||+|+..||.+|+.+.+.....||+|
T Consensus 1 CpiC~~~~~~P------------------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP------------------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE------------------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc------------------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999985 4589999999999999998665555789998
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=4.5e-10 Score=100.15 Aligned_cols=57 Identities=21% Similarity=0.506 Sum_probs=42.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
....|+||++.+.+.... ...++.+++|||+||.+||.+|+. ...+||+||..+...
T Consensus 173 ~~~eC~ICle~~~~~~~~----------~~~~~vl~~C~H~FC~~CI~~Wl~----~~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIK----------NMYFGILSNCNHVFCIECIDIWKK----EKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccc----------cccceecCCCCCcccHHHHHHHHh----cCCCCCCCCCEeeEE
Confidence 356899999987764310 001224457999999999999998 568999999987543
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=8e-10 Score=71.86 Aligned_cols=39 Identities=41% Similarity=1.051 Sum_probs=31.6
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 155 C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
|+||++.+.+. +.+++|||+|+.+||++|+. .+..||+|
T Consensus 1 C~iC~~~~~~~-----------------~~~~~CGH~fC~~C~~~~~~----~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP-----------------VVVTPCGHSFCKECIEKYLE----KNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE-----------------EEECTTSEEEEHHHHHHHHH----CTSB-TTT
T ss_pred CCCCCCcccCc-----------------CEECCCCCchhHHHHHHHHH----CcCCCcCC
Confidence 88999887763 35689999999999999999 35789998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.4e-09 Score=69.53 Aligned_cols=45 Identities=33% Similarity=0.862 Sum_probs=35.5
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
.|+||.+.+.+ .+.+++|||.||..||+.|+.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE-----------------PVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC-----------------ceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCcC
Confidence 49999988733 2345679999999999999983 357799999764
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.7e-10 Score=101.66 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=42.9
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
...|+||+..|.-.+ .+.+|||.|+||..||++|+. .+...||+||..+.+
T Consensus 323 GveCaICms~fiK~d---------------~~~vlPC~H~FH~~Cv~kW~~---~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKND---------------RLRVLPCDHRFHVGCVDKWLL---GYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccc---------------eEEEeccCceechhHHHHHHh---hhcccCCccCCCCCC
Confidence 468999999886433 368899999999999999987 277899999999865
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=2e-09 Score=93.34 Aligned_cols=54 Identities=28% Similarity=0.685 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC------------CCCCCCCcCcccCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE------------DIRDPPCPLCLGSL 218 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~------------~~~~~sCPiCr~~l 218 (228)
+...|+||++.+.+. .++.|||+||..||.+|+... .+..+.||+|+..+
T Consensus 17 ~~~~CpICld~~~dP------------------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRDP------------------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCCc------------------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 456899999887653 447899999999999998521 23457899999998
Q ss_pred ccCC
Q 027109 219 MQVE 222 (228)
Q Consensus 219 ~~~~ 222 (228)
....
T Consensus 79 s~~~ 82 (193)
T PLN03208 79 SEAT 82 (193)
T ss_pred Chhc
Confidence 6543
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.2e-09 Score=89.77 Aligned_cols=52 Identities=23% Similarity=0.615 Sum_probs=43.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..+.|+||++.+.++.++ + ..|||||+..||+.-+. ....||+|++.+..++
T Consensus 130 ~~~~CPiCl~~~sek~~v---------------s-TkCGHvFC~~Cik~alk----~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPV---------------S-TKCGHVFCSQCIKDALK----NTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhcccc---------------c-cccchhHHHHHHHHHHH----hCCCCCCcccccchhh
Confidence 458899999999997532 2 68999999999999999 5688999998776553
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=3.8e-09 Score=71.97 Aligned_cols=47 Identities=32% Similarity=0.755 Sum_probs=37.1
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+..|.||++...+ +.+++|||+ |+..|+.+|+. ....||+||+.+..
T Consensus 2 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD------------------VVLLPCGHLCFCEECAERLLK----RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS------------------EEEETTCEEEEEHHHHHHHHH----TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc------------------eEEeCCCChHHHHHHhHHhcc----cCCCCCcCChhhcC
Confidence 4579999876332 467899999 99999999998 67899999998753
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.68 E-value=1.2e-08 Score=71.32 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=40.1
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..|+||.+.++++ .+++|||+|..+||++|+.+ +..||+|+..+...+
T Consensus 2 ~~Cpi~~~~~~~P------------------v~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP------------------VILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC------------------EECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCChhh
Confidence 4699999998774 34799999999999999983 578999999886544
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.66 E-value=1.3e-08 Score=66.12 Aligned_cols=41 Identities=37% Similarity=0.862 Sum_probs=34.1
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 155 C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
|+||++.+.+. +.+++|||.|+..||.+|+.. .....||+|
T Consensus 1 C~iC~~~~~~~-----------------~~~~~C~H~fC~~C~~~~~~~--~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP-----------------VILLPCGHSFCRDCLRKWLEN--SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE-----------------EEETTTSEEEEHHHHHHHHHH--TSSSBTTTT
T ss_pred CCcCCccccCC-----------------CEEecCCCcchHHHHHHHHHh--cCCccCCcC
Confidence 88999887664 247899999999999999985 356779998
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-08 Score=99.08 Aligned_cols=53 Identities=30% Similarity=0.659 Sum_probs=43.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
...|.||.+.|..... ..+..|+|||+||..||.+|++ ++.+||+||..+...
T Consensus 291 ~~~C~IC~e~l~~~~~-------------~~~~rL~C~Hifh~~CL~~W~e----r~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 291 DELCIICLEELHSGHN-------------ITPKRLPCGHIFHDSCLRSWFE----RQQTCPTCRTVLYDY 343 (543)
T ss_pred CCeeeeechhhccccc-------------cccceeecccchHHHHHHHHHH----HhCcCCcchhhhhcc
Confidence 6789999999887531 1356799999999999999999 678999999955443
No 20
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.1e-08 Score=91.43 Aligned_cols=51 Identities=24% Similarity=0.582 Sum_probs=41.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
....|.||++....++ -++|||+||..||..|+. ....||+||..+.+...
T Consensus 238 a~~kC~LCLe~~~~pS------------------aTpCGHiFCWsCI~~w~~----ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPS------------------ATPCGHIFCWSCILEWCS----EKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCC------------------cCcCcchHHHHHHHHHHc----cccCCCcccccCCCcce
Confidence 3468999998755542 379999999999999998 44679999999877653
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=3.5e-08 Score=60.82 Aligned_cols=28 Identities=32% Similarity=0.939 Sum_probs=23.8
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 184 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 184 avL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
.+++|||+||..|++.|+. .....||+|
T Consensus 12 ~~~~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 12 VVLPCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred EEecCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 5689999999999999987 244679998
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=3.9e-08 Score=65.61 Aligned_cols=44 Identities=25% Similarity=0.746 Sum_probs=35.2
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
.|.||.+.|.... ...++.|||+|+..||.++.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~---------------~~~l~~CgH~~C~~C~~~~~~----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEER---------------RPRLTSCGHIFCEKCLKKLKG----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCC---------------CeEEcccCCHHHHHHHHhhcC----CCCCCcCCCC
Confidence 3899999983221 347799999999999999982 5678999985
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.50 E-value=1e-07 Score=84.57 Aligned_cols=64 Identities=17% Similarity=0.435 Sum_probs=42.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~--~~~~~sCPiCr~~l~~~~~ 223 (228)
.+..|+||++...++... ++...--+.+|+|+||..||.+|.... ......||+||..+.....
T Consensus 169 kE~eCgICmE~I~eK~~~---------~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLE---------NDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCcccccccccc---------ccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 457899999987654210 011111234899999999999998632 1224579999998765443
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.47 E-value=7.8e-08 Score=64.81 Aligned_cols=43 Identities=35% Similarity=0.823 Sum_probs=23.8
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCc
Q 027109 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCP 212 (228)
Q Consensus 155 C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCP 212 (228)
|+||.+ +.+.+. ...+|+|||+|..+||++++.........||
T Consensus 1 CpIc~e-~~~~~n--------------~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEEN--------------PPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS---------------EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCC--------------CCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 655321 3467899999999999999986544567787
No 25
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9e-08 Score=84.92 Aligned_cols=53 Identities=26% Similarity=0.562 Sum_probs=41.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
....|-||++.-+++ .|..|||.|+.-||.+||... .+...||+|+..+..+.
T Consensus 46 ~~FdCNICLd~akdP------------------VvTlCGHLFCWpClyqWl~~~-~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP------------------VVTLCGHLFCWPCLYQWLQTR-PNSKECPVCKAEVSIDT 98 (230)
T ss_pred CceeeeeeccccCCC------------------EEeecccceehHHHHHHHhhc-CCCeeCCccccccccce
Confidence 466899999875553 345799999999999999733 34467999999987665
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=1.3e-07 Score=89.85 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
....|+||.+.|... .+++|||.||..||..|+. ....||+|+..+...
T Consensus 25 ~~l~C~IC~d~~~~P------------------vitpCgH~FCs~CI~~~l~----~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP------------------VLTSCSHTFCSLCIRRCLS----NQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc------------------cCCCCCCchhHHHHHHHHh----CCCCCCCCCCccccc
Confidence 467899999988764 2479999999999999998 346899999988654
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.3e-08 Score=88.01 Aligned_cols=63 Identities=21% Similarity=0.481 Sum_probs=46.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.++..|+||.+.+....- ..+....+-.|.|+|+||+.||..|.--+ ++++||.|+..++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~--------eegvienty~LsCnHvFHEfCIrGWcivG--KkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVD--------EEGVIENTYKLSCNHVFHEFCIRGWCIVG--KKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecc--------hhhhhhhheeeecccchHHHhhhhheeec--CCCCCchHHHHhhHhh
Confidence 367789999988765420 11112234578999999999999997655 7789999998876543
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.2e-07 Score=80.28 Aligned_cols=55 Identities=24% Similarity=0.521 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HHhcCCCCCCC-CcCcccCcccCC
Q 027109 145 AASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RTSAEDIRDPP-CPLCLGSLMQVE 222 (228)
Q Consensus 145 s~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~-wl~~~~~~~~s-CPiCr~~l~~~~ 222 (228)
...| ..+..|.||++..... .-++|||+|+..||.. |+. +... ||+||....++.
T Consensus 209 pfip-~~d~kC~lC~e~~~~p------------------s~t~CgHlFC~~Cl~~~~t~----~k~~~CplCRak~~pk~ 265 (271)
T COG5574 209 PFIP-LADYKCFLCLEEPEVP------------------SCTPCGHLFCLSCLLISWTK----KKYEFCPLCRAKVYPKK 265 (271)
T ss_pred Cccc-ccccceeeeecccCCc------------------ccccccchhhHHHHHHHHHh----hccccCchhhhhccchh
Confidence 3344 5678899999775543 3479999999999999 988 3444 999999887765
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.2e-07 Score=86.61 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=40.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCcCcccCcccCCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~-~~~~~sCPiCr~~l~~~~~ 223 (228)
.+.|+||++..... ..+.|||+||..||.+++... ...--.||||+..+..++.
T Consensus 186 ~~~CPICL~~~~~p------------------~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP------------------VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc------------------cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 67899998653332 334699999999999988654 3344679999999988653
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.13 E-value=1.1e-06 Score=82.35 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=42.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||.++|..+ .+.+|||.||.-||..+|. +++.||.|+.++-+.+
T Consensus 22 ~lLRC~IC~eyf~ip------------------~itpCsHtfCSlCIR~~L~----~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP------------------MITPCSHTFCSLCIRKFLS----YKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHhHHHHHhcCc------------------eeccccchHHHHHHHHHhc----cCCCCCceecccchhh
Confidence 456799999998875 4578999999999999999 8899999998875543
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-06 Score=82.67 Aligned_cols=53 Identities=26% Similarity=0.569 Sum_probs=36.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
...|.||.+.+.... .+.++..|||+||..||.+|++-...+ ..||||+-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~--------------~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDH--------------ELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCcccc--------------ccccccchhhHHHHHHHHHHHccCCcc-CCCCceeeccc
Confidence 357999955443322 133556799999999999999855443 46999994433
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2e-06 Score=71.98 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=38.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
+...|.||++.|..+ .+++|||.|+..||..++. ....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p------------------~~l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP------------------VLLPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC------------------ccccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 677899999999885 4589999999999999987 4478999993
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.8e-06 Score=83.88 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=41.1
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcc--eeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQH--AVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~--vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
...|+||+.++.-.... .+........ -..+.||.|+||..||++|+.. ++..||+||..+.+
T Consensus 571 t~dC~ICMt~I~l~~~~---s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTG---SDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---YKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeecc---CcchhhhhhhhccccccchHHHHHHHHHHHHHhh---hcccCCccCCCCCC
Confidence 45799999887533210 0000000000 1246799999999999999972 55789999998764
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.04 E-value=2.8e-06 Score=62.37 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=39.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+...|+|+.+.+.++ .+++|||+|-..||++|+.+ .+..||+|+..+...+.
T Consensus 3 ~~f~CpIt~~lM~dP------------------Vi~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP------------------VILPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE------------------EEETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc------------------eeCCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCcccc
Confidence 566899999998885 45799999999999999983 47899999988876543
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.99 E-value=5.4e-06 Score=57.06 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=24.5
Q ss_pred EEcCCC-----hHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 184 AVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 184 avL~CG-----HvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
.+.||. |.+|..||++|+.+. ....||+|.
T Consensus 15 l~~PC~C~G~~~~vH~~Cl~~W~~~~--~~~~C~iC~ 49 (49)
T smart00744 15 LVSPCRCKGSLKYVHQECLERWINES--GNKTCEICK 49 (49)
T ss_pred eEeccccCCchhHHHHHHHHHHHHHc--CCCcCCCCC
Confidence 457885 999999999999754 456899995
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=7.1e-06 Score=75.87 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=38.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
|+.+.|+||........ ++ .+.+-+|||.||..||+..+.. ....||+|+..+....
T Consensus 1 md~~~CP~Ck~~~y~np------------~~-kl~i~~CGH~~C~sCv~~l~~~---~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRNP------------SL-KLMVNVCGHTLCESCVDLLFVR---GSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCCcCCCCCccCc------------cc-ccccCCCCCcccHHHHHHHhcC---CCCCCCCCCCccchhh
Confidence 45678999987522211 11 1122379999999999997652 4468999998876544
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.83 E-value=8e-06 Score=78.58 Aligned_cols=50 Identities=22% Similarity=0.613 Sum_probs=39.4
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
.+.-+|+||++-+...-. -+....|.|.||..||.+|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~--------------gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTT--------------GILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCcccc--------------ceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 467899999998776421 123457999999999999976 78999998765
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.82 E-value=2.1e-06 Score=63.01 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=25.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeE--EcCCChHhhHHHHHHHHhcCCC----CC---CCCcCcccCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVA--VLVCGHVYHADCLEQRTSAEDI----RD---PPCPLCLGSLMQV 221 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vva--vL~CGHvFH~~CLe~wl~~~~~----~~---~sCPiCr~~l~~~ 221 (228)
...|+||...+.+.. +.+.+. --.|+..||..||.+|+..... .. ..||.|+..+..+
T Consensus 2 ~~~C~IC~~~~~~~~------------~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDG------------EIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----------------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCC------------CcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 347999998755221 111111 1379999999999999863211 12 3599999988654
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.67 E-value=1.9e-05 Score=72.84 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=40.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
...|-||-+.|..+. ..+|||.|+.-||...|. .++.||+||...-...
T Consensus 25 ~lrC~IC~~~i~ip~------------------~TtCgHtFCslCIR~hL~----~qp~CP~Cr~~~~esr 73 (391)
T COG5432 25 MLRCRICDCRISIPC------------------ETTCGHTFCSLCIRRHLG----TQPFCPVCREDPCESR 73 (391)
T ss_pred HHHhhhhhheeecce------------------ecccccchhHHHHHHHhc----CCCCCccccccHHhhh
Confidence 457999988877753 468999999999999999 7899999998765443
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.53 E-value=2.5e-05 Score=79.53 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=43.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+...|+||+..+.+.- +.+-.+|+|.||.+||+.|.. .-.+||+||..|+....
T Consensus 122 ~~~~CP~Ci~s~~DqL---------------~~~~k~c~H~FC~~Ci~sWsR----~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQL---------------EESEKHTAHYFCEECVGSWSR----CAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHh---------------hccccccccccHHHHhhhhhh----hcccCchhhhhhheeee
Confidence 4667999988776652 334568999999999999998 55899999999987664
No 41
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.49 E-value=4.9e-05 Score=72.53 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=41.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
.+..|++|.+.+..++.- .--|+|.|+||..|+..+|.+. .+.+||-||+-..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~--------------LqALpCsHIfH~rCl~e~L~~n--~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNER--------------LQALPCSHIFHLRCLQEILENN--GTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCccc--------------ccccchhHHHHHHHHHHHHHhC--CCCCCccHHHHHh
Confidence 466899999998776421 2348999999999999999744 6678999995443
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.5e-05 Score=75.89 Aligned_cols=51 Identities=24% Similarity=0.698 Sum_probs=40.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
....|++|-.-..+ +++..|||+||..|+...+.. ++-.||.|...|+.-|
T Consensus 642 ~~LkCs~Cn~R~Kd------------------~vI~kC~H~FC~~Cvq~r~et---RqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD------------------AVITKCGHVFCEECVQTRYET---RQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhh------------------HHHHhcchHHHHHHHHHHHHH---hcCCCCCCCCCCCccc
Confidence 34689999754443 245689999999999999873 6678999999998765
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00011 Score=70.32 Aligned_cols=53 Identities=26% Similarity=0.668 Sum_probs=40.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
...+|+||++.++-.- +... ..|.|||.|...||+.|+- .+....||.|..+-
T Consensus 3 ~g~tcpiclds~~~~g------------~hr~-vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAG------------NHRI-VSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecC------------ceEE-eeecccccccHHHHHHHHh--hhhhhhCcccCChh
Confidence 4568999998876542 2223 4589999999999999996 34778899998654
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00018 Score=67.55 Aligned_cols=63 Identities=22% Similarity=0.570 Sum_probs=42.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcC---CCCCCCCcCcccCcccCCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAE---DIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~~~---~~~~~sCPiCr~~l~~~~~ 223 (228)
....+|+||++...++. . . ....++| +|.|.|+..||.+|-... .+-...||+||....-...
T Consensus 159 s~~k~CGICme~i~ek~-~---------~-~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA-A---------S-ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccc-h---------h-hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 35679999999877763 0 1 1122344 599999999999997422 1124789999987655443
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00011 Score=69.15 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=42.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+..|.||++.|+.. ..+-.|+|-|+.+||..-+.. .+..||.||+.+.-+.
T Consensus 43 ~v~c~icl~llk~t-----------------mttkeClhrfc~~ci~~a~r~---gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 43 QVICPICLSLLKKT-----------------MTTKECLHRFCFDCIWKALRS---GNNECPTCRKKLVSKR 93 (381)
T ss_pred hhccHHHHHHHHhh-----------------cccHHHHHHHHHHHHHHHHHh---cCCCCchHHhhccccc
Confidence 56899999998874 245689999999999998874 5679999999887664
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.14 E-value=0.00023 Score=74.07 Aligned_cols=56 Identities=21% Similarity=0.506 Sum_probs=39.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....|+||.-.|..-+- .++.-+-..|.|-||..||.+|+... ....||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr-----------~lPskrC~TCknKFH~~CLyKWf~Ss--~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDR-----------SLPSKRCATCKNKFHTRCLYKWFASS--ARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhc-----------cCCccccchhhhhhhHHHHHHHHHhc--CCCCCCccccccc
Confidence 35679999988762110 01111334699999999999999754 6678999998764
No 47
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.12 E-value=0.0001 Score=56.03 Aligned_cols=32 Identities=34% Similarity=0.789 Sum_probs=26.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLE 198 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe 198 (228)
+...|.+|.+.|..+ ++++.||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~----------------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS----------------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc----------------eEEEeCCCeEEeccccc
Confidence 355799999998774 56889999999999985
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.99 E-value=0.00043 Score=49.18 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=30.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPL 213 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPi 213 (228)
.....|+|.+..|.++ |....|||+|-.+.|.+|+.. .....||+
T Consensus 9 ~~~~~CPiT~~~~~~P-----------------V~s~~C~H~fek~aI~~~i~~--~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP-----------------VKSKKCGHTFEKEAILQYIQR--NGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE-----------------EEESSS--EEEHHHHHHHCTT--TS-EE-SC
T ss_pred EeccCCCCcCChhhCC-----------------cCcCCCCCeecHHHHHHHHHh--cCCCCCCC
Confidence 4567899999998884 355689999999999999942 36678998
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00097 Score=61.11 Aligned_cols=64 Identities=25% Similarity=0.522 Sum_probs=45.1
Q ss_pred CCCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCC
Q 027109 145 AASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 224 (228)
Q Consensus 145 s~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~ 224 (228)
+.|.-....+|++|.+.=+-+ -...+|||+||.-||..-..-. .-.+||.|.....+-.++
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP-----------------~~~~~C~HiyCY~Ci~ts~~~~--asf~Cp~Cg~~~~~lq~s 292 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIP-----------------HVIGKCGHIYCYYCIATSRLWD--ASFTCPLCGENVEPLQAS 292 (298)
T ss_pred ccccccCCceeeccCCCCCCC-----------------eeeccccceeehhhhhhhhcch--hhcccCccCCCCcchhhc
Confidence 334445688999998763332 2346899999999999986622 337899999988765555
Q ss_pred CCC
Q 027109 225 GVQ 227 (228)
Q Consensus 225 ~~Q 227 (228)
+.|
T Consensus 293 gv~ 295 (298)
T KOG2879|consen 293 GVK 295 (298)
T ss_pred cCC
Confidence 543
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00074 Score=62.53 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..-...|.||+..-..+ ..|.|+|.|+..||+.-... ....|++||..++...
T Consensus 4 ~~~~~eC~IC~nt~n~P------------------v~l~C~HkFCyiCiKGsy~n---dk~~CavCR~pids~i 56 (324)
T KOG0824|consen 4 RTKKKECLICYNTGNCP------------------VNLYCFHKFCYICIKGSYKN---DKKTCAVCRFPIDSTI 56 (324)
T ss_pred cccCCcceeeeccCCcC------------------ccccccchhhhhhhcchhhc---CCCCCceecCCCCcch
Confidence 34566899998653332 34899999999999987651 2346999999987654
No 51
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0012 Score=62.13 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=37.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
...|.||+...++ +.+|||-|. .|..|.+.-.- +.+.|||||+.+..
T Consensus 290 gkeCVIClse~rd------------------t~vLPCRHLCLCs~Ca~~Lr~----q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD------------------TVVLPCRHLCLCSGCAKSLRY----QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc------------------eEEecchhhehhHhHHHHHHH----hhcCCCccccchHh
Confidence 5689999865443 578999998 79999998764 45679999998754
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00069 Score=64.81 Aligned_cols=48 Identities=29% Similarity=0.813 Sum_probs=39.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
....|.||...|... .+++|||.|+..||++-+. ....||+||..+..
T Consensus 83 sef~c~vc~~~l~~p------------------v~tpcghs~c~~Cl~r~ld----~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP------------------VVTPCGHSFCLECLDRSLD----QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCC------------------ccccccccccHHHHHHHhc----cCCCCccccccccc
Confidence 467899998776653 4569999999999999777 66899999988754
No 53
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.66 E-value=0.00042 Score=50.80 Aligned_cols=48 Identities=23% Similarity=0.670 Sum_probs=24.7
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
...|.+|.+.|.++ |.+..|.|+|+..||...+. ..||+|....-..|
T Consensus 7 lLrCs~C~~~l~~p-----------------v~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEP-----------------VCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS------------------B---SSS--B-TTTGGGGTT------TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCC-----------------ceeccCccHHHHHHhHHhcC------CCCCCcCChHHHHH
Confidence 45799999988874 34568999999999988665 34999988764444
No 54
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.55 E-value=0.001 Score=58.84 Aligned_cols=44 Identities=27% Similarity=0.689 Sum_probs=36.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
...|.||.++|+.+ .|..|||.|+..|...-.. ..+.|-+|-..
T Consensus 196 PF~C~iCKkdy~sp------------------vvt~CGH~FC~~Cai~~y~----kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP------------------VVTECGHSFCSLCAIRKYQ----KGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch------------------hhhhcchhHHHHHHHHHhc----cCCcceecchh
Confidence 34899999998875 2458999999999998888 55899999764
No 55
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0016 Score=59.13 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=48.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCCCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSGVQ 227 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~~~Q 227 (228)
...+|+||.+.|++.-+ .+.+-+|||||..+|.++.+. .|..||+|-..+..++.-+.|
T Consensus 220 ~ryiCpvtrd~LtNt~~--------------ca~Lr~sg~Vv~~ecvEklir----~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTP--------------CAVLRPSGHVVTKECVEKLIR----KDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred cceecccchhhhcCccc--------------eEEeccCCcEeeHHHHHHhcc----ccccccCCCCcCcccceEeee
Confidence 46789999998887632 345559999999999999998 789999999998887765444
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0022 Score=57.64 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=40.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc----CCCCCCCCcCcccCcccC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA----EDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~----~~~~~~sCPiCr~~l~~~ 221 (228)
-.|.+|.-.|.+++. ..|.|=|+||..||.+|-.. ..-....||-|.+++-+-
T Consensus 51 pNC~LC~t~La~gdt----------------~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDT----------------TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCceeCCccccCcc----------------eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 369999888877752 34899999999999999642 222457899999987654
No 57
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.0018 Score=59.30 Aligned_cols=48 Identities=31% Similarity=0.717 Sum_probs=39.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
....|+||.+.+..... .+.+++|||..|..|++.+.. ...+||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~--------------~~~~~~CgH~~h~~cf~e~~~----~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFE--------------DAGVLKCGHYMHSRCFEEMIC----EGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccc--------------cCCccCcccchHHHHHHHHhc----cCCCCCcccc
Confidence 34559999988877532 457799999999999999987 3389999988
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.32 E-value=0.0013 Score=62.54 Aligned_cols=51 Identities=35% Similarity=0.769 Sum_probs=41.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
++..|+||...+.++- -...|||.|+..|+..|+. .++.||.|+..+...+
T Consensus 20 ~~l~C~~C~~vl~~p~-----------------~~~~cgh~fC~~C~~~~~~----~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPV-----------------QTTTCGHRFCAGCLLESLS----NHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccccCCC-----------------CCCCCCCcccccccchhhc----cCcCCcccccccchhh
Confidence 5678999999888752 1258999999999999998 4789999988776554
No 59
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0022 Score=45.97 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=31.7
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHH-HHHHhcCCCCCCCCcCcccCccc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCL-EQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CL-e~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+.|.||.+.--+. .+..|||+ .+.+|- +.|.. .+..|||||..+..
T Consensus 8 dECTICye~pvds------------------VlYtCGHMCmCy~Cg~rl~~~----~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS------------------VLYTCGHMCMCYACGLRLKKA----LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH------------------HHHHcchHHhHHHHHHHHHHc----cCCcCcchhhHHHH
Confidence 6799998642221 12479998 678885 45554 56789999987643
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.90 E-value=0.0064 Score=54.58 Aligned_cols=55 Identities=20% Similarity=0.481 Sum_probs=43.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
.....|+|....|.... ..|++.+|||||-..+|++.- .+..||+|-..|...|.
T Consensus 111 ~~~~~CPvt~~~~~~~~--------------~fv~l~~cG~V~s~~alke~k-----~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKH--------------KFVYLRPCGCVFSEKALKELK-----KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCce--------------eEEEEcCCCCEeeHHHHHhhc-----ccccccccCCccccCCE
Confidence 35678999998885432 256888999999999999983 23569999999987654
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.87 E-value=0.0032 Score=58.57 Aligned_cols=58 Identities=24% Similarity=0.479 Sum_probs=42.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc-------------------CCCCCCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-------------------EDIRDPPC 211 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~-------------------~~~~~~sC 211 (228)
....|.||+--|.++. .+.+.+|-|.||..||..+|.. ++.....|
T Consensus 114 p~gqCvICLygfa~~~---------------~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSP---------------AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred CCCceEEEEEeecCCC---------------ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 4567999987777764 3466899999999999877531 12234569
Q ss_pred cCcccCcccCCC
Q 027109 212 PLCLGSLMQVES 223 (228)
Q Consensus 212 PiCr~~l~~~~~ 223 (228)
||||..+..+..
T Consensus 179 pVcre~i~~e~~ 190 (368)
T KOG4445|consen 179 PVCRERIKIEEN 190 (368)
T ss_pred hHhhhhcccccc
Confidence 999998877664
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.75 E-value=0.0034 Score=58.62 Aligned_cols=51 Identities=20% Similarity=0.500 Sum_probs=42.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..++|.+|..+|-+.. .+.-|=|.||..||..+|.+ ...||+|.-.+....
T Consensus 14 ~~itC~LC~GYliDAT-----------------TI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT-----------------TITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecch-----------------hHHHHHHHHHHHHHHHHHHH----hccCCccceeccCcc
Confidence 5789999999988753 45689999999999999993 578999998776654
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.70 E-value=0.0092 Score=59.31 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=41.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh-cCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS-AEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~-~~~~~~~sCPiCr~~l~~~~ 222 (228)
.....|++|-++-++. .+..|.|+||..||.++.. ..+..+.+||+|-..+..+.
T Consensus 534 k~~~~C~lc~d~aed~------------------i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY------------------IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhh------------------HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 3577899998875553 2358999999999998864 22346689999988876553
No 64
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.0056 Score=63.40 Aligned_cols=34 Identities=35% Similarity=0.742 Sum_probs=28.3
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 201 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl 201 (228)
...|.+|...|-.+. .-+.+|||.||.+||++-+
T Consensus 817 ~d~C~~C~~~ll~~p----------------F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKP----------------FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcCc----------------ceeeeccchHHHHHHHHHH
Confidence 567999999887763 2567999999999999875
No 65
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.63 E-value=0.0054 Score=59.11 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=38.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..+.|-||-+. ++ .|.+-+|||..+..||-.|-... ....||.||-++.-.+
T Consensus 368 TFeLCKICaen--dK----------------dvkIEPCGHLlCt~CLa~WQ~sd--~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 368 TFELCKICAEN--DK----------------DVKIEPCGHLLCTSCLAAWQDSD--EGQTCPFCRCEIKGTE 419 (563)
T ss_pred hHHHHHHhhcc--CC----------------CcccccccchHHHHHHHhhcccC--CCCCCCceeeEecccc
Confidence 45689999653 22 24667999999999999996532 3578999998875443
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.60 E-value=0.014 Score=49.68 Aligned_cols=53 Identities=21% Similarity=0.550 Sum_probs=37.4
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCCh-----HhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGH-----VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGH-----vFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+.....|=||.+.-. .+ .-||.- .-|.+||++|+... +...|++|...|..+.
T Consensus 5 s~~~~~CRIC~~~~~---~~----------------~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 5 SLMDKCCWICKDEYD---VV----------------TNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCCeeEecCCCCC---Cc----------------cCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCeEEEEE
Confidence 346678999976521 11 124543 45999999999854 6788999999886653
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.51 E-value=0.0087 Score=65.12 Aligned_cols=55 Identities=20% Similarity=0.470 Sum_probs=35.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC------CCCCCCCcCcccCcc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE------DIRDPPCPLCLGSLM 219 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~------~~~~~sCPiCr~~l~ 219 (228)
..++.|.||.-.--.. .....|.|+|+||.+|....|+.. .-.=.+||||...+.
T Consensus 3484 D~DDmCmICFTE~L~A---------------AP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSA---------------APAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCC---------------CcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3567899996431111 123458999999999988766511 112268999998763
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.19 E-value=0.015 Score=55.37 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=40.1
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.+.+.+.|-||-+.++.. +++||+|-.+--|...--..- ....||+||.++..+
T Consensus 57 tDEen~~C~ICA~~~TYs------------------~~~PC~H~~CH~Ca~RlRALY--~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTYS------------------ARYPCGHQICHACAVRLRALY--MQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceEE------------------EeccCCchHHHHHHHHHHHHH--hccCCCccccccceE
Confidence 355788999998766553 679999999999987652211 346799999987643
No 69
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.012 Score=60.88 Aligned_cols=44 Identities=39% Similarity=0.879 Sum_probs=33.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
....|.+|.-.|+-+ .|. ..|||.||.+|++ . +..-||-|+-++
T Consensus 839 q~skCs~C~~~LdlP----------------~Vh-F~CgHsyHqhC~e---~----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP----------------FVH-FLCGHSYHQHCLE---D----KEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccc----------------eee-eecccHHHHHhhc---c----CcccCCccchhh
Confidence 346899997766654 344 4699999999999 3 456799998743
No 70
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.0066 Score=56.19 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=37.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
....|.||.++|..+ .|..|||.|+..|...-+. ....|+||.+..
T Consensus 240 ~Pf~c~icr~~f~~p------------------Vvt~c~h~fc~~ca~~~~q----k~~~c~vC~~~t 285 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP------------------VVTKCGHYFCEVCALKPYQ----KGEKCYVCSQQT 285 (313)
T ss_pred CCccccccccccccc------------------hhhcCCceeehhhhccccc----cCCcceeccccc
Confidence 345699999998875 3468999999999998887 558899997654
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.019 Score=51.67 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=40.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
...|.||-++|...+. ..+.++|.|||.++..|+..-+.. ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~------------~~~p~~l~c~h~~c~~c~~~l~~~---~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDG------------DHIPRVLKCGHTICQNCASKLLGN---SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCc------------ccCCcccccCceehHhHHHHHhcC---ceeeccCCCCcc
Confidence 3479999999876532 225578999999999999988762 456799999985
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.016 Score=54.78 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=31.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....|.||.+...+ +..++|||+-+ |..-... .+.||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~------------------~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS------------------AVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc------------------eeeecCCcEEE--chHHHhh-----CCCCchhHHHHH
Confidence 56789999865333 35689999966 7666543 366999998764
No 73
>PHA02862 5L protein; Provisional
Probab=94.56 E-value=0.032 Score=47.09 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 191 VYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 191 vFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.-|.+||.+|+.. +++..|++|+.+|..+
T Consensus 27 ~VHq~CL~~WIn~--S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 27 VVHIKCMQLWINY--SKKKECNLCKTKYNIK 55 (156)
T ss_pred hHHHHHHHHHHhc--CCCcCccCCCCeEEEE
Confidence 5699999999964 3677899999988654
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.44 E-value=0.026 Score=52.81 Aligned_cols=44 Identities=30% Similarity=0.728 Sum_probs=36.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
..|++|..+|.+.. .+--|||.|+.+||+.-|.. .+..||.|-.
T Consensus 275 LkCplc~~Llrnp~-----------------kT~cC~~~fc~eci~~al~d---sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM-----------------KTPCCGHTFCDECIGTALLD---SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc-----------------cCccccchHHHHHHhhhhhh---ccccCCCccc
Confidence 68999999988853 33469999999999998763 6789999955
No 75
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.32 E-value=0.026 Score=58.49 Aligned_cols=55 Identities=24% Similarity=0.565 Sum_probs=41.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC---CCCCCcCcccCc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI---RDPPCPLCLGSL 218 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~---~~~sCPiCr~~l 218 (228)
...+.|.||.+.+....+ +.+--.|=||||..||..|-...++ ....||-|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~--------------~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAP--------------VWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCC--------------ceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 357899999999887653 3344569999999999999754333 347799998544
No 76
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.21 E-value=0.04 Score=45.73 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=26.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC------hHhhHHHHHHHHh
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG------HVYHADCLEQRTS 202 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CG------HvFH~~CLe~wl~ 202 (228)
...|.||.+.+.+.. .+|++ .|| |+||.+|+++|..
T Consensus 26 ~~EC~IC~~~I~~~~--------------GvV~v-t~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNND--------------GVVYV-TDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCC--------------CEEEE-ecCCeehHHHHHHHHHHHHHHh
Confidence 557999999887711 15554 454 8999999999953
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.033 Score=53.12 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=44.0
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCCC
Q 027109 146 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSG 225 (228)
Q Consensus 146 ~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~~ 225 (228)
.-|+.++..|+||... +. .+...||+|--+..||.+.+. +...|-.|+.++..+..++
T Consensus 416 ~lp~sEd~lCpICyA~-----pi-------------~Avf~PC~H~SC~~CI~qHlm----N~k~CFfCktTv~~~~ld~ 473 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAG-----PI-------------NAVFAPCSHRSCYGCITQHLM----NCKRCFFCKTTVIDVILDK 473 (489)
T ss_pred CCCCcccccCcceecc-----cc-------------hhhccCCCCchHHHHHHHHHh----cCCeeeEecceeeehhccc
Confidence 3466788999999632 11 123459999999999999998 6678999999988655444
Q ss_pred C
Q 027109 226 V 226 (228)
Q Consensus 226 ~ 226 (228)
+
T Consensus 474 ~ 474 (489)
T KOG4692|consen 474 E 474 (489)
T ss_pred c
Confidence 3
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.05 E-value=0.018 Score=40.94 Aligned_cols=33 Identities=27% Similarity=0.652 Sum_probs=26.8
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 184 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 184 avL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+++|||+-...|.+-+-- +.||+|-+.+...+
T Consensus 21 ~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERY------NGCPFCGTPFEFDD 53 (55)
T ss_pred ccccccceeeccccChhhc------cCCCCCCCcccCCC
Confidence 5789999999999877633 57999999887655
No 79
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.67 E-value=0.015 Score=39.58 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=16.2
Q ss_pred HhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 191 VYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 191 vFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
.-|..||++|+... ....|++|
T Consensus 26 ~vH~~CL~~W~~~~--~~~~C~~C 47 (47)
T PF12906_consen 26 YVHRSCLERWIRES--GNRKCEIC 47 (47)
T ss_dssp SEECCHHHHHHHHH--T-SB-TTT
T ss_pred hhHHHHHHHHHHhc--CCCcCCCC
Confidence 45999999999753 55679988
No 80
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.0063 Score=58.31 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=40.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
....|.||.+.|.+.= .....+.|||.||.+||.+|+.. .-.||.|+.++..
T Consensus 195 lv~sl~I~~~slK~~y--------------~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNY--------------DKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHH--------------HHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhh
Confidence 4567999999988641 01234689999999999999983 4569999998764
No 81
>PHA03096 p28-like protein; Provisional
Probab=92.35 E-value=0.1 Score=47.97 Aligned_cols=55 Identities=16% Similarity=0.337 Sum_probs=35.5
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCC--CCCCCcCcccCc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDI--RDPPCPLCLGSL 218 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~~~~~--~~~sCPiCr~~l 218 (228)
..|+||++...++... +. ...+| .|.|+|+..|+..|...... .-+.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~----------~~-~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYII----------KK-YYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccc----------cc-cccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 6899999987765310 00 12333 69999999999999754322 224556665544
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.022 Score=52.98 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=30.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....|.||++.-.+- ..|.|||+ -+..|-..+ ..|||||+.+.
T Consensus 299 ~~~LC~ICmDaP~DC------------------vfLeCGHmVtCt~CGkrm--------~eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDC------------------VFLECGHMVTCTKCGKRM--------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCcce------------------EEeecCcEEeehhhcccc--------ccCchHHHHHH
Confidence 367899998753331 45899996 466665544 36999998754
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.15 Score=49.40 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=34.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh----cCCCCCCCCcCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS----AEDIRDPPCPLCL 215 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~----~~~~~~~sCPiCr 215 (228)
....|.||.+...... -...|+|+|||+..|+..++. +...+...||-|.
T Consensus 183 slf~C~ICf~e~~G~~---------------c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQH---------------CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcc---------------eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3567999987654421 235689999999999999964 2333446677553
No 84
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.34 E-value=0.16 Score=43.36 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=11.2
Q ss_pred CCCCcCcccCcccC
Q 027109 208 DPPCPLCLGSLMQV 221 (228)
Q Consensus 208 ~~sCPiCr~~l~~~ 221 (228)
+..||+||..+...
T Consensus 80 ~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 80 ELACPLCRGEVKGW 93 (162)
T ss_pred cccCccccCceece
Confidence 57899999987644
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.98 E-value=0.11 Score=52.96 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=35.8
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
..|.||.+ + +. .-+..|||.|+.+|+...+... ....||+|+..+..+
T Consensus 455 ~~c~ic~~-~-~~-----------------~~it~c~h~~c~~c~~~~i~~~--~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L-DS-----------------FFITRCGHDFCVECLKKSIQQS--ENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c-cc-----------------ceeecccchHHHHHHHhccccc--cCCCCcHHHHHHHHH
Confidence 68999998 1 21 1345899999999999988754 333799999876543
No 86
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.95 E-value=0.11 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=20.1
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcC
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPL 213 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPi 213 (228)
+.||||.|..|...|+..+ -.||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~g----d~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTG----DVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcC----CcCCC
Confidence 6799999999999999943 47773
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.15 Score=44.65 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=28.2
Q ss_pred EcCCChHhhHHHHHHHHhcC----CCCC---CCCcCcccCcccCC
Q 027109 185 VLVCGHVYHADCLEQRTSAE----DIRD---PPCPLCLGSLMQVE 222 (228)
Q Consensus 185 vL~CGHvFH~~CLe~wl~~~----~~~~---~sCPiCr~~l~~~~ 222 (228)
-..||--||.-||-.||... ++.+ ..||.|...+..|-
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 35799999999999998522 1122 57999998876654
No 88
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.47 E-value=0.31 Score=33.80 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=22.4
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 155 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 155 C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
|++|.+.+..... ...-=+||+..+..|....+.. .+..||-||+.|.
T Consensus 1 cp~C~e~~d~~d~--------------~~~PC~Cgf~IC~~C~~~i~~~---~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDK--------------DFYPCECGFQICRFCYHDILEN---EGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCT--------------T--SSTTS----HHHHHHHTTS---S-SB-TTT--B--
T ss_pred CCCcccccccCCC--------------ccccCcCCCcHHHHHHHHHHhc---cCCCCCCCCCCCC
Confidence 7889888854431 1112368999999998888752 4678999998863
No 89
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.38 Score=44.60 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=27.7
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 184 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 184 avL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
.+-+|||..+..|.+..+.. +...||.|+..+-.
T Consensus 19 ~in~C~H~lCEsCvd~iF~~---g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 19 MINECGHRLCESCVDRIFSL---GPAQCPECMVILRK 52 (300)
T ss_pred eeccccchHHHHHHHHHHhc---CCCCCCcccchhhh
Confidence 44599999999999999873 56789999876643
No 90
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=0.26 Score=46.54 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=37.0
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
+.+...|+||++...++. ++..-|-|||..|+.+++. +...||+=....
T Consensus 297 ~~~~~~CpvClk~r~Npt-----------------vl~vSGyVfCY~Ci~~Yv~----~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT-----------------VLEVSGYVFCYPCIFSYVV----NYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCc-----------------eEEecceEEeHHHHHHHHH----hcCCCCccCCcc
Confidence 346778999988755543 3345799999999999998 667899855443
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.23 E-value=0.19 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.815 Sum_probs=15.5
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
.|+=.+|..|++.++... .++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~--~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHR--SNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT---SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcC--CCCCCcCC
Confidence 466679999999998733 33479988
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.32 E-value=0.31 Score=52.85 Aligned_cols=46 Identities=30% Similarity=0.673 Sum_probs=38.1
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
...|.||.+.+..-. .+..|||.|+..|++.|+. ....||+|....
T Consensus 1153 ~~~c~ic~dil~~~~-----------------~I~~cgh~~c~~c~~~~l~----~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG-----------------GIAGCGHEPCCRCDELWLY----ASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcC-----------------CeeeechhHhhhHHHHHHH----HhccCcchhhhh
Confidence 448999999988643 4567999999999999998 678899998543
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=0.39 Score=48.99 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=33.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
+...|.||...|..... ....|-|||+.+.+|++.-.. .+|| |..+
T Consensus 10 ~~l~c~ic~n~f~~~~~--------------~Pvsl~cghtic~~c~~~lyn------~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRL--------------EPVSLQCGHTICGHCVQLLYN------ASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhc--------------CcccccccchHHHHHHHhHhh------ccCC-CCcc
Confidence 56789999888876532 124478999999999998644 6798 6543
No 94
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=0.22 Score=43.09 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=24.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHA 194 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~ 194 (228)
+...|.||+++|...+ .++.|+|=-+||.
T Consensus 176 dkGECvICLEdL~~Gd---------------tIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGD---------------TIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCC---------------ceeccceEEEeec
Confidence 5678999999999876 5688999999995
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.44 E-value=0.46 Score=44.80 Aligned_cols=31 Identities=29% Similarity=0.772 Sum_probs=23.5
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 184 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 184 avL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+..+|.||||.+|...- .+..||.|.-.+..
T Consensus 105 RmIPCkHvFCl~CAr~~------~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSD------SDKICPLCDDRVQR 135 (389)
T ss_pred cccccchhhhhhhhhcC------ccccCcCcccHHHH
Confidence 56799999999997643 24579999766543
No 96
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.09 E-value=0.75 Score=42.22 Aligned_cols=53 Identities=17% Similarity=0.425 Sum_probs=38.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
...+|+|=.-.+... ...++...|||||-..-|.+.-. -.|++|...|...+.
T Consensus 110 a~fiCPvtgleMng~--------------~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGK--------------YRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecce--------------EEEEEEeccceeccHHHHHHhhh------ccccccCCcccccCe
Confidence 345687765443332 33557779999999999998854 579999999988775
No 98
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.69 E-value=0.43 Score=49.47 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=33.3
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
...|..|.++..... ...-.+.|+.|||+||..|+..-... + .|-+|..
T Consensus 784 e~rc~~c~~~~l~~~-----------~~~~~~~v~~c~h~yhk~c~~~~~~~----~-~~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSG-----------AAFDSVVVFHCGHMYHKECLMMESLR----N-ACNIESG 832 (846)
T ss_pred hhhhhhhcccccccC-----------cccceeeEEEccchhhhcccccHHHh----c-ccChhhc
Confidence 347999987654331 11335788999999999999887662 2 2666654
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.44 E-value=1 Score=43.15 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=37.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+++.|++|.+++.-.+- ++ ---+||-..+..|-...-. .-+..||-||+.|..+..
T Consensus 13 eed~cplcie~mditdk-----nf---------~pc~cgy~ic~fc~~~irq---~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDK-----NF---------FPCPCGYQICQFCYNNIRQ---NLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccC-----Cc---------ccCCcccHHHHHHHHHHHh---hccCCChHhhhhccccce
Confidence 45569999998764331 01 1247898888888665533 245789999999877653
No 100
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.82 E-value=2.3 Score=35.59 Aligned_cols=60 Identities=22% Similarity=0.442 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSG 225 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~~ 225 (228)
....|-||++.-.+... +.++| =||-..+-.|-.+.|.-.. -.|.||+|++.+.......
T Consensus 79 ~lYeCnIC~etS~ee~F-------LKPne-------CCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss~~~~ 138 (140)
T PF05290_consen 79 KLYECNICKETSAEERF-------LKPNE-------CCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSSSSAS 138 (140)
T ss_pred CceeccCcccccchhhc-------CCccc-------ccchHHHHHHHHHHHHHcc-cCCCCCccccccccccccc
Confidence 67889999987666432 22322 3898888888777555332 5689999999987655433
No 101
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=0.73 Score=43.99 Aligned_cols=56 Identities=30% Similarity=0.515 Sum_probs=36.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCc--CcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCP--LCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~--~~~~~sCP--iCr~~l~~ 220 (228)
...+|+||...+.... ... .++.|+|.|+.+|+.+.+... ....+.|| -|...+..
T Consensus 145 ~~~~C~iC~~e~~~~~-------------~~f-~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAE-------------DMF-SVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHh-------------hhH-HHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 4678999994433221 011 267899999999999997622 33557776 45555443
No 102
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.15 E-value=0.64 Score=46.83 Aligned_cols=32 Identities=28% Similarity=0.718 Sum_probs=22.7
Q ss_pred CcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 179 EQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 179 e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
.-.+..-..||++||..|+..- .+-||.|-+.
T Consensus 528 ~~~~~rC~~C~avfH~~C~~r~-------s~~CPrC~R~ 559 (580)
T KOG1829|consen 528 TRNTRRCSTCLAVFHKKCLRRK-------SPCCPRCERR 559 (580)
T ss_pred cccceeHHHHHHHHHHHHHhcc-------CCCCCchHHH
Confidence 3334566789999999997653 2339999654
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.81 E-value=1.5 Score=46.05 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=38.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCCh-----HhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGH-----VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGH-----vFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.++.+|-||.-.=.+.+++. -||.. ..|.+||.+|+.- +.+..|-+|..++.-++
T Consensus 10 ~d~~~CRICr~e~~~d~pLf----------------hPCKC~GSIkYiH~eCL~eW~~~--s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF----------------HPCKCSGSIKYIHRECLMEWMEC--SGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCc----------------ccccccchhHHHHHHHHHHHHhc--CCCcceeeecceeeeee
Confidence 46789999986654444433 35543 3699999999973 36677999998876554
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=1 Score=43.40 Aligned_cols=53 Identities=21% Similarity=0.526 Sum_probs=36.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
-+|+|=.+.=.+.+| + ..|.||||--.+-|.+....+. ...-||.|=..-...
T Consensus 335 F~CPVlKeqtsdeNP--------------P-m~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e~~~~ 387 (394)
T KOG2817|consen 335 FICPVLKEQTSDENP--------------P-MMLICGHVISKDALNRLSKNGS-QSFKCPYCPVEQLAS 387 (394)
T ss_pred eecccchhhccCCCC--------------C-eeeeccceecHHHHHHHhhCCC-eeeeCCCCCcccCHH
Confidence 368886554444332 2 4589999999999999877442 247799996554433
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.55 E-value=1.5 Score=40.36 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=39.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCC-----ChHhhHHHHHHHHhcCCCC----CCCCcCcccCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC-----GHVYHADCLEQRTSAEDIR----DPPCPLCLGSLMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~C-----GHvFH~~CLe~wl~~~~~~----~~sCPiCr~~l~~ 220 (228)
+.+..|=||...=++.- . ..-|-|| .|--|..||..|+.+++.. .-.||.|..+|..
T Consensus 18 e~eR~CWiCF~TdeDn~-------------~-a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNR-------------L-AAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccc-------------h-hhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 35668999986422211 0 1134567 3668999999999876553 3579999998765
Q ss_pred C
Q 027109 221 V 221 (228)
Q Consensus 221 ~ 221 (228)
.
T Consensus 84 v 84 (293)
T KOG3053|consen 84 V 84 (293)
T ss_pred e
Confidence 4
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.88 E-value=1.7 Score=45.03 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=16.2
Q ss_pred cCCChHhhHHHHHHHHhc
Q 027109 186 LVCGHVYHADCLEQRTSA 203 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~ 203 (228)
-.|||.-|..||.+|+.+
T Consensus 797 ~~C~H~gH~sh~~sw~~~ 814 (839)
T KOG0269|consen 797 QVCGHGGHDSHLKSWFFK 814 (839)
T ss_pred ccccccccHHHHHHHHhc
Confidence 369999999999999984
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=74.33 E-value=1 Score=31.43 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=22.2
Q ss_pred cCC-ChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 186 LVC-GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 186 L~C-GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..| .|..+..||..++. ....||||...+..+.
T Consensus 16 i~C~dHYLCl~CLt~ml~----~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLS----RSDRCPICGKPLPTKI 49 (50)
T ss_dssp EE-SS-EEEHHHHHHT-S----SSSEETTTTEE----S
T ss_pred eeecchhHHHHHHHHHhc----cccCCCcccCcCcccc
Confidence 467 68889999999998 5678999999987653
No 108
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=72.78 E-value=1.2 Score=43.18 Aligned_cols=38 Identities=32% Similarity=0.484 Sum_probs=0.0
Q ss_pred CcceeEEcCCChHhhHHHHHHHHhcCC--CCCCCCcCcccCcc
Q 027109 179 EQHAVAVLVCGHVYHADCLEQRTSAED--IRDPPCPLCLGSLM 219 (228)
Q Consensus 179 e~~vvavL~CGHvFH~~CLe~wl~~~~--~~~~sCPiCr~~l~ 219 (228)
+......|.||||+..+ .|-...+ ...-.||+|+..=.
T Consensus 300 ~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 300 ERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp -------------------------------------------
T ss_pred ccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 33344678999998754 6754332 24678999997633
No 109
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=72.34 E-value=2.4 Score=41.93 Aligned_cols=35 Identities=20% Similarity=0.528 Sum_probs=29.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA 203 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~ 203 (228)
+...|+||...|+++ .+|+|||..+..|....+-.
T Consensus 3 eelkc~vc~~f~~ep------------------iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP------------------IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc------------------eEeecccHHHHHHHHhhccc
Confidence 466899999998885 46899999999999987643
No 110
>PLN02189 cellulose synthase
Probab=72.05 E-value=3.7 Score=44.07 Aligned_cols=57 Identities=25% Similarity=0.441 Sum_probs=40.7
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....++|.||.+.+.... .++ .-||.-.||---|..|. ++..++ .+..||-|++.|.
T Consensus 31 ~~~~~~C~iCgd~vg~~~----------~g~-~fvaC~~C~fpvCr~Cy-eyer~e--g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTV----------DGD-LFVACNECGFPVCRPCY-EYERRE--GTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCC----------CCC-EEEeeccCCCccccchh-hhhhhc--CCccCcccCCchh
Confidence 345679999998865431 122 34677789998999999 454333 5678999999987
No 111
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.74 E-value=3.3 Score=39.51 Aligned_cols=36 Identities=17% Similarity=0.561 Sum_probs=26.4
Q ss_pred CCChHhhHHHHHHHHhcCCC---------CCCCCcCcccCcccCC
Q 027109 187 VCGHVYHADCLEQRTSAEDI---------RDPPCPLCLGSLMQVE 222 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~---------~~~sCPiCr~~l~~~~ 222 (228)
-|--+.+.+|+-+|+...+. .+-+||+||..+-..|
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 36667799999999853321 3478999999886655
No 112
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=69.78 E-value=1.5 Score=42.47 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred ccccccccchhhhcccccCCCCCC-CCCCcceeEEcCCChHhhHHHHHHHHh-----cCCCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTI-PSGEQHAVAVLVCGHVYHADCLEQRTS-----AEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~-~~~e~~vvavL~CGHvFH~~CLe~wl~-----~~~~~~~sCPiCr~~l~~ 220 (228)
..+|++|...=..-.+|.|....+ -....+.-+.-||||+-=.....-|-. -....+..||.|...|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999987643333444333222 122334456679999999999999942 123356899999988764
No 113
>PLN02436 cellulose synthase A
Probab=69.36 E-value=4.6 Score=43.55 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=40.5
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....++|.||.+.+.... .+| .-||.-.||---|..|. ++..++ .+..||-|++.|.
T Consensus 33 ~~~~~iCqICGD~Vg~t~----------dGe-~FVACn~C~fpvCr~Cy-eyer~e--g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTV----------DGE-PFVACNECAFPVCRPCY-EYERRE--GNQACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCcCC----------CCC-EEEeeccCCCccccchh-hhhhhc--CCccCcccCCchh
Confidence 345679999998865431 222 24677789888999999 444333 5678999999987
No 114
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=69.31 E-value=3.1 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.625 Sum_probs=24.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
...|++|.+.|.... | -.+|.+.--.. .+...||||...+
T Consensus 2 ~f~CP~C~~~~~~~~-------------------L------~~H~~~~H~~~--~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-------------------L------VEHCEDEHRSE--SKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH-------------------H------HHHHHhHCcCC--CCCccCCCchhhh
Confidence 357999998666543 2 23444444332 2467899998653
No 115
>PLN02400 cellulose synthase
Probab=67.43 E-value=6.3 Score=42.55 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=40.8
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....++|.||.+++.... .+| .-||.-.|+---|..|. ++-.++ .+..||.|++.|.
T Consensus 33 ~~~gqiCqICGD~VG~t~----------dGe-~FVAC~eCaFPVCRpCY-EYERke--Gnq~CPQCkTrYk 89 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTE----------TGD-VFVACNECAFPVCRPCY-EYERKD--GTQCCPQCKTRYR 89 (1085)
T ss_pred ccCCceeeecccccCcCC----------CCC-EEEEEccCCCccccchh-heeccc--CCccCcccCCccc
Confidence 346779999998865431 222 34677888888999999 453332 5678999999987
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.40 E-value=3.6 Score=36.96 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=35.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
...+|-+|.+.+-.. ++-..||=.||..|+..++. ..+.||-|.--|
T Consensus 180 nlk~Cn~Ch~LvIqg-----------------~rCg~c~i~~h~~c~qty~q----~~~~cphc~d~w 226 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG-----------------IRCGSCNIQYHRGCIQTYLQ----RRDICPHCGDLW 226 (235)
T ss_pred HHHHHhHhHHHhhee-----------------eccCcccchhhhHHHHHHhc----ccCcCCchhccc
Confidence 356899998775543 34467888899999999998 468899995443
No 117
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=67.00 E-value=4.8 Score=38.33 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=44.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCC-CcceeEEcCCChHhhHHHHHHHHh-----cCCCCCCCCcCcccCcccCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSG-EQHAVAVLVCGHVYHADCLEQRTS-----AEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~-e~~vvavL~CGHvFH~~CLe~wl~-----~~~~~~~sCPiCr~~l~~~~ 222 (228)
...|++|...=..-..|.|...-+.-+ ..+.-+.-+|||+--..=..-|-. -....+..||.|-..+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 568999986543333455433322111 122335679999988888888843 12347799999988775443
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=66.65 E-value=3.3 Score=36.00 Aligned_cols=27 Identities=30% Similarity=0.807 Sum_probs=21.2
Q ss_pred ceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 181 HAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 181 ~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
.++.=..|+-+||..|..+ ..||-|..
T Consensus 171 ~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 171 TTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 5566678999999999873 24999964
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.38 E-value=4.2 Score=38.29 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=27.3
Q ss_pred CCChHhhHHHHHHHHhcCCC---------CCCCCcCcccCcccCCC
Q 027109 187 VCGHVYHADCLEQRTSAEDI---------RDPPCPLCLGSLMQVES 223 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~---------~~~sCPiCr~~l~~~~~ 223 (228)
-|.-+.+.+||.+|+...+. ..-+||+||+.+-..|.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 47788899999999752211 34789999998866553
No 120
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.98 E-value=6.2 Score=42.57 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=40.6
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....++|-||.+.+.... .++ .-||.-.||-=-|..|. ++-.++ .+..||.|++.|.
T Consensus 14 ~~~~qiCqICGD~vg~~~----------~Ge-~FVAC~eC~FPVCrpCY-EYEr~e--G~q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTV----------DGE-PFVACDVCAFPVCRPCY-EYERKD--GNQSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCcCC----------CCC-EEEEeccCCCccccchh-hhhhhc--CCccCCccCCchh
Confidence 345679999998765431 223 24677788888999999 454433 5678999999987
No 121
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.50 E-value=2.3 Score=37.48 Aligned_cols=29 Identities=31% Similarity=0.654 Sum_probs=21.2
Q ss_pred eeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 182 AVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 182 vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
.|.+|||.|+ ++..|-+. + ..||||+...
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~ 199 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSPK 199 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcChh
Confidence 4678999886 67777665 3 3599998653
No 122
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.19 E-value=4.9 Score=28.55 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=26.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQR 200 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~w 200 (228)
....|.+|.+.|+.++- +|.--.||=.||.+|-+.-
T Consensus 4 ~~~~C~~Cg~~~~~~dD--------------iVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDD--------------IVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCCCC--------------EEECCCCCCcccHHHHhhC
Confidence 35579999999975431 3344579999999996543
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=65.14 E-value=0.46 Score=31.70 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=23.3
Q ss_pred EEcCCChHhhHHHHHHHHh--cCCCCCCCCcCccc
Q 027109 184 AVLVCGHVYHADCLEQRTS--AEDIRDPPCPLCLG 216 (228)
Q Consensus 184 avL~CGHvFH~~CLe~wl~--~~~~~~~sCPiCr~ 216 (228)
.=-.|+-.||..|+..-.. ........||.|+.
T Consensus 16 ~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 16 QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred EcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3347999999999987654 22223688998864
No 124
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=62.57 E-value=2.2 Score=29.29 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 195 DCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 195 ~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.-+.+++.+....+..||+|.+.|+...
T Consensus 7 ~~~~k~i~~l~~~~~~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 7 EELKKYIEELKEAKGCCPLCGRPLDEEH 34 (54)
T ss_dssp HHHHHHHHHHTT-SEE-TTT--EE-HHH
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCCHHH
Confidence 3456666544445568999999987654
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=62.09 E-value=7 Score=26.78 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCcCccc
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLG 216 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~-~~~~~sCPiCr~ 216 (228)
.|+|....+.. .++...|.|+-+.+ |+.|+... ......||+|.+
T Consensus 4 ~CPls~~~i~~-----------------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRI-----------------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SS-----------------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEe-----------------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 57777665544 34667899884332 45555321 124478999976
No 126
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=60.06 E-value=12 Score=26.94 Aligned_cols=48 Identities=31% Similarity=0.626 Sum_probs=32.8
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.|-.|-++|...+. ...+-...| .|+.+|.+..|. ..||-|...|...
T Consensus 7 nCE~C~~dLp~~s~------------~A~ICSfEC--TFC~~C~e~~l~------~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSP------------EAYICSFEC--TFCADCAETMLN------GVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCC------------cceEEeEeC--cccHHHHHHHhc------CcCcCCCCccccC
Confidence 68888777765532 112222333 699999999987 5799999887543
No 127
>PLN02195 cellulose synthase A
Probab=59.66 E-value=8.9 Score=41.04 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=40.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
..++|.||.+.+.... .++ .-||.-.||---|..|. ++-.++ .+..||.|++.|..
T Consensus 5 ~~~~c~~cgd~~~~~~----------~g~-~fvaC~eC~~pvCrpCy-eyer~e--g~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDS----------NGE-AFVACHECSYPLCKACL-EYEIKE--GRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCC----------CCC-eEEEeccCCCccccchh-hhhhhc--CCccCCccCCcccc
Confidence 3458999988765431 222 35788889999999999 554433 56789999999983
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.47 E-value=5.9 Score=37.41 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.7
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
-.|+||.+++...+. .+.-.+||+..+..|+..... .+..||.|++.+..
T Consensus 250 ~s~p~~~~~~~~~d~--------------~~lP~~~~~~~~l~~~~t~~~----~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDS--------------NFLPCPCGFRLCLFCHKTISD----GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccc--------------ccccccccccchhhhhhcccc----cCCCCCccCCcccc
Confidence 579999988754432 112247899989999888877 77899999977643
No 129
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=57.14 E-value=11 Score=40.62 Aligned_cols=56 Identities=25% Similarity=0.487 Sum_probs=40.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
...++|.||.+.+.... .+| .-||.-.|+---|..|. ++..++ .+..||-|++.|.
T Consensus 13 ~~~~~c~iCGd~vg~~~----------~Ge-~FVAC~eC~fpvCr~cy-eye~~~--g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKE----------DGQ-PFVACHVCGFPVCKPCY-EYERSE--GNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCC----------CCC-EEEEeccCCCccccchh-hhhhhc--CCccCCccCCchh
Confidence 36778999988765431 223 35677889988999999 554433 5678999999987
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=55.90 E-value=12 Score=28.54 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=23.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
...++|-||.+.+.... .++ ..||.-.|+---+..|.+-=..+ ....||.|+..|..
T Consensus 7 ~~~qiCqiCGD~VGl~~----------~Ge-~FVAC~eC~fPvCr~CyEYErke---g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTE----------NGE-VFVACHECAFPVCRPCYEYERKE---GNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-S----------SSS-B--S-SSS-----HHHHHHHHHT---S-SB-TTT--B---
T ss_pred cCCcccccccCccccCC----------CCC-EEEEEcccCCccchhHHHHHhhc---CcccccccCCCccc
Confidence 45779999988765431 112 24566788888899999876654 45689999988754
No 131
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=53.65 E-value=7.6 Score=36.11 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=34.7
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCC--ChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC--GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~C--GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
..+...|+||.+.|.-+- .-| ||+-+..|-.+- ...||.|+..++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi-------------------~QC~nGHlaCssC~~~~-------~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI-------------------FQCDNGHLACSSCRTKV-------SNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccc-------------------eecCCCcEehhhhhhhh-------cccCCcccccccc
Confidence 447789999998877642 346 888888887633 3469999999874
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=3.2 Score=37.27 Aligned_cols=51 Identities=25% Similarity=0.579 Sum_probs=37.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcC--------CChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV--------CGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~--------CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
...|.||...+..... ..+..++. |||..+..|++.-+... . ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~------------~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--~-~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDE------------KLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--G-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhcccc------------ccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--h-hcCCcccce
Confidence 3579999888874321 11345677 99999999999998754 2 789999864
No 133
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.18 E-value=11 Score=36.39 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=27.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~ 202 (228)
.....|+||.+.+.. . ...+.|||.|+..|...++.
T Consensus 68 ~~~~~c~ic~~~~~~-~----------------~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG-E----------------IIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc-h----------------hhhcCCCcHHHHHHHHHHhh
Confidence 356789999876554 1 24478999999999999975
No 134
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=51.01 E-value=8.9 Score=36.49 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=33.9
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
.-+|++=.+.-++..| . ..|.||||.-.+-|.+--..+ ...+-||.|-.
T Consensus 336 ~FiCPVlKe~~t~ENp--------------P-~ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENP--------------P-VMLECGHVISKEALSVLSQNG-VLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCC--------------C-eeeeccceeeHHHHHHHhhcC-cEEeeCCCCCc
Confidence 4578886655444432 2 448999999999999876543 33578999943
No 135
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=49.54 E-value=11 Score=33.53 Aligned_cols=54 Identities=22% Similarity=0.469 Sum_probs=35.6
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCC-----ChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC-----GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~C-----GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
...|-||......... + .-..+| ....|..|++.|+... .+..|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~-----------~---~l~~pC~C~g~l~~vH~~cl~~W~~~~--~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNG-----------L---LLISPCSCKGSLAYVHRSCLEKWFSIK--GNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccc-----------c---ccccCccccCcHHHHHHHHHHhhhccc--cCeeeecccccceec
Confidence 4679999876543320 0 012334 2446999999998743 778899998876544
No 136
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=48.04 E-value=6 Score=40.76 Aligned_cols=51 Identities=22% Similarity=0.594 Sum_probs=38.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
...|+||...+.++ ..+.|-|.|...|+..-+.... ..-.||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p------------------~~~kc~~~~l~~~~n~~f~~~~-~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP------------------SLLKCDHIFLKFCLNKLFESKK-GPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc------------------chhhhhHHHHhhhhhceeeccC-ccccchhhhhhhhhh
Confidence 34799999888775 2378999999999988665331 256899999776544
No 137
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.66 E-value=9.7 Score=34.43 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.3
Q ss_pred eEEcCCChHhhHHHHHHHHh
Q 027109 183 VAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 183 vavL~CGHvFH~~CLe~wl~ 202 (228)
.-++.|+||||..|...-..
T Consensus 18 f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 18 FFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred eeeeechhhhhhhhcccCCc
Confidence 35679999999999877654
No 138
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=44.99 E-value=7.1 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=13.9
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
..|||+|-..- .+..||+|...
T Consensus 5 ~~CGy~y~~~~----------~~~~CP~Cg~~ 26 (33)
T cd00350 5 PVCGYIYDGEE----------APWVCPVCGAP 26 (33)
T ss_pred CCCCCEECCCc----------CCCcCcCCCCc
Confidence 35777765432 34579999753
No 139
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.87 E-value=15 Score=38.95 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=36.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh--cCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS--AEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~--~~~~~~~sCPiCr~~l~ 219 (228)
+..+|.||...+....- .....-+-.|+|-|+-.||..|.. .+....-.|++|..-|+
T Consensus 95 ~s~Ss~~C~~E~S~~~d-----------s~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVD-----------SSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCccc-----------ccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 56678888766655210 001111234999999999999974 33445567888876554
No 140
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=40.94 E-value=11 Score=38.17 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=29.3
Q ss_pred CcCCCCCCCcccccccccchhhh-----cccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHH
Q 027109 142 VTNAASPDTVKIVCGICQKLLRR-----KSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQR 200 (228)
Q Consensus 142 ~~~s~Sp~~~~~~C~IC~e~L~~-----~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~w 200 (228)
.+.+.++ .....|.||++.|++ ...|. ...+..+.=|-+||..|+..-
T Consensus 504 ~~Vp~d~-e~~~~C~IC~EkFe~v~d~e~~~Wm----------~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 504 ELVPADS-ERQASCPICQEKFEVVFDQEEDLWM----------YKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred eecccCc-ccccCCcccccccceeecchhhhee----------ecceeeeccCceeeccccchH
Confidence 3344444 567789999999974 22232 001112235899999999764
No 141
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=7.3 Score=36.62 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=42.9
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCC
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 224 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~ 224 (228)
-.....+|-||...|..... .--|+|.|...|...|.. ....||.|+....+.-+.
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~-----------------~qg~w~qf~~~~p~~~~~----~~~~~~d~~~~~~pv~aG 156 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTR-----------------IQGCWHQFCYVCPKSNFA----MGNDCPDCRGKISPVLAG 156 (324)
T ss_pred ccCCccceeeeeeeEEeccc-----------------ccCceeeeeecCCchhhh----hhhccchhhcCcCceecc
Confidence 34467899999988877531 124999999999999987 446799999888776553
No 142
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=39.42 E-value=17 Score=33.58 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=34.0
Q ss_pred Ccccccccccchhh-hcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCc--CcccC
Q 027109 150 TVKIVCGICQKLLR-RKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCP--LCLGS 217 (228)
Q Consensus 150 ~~~~~C~IC~e~L~-~~~~~~~~~~~~~~~e~~vvavL~-CGHvFH~~CLe~wl~~~~~~~~sCP--iCr~~ 217 (228)
+.+..|+||+.+-- .++ . ++-+-| |=|-.|..|.+..+.. ...+|| -|.+-
T Consensus 8 ~~d~~CPvCksDrYLnPd-------------i-k~linPECyHrmCESCvdRIFs~---GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPD-------------I-KILINPECYHRMCESCVDRIFSR---GPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCC-------------e-EEEECHHHHHHHHHHHHHHHhcC---CCCCCCCccHHHH
Confidence 35568999986532 221 1 223334 9999999999999873 345699 67543
No 143
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=38.57 E-value=13 Score=27.11 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=14.9
Q ss_pred cceeEEcCCChHhhHHHHHHH
Q 027109 180 QHAVAVLVCGHVYHADCLEQR 200 (228)
Q Consensus 180 ~~vvavL~CGHvFH~~CLe~w 200 (228)
..=||.|.|||.-|..=--.|
T Consensus 9 ~hWVA~L~CGH~QHvRH~PPw 29 (61)
T PF12088_consen 9 GHWVAELSCGHTQHVRHDPPW 29 (61)
T ss_pred CCEEEEecccccccccCCCCC
Confidence 335799999999887544344
No 144
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.74 E-value=23 Score=26.98 Aligned_cols=26 Identities=38% Similarity=0.745 Sum_probs=21.7
Q ss_pred ChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 189 GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 189 GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
-|.|+++|.+.-|. ..||-|-..+.-
T Consensus 28 EcTFCadCae~~l~------g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLH------GLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhc------CcCCCCCchhhc
Confidence 57899999999887 679999887643
No 145
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.12 E-value=23 Score=35.08 Aligned_cols=45 Identities=29% Similarity=0.631 Sum_probs=33.3
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+.|.||.... . .++.+|- |.-|+..|+. .+..||+|...+...+
T Consensus 479 ~~~~~~~~~~~-~------------------~~~~~~~---~~~~l~~~~~----~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM-S------------------ARITPCS---HALCLRKWLY----VQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH-H------------------hcccccc---chhHHHhhhh----hccccCCCchhhhccc
Confidence 56788887765 1 1344666 9999999998 5688999987765544
No 146
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=34.55 E-value=50 Score=30.65 Aligned_cols=58 Identities=19% Similarity=0.387 Sum_probs=36.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC-----CCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI-----RDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~-----~~~sCPiCr~~l~~ 220 (228)
...|-||.+.+.+..... +.. .---|+-++|..||-..+...+. ....||.|.+.+..
T Consensus 182 ~~~celc~~ei~e~~~~~--a~c---------~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSR--ATC---------PNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred chhhHHHHHHhcccccee--ccC---------CCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 358999999986443110 000 01248999999999995433222 23679999987654
No 147
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=9.1 Score=32.35 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=27.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-------hhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-------YHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-------FH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
++.+|.||++.--.. -|||. |++.|--.-....++--..|-+|+..
T Consensus 64 ddatC~IC~KTKFAD---------------------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD---------------------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcchhhhhhccccc---------------------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 677999998652111 25554 66666655544333444668888654
No 148
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.73 E-value=21 Score=21.49 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=6.9
Q ss_pred ccccccchhhh
Q 027109 154 VCGICQKLLRR 164 (228)
Q Consensus 154 ~C~IC~e~L~~ 164 (228)
+|+-|...+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 47777665544
No 149
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.71 E-value=26 Score=32.40 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=27.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~ 202 (228)
+.+-|.+|++++.++ .+.+=||+|..+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dP------------------vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP------------------VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC------------------ccCCCCeeeeHHHHHHHHH
Confidence 566799999988775 2357799999999999863
No 150
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.95 E-value=23 Score=24.20 Aligned_cols=23 Identities=43% Similarity=1.041 Sum_probs=15.3
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
.|||.|-+. +...+. ....||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~----~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTR----RGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-Hhhhcc----CCCCCCCC
Confidence 578877665 444443 55679988
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=29.83 E-value=35 Score=32.70 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=24.1
Q ss_pred CCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcCcccCc
Q 027109 178 GEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSL 218 (228)
Q Consensus 178 ~e~~vvavL~CGHvFH~~CLe~wl~~~--~~~~~sCPiCr~~l 218 (228)
++......|.||||-..+ .|=..+ ..+...||+|+..=
T Consensus 312 ~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 312 DEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred cccCCeEEEecccccccc---ccccccccCcccCcCCeeeeec
Confidence 344456778999994432 574332 23467899999653
No 152
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=29.29 E-value=30 Score=20.84 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=10.7
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
.|.+|.+..... . .-.=..|.-++|.+|+
T Consensus 2 ~C~~C~~~~~~~-~--------------~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-W--------------FYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-----------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-c--------------eEECccCCCccChhcC
Confidence 488888776651 1 2234689999999996
No 153
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.95 E-value=21 Score=22.81 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=19.7
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhh
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYH 193 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH 193 (228)
.+|+-|...|...+. .++ .....+.=-.|||+|+
T Consensus 3 i~Cp~C~~~y~i~d~------~ip-~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE------KIP-PKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHH------HCC-CCCcEEECCCCCCEeC
Confidence 468888888776531 111 1222345567888874
No 154
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=28.82 E-value=26 Score=20.91 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=8.1
Q ss_pred CCCcCcccCc
Q 027109 209 PPCPLCLGSL 218 (228)
Q Consensus 209 ~sCPiCr~~l 218 (228)
..||||.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998876
No 155
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=27.43 E-value=19 Score=33.42 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCCCCcccccccccc-hhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HHhcCCCCC--CCCcCcccCccc
Q 027109 145 AASPDTVKIVCGICQK-LLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RTSAEDIRD--PPCPLCLGSLMQ 220 (228)
Q Consensus 145 s~Sp~~~~~~C~IC~e-~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~-wl~~~~~~~--~sCPiCr~~l~~ 220 (228)
.+-|+.+...|.+|.. .|.--.- .=..-.||++|+..|-.+ ++......+ ..|++|-..|..
T Consensus 161 ~W~PD~ea~~C~~C~~~~Ftl~~R--------------RHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 161 VWLPDSEATECMVCGCTEFTLSER--------------RHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred cccCcccceecccCCCccccHHHH--------------HHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence 4456667889999998 4432110 001257999999999877 322111122 269999888764
No 156
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.02 E-value=24 Score=31.22 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.8
Q ss_pred cccccccchhhh
Q 027109 153 IVCGICQKLLRR 164 (228)
Q Consensus 153 ~~C~IC~e~L~~ 164 (228)
..|+||...|..
T Consensus 3 ~~CP~C~~~l~~ 14 (272)
T PRK11088 3 YQCPLCHQPLTL 14 (272)
T ss_pred ccCCCCCcchhc
Confidence 369999999963
No 157
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.97 E-value=36 Score=32.85 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=25.2
Q ss_pred cCCChHhhHHHHHHHHhcC----------------------CCCCCCCcCcccCcccCC
Q 027109 186 LVCGHVYHADCLEQRTSAE----------------------DIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~----------------------~~~~~sCPiCr~~l~~~~ 222 (228)
=.|||.|+..|.+.|=... ..+-..||.|...+.+..
T Consensus 182 C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 182 CGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred CCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 3689999999887662211 223456999998877665
No 158
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.53 E-value=5.6 Score=29.68 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=15.6
Q ss_pred ChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 189 GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 189 GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
||.++..|...+.. ...||-|...+..-
T Consensus 16 ~~~~C~~C~~~~~~-----~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 16 GHYHCEACQKDYKK-----EAFCPDCGQPLEVL 43 (70)
T ss_dssp TEEEETTT--EEEE-----EEE-TTT-SB-EEE
T ss_pred CEEECcccccccee-----cccCCCcccHHHHH
Confidence 66677777777654 35799888877543
No 160
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.76 E-value=24 Score=23.13 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=16.7
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
..|||.|-.. ....+.....||.|..
T Consensus 9 ~~Cg~~fe~~-----~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVL-----QSISEDDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEE-----EEcCCCCCCcCCCCCC
Confidence 4688888543 2222235578999987
No 161
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=48 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.696 Sum_probs=18.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 193 HADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 193 H~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
-..||.+--. .-.+.|||||-.+...|
T Consensus 96 RktCIrkn~~---~~gnpCPICRDeyL~~D 122 (239)
T KOG4021|consen 96 RKTCIRKNGR---FLGNPCPICRDEYLYFD 122 (239)
T ss_pred hhHHHhhcCe---ecCCCCCccccceEEEe
Confidence 4578887522 13478999998876554
Done!