Query 027109
Match_columns 228
No_of_seqs 162 out of 1114
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 2.4E-14 8.4E-19 109.8 6.2 72 151-222 24-96 (114)
2 2ecl_A Ring-box protein 2; RNF 99.5 2.6E-14 8.8E-19 105.0 3.4 70 146-222 9-78 (81)
3 3dpl_R Ring-box protein 1; ubi 99.4 2.3E-14 7.9E-19 111.5 1.9 71 147-221 32-102 (106)
4 1x4j_A Ring finger protein 38; 99.4 5.8E-14 2E-18 100.6 2.7 54 150-222 21-74 (75)
5 2ect_A Ring finger protein 126 99.4 1.2E-13 4.1E-18 99.3 4.2 56 150-224 13-68 (78)
6 4a0k_B E3 ubiquitin-protein li 99.4 1.1E-14 3.9E-19 115.5 -1.6 71 147-221 43-113 (117)
7 2ep4_A Ring finger protein 24; 99.4 1.6E-13 5.6E-18 97.7 4.6 54 150-222 13-66 (74)
8 2kiz_A E3 ubiquitin-protein li 99.4 2.6E-13 9E-18 95.4 4.0 53 151-222 13-65 (69)
9 2l0b_A E3 ubiquitin-protein li 99.4 2.3E-13 7.7E-18 101.7 3.7 51 151-220 39-89 (91)
10 2ea6_A Ring finger protein 4; 99.4 4.4E-13 1.5E-17 93.3 4.9 56 150-220 13-68 (69)
11 1iym_A EL5; ring-H2 finger, ub 99.4 1.7E-13 5.7E-18 92.2 2.1 50 151-219 4-54 (55)
12 3ng2_A RNF4, snurf, ring finge 99.4 4.1E-13 1.4E-17 94.3 4.0 59 150-223 8-66 (71)
13 2ecm_A Ring finger and CHY zin 99.3 2.1E-13 7.3E-18 91.5 2.1 51 151-219 4-54 (55)
14 2d8t_A Dactylidin, ring finger 99.3 9.9E-13 3.4E-17 93.4 3.9 54 147-222 10-63 (71)
15 2xeu_A Ring finger protein 4; 99.3 9.5E-13 3.2E-17 90.3 3.5 57 151-222 2-58 (64)
16 2djb_A Polycomb group ring fin 99.3 2.9E-12 9.8E-17 91.2 4.6 52 151-223 14-65 (72)
17 1g25_A CDK-activating kinase a 99.2 8.4E-12 2.9E-16 86.9 4.7 55 151-222 2-57 (65)
18 1chc_A Equine herpes virus-1 r 99.2 2.9E-12 9.9E-17 89.6 2.2 50 151-221 4-53 (68)
19 2ecy_A TNF receptor-associated 99.2 7.6E-12 2.6E-16 87.4 3.7 52 150-222 13-64 (66)
20 2ysl_A Tripartite motif-contai 99.2 8.2E-12 2.8E-16 88.2 3.5 53 151-222 19-71 (73)
21 2ecn_A Ring finger protein 141 99.2 6.2E-12 2.1E-16 88.5 2.8 51 151-224 14-64 (70)
22 2csy_A Zinc finger protein 183 99.2 1.2E-11 4E-16 89.7 3.9 47 151-219 14-60 (81)
23 2ct2_A Tripartite motif protei 99.2 1.8E-11 6.3E-16 89.0 4.8 57 151-222 14-70 (88)
24 2yur_A Retinoblastoma-binding 99.2 1.7E-11 5.7E-16 87.9 4.1 52 151-222 14-66 (74)
25 4ayc_A E3 ubiquitin-protein li 99.1 9.3E-12 3.2E-16 99.2 2.2 48 152-221 53-100 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.1 2.9E-11 9.9E-16 93.2 4.3 57 151-222 6-62 (133)
27 1t1h_A Gspef-atpub14, armadill 99.1 2.2E-11 7.6E-16 87.3 3.2 51 151-222 7-57 (78)
28 2d8s_A Cellular modulator of i 99.1 2.5E-11 8.7E-16 89.9 3.4 54 151-222 14-72 (80)
29 2ecw_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 85.9 4.3 54 151-222 18-73 (85)
30 3lrq_A E3 ubiquitin-protein li 99.1 1.7E-11 5.7E-16 92.9 1.7 52 151-222 21-72 (100)
31 2egp_A Tripartite motif-contai 99.1 1.6E-11 5.6E-16 87.7 1.4 54 151-222 11-67 (79)
32 2ecv_A Tripartite motif-contai 99.1 4.2E-11 1.4E-15 86.0 3.2 55 151-223 18-74 (85)
33 2ysj_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 82.3 3.0 45 151-214 19-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 90.1 2.4 51 151-222 21-71 (99)
35 3ztg_A E3 ubiquitin-protein li 99.1 8.5E-11 2.9E-15 86.7 4.2 49 151-219 12-61 (92)
36 2ckl_A Polycomb group ring fin 99.1 7.6E-11 2.6E-15 89.9 3.6 50 151-221 14-63 (108)
37 2ecj_A Tripartite motif-contai 99.0 8E-11 2.7E-15 79.4 3.0 45 151-214 14-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.0 9.6E-11 3.3E-15 91.3 3.3 49 151-220 51-99 (124)
39 2ckl_B Ubiquitin ligase protei 99.0 8E-11 2.7E-15 95.9 2.5 50 151-220 53-102 (165)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5.1E-15 89.2 3.4 57 151-222 71-127 (133)
41 3l11_A E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 91.5 0.1 52 148-220 11-62 (115)
42 1jm7_A BRCA1, breast cancer ty 99.0 1.3E-10 4.3E-15 88.2 2.0 54 151-223 20-73 (112)
43 1z6u_A NP95-like ring finger p 98.9 3E-10 1E-14 92.4 2.7 50 151-221 77-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 98.9 2.8E-10 9.7E-15 87.5 1.8 51 151-222 22-72 (116)
45 2ct0_A Non-SMC element 1 homol 98.9 6.3E-10 2.2E-14 81.7 3.5 54 151-223 14-67 (74)
46 3hct_A TNF receptor-associated 98.9 3.7E-10 1.3E-14 87.5 2.1 52 150-222 16-67 (118)
47 1e4u_A Transcriptional repress 98.9 2.1E-09 7.1E-14 79.0 5.1 57 150-223 9-65 (78)
48 2kr4_A Ubiquitin conjugation f 98.8 9.3E-10 3.2E-14 81.5 2.4 50 151-222 13-62 (85)
49 2kre_A Ubiquitin conjugation f 98.8 1.4E-09 4.8E-14 83.2 3.1 50 151-222 28-77 (100)
50 1wgm_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 82.2 3.1 50 151-222 21-71 (98)
51 2vje_A E3 ubiquitin-protein li 98.8 2.2E-09 7.5E-14 75.5 2.6 53 148-220 4-57 (64)
52 1jm7_B BARD1, BRCA1-associated 98.8 8.4E-10 2.9E-14 85.4 -0.2 48 151-222 21-69 (117)
53 1bor_A Transcription factor PM 98.7 6.8E-10 2.3E-14 75.9 -1.2 48 150-222 4-51 (56)
54 3knv_A TNF receptor-associated 98.7 2.4E-09 8.3E-14 86.4 1.0 48 151-219 30-77 (141)
55 2yu4_A E3 SUMO-protein ligase 98.7 8.9E-09 3.1E-13 77.3 3.9 53 150-220 5-63 (94)
56 2vje_B MDM4 protein; proto-onc 98.7 8.1E-09 2.8E-13 72.4 2.6 51 150-220 5-56 (63)
57 2c2l_A CHIP, carboxy terminus 98.6 8.1E-09 2.8E-13 88.4 2.6 51 151-222 207-257 (281)
58 4ic3_A E3 ubiquitin-protein li 98.6 4.5E-09 1.5E-13 75.6 0.4 45 151-221 23-68 (74)
59 2y1n_A E3 ubiquitin-protein li 98.6 1.3E-08 4.3E-13 95.2 2.5 49 153-222 333-381 (389)
60 3hcs_A TNF receptor-associated 98.6 1.5E-08 5.3E-13 82.6 2.1 52 150-222 16-67 (170)
61 1wim_A KIAA0161 protein; ring 98.4 1E-07 3.5E-12 70.9 3.1 55 151-220 4-66 (94)
62 2ecg_A Baculoviral IAP repeat- 98.4 3.3E-08 1.1E-12 71.0 0.3 46 151-222 24-70 (75)
63 2f42_A STIP1 homology and U-bo 98.4 9.1E-08 3.1E-12 80.8 2.9 51 151-222 105-155 (179)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.4 8.2E-08 2.8E-12 67.3 2.0 50 151-220 5-59 (60)
65 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4.3E-12 84.6 2.7 54 150-222 179-234 (267)
66 2yho_A E3 ubiquitin-protein li 98.3 1.2E-07 4.1E-12 69.3 0.3 45 151-221 17-62 (79)
67 2ea5_A Cell growth regulator w 98.2 4.4E-07 1.5E-11 64.6 2.3 46 151-222 14-60 (68)
68 2bay_A PRE-mRNA splicing facto 98.2 3.7E-07 1.3E-11 64.0 1.3 49 153-223 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.0 4.7E-07 1.6E-11 83.1 -0.7 45 151-221 294-339 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 5.2E-07 1.8E-11 83.7 -1.4 59 151-221 307-374 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 6.5E-06 2.2E-10 63.9 2.5 49 154-222 3-51 (101)
72 3nw0_A Non-structural maintena 97.4 6.8E-05 2.3E-09 65.4 3.2 54 152-224 180-233 (238)
73 2lri_C Autoimmune regulator; Z 92.9 0.074 2.5E-06 37.6 3.1 35 186-220 28-62 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.052 1.8E-06 40.0 1.8 36 151-201 2-38 (101)
75 1f62_A Transcription factor WS 90.6 0.084 2.9E-06 34.8 1.2 32 186-217 19-50 (51)
76 2k16_A Transcription initiatio 90.1 0.061 2.1E-06 38.2 0.2 56 151-221 17-72 (75)
77 1fp0_A KAP-1 corepressor; PHD 89.7 0.096 3.3E-06 39.3 1.0 59 151-227 24-82 (88)
78 2e6r_A Jumonji/ARID domain-con 88.7 0.059 2E-06 40.3 -0.8 54 149-217 13-66 (92)
79 2l5u_A Chromodomain-helicase-D 88.6 0.26 8.9E-06 33.9 2.5 50 150-217 9-58 (61)
80 1wil_A KIAA1045 protein; ring 88.4 0.25 8.7E-06 37.2 2.5 30 186-215 33-74 (89)
81 2puy_A PHD finger protein 21A; 86.1 0.045 1.5E-06 37.5 -2.6 54 151-222 4-57 (60)
82 1mm2_A MI2-beta; PHD, zinc fin 85.9 0.14 4.7E-06 35.4 -0.2 52 149-218 6-57 (61)
83 2ysm_A Myeloid/lymphoid or mix 84.9 0.15 5.2E-06 38.6 -0.4 51 150-215 5-55 (111)
84 1xwh_A Autoimmune regulator; P 84.7 0.13 4.3E-06 36.0 -0.8 54 151-222 7-60 (66)
85 2yql_A PHD finger protein 21A; 84.0 0.093 3.2E-06 35.5 -1.8 49 150-216 7-55 (56)
86 1we9_A PHD finger family prote 81.4 0.1 3.6E-06 35.8 -2.4 55 150-218 4-59 (64)
87 1weu_A Inhibitor of growth fam 80.3 1.7 6E-05 32.5 4.0 31 188-220 57-88 (91)
88 3o36_A Transcription intermedi 79.9 0.36 1.2E-05 39.5 0.0 33 187-219 21-53 (184)
89 1wep_A PHF8; structural genomi 79.5 0.86 2.9E-05 32.6 2.0 59 147-220 7-66 (79)
90 3u5n_A E3 ubiquitin-protein li 79.0 0.33 1.1E-05 40.6 -0.5 32 187-218 24-55 (207)
91 2ko5_A Ring finger protein Z; 78.6 0.59 2E-05 35.8 0.9 34 186-223 42-76 (99)
92 1weo_A Cellulose synthase, cat 77.7 2.6 9E-05 31.9 4.2 55 151-219 15-69 (93)
93 1wen_A Inhibitor of growth fam 76.0 1.2 3.9E-05 31.7 1.7 32 188-221 37-69 (71)
94 2ro1_A Transcription intermedi 74.1 0.86 2.9E-05 37.9 0.7 34 186-219 18-51 (189)
95 3v43_A Histone acetyltransfera 72.1 2.6 8.9E-05 31.9 3.0 55 152-215 5-62 (112)
96 2yt5_A Metal-response element- 71.7 0.28 9.7E-06 33.7 -2.4 58 150-220 4-64 (66)
97 3asl_A E3 ubiquitin-protein li 70.6 0.68 2.3E-05 32.8 -0.6 31 187-217 38-69 (70)
98 2ysm_A Myeloid/lymphoid or mix 70.4 0.34 1.2E-05 36.6 -2.3 35 183-217 70-104 (111)
99 3shb_A E3 ubiquitin-protein li 69.9 0.55 1.9E-05 34.1 -1.2 30 187-216 46-76 (77)
100 2e6s_A E3 ubiquitin-protein li 69.6 0.55 1.9E-05 34.0 -1.3 30 187-216 46-76 (77)
101 2l43_A N-teminal domain from h 69.5 1.3 4.6E-05 32.6 0.8 57 150-221 23-79 (88)
102 2kwj_A Zinc finger protein DPF 69.0 0.23 7.9E-06 38.1 -3.6 36 186-221 77-112 (114)
103 3v43_A Histone acetyltransfera 68.3 0.76 2.6E-05 35.0 -0.8 31 186-216 81-111 (112)
104 1wev_A Riken cDNA 1110020M19; 66.8 0.26 8.9E-06 36.4 -3.6 36 187-222 38-77 (88)
105 3i2d_A E3 SUMO-protein ligase 63.4 4.8 0.00016 37.3 3.4 38 183-222 263-302 (371)
106 3lqh_A Histone-lysine N-methyl 61.0 0.59 2E-05 39.1 -2.9 56 153-219 3-65 (183)
107 1wem_A Death associated transc 60.8 1.6 5.4E-05 30.9 -0.3 53 152-220 16-73 (76)
108 2lbm_A Transcriptional regulat 59.5 8.4 0.00029 31.0 3.8 31 187-217 80-117 (142)
109 2lv9_A Histone-lysine N-methyl 58.8 1.9 6.6E-05 32.2 -0.1 31 186-217 46-76 (98)
110 2ri7_A Nucleosome-remodeling f 58.8 1.2 4E-05 35.9 -1.4 52 151-217 7-59 (174)
111 4fo9_A E3 SUMO-protein ligase 58.4 6.6 0.00023 36.2 3.4 38 183-222 229-268 (360)
112 4gne_A Histone-lysine N-methyl 56.6 3.2 0.00011 31.8 0.8 27 187-215 34-60 (107)
113 2kgg_A Histone demethylase jar 56.5 0.53 1.8E-05 31.3 -3.2 48 154-215 4-52 (52)
114 1wee_A PHD finger family prote 55.7 1.5 5.2E-05 30.8 -1.1 55 151-220 15-69 (72)
115 3m62_A Ubiquitin conjugation f 53.5 7.1 0.00024 40.3 3.0 50 151-222 890-940 (968)
116 3ask_A E3 ubiquitin-protein li 53.4 1.8 6.2E-05 37.5 -1.2 31 187-217 194-225 (226)
117 2cs3_A Protein C14ORF4, MY039 49.5 13 0.00043 27.8 3.0 40 149-202 12-51 (93)
118 1wew_A DNA-binding family prot 48.6 5.8 0.0002 28.2 1.0 33 187-219 37-74 (78)
119 2ku3_A Bromodomain-containing 48.6 4.4 0.00015 28.7 0.4 53 150-217 14-66 (71)
120 3mjh_B Early endosome antigen 46.8 3.8 0.00013 25.5 -0.2 13 208-220 5-17 (34)
121 3ql9_A Transcriptional regulat 46.4 16 0.00053 29.0 3.3 31 187-217 74-111 (129)
122 2vnf_A ING 4, P29ING4, inhibit 46.1 1.8 6.1E-05 29.6 -1.9 27 188-216 31-58 (60)
123 2vpb_A Hpygo1, pygopus homolog 44.2 8.7 0.0003 26.6 1.4 51 151-215 7-64 (65)
124 3c6w_A P28ING5, inhibitor of g 42.0 2.4 8.1E-05 29.0 -1.8 27 188-216 30-57 (59)
125 2gmg_A Hypothetical protein PF 39.7 14 0.00048 28.4 2.0 26 186-220 71-96 (105)
126 2g6q_A Inhibitor of growth pro 37.2 3.1 0.00011 28.7 -1.8 28 188-217 32-60 (62)
127 2xb1_A Pygopus homolog 2, B-ce 36.5 0.9 3.1E-05 34.6 -5.2 53 153-219 4-63 (105)
128 3o70_A PHD finger protein 13; 34.6 4.4 0.00015 28.3 -1.4 49 151-216 18-66 (68)
129 3mpx_A FYVE, rhogef and PH dom 34.3 8.4 0.00029 34.6 0.0 57 148-218 371-430 (434)
130 2cu8_A Cysteine-rich protein 2 34.0 16 0.00056 24.7 1.5 40 151-219 8-47 (76)
131 2jmi_A Protein YNG1, ING1 homo 33.8 4 0.00014 30.4 -1.8 26 190-217 50-76 (90)
132 1y02_A CARP2, FYVE-ring finger 31.9 8.5 0.00029 30.0 -0.3 53 146-216 13-65 (120)
133 1zfo_A LAsp-1; LIM domain, zin 30.9 7.9 0.00027 22.9 -0.5 28 153-197 4-31 (31)
134 3t7l_A Zinc finger FYVE domain 29.7 16 0.00056 26.6 0.9 40 149-202 17-56 (90)
135 1z2q_A LM5-1; membrane protein 29.6 12 0.00043 26.8 0.2 40 148-201 17-56 (84)
136 1x62_A C-terminal LIM domain p 29.2 12 0.00041 25.8 0.1 29 151-197 14-42 (79)
137 1x4i_A Inhibitor of growth pro 28.9 9.6 0.00033 26.8 -0.5 27 190-218 30-56 (70)
138 1x4u_A Zinc finger, FYVE domai 27.5 18 0.0006 25.9 0.7 42 147-202 9-50 (84)
139 1joc_A EEA1, early endosomal a 26.9 12 0.00042 28.9 -0.2 40 148-201 65-104 (125)
140 2yw8_A RUN and FYVE domain-con 26.9 14 0.00047 26.4 0.1 58 148-219 15-74 (82)
141 1x64_A Alpha-actinin-2 associa 21.4 35 0.0012 23.8 1.4 29 151-197 24-52 (89)
142 1wfk_A Zinc finger, FYVE domai 21.3 21 0.00072 26.0 0.1 37 151-201 8-44 (88)
143 2co8_A NEDD9 interacting prote 21.0 21 0.00071 24.9 0.1 30 151-197 14-43 (82)
144 2dj7_A Actin-binding LIM prote 20.8 17 0.00058 25.3 -0.5 30 151-197 14-43 (80)
145 2ct7_A Ring finger protein 31; 20.7 15 0.0005 26.4 -0.8 15 186-200 47-61 (86)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=2.4e-14 Score=109.79 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=49.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC-CCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~-~~~~sCPiCr~~l~~~~ 222 (228)
....|+||++.|.+.................++.+++|||+||.+||.+|+.... .....||+||..|..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3458999999998764221001111112224556889999999999999995332 25679999999998775
No 2
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=105.01 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=49.7
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 146 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 146 ~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+.+.+..+|+||++.|.+.++.+ ......+ ..++.++.|||+||.+||++|+. .+.+||+||+.+....
T Consensus 9 w~~~~~~~~C~IC~~~~~~~C~iC--~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 9 WSWDVECDTCAICRVQVMDACLRC--QAENKQE-DCVVVWGECNHSFHNCCMSLWVK----QNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCCCSCBTTTTBCTTSCCTTH--HHHTCTT-TCCEEEETTSCEEEHHHHHHHTT----TCCBCTTTCCBCCEEE
T ss_pred eeecCCCCCCcccChhhhccCccc--ccccCCC-ceEEEeCCCCCccChHHHHHHHH----hCCCCCCcCCCcchhh
Confidence 345667889999999998765433 1111122 22344456999999999999998 5579999999986543
No 3
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=2.3e-14 Score=111.48 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=51.0
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+.+.+.++|+||++.|.+.++.+........++...+.+++|||+||.+||.+||. .+.+||+||..+...
T Consensus 32 ~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 32 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQ 102 (106)
T ss_dssp EESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT----TCSBCSSSCSBCCEE
T ss_pred ecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH----cCCcCcCCCCcceee
Confidence 44567889999999999876533100111223344567789999999999999998 568999999997654
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-14 Score=100.59 Aligned_cols=54 Identities=22% Similarity=0.612 Sum_probs=44.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.|.... .+.+++|||+||.+||.+|+. .+..||+||..+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~----~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ---------------LLRVLPCNHEFHAKCVDKWLK----ANRTCPICRADSGPSS 74 (75)
T ss_dssp SSCCEETTTTEECCBTC---------------EEEEETTTEEEETTHHHHHHH----HCSSCTTTCCCCCCCC
T ss_pred CCCCCCeECCcccCCCC---------------eEEEECCCCHhHHHHHHHHHH----cCCcCcCcCCcCCCCC
Confidence 35678999999987754 457789999999999999998 4578999999987653
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.2e-13 Score=99.30 Aligned_cols=56 Identities=23% Similarity=0.593 Sum_probs=46.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 224 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~ 224 (228)
.+...|+||++.|.... .+.+++|||+||..||.+|+. ....||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE---------------SVRQLPCNHLFHDSCIVPWLE----QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS---------------CEEECTTSCEEETTTTHHHHT----TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC---------------CEEEeCCCCeecHHHHHHHHH----cCCcCcCcCCccCCcccC
Confidence 35678999999987653 346789999999999999997 457999999998876643
No 6
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.40 E-value=1.1e-14 Score=115.52 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=3.9
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+.+.+.++|+||++.|.+.++.+-.......++...+..++|||+||.+||.+|+. .+.+||+||..+...
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~----~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQ 113 (117)
T ss_dssp EECCCC---------------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH----cCCcCCCCCCeeeee
Confidence 45667789999999999876543111111123444556689999999999999998 568999999997654
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=97.66 Aligned_cols=54 Identities=22% Similarity=0.650 Sum_probs=44.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.|.... .+.+++|||+||.+||.+|+. .+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD---------------ELGICPCKHAFHRKCLIKWLE----VRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSS---------------CEEEETTTEEEEHHHHHHHHH----HCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCC---------------cEEEcCCCCEecHHHHHHHHH----cCCcCCCcCccccccc
Confidence 35678999999987653 346789999999999999998 4468999999986654
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=95.37 Aligned_cols=53 Identities=26% Similarity=0.591 Sum_probs=43.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.... .+.+++|||+||..||.+|+. .+..||+||..+....
T Consensus 13 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE---------------DVRRLPCMHLFHQVCVDQWLI----TNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSS---------------CEEECTTSCEEEHHHHHHHHH----HCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCC---------------cEEEeCCCCHHHHHHHHHHHH----cCCCCcCcCccccCcC
Confidence 5678999999886543 346789999999999999998 4568999999987654
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=101.66 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=43.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+...|+||++.|.... .+.+++|||+||..||.+|+. ....||+||..+.+
T Consensus 39 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD---------------VATELPCHHYFHKPCVSIWLQ----KSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTC---------------EEEEETTTEEEEHHHHHHHHT----TTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCC---------------cEEecCCCChHHHHHHHHHHH----cCCcCcCcCccCCC
Confidence 5678999999887654 456789999999999999998 55799999998865
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=93.29 Aligned_cols=56 Identities=21% Similarity=0.556 Sum_probs=44.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
.+...|+||++.|.+... ....+.+++|||+||.+||++|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTT-----------TTCCEEECSSSCEEEHHHHHHHHH----HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCcccccccc-----------ccCCeEeCCCCChhcHHHHHHHHH----cCCCCCCCCCccCc
Confidence 457789999999987521 011346789999999999999998 45789999998764
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=1.7e-13 Score=92.24 Aligned_cols=50 Identities=28% Similarity=0.714 Sum_probs=40.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~-CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
+...|+||++.|.... .+.+++ |||+||.+||.+|+. .+..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGE---------------EARFLPRCGHGFHAECVDMWLG----SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTS---------------CCEECSSSCCEECTTHHHHTTT----TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCC---------------ceEECCCCCCcccHHHHHHHHH----cCCcCcCCCCEeE
Confidence 4568999999987753 235566 999999999999997 5678999998864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=4.1e-13 Score=94.33 Aligned_cols=59 Identities=20% Similarity=0.510 Sum_probs=46.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
.+...|+||++.|.+... ....+.+++|||+||..||++|+. ....||+||..+...+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHT-----------TTCCEEECTTSCEEEHHHHHHHHH----HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhcccc-----------ccCCeEeCCCCChHhHHHHHHHHH----cCCCCCCCCCccChhhe
Confidence 356789999999987510 011346789999999999999998 45799999999886653
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=2.1e-13 Score=91.53 Aligned_cols=51 Identities=31% Similarity=0.628 Sum_probs=41.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
+...|+||++.|.+... .+.+++|||+||.+||.+|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~--------------~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRV--------------VAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTS--------------CEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCc--------------CeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 45689999998865321 3577899999999999999983 478999998864
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.9e-13 Score=93.37 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=43.6
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+..+...|+||++.+.+. .+++|||+||..||.+|+. ....||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHP------------------VSLPCKHVFCYLCVKGASW----LGKRCALCRQEIPEDF 63 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSE------------------EEETTTEEEEHHHHHHCTT----CSSBCSSSCCBCCHHH
T ss_pred ccCCCCCCCccCCcccCCC------------------EEccCCCHHHHHHHHHHHH----CCCcCcCcCchhCHhh
Confidence 3445678999999887553 4569999999999999998 4579999999986543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=9.5e-13 Score=90.34 Aligned_cols=57 Identities=21% Similarity=0.541 Sum_probs=44.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+... ....+.+++|||+||.+||.+|+. .+..||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHH-----------TTCCEEEETTSCEEEHHHHHHHHH----HCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccc-----------cCCCEEeCCCCCchhHHHHHHHHH----cCCCCCCCCccCCccc
Confidence 45689999999987520 001346689999999999999998 4579999999987654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.9e-12 Score=91.19 Aligned_cols=52 Identities=23% Similarity=0.518 Sum_probs=43.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+...|+||++.|.+. +.+++|||+||..||.+|+. ....||+||..+...+.
T Consensus 14 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDA-----------------TTITECLHTFCKSCIVRHFY----YSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSC-----------------EECSSSCCEECHHHHHHHHH----HCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCc-----------------CEECCCCCHHHHHHHHHHHH----cCCcCCCcCcccCcccc
Confidence 567899999887763 23359999999999999997 45789999999987664
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=8.4e-12 Score=86.95 Aligned_cols=55 Identities=25% Similarity=0.452 Sum_probs=43.3
Q ss_pred cccccccccc-hhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQK-LLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e-~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++ .|.+... .+.+++|||+||..||++|+.. ....||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSL--------------KLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSC--------------CEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCcc--------------CeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCcccccc
Confidence 5678999999 7776531 2345799999999999999763 3568999999987654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=2.9e-12 Score=89.57 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=41.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|+||++.+.+. +.+++|||+||..||.+|+. ....||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~~-----------------~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIR----QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHH----HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC-----------------cEecCCCCeeHHHHHHHHHh----CcCcCcCCChhhHhh
Confidence 456899999887652 35689999999999999998 457899999988653
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.6e-12 Score=87.41 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=42.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.+.+. .+++|||+||..||.+|+. .....||+||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP------------------KQTECGHRFCESCMAALLS---SSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC------------------CCCSSSCCCCHHHHHHHHT---TSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe------------------eECCCCCHHHHHHHHHHHH---hCcCCCCCCCcCCChhh
Confidence 3567899999988764 2279999999999999995 24578999999987654
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.2e-12 Score=88.22 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=42.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+. .+++|||+||..||.+|+... .....||+||..+...+
T Consensus 19 ~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSE------------------EECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCe------------------EEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCCccc
Confidence 567899999887753 346999999999999998621 24578999999987654
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=6.2e-12 Score=88.49 Aligned_cols=51 Identities=24% Similarity=0.587 Sum_probs=42.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 224 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~ 224 (228)
+...|+||++.+.+ .+++|||+||..||.+|+. ....||+||..+...+..
T Consensus 14 ~~~~C~IC~~~~~~-------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 14 DEEECCICMDGRAD-------------------LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCSSSCCSCCS-------------------EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTTCCCCC
T ss_pred CCCCCeeCCcCccC-------------------cccCCCCcccHHHHHHHHH----CcCcCCCcCCcccCCCcc
Confidence 56789999876544 3479999999999999988 568999999998876643
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=89.72 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=40.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
+...|+||++.|.+. .+++|||+||..||.+|+. ....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP------------------VVTKCRHYFCESCALEHFR----ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE------------------EECTTSCEEEHHHHHHHHH----HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe------------------eEccCCCHhHHHHHHHHHH----CCCcCCCcCcccc
Confidence 466899999988653 3589999999999999998 4678999999975
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=88.95 Aligned_cols=57 Identities=25% Similarity=0.527 Sum_probs=44.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+... ...+++|||+||..||.+|+... .....||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQL--------------RPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSS--------------CEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCC--------------CeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcccchh
Confidence 56789999998877431 23568999999999999999742 13478999999887654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=87.93 Aligned_cols=52 Identities=21% Similarity=0.655 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~-CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+. .+++ |||+||..||.+|+... ....||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTTC------------------EECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhCC------------------eEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCcc
Confidence 577899999988764 3478 99999999999999843 3468999999865444
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=9.3e-12 Score=99.24 Aligned_cols=48 Identities=23% Similarity=0.656 Sum_probs=40.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
...|+||++.|.+. .+++|||+||..||..|+. ....||+||..+...
T Consensus 53 ~~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA------------------VTLNCAHSFCSYCINEWMK----RKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE------------------EEETTSCEEEHHHHHHHTT----TCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc------------------eECCCCCCccHHHHHHHHH----cCCcCCCCCCcCCCC
Confidence 45799999987653 4579999999999999998 568899999988644
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.9e-11 Score=93.22 Aligned_cols=57 Identities=21% Similarity=0.530 Sum_probs=44.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+.-. ....+.+++|||+||..||.+|+. ....||+|+..+...+
T Consensus 6 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHH-----------TTCCEEEETTCCEEEHHHHHHHHT----TCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccc-----------cccCeEecCCCChhhHHHHHHHHH----hCCCCCCCCCcCcccc
Confidence 56789999999987510 001346689999999999999998 5579999999987654
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=2.2e-11 Score=87.31 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=42.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+||..||.+|+.. ....||+|+..+...+
T Consensus 7 ~~~~C~IC~~~~~~P------------------v~~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKDP------------------VIVSTGQTYERSSIQKWLDA---GHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSSE------------------EEETTTEEEEHHHHHHHHTT---TCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccCC------------------EEcCCCCeecHHHHHHHHHH---CcCCCCCCcCCCChhh
Confidence 567899999988764 34699999999999999972 3678999999987654
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=89.89 Aligned_cols=54 Identities=24% Similarity=0.473 Sum_probs=42.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-----hHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CG-----HvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|.||++.+.+.. . .+++|+ |.||.+||++|+... .+..||+|+..|....
T Consensus 14 ~~~~C~IC~~~~~~~~---------------~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDES---------------P-LITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSS---------------C-EECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCC---------------e-eEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCeeecCc
Confidence 5678999998876543 1 358996 999999999999853 3468999999987654
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=4.3e-11 Score=85.93 Aligned_cols=54 Identities=20% Similarity=0.489 Sum_probs=43.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~--~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+. .+++|||+||..||..|+... ......||+|+..+...+
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKEP------------------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSSC------------------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCcc------------------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 466899999887663 357999999999999999752 123678999999987654
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=1.7e-11 Score=92.91 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=42.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+. +.+++|||+||..||.+|+... ...||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-----------------RLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc-----------------cccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHHH
Confidence 567899999998763 2348999999999999999842 278999999987654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.09 E-value=1.6e-11 Score=87.73 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=42.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC---CCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED---IRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~---~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+. .+++|||+||..||.+|+.... .....||+||..+...+
T Consensus 11 ~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTEP------------------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSSC------------------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCCe------------------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 567899999988663 2379999999999999987421 23678999999987654
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=85.97 Aligned_cols=55 Identities=29% Similarity=0.640 Sum_probs=43.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~--~~~~~sCPiCr~~l~~~~~ 223 (228)
+...|+||++.+.+. .+++|||+||..||..|+... ......||+|+..+...+.
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQP------------------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSSC------------------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccCCc------------------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 567899999987653 236999999999999998741 1236789999999886543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=82.28 Aligned_cols=45 Identities=29% Similarity=0.764 Sum_probs=36.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
+...|+||++.|.+. .+++|||+||..||.+|+... .....||+|
T Consensus 19 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC------------------EECTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred cCCCCCcCCchhCCe------------------EEeCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 567899999887763 346999999999999999742 245689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=3.7e-11 Score=90.12 Aligned_cols=51 Identities=24% Similarity=0.583 Sum_probs=41.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ +.+++|||+||..||.+|+. ....||+|+..+...+
T Consensus 21 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-----------------MIIPQCSHNYCSLCIRKFLS----YKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCc-----------------CEECCCCCHhhHHHHHHHHH----CCCCCCCCCCcCChhh
Confidence 456899999988763 23348999999999999998 4579999999987643
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=8.5e-11 Score=86.73 Aligned_cols=49 Identities=22% Similarity=0.688 Sum_probs=40.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~-CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
+...|+||++.|.++ .+++ |||+|+..||..|+... ....||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC------------------EECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc------------------eECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcCC
Confidence 567899999988763 3578 99999999999999743 3478999999873
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=7.6e-11 Score=89.86 Aligned_cols=50 Identities=16% Similarity=0.524 Sum_probs=41.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|+||++.|.+. +.+++|||+||..||..|+. ....||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA-----------------TTIIECLHSFCKTCIVRYLE----TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHT----SCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc-----------------CEeCCCCChhhHHHHHHHHH----hCCcCcCCCcccccc
Confidence 567899999988763 24459999999999999998 458999999998764
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=8e-11 Score=79.45 Aligned_cols=45 Identities=31% Similarity=0.852 Sum_probs=36.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 214 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiC 214 (228)
+...|+||++.+.+. .+++|||+||..||.+|+... .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP------------------VIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC------------------CCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCcc------------------EeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 567899999988764 237999999999999997632 246789998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=9.6e-11 Score=91.33 Aligned_cols=49 Identities=33% Similarity=0.569 Sum_probs=40.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+...|+||++.|.++ .+++|||+||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP------------------ITTVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc------------------EEeeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 456899999988763 34799999999999999972 44589999999876
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.01 E-value=8e-11 Score=95.95 Aligned_cols=50 Identities=26% Similarity=0.678 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+...|+||++.|.+. +.+++|||+||..||..|+.. ....||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT-----------------MTTKECLHRFCADCIITALRS---GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc-----------------CEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcCCC
Confidence 456899999988763 344599999999999999983 36789999998854
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.5e-10 Score=89.18 Aligned_cols=57 Identities=21% Similarity=0.507 Sum_probs=44.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.+.... ...+.+++|||+||..||++|+. ...+||+||..+...+
T Consensus 71 ~~~~C~iC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHT-----------TCCEEEETTSBEEEHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCcccccccc-----------CcceEeCCCCChhhHHHHHHHHH----cCCCCCCCCCcCChhc
Confidence 566899999999874210 11335689999999999999998 4579999999987654
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=5.3e-11 Score=91.49 Aligned_cols=52 Identities=25% Similarity=0.641 Sum_probs=42.1
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+..+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP------------------VTLPCNHTLCKPCFQSTVEK---ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC------------------EECTTSCEECHHHHCCCCCT---TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce------------------eEcCCCCHHhHHHHHHHHhH---CcCCCCCCCcccCc
Confidence 344678899999887763 34799999999999999973 35789999998764
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.3e-10 Score=88.18 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=42.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+...|+||++.+.+. .+++|||+||..||..|+... .....||+|+..+...+.
T Consensus 20 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP------------------VSTKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC------------------CBCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe------------------EECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcCCHhhc
Confidence 356899999987653 237999999999999999832 123589999999876553
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=3e-10 Score=92.43 Aligned_cols=50 Identities=30% Similarity=0.526 Sum_probs=41.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|+||++.|.++ .+++|||+||..||..|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP------------------VTTECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC------------------EEcCCCCchhHHHHHHHHHh---CCCcCCCCCccCCCC
Confidence 456899999988764 34799999999999999983 345899999998866
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=2.8e-10 Score=87.54 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=41.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+||..||.+|+.. ....||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP------------------VETSCKHLFCRICILRCLKV---MGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---TCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc------------------EEcCCCCcccHHHHHHHHhH---CcCcCCCCCCCCCHhh
Confidence 466899999988663 33799999999999999984 2568999999987654
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=6.3e-10 Score=81.72 Aligned_cols=54 Identities=24% Similarity=0.556 Sum_probs=41.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
....|+||.+.|.... .-..|+|.||.+||.+|+... .+..||+|+..|.....
T Consensus 14 ~i~~C~IC~~~i~~g~-----------------~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-----------------SCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSE-----------------ECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCC-----------------ccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCcCCCCCC
Confidence 4568999998886431 223899999999999999732 33789999999876553
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=3.7e-10 Score=87.54 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=41.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.|.+. .+++|||+||..||.+|+... ...||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe------------------EECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCHHh
Confidence 3567899999887763 347999999999999999742 248999999987653
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.87 E-value=2.1e-09 Score=78.99 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=42.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
.+..+|+||+++++..++. +..++|||.|+..||.+|+.. ....||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~--------------~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDIN--------------FFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTT--------------CCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccccc--------------ccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCCch
Confidence 3667899999987654321 112359999999999999863 45789999999887654
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=9.3e-10 Score=81.53 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+|...||++|+. .+..||+|+..+...+
T Consensus 13 ~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~----~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP------------------VRLPSGTVMDRSIILRHLL----NSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcCC------------------eECCCCCEECHHHHHHHHh----cCCCCCCCcCCCChHh
Confidence 577999999998885 3478999999999999998 3579999999887553
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=1.4e-09 Score=83.22 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=42.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+|...||+.|+. .+..||+|+..+...+
T Consensus 28 ~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~----~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP------------------VRLPSGTIMDRSIILRHLL----NSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSE------------------EEETTTEEEEHHHHHHHTT----SCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCC------------------eECCCCCEEchHHHHHHHH----cCCCCCCCCCCCChhh
Confidence 677999999998885 3468999999999999998 4689999999987654
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=1.9e-09 Score=82.19 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=42.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|| |+|...||++|+. .+..||+|+..+...+
T Consensus 21 ~~~~CpI~~~~m~dP------------------V~~~cG~htf~r~cI~~~l~----~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP------------------VVLPSSRVTVDRSTIARHLL----SDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHTT----TSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCC------------------eECCCCCeEECHHHHHHHHH----hCCCCCCCCCCCChhh
Confidence 567899999998885 347999 9999999999998 3579999999987654
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.78 E-value=2.2e-09 Score=75.53 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=39.6
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
|+.+...|.||++...+. ++..++|||+ |+.+|+.+|+. .+..||+||..+..
T Consensus 4 ~~~~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNG----------------CIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSCSCE----------------EEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCCCCE----------------EEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchhc
Confidence 345677899999764442 1112499999 89999999987 45789999998754
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=8.4e-10 Score=85.42 Aligned_cols=48 Identities=23% Similarity=0.675 Sum_probs=39.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .++ +|||+||..||..|+. ..||+|+..+...+
T Consensus 21 ~~~~C~IC~~~~~~p------------------v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP------------------VCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC------------------BCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc------------------cEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcccc
Confidence 467899999988764 235 8999999999999987 67999999986544
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=6.8e-10 Score=75.91 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=38.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.|.+. .+|+|||+||..||.+| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP------------------KLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC------------------SCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe------------------EEcCCCCcccHHHHccC-------CCCCCcCCcEeecCC
Confidence 3567899999988763 34899999999999885 257999999987654
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=2.4e-09 Score=86.36 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=39.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
+...|+||++.|.++ .+++|||+||..||.+|+.. ....||+||..+.
T Consensus 30 ~~~~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP------------------FQAQCGHRYCSFCLASILSS---GPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHGGG---SCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc------------------EECCCCCccCHHHHHHHHhc---CCCCCCCCCCccc
Confidence 567899999988774 33799999999999999973 3458999999754
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=8.9e-09 Score=77.30 Aligned_cols=53 Identities=19% Similarity=0.516 Sum_probs=40.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcC--CCCCCCCcC--cccC-ccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAE--DIRDPPCPL--CLGS-LMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~-CGHvFH~~CLe~wl~~~--~~~~~sCPi--Cr~~-l~~ 220 (228)
.+...|+||++.|.++ .+++ |||+|...||.+|+... ......||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~dP------------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP------------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSE------------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCC------------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3567899999998874 3354 99999999999999742 124578999 9866 443
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=8.1e-09 Score=72.37 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=38.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
.....|.||++...+. ++..++|||+ |+..|+.+|.. ....||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG----------------NIIHGRTGHLVTCFHCARRLKK----AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE----------------EEEETTEEEEEECHHHHHHHHH----TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe----------------EEEecCCCCHhHHHHHHHHHHH----hCCcCCCcCchhhc
Confidence 4567899999764442 2223499998 99999999987 44789999998754
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=8.1e-09 Score=88.43 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+|+..||..|+... ...||+|+..+...+
T Consensus 207 ~~~~c~i~~~~~~dP------------------v~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSSE------------------EECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcCC------------------eECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchhc
Confidence 677899999998885 347899999999999999742 345999999986543
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=4.5e-09 Score=75.60 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=36.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|.||++.+.+. .+++|||+ |+..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE------------------EEETTCCBCCCHHHHTTC--------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE------------------EEcCCCChhHHHHhhhcC--------ccCCCcCcCccCc
Confidence 456899999875542 45799999 999999999 4699999987653
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=1.3e-08 Score=95.18 Aligned_cols=49 Identities=27% Similarity=0.652 Sum_probs=39.7
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
..|+||++.+.+ +.+++|||+||..||..|+.. ....||+||..+....
T Consensus 333 ~~C~ICle~~~~------------------pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDKD------------------VKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBCC------------------EEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCCC------------------eEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCCce
Confidence 689999887644 255899999999999999873 3578999999886543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=82.59 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=42.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.+...|+||++.|.++ .+++|||+|+..||.+|+... ...||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc------------------EECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchhh
Confidence 3677999999988764 337999999999999999732 348999999987653
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=1e-07 Score=70.91 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=40.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc----CCCCCCCCcC--cccC--ccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA----EDIRDPPCPL--CLGS--LMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~----~~~~~~sCPi--Cr~~--l~~ 220 (228)
+..+|+||++.+.... .+.+.+|||.|+.+||.+|+.. .......||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ---------------MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGG---------------EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCccccccc---------------ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4568999999887653 2344579999999999999863 1123468999 9988 544
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.3e-08 Score=70.97 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=35.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|.||++.+.+. .+++|||+ |+..|+..+ ..||+||..+....
T Consensus 24 ~~~~C~IC~~~~~~~------------------~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCB------------------CCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCE------------------EEecCCCHHHHHHHhhCC--------CCCccCCceecCcE
Confidence 355799999876552 34799999 999999643 57999999886643
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.41 E-value=9.1e-08 Score=80.78 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=42.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+||++.|.++ .+++|||+|...||..|+... ..+||+|+..+...+
T Consensus 105 ~~f~CPI~~elm~DP------------------V~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCCCC------------------eECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChhh
Confidence 678999999998875 346999999999999999742 247999999887654
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.40 E-value=8.2e-08 Score=67.33 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=36.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC--h---HhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG--H---VYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CG--H---vFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
+...|.||++...+ . .++||. | .||..||++|+... .+..||+|+..|..
T Consensus 5 ~~~~CrIC~~~~~~-----------------~-l~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGN-----------------E-RFRACGCTGELENVHRSCLSTWLTIS--RNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSC-----------------C-CCCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCC-----------------c-eecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCCeeec
Confidence 56689999875211 1 146765 4 99999999999743 45789999998864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.2e-07 Score=84.59 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=43.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcC--cccCcccCC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPL--CLGSLMQVE 222 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPi--Cr~~l~~~~ 222 (228)
....+|+||++.|.++ |....|||+|+..||.+|+... ....||+ |+..+...+
T Consensus 179 ~~el~CPIcl~~f~DP-----------------Vts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEAP-----------------LISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSSE-----------------EEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccCC-----------------eeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchhh
Confidence 4677899999999884 3446899999999999999742 3468999 999876543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=1.2e-07 Score=69.34 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=35.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|.||++.+.+ +..++|||+ |+..|+..|. .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN------------------STFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc------------------EEEECCCCHHHHHHHHHhcC--------cCCCCCchhhCe
Confidence 35579999876443 356899999 9999999873 699999987654
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=4.4e-07 Score=64.61 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=36.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|.||++...+ +.+++|||+ |+..|+... ..||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQESF 60 (68)
T ss_dssp CSSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCCEE
T ss_pred CCCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhcC--------CCCCCCCcchhceE
Confidence 56789999875433 366899999 999999842 47999999886543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.18 E-value=3.7e-07 Score=64.02 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=40.4
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
..|+||++.++++ .++ +|||+|-..||++|+.+ +..||+++..+..++-
T Consensus 4 ~~CpIs~~~m~dP------------------V~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP------------------VLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE------------------EEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC------------------EEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhhc
Confidence 5799999998864 334 89999999999999983 4579999999877653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.04 E-value=4.7e-07 Score=83.06 Aligned_cols=45 Identities=22% Similarity=0.611 Sum_probs=36.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHv-FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|.||++.+.+. ..++|||+ ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~------------------v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV------------------VFIPCGHLVVCQECAPSL--------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE------------------EEETTCCEEECTTTGGGC--------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce------------------EEcCCCChhHhHHHHhcC--------CcCCCCCCCccCe
Confidence 356899999876552 45799999 999999988 4699999987643
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.99 E-value=5.2e-07 Score=83.66 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=39.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCccee--EEcCCChHhhHHHHHHHHhcCCC-------CCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAV--AVLVCGHVYHADCLEQRTSAEDI-------RDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vv--avL~CGHvFH~~CLe~wl~~~~~-------~~~sCPiCr~~l~~~ 221 (228)
....|+||...+.+.. .++.. .-..|||.||..||.+|+..... -...||+|+..+...
T Consensus 307 ~~~ECaICys~~l~~g------------~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG------------EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTC------------CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCC------------CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4568999998876521 11111 12589999999999999963211 115799999987643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.83 E-value=6.5e-06 Score=63.85 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=39.4
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
.|.+|.-++.. ..+.++|.|+|+.+|+..|..+ .+..||+|+..+...+
T Consensus 3 fC~~C~~Pi~i-----------------ygRmIPCkHvFCydCa~~~~~~---~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV-----------------YGRMIPCKHVFCYDCAILHEKK---GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE-----------------EEEEETTCCEEEHHHHHHHHHT---TCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE-----------------EeeeccccccHHHHHHHHHHhc---cCCCCcCcCCeeeeeE
Confidence 58888766554 3478899999999999999863 5678999999886654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.42 E-value=6.8e-05 Score=65.41 Aligned_cols=54 Identities=24% Similarity=0.504 Sum_probs=40.7
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCC
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 224 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~ 224 (228)
...|.||.+.+..+. .+ -.|+|.||.+|+..|+.. .....||.|+..|....+.
T Consensus 180 i~~C~iC~~iv~~g~-~C----------------~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ-SC----------------ETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCE-EC----------------SSSCCEECHHHHHHHTTT--CSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCc-cc----------------CccChHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCC
Confidence 567999988766431 11 249999999999999873 2457899999998776543
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.88 E-value=0.074 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.8
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
-.|...||..||...+......+-.||.|.....+
T Consensus 28 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 28 THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 36999999999999888776778899999865433
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.33 E-value=0.052 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=26.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RT 201 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~-wl 201 (228)
+...|.||.+.+.... +..-+.|+|.|+..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a---------------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA---------------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC---------------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc---------------eEECCcCChHHhHHHCHHHhc
Confidence 4568999986543321 223489999999999998 53
No 75
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.57 E-value=0.084 Score=34.77 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=25.2
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
-.|.-.||..||..=+.+....+-.||.|+..
T Consensus 19 d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 19 DECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 37899999999987666555567889999753
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.08 E-value=0.061 Score=38.21 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=37.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
+...|.||.+...... .+.-=.|.--||..|+..-+......+..||.|+..+...
T Consensus 17 ~~~~C~~C~~~~~~~~---------------mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDDGSP---------------MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCSSCC---------------EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCCCCC---------------EEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4567999987643211 1222369999999999876554434678899998776543
No 77
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.70 E-value=0.096 Score=39.34 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=42.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCCCCCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSGVQ 227 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~~~~Q 227 (228)
....|.||.+. .. .+---.|.-+||..||..-+......+..||.|...-..++..++|
T Consensus 24 n~~~C~vC~~~---g~---------------LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~~~~l 82 (88)
T 1fp0_A 24 SATICRVCQKP---GD---------------LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 82 (88)
T ss_dssp SSSCCSSSCSS---SC---------------CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSSTTS
T ss_pred CCCcCcCcCCC---CC---------------EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchhhccc
Confidence 45689999753 11 1122368889999999887776666788999999877766666554
No 78
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.66 E-value=0.059 Score=40.33 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
..+...|.||.+.-.... .+.-=.|.-.||..||..-+......+-.||.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~---------------ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDK---------------LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGG---------------CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCC---------------EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345678999987643222 122236999999999986665555677889999764
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.64 E-value=0.26 Score=33.93 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=36.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
.....|.||.+. .. .+.--.|.-.||..||..-+.+....+-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE---------------IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS---------------EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc---------------EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999763 11 222236888999999998766556678899999753
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.35 E-value=0.25 Score=37.17 Aligned_cols=30 Identities=30% Similarity=0.601 Sum_probs=21.3
Q ss_pred cCCChHhhHHHHHHH------------HhcCCCCCCCCcCcc
Q 027109 186 LVCGHVYHADCLEQR------------TSAEDIRDPPCPLCL 215 (228)
Q Consensus 186 L~CGHvFH~~CLe~w------------l~~~~~~~~sCPiCr 215 (228)
-.|+-|||..||.+. +.-.....-+||.|.
T Consensus 33 RvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 33 RVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp SSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred ccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 369999999999997 111112447899994
No 81
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=86.13 E-value=0.045 Score=37.50 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=38.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
....|.||.+. .. .+.--.|.-.||..|+..-+......+-.||.|......++
T Consensus 4 ~~~~C~vC~~~---g~---------------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~ 57 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57 (60)
T ss_dssp CCSSCTTTCCC---SS---------------CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTT
T ss_pred CCCCCcCCCCC---Cc---------------EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchh
Confidence 46689999763 11 22233799999999999766655567788999987655443
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.85 E-value=0.14 Score=35.35 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=36.2
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
+.....|.||.+. ..+ +.--.|.-.||..||..-+......+-.||.|....
T Consensus 6 d~~~~~C~vC~~~---g~l---------------l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GEL---------------LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSC---------------BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCE---------------EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999752 111 111258999999999977665556778899998653
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.92 E-value=0.15 Score=38.61 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=32.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
..++.|.||.+.-+... .+.=-.|+..||..||...+.........||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~---------------ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD---------------QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTT---------------SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcC---------------CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 36778999976421111 1233479999999999987654334556666553
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.66 E-value=0.13 Score=35.97 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=37.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|...-...+
T Consensus 7 ~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~ 60 (66)
T 1xwh_A 7 NEDECAVCRDG---GE---------------LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60 (66)
T ss_dssp CCCSBSSSSCC---SS---------------CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCC
T ss_pred CCCCCccCCCC---CC---------------EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccC
Confidence 56689999753 11 12223689999999999766655557788999987644433
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.95 E-value=0.093 Score=35.46 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=35.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
.....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~---------------ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC---------------CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce---------------EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356789999863 11 22234799999999999776655556788999964
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.41 E-value=0.1 Score=35.85 Aligned_cols=55 Identities=18% Similarity=0.482 Sum_probs=36.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC-CCCCCCcCcccCc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSL 218 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~-~~~~sCPiCr~~l 218 (228)
.+...|+||.+.+.+... -|.--.|..-||..|+.--....+ .....||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~--------------mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEF--------------WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSC--------------EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCC--------------EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 356689999987643321 233347898999999965433221 2568899998753
No 87
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.34 E-value=1.7 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=23.2
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 188 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 188 CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
|. .-||..|+. |......+..||.|+....+
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 66 679999998 44444567899999876543
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.94 E-value=0.36 Score=39.54 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=27.1
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
.|.-.||..|+..-+......+-.||.|+..-.
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 589999999998887766667789999987654
No 89
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.52 E-value=0.86 Score=32.61 Aligned_cols=59 Identities=19% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCcCcccCccc
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~-~~~~~sCPiCr~~l~~ 220 (228)
.++.+...| ||...+..... -|.--.|.--||..|+.--.... ......||.|+....+
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~--------------MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHF--------------MIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSC--------------EEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccCCccEE-EcCCccCCCCc--------------eEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 344455667 99887642211 23444699999999996433221 1256889999976543
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=79.02 E-value=0.33 Score=40.61 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
.|.-.||..||...+......+-.||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 58999999999988776666778999998754
No 91
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.64 E-value=0.59 Score=35.81 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.7
Q ss_pred cCC-ChHhhHHHHHHHHhcCCCCCCCCcCcccCcccCCC
Q 027109 186 LVC-GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 223 (228)
Q Consensus 186 L~C-GHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~~ 223 (228)
+.| -|.++..||..+|. ....||||...+..+..
T Consensus 42 V~C~dHYLCl~CLtlmL~----~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 42 VECNNHYLCLNCLTLLLS----VSNRCPICKMPLPTKLR 76 (99)
T ss_dssp EECSSCEEEHHHHHHTCS----SSSEETTTTEECCCCSC
T ss_pred eeecchhhHHHHHHHHHh----hccCCcccCCcCCccee
Confidence 345 79999999999998 55789999999987764
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.65 E-value=2.6 Score=31.89 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=40.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
..++|.||-+.+.... .++ ..||.-.|+--.+..|.+--..+ .+..||.|+..|.
T Consensus 15 ~~qiCqiCGD~VG~~~----------~Ge-~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTV----------EGD-LFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCS----------SSS-BCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCC----------CCC-EEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 4579999988754321 122 24566788888899999987664 5678999999986
No 93
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.96 E-value=1.2 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=23.9
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 188 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 188 CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
|. .-||..|+. |......+..||.|+..-..+
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 69 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSSC
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccccc
Confidence 66 689999998 554555778999998765443
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=74.09 E-value=0.86 Score=37.87 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.8
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
-.|--+||..|+..=+......+..||.|+..-.
T Consensus 18 d~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 18 NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp TTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 3688999999998766655567789999987643
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.13 E-value=2.6 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=30.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH---HHhcCCCCCCCCcCcc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ---RTSAEDIRDPPCPLCL 215 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~---wl~~~~~~~~sCPiCr 215 (228)
..+|.+|+..=. .+.. ......+.=-.|+..||..||.. ........+-.||-|+
T Consensus 5 ~~~C~~C~~~~~--------~~~~-g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKE--------QNRE-KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTT--------CCTT-SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchh--------hCcC-CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457999975421 1111 11122344457999999999953 2221223566677664
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.68 E-value=0.28 Score=33.73 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=36.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc--C-CCCCCCCcCcccCccc
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA--E-DIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~--~-~~~~~sCPiCr~~l~~ 220 (228)
.....|.||.+...+.. ...+---.|.-.||..|+..-+.. . ...+-.||.|......
T Consensus 4 ~~~~~C~vC~~~~~~~~-------------~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAP-------------NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTT-------------BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 35678999986532211 112223478999999999875432 1 3467889999866443
No 97
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.62 E-value=0.68 Score=32.79 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=24.6
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCcCcccC
Q 027109 187 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLGS 217 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~-~~sCPiCr~~ 217 (228)
.|.-.||..||..-|.+.... +-.||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 688999999999766655555 7899999753
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.41 E-value=0.34 Score=36.59 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.9
Q ss_pred eEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 183 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 183 vavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
+.--.|...||..||..-+......+..||.|..-
T Consensus 70 l~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 LVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp EECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred eECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 34457999999999997766555567889999754
No 99
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.90 E-value=0.55 Score=34.08 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=24.0
Q ss_pred CCChHhhHHHHHHHHhcCCCCC-CCCcCccc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRD-PPCPLCLG 216 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~-~sCPiCr~ 216 (228)
.|.-.||..||..-|......+ -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6899999999998776555555 78999975
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.56 E-value=0.55 Score=33.99 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCcCccc
Q 027109 187 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLG 216 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~-~~sCPiCr~ 216 (228)
.|...||..||..-|...... +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 789999999999766655555 789999975
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.51 E-value=1.3 Score=32.57 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
.+...|.||.+.-.... ...+.--.|.-.||..|+..-+ ....+..||.|......+
T Consensus 23 ~~~~~C~vC~~~~s~~~-------------~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNS-------------NVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSE-------------EEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCC-------------CCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchh
Confidence 35678999986421110 0012223688899999998643 334678999997654433
No 102
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=69.05 E-value=0.23 Score=38.11 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=28.3
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcccC
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 221 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~ 221 (228)
-.|...||..||..-+......+-.||.|...+..+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 379999999999976665556778899998766543
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.33 E-value=0.76 Score=35.00 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=25.7
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
-.|...||..||..-+.+....+-.||.|+.
T Consensus 81 d~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 81 DSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3699999999998877766667789999975
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.77 E-value=0.26 Score=36.39 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCChHhhHHHHHHHHhc----CCCCCCCCcCcccCcccCC
Q 027109 187 VCGHVYHADCLEQRTSA----EDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~----~~~~~~sCPiCr~~l~~~~ 222 (228)
.|...||..|+..-+.. ....+..|+.|......+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 68999999999976642 4457789999987655443
No 105
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.37 E-value=4.8 Score=37.26 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=26.7
Q ss_pred eEEcCCChH--hhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 183 VAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 183 vavL~CGHv--FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
++-..|.|+ |-++=+.++..+ .....||+|.+.+...+
T Consensus 263 vRg~~C~HlQCFDl~sfL~~~~~--~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 263 SKSINCKHLQCFDALWFLHSQLQ--IPTWQCPVCQIDIALEN 302 (371)
T ss_dssp EEETTCCSSCCEEHHHHHHHHHH--SCCCBCTTTCCBCCGGG
T ss_pred CcCCcCCCcceECHHHHHHHhhc--CCceeCCCCCcccCHHH
Confidence 466789998 666555555443 36688999998875543
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.01 E-value=0.59 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=34.9
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh---cC----CCCCCCCcCcccCcc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS---AE----DIRDPPCPLCLGSLM 219 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~---~~----~~~~~sCPiCr~~l~ 219 (228)
..|+||.+.+.+.+. +..-+.--.|..-||..|+.---. .. +.....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~-----------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDY-----------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCT-----------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCccc-----------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999998877642 001223347999999999843210 00 012578999987644
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.76 E-value=1.6 Score=30.86 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=32.7
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-----CCCCCCCcCcccCccc
Q 027109 152 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-----DIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 152 ~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~-----~~~~~sCPiCr~~l~~ 220 (228)
...| ||.+...... .|.--.|.--||..|+.--.... ......||.|+....+
T Consensus 16 ~~~C-~C~~~~~~~~---------------MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF---------------MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSC---------------EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCC---------------EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 4456 8987654321 22334699999999985322110 1256889999876544
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.49 E-value=8.4 Score=30.97 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCChHhhHHHHHHHHh-----c--CCCCCCCCcCcccC
Q 027109 187 VCGHVYHADCLEQRTS-----A--EDIRDPPCPLCLGS 217 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~-----~--~~~~~~sCPiCr~~ 217 (228)
.|--+||..||..-+. + ....+..||+|...
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 7999999999997653 1 24567899999743
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.81 E-value=1.9 Score=32.19 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=22.1
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
-.|.-.||..|+..-+... .....||.|+..
T Consensus 46 d~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 46 DKCSVWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp TTTCBEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred CCCCCcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 4699999999997543322 235899999743
No 110
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.79 E-value=1.2 Score=35.93 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=32.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc-CCCCCCCCcCcccC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-EDIRDPPCPLCLGS 217 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~-~~~~~~sCPiCr~~ 217 (228)
+...| ||.....+... .+.--.|.-.||..|+.--... .......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~--------------mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKF--------------YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSC--------------EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCC--------------EeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45578 99877543211 2233479999999999543221 12356889999864
No 111
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.36 E-value=6.6 Score=36.19 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=27.4
Q ss_pred eEEcCCChH--hhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 183 VAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 183 vavL~CGHv--FH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
++-..|.|+ |-++=+.++.... ....||+|.+.+...+
T Consensus 229 ~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 229 CRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAAYES 268 (360)
T ss_dssp EEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCCGGG
T ss_pred CcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccCHHH
Confidence 466789998 7666666655433 6688999999876543
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.64 E-value=3.2 Score=31.85 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=20.3
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 187 VCGHVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
.|--.||..||. |......+-.||-|.
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCC
Confidence 477899999998 555555667788665
No 113
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=56.47 E-value=0.53 Score=31.26 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=29.9
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcCcc
Q 027109 154 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCL 215 (228)
Q Consensus 154 ~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~~~~~~~~sCPiCr 215 (228)
.|.||.+++.+... -|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~--------------mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVD--------------WVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCC--------------EEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCc--------------EEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899887654322 22334 68888999998654322112567899985
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.74 E-value=1.5 Score=30.75 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=34.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
....| ||......... -|.--.|.--||..|+.--..........||.|+....+
T Consensus 15 ~~~~C-~C~~~~~~g~~--------------mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGER--------------MLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSC--------------EEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCc--------------EEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 45678 79876433211 223346888899999875433233466889999865443
No 115
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=53.51 E-value=7.1 Score=40.34 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHHhcCCCCCCCCcCcccCcccCC
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 222 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~~~ 222 (228)
+...|+|-.+.+.++ .+++-| +.|-..+|++|+. .+++||+=+..+...+
T Consensus 890 ~~F~cPIs~~lM~DP------------------VilpsG~~TydR~~I~~wl~----~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP------------------VILPASKMNIDRSTIKAHLL----SDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhCC------------------eEcCCCCEEECHHHHHHHHh----cCCCCCCCCCCCCccc
Confidence 677899999888875 457887 5899999999998 4679999888876543
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.45 E-value=1.8 Score=37.53 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCcCcccC
Q 027109 187 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLGS 217 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~~~~~-~~sCPiCr~~ 217 (228)
.|.-.||..||..=|...... +-.||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 689999999999776655555 7889999753
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=49.48 E-value=13 Score=27.83 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=29.6
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~ 202 (228)
......|.+|++-|++...+. ---.=+|-|+..|-...+.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQ--------------CPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQ--------------CPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEE--------------CSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceee--------------CCCccCCeeeccccHHHHH
Confidence 445678999999999876421 1123489999999999875
No 118
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.60 E-value=5.8 Score=28.19 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCChHhhHHHHHHHHhc-----CCCCCCCCcCcccCcc
Q 027109 187 VCGHVYHADCLEQRTSA-----EDIRDPPCPLCLGSLM 219 (228)
Q Consensus 187 ~CGHvFH~~CLe~wl~~-----~~~~~~sCPiCr~~l~ 219 (228)
.|..-||..|+----.. .......||.|+..-.
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 69899999999643221 1124688999987643
No 119
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.56 E-value=4.4 Score=28.70 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 150 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 150 ~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
.....|.||.+.-.+.. ...+.-=.|.-.||..|+..-. ....+-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~-------------~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNS-------------NVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSS-------------SCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 36778999976421110 0112223788999999998542 33467889999753
No 120
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.75 E-value=3.8 Score=25.49 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.2
Q ss_pred CCCCcCcccCccc
Q 027109 208 DPPCPLCLGSLMQ 220 (228)
Q Consensus 208 ~~sCPiCr~~l~~ 220 (228)
...||+|++.+..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3789999988753
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=46.38 E-value=16 Score=28.95 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=23.1
Q ss_pred CCChHhhHHHHHHH-----HhcC--CCCCCCCcCcccC
Q 027109 187 VCGHVYHADCLEQR-----TSAE--DIRDPPCPLCLGS 217 (228)
Q Consensus 187 ~CGHvFH~~CLe~w-----l~~~--~~~~~sCPiCr~~ 217 (228)
.|-.+||..||..- +.++ +..+-.|++|+-.
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 68999999999975 2222 3567899999653
No 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.10 E-value=1.8 Score=29.59 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=21.0
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 188 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 188 CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
|. .-||..|+. +......+..||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 5555557789999975
No 123
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=44.20 E-value=8.7 Score=26.64 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=31.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHh------cCCCCCCCCcCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCL 215 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~------~~~~~~~sCPiCr 215 (228)
....|++|.+++..... -|.-- .|.--||..|+.---. +.......||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~--------------mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQD--------------AILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSC--------------EEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCC--------------eEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 56689999998765432 22333 7888999999843321 1122357798885
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=41.98 E-value=2.4 Score=28.95 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=20.9
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 188 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 188 CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
|. .-||..|+. +......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999999 5544456789999975
No 125
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.73 E-value=14 Score=28.44 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=17.8
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcCcccCccc
Q 027109 186 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 220 (228)
Q Consensus 186 L~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~~ 220 (228)
..||++| . +.-.....||.|+.....
T Consensus 71 ~~CG~~F----~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVF----K-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBC----C-----CCSSCCSSCSSSCCCCBC
T ss_pred hhCcCee----c-----ccCCCCCCCcCCCCCccC
Confidence 6899999 1 111244779999988644
No 126
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=37.21 E-value=3.1 Score=28.65 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=21.1
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcCcccC
Q 027109 188 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGS 217 (228)
Q Consensus 188 CG-HvFH~~CLe~wl~~~~~~~~sCPiCr~~ 217 (228)
|. .-||..|+. +......+..||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999998 44444567889999753
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.47 E-value=0.9 Score=34.55 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=33.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHh------cCCCCCCCCcCcccCcc
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL-~CGHvFH~~CLe~wl~------~~~~~~~sCPiCr~~l~ 219 (228)
..|+||.+++.....+ +.-= .|.--||..|+.--.. ........||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~m--------------i~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDA--------------ILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCE--------------EECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCE--------------EEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4799999887543211 1111 5888899999853321 01225588999987644
No 128
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.58 E-value=4.4 Score=28.33 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=31.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
+...| ||........ -|.--.|.--||..|+.--... ......||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~---------------MIqCd~C~~WfH~~Cvgi~~~~-~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRP---------------MIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCC---------------EEECTTTCCEEETTTTTCCTTS-CCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCC---------------EEECCCCCccccccccCcCccc-CCCcEECCCCCC
Confidence 45567 9987654221 2333469999999999754321 224678999975
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.30 E-value=8.4 Score=34.60 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC---CCCCCCCcCcccCc
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE---DIRDPPCPLCLGSL 218 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~---~~~~~sCPiCr~~l 218 (228)
|+.+...|.+|...|.---- .-.-..||++||..|...++... ......|-.|-..+
T Consensus 371 ~~~~~~~c~~c~~~f~~~~r--------------~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 371 PVTHVMMCMNCGCDFSLTLR--------------RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcccCCcCCCcCCCCCCcch--------------hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34456689999988753210 01224799999999998876421 11234577776554
No 130
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.96 E-value=16 Score=24.74 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=25.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCcccCcc
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 219 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~~l~ 219 (228)
....|..|.+.+.... .+..-|.+||.+|+ .|-.|...|.
T Consensus 8 ~~~~C~~C~~~I~~~~-----------------~v~a~~~~~H~~CF------------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-----------------KVSSLGKDWHKFCL------------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTT-----------------EEEETTEEEETTTC------------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCe-----------------EEEECCeEeeCCCC------------CCCCCCCccC
Confidence 3457999988766432 12345788887773 3666666554
No 131
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.85 E-value=4 Score=30.40 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.5
Q ss_pred hHhhHHHHHHHHhcCCCCCCCCcC-cccC
Q 027109 190 HVYHADCLEQRTSAEDIRDPPCPL-CLGS 217 (228)
Q Consensus 190 HvFH~~CLe~wl~~~~~~~~sCPi-Cr~~ 217 (228)
--||..|+. |......+..||. |+..
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcch
Confidence 679999997 4444446789999 9753
No 132
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.90 E-value=8.5 Score=30.04 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=28.4
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcCccc
Q 027109 146 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 216 (228)
Q Consensus 146 ~Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~~~~~sCPiCr~ 216 (228)
.+|+.+...|.+|...|.--.- .-.-..||.+|+..|...... ....|-.|-.
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~R--------------kHHCR~CG~ifC~~Cs~~~~~----~vRVC~~C~~ 65 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTAR--------------KQTCLDCKKNFCMTCSSQVGN----GPRLCLLCQR 65 (120)
T ss_dssp -------CCCTTTCCCCSSGGG--------------CEECTTTCCEECGGGEEC--------CCEEHHHHH
T ss_pred CcCccccCcccCcCCccccccc--------------cccCCCCCCeeCHHHhCCCCC----CceECHHHHH
Confidence 3566777899999988753210 112358999999999877655 2345666643
No 133
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.94 E-value=7.9 Score=22.90 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=18.4
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 153 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 153 ~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
..|+.|.+..-... .+..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~E-----------------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE-----------------KVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG-----------------CCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecce-----------------eEEECCeEecccCC
Confidence 47999987754332 22345888898873
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.68 E-value=16 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=27.0
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 027109 149 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 149 ~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~ 202 (228)
+.+...|.+|...|.--. ..-.-..||++|+..|...++.
T Consensus 17 d~~~~~C~~C~~~F~~~~--------------RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTK--------------RRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp GGGCCBCTTTCCBCCSSS--------------CCEECTTTCCEECGGGSCEEEE
T ss_pred cccCCcCcCCCCcccchh--------------hCccccCCCCEECCcccCCeee
Confidence 345567999998875311 0112357999999999988754
No 135
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.56 E-value=12 Score=26.77 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=27.1
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 201 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl 201 (228)
|+.+...|.+|...|.--.- .-.--.||.+|+..|....+
T Consensus 17 pd~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVR--------------RHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSC--------------CEECTTTCCEECTGGGCCEE
T ss_pred cCCCCCCCcCcCCccccchh--------------cccccCCCcEEChHHhCCeE
Confidence 34456689999988753210 11225799999999988764
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.17 E-value=12 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=18.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
....|..|.+.+... + +..-+.+||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~----------------~--~~a~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV----------------F--VKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCSS----------------C--EECSSCEECTTTT
T ss_pred CCCccccCCCCccCc----------------E--EEECcceeCcCcC
Confidence 456799998765542 1 2345777887764
No 137
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=9.6 Score=26.76 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=20.2
Q ss_pred hHhhHHHHHHHHhcCCCCCCCCcCcccCc
Q 027109 190 HVYHADCLEQRTSAEDIRDPPCPLCLGSL 218 (228)
Q Consensus 190 HvFH~~CLe~wl~~~~~~~~sCPiCr~~l 218 (228)
.-||..|+. +.........||.|+...
T Consensus 30 ~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 30 EWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred cCCcccccc--cCcCCCCCEECCCCCccc
Confidence 679999998 343445678899998654
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.51 E-value=18 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 027109 147 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 202 (228)
Q Consensus 147 Sp~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~ 202 (228)
-|+.+...|.+|...|.--.- .-.--.||.+|+..|....+.
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R--------------rHHCR~CG~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK--------------RRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC--------------CEECSSSCCEECTTTSCEEEC
T ss_pred ccCCCCCcCcCcCCccccchh--------------hhhhcCCCcEEChhhcCCcee
Confidence 345566689999988743110 112257999999999876543
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.90 E-value=12 Score=28.91 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=26.9
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 201 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl 201 (228)
|+.+...|.+|...|.--.- .-.--.||++|+..|.....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVR--------------RHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSC--------------CEECTTTCCEECGGGSCEEE
T ss_pred cCCCCCCCcCcCCccccccc--------------cccCCCCCeEEChHHhCCcc
Confidence 44455689999988753210 11225799999999987764
No 140
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.88 E-value=14 Score=26.39 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC--CCCCCCcCcccCcc
Q 027109 148 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED--IRDPPCPLCLGSLM 219 (228)
Q Consensus 148 p~~~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl~~~~--~~~~sCPiCr~~l~ 219 (228)
|+.+...|.+|...|.--.- .-.--.||.+|+..|....+.... ...-.|-.|-..+.
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRR--------------KHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBC--------------CEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCccCCcccCcCCcccCccc--------------cccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 33455679999988763210 112257999999999987643211 12234666655443
No 141
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.40 E-value=35 Score=23.84 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=18.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
....|..|.+.+... + +..-+.+||.+|+
T Consensus 24 ~~~~C~~C~~~I~~~----------------~--~~a~~~~~H~~CF 52 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA----------------V--VKARDKYRHPECF 52 (89)
T ss_dssp SCCBCTTTCCBCCSC----------------C--EESSSCEECTTTC
T ss_pred cCCCcccCCCEeccc----------------E--EEECCceECccCC
Confidence 345799998766542 1 2346778887773
No 142
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.32 E-value=21 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=24.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 201 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CLe~wl 201 (228)
+...|.+|...|.--.- .-.-..||.+|+..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~R--------------rHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKK--------------EYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCSBCTTTCCBCCSSSC--------------EEECSSSCCEEETTTSCEEE
T ss_pred cCCCCcCcCCcccCccc--------------cccCCCCCCEEChhHcCCce
Confidence 45579999987753210 11224789999888887654
No 143
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.03 E-value=21 Score=24.85 Aligned_cols=30 Identities=27% Similarity=0.662 Sum_probs=19.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
....|..|.+.+..... +..=+.+||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~e~-----------------v~a~~~~wH~~CF 43 (82)
T 2co8_A 14 AGDLCALCGEHLYVLER-----------------LCVNGHFFHRSCF 43 (82)
T ss_dssp SSCBCSSSCCBCCTTTB-----------------CCBTTBCCBTTTC
T ss_pred CCCCCcccCCCcccceE-----------------EEECCCeeCCCcC
Confidence 45679999887654321 1245778888874
No 144
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=17 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.504 Sum_probs=18.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 027109 151 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 197 (228)
Q Consensus 151 ~~~~C~IC~e~L~~~~~~~~~~~~~~~~e~~vvavL~CGHvFH~~CL 197 (228)
....|..|.+.+.... . +..-+..||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~~---------------~--v~a~~~~wH~~CF 43 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ---------------S--LLALDKQWHVSCF 43 (80)
T ss_dssp SCSCCTTTCCCCSSSC---------------C--EEETTEEECTTTC
T ss_pred CCCCCcCcCCeeCCCe---------------E--EEECCcccccccC
Confidence 4567999988765432 1 1234778887763
No 145
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.74 E-value=15 Score=26.39 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=13.1
Q ss_pred cCCChHhhHHHHHHH
Q 027109 186 LVCGHVYHADCLEQR 200 (228)
Q Consensus 186 L~CGHvFH~~CLe~w 200 (228)
..||+.|+..|-..|
T Consensus 47 ~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 47 PQCHQTFCVRCKRQW 61 (86)
T ss_dssp TTTCCEECSSSCSBC
T ss_pred CCCCCccccccCCch
Confidence 359999999999888
Done!