BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027111
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 30/172 (17%)
Query: 12 WVLRHGKSIPNEKGLIVSSLENGTRREYQLASEGVDQARLAGELFLKELNENNIPLENVR 71
++ RHG++ N +G I ++G L+S G A A F++E N L+++R
Sbjct: 250 YLCRHGENEHNLQGRIGG--DSG------LSSRGKKFAS-ALSKFVEEQN-----LKDLR 295
Query: 72 ICYSPFSRTTHTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELLS---HDKYPEIWA 128
+ S T TAE L LP+E Q K + ++ G EL D YPE +A
Sbjct: 296 VWTSQLKSTIQTAEA----LRLPYE--QWKALNEIDA---GVCEELTYEEIRDTYPEEYA 346
Query: 129 LDEKDP-FMRPEGGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQIL 179
L E+D + R GES D+V RL + MELE Q +LV+ H L+ L
Sbjct: 347 LREQDKYYYRYPTGESYQDLVQRLEPVI--MELERQE-NVLVICHQAVLRCL 395
>pdb|2A6P|A Chain A, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
pdb|2A6P|B Chain B, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
Length = 208
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 13 VLRHGKSIPNEKGLIVSSLENGTRREYQLASEGVDQARLAGELFLKELNENNIPLENVRI 72
+LRHG++ + G GT E +L G QA LAG+L + L++ +
Sbjct: 15 LLRHGETAWSTLG----RHTGGT--EVELTDTGRTQAELAGQLL------GELELDDPIV 62
Query: 73 CYSPFSRTTHTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELLSHDKYPEIWALDEK 132
SP RT TA++ +N +V L E +G S+E L+ + E E
Sbjct: 63 ICSPRRRTLDTAKLAGLTVN--------EVTGLLAEWDYG-SYEGLTTPQIRE----SEP 109
Query: 133 DPFMRPEG---GESVNDVVSRLATAMAAMELEFQGCAILVVSHG 173
D + G GESV V R +A+A +L VSHG
Sbjct: 110 DWLVWTHGCPAGESVAQVNDRADSAVALALEHMSSRDVLFVSHG 153
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 67 LENVRICYSPFSRTTHTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELLSHDKYPEI 126
+E I S R TAE+V +P E LRE G +E +HD EI
Sbjct: 46 VELAAIYTSTSGRALETAEIVRGGRLIPIYQD-----ERLREIHLG-DWEGKTHD---EI 96
Query: 127 WALD--EKDPFMR------PEGGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQI 178
+D D F + P+ GE DV R A+ ++ +G +L+V+HG +
Sbjct: 97 RQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHG---VV 153
Query: 179 LQTLLNAVK 187
L+TL+ A K
Sbjct: 154 LKTLMAAFK 162
>pdb|1UJB|A Chain A, Structure Of The Protein Histidine Phosphatase Sixa
pdb|1UJC|A Chain A, Structure Of The Protein Histidine Phosphatase Sixa
Complexed With Tungstate
Length = 161
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 10 KYWVLRHGKSIPNEKGLIVSSLENGTRREYQLASEGVDQARLAGELFLKELNENNIPLEN 69
+ +++RHG + +L+ + L + G D++RL L + +E
Sbjct: 2 QVFIMRHGDA----------ALDAASDSVRPLTTNGCDESRLMANW----LKGQKVEIE- 46
Query: 70 VRICYSPFSRTTHTAEVVASVLNLP 94
R+ SPF R T E V LNLP
Sbjct: 47 -RVLVSPFLRAEQTLEEVGDCLNLP 70
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 67 LENVRICYSPFSRTTHTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELLSHDKYPEI 126
+E I S R TAE+V +P E LRE G +E +HD EI
Sbjct: 46 VELAAIYTSTSGRALETAEIVRGGRLIPIYQD-----ERLREIHLG-DWEGKTHD---EI 96
Query: 127 WALD--EKDPFMR------PEGGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQI 178
+D D F + P+ GE DV R A+ ++ +G +L+V+HG +
Sbjct: 97 RQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHG---VV 153
Query: 179 LQTLLNAVK 187
L+TL+ A K
Sbjct: 154 LKTLMAAFK 162
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG VS DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG +S DP LQ V +P N
Sbjct: 173 GGNGINDSLKEIEGSFQALQRSCQGREDFKISIHDPFAALQKAQKGVTAWDDPYKGNFGQ 232
Query: 200 RIETVRVH 207
+ + H
Sbjct: 233 LMALKQAH 240
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 140 GGESVNDVVSRLATAMAAMELEFQGCAILVVSHGDPLQILQTLLNAVKQVTEPNCDNLAS 199
GG +ND + + + A++ QG +S DP LQ V +P N
Sbjct: 196 GGNGINDSLKEIEGSFQALQRSCQGREDFKISIHDPFAALQKAQKGVTAWDDPYKGNFGQ 255
Query: 200 RIETVRVH 207
+ + H
Sbjct: 256 LMALKQAH 263
>pdb|3DCY|A Chain A, Crystal Structure A Tp53-Induced Glycolysis And Apoptosis
Regulator Protein From Homo Sapiens
Length = 275
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 13 VLRHGKSIPNEKGLIVSSLENGTRREYQLASEGVDQARLAGELFLKELNENNIPLENVRI 72
V+RHG++ N++ +I G + L+ G QA AG I L NV+
Sbjct: 13 VVRHGETRFNKEKII-----QGQGVDEPLSETGFKQAAAAG-----------IFLNNVKF 56
Query: 73 CYSPFSRTTHTAEVVASVLNLPFEGPQCKVMED--LRERFFGPSFELLSHDKYPEIWALD 130
++ S T + +L V D LRER +G + A
Sbjct: 57 THAFSSDLXRTKQTXHGILERSKFCKDXTVKYDSRLRERKYGVVEGKALSELRAXAKAAR 116
Query: 131 EKDPFMRPEGGESVNDVVSR 150
E+ P P GGE+++ V R
Sbjct: 117 EECPVFTPPGGETLDQVKXR 136
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 81 THTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELLSHDKYPEIWALDEKDPFMRPEG 140
+H AE+VAS + ++++R + G L ++ L E P RP
Sbjct: 2 SHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTL-----QMTTLRELPPEERPAA 56
Query: 141 GESVNDVVSRLATAMAAMELEFQGCAI 167
G +N+ ++ A+ A + E + A+
Sbjct: 57 GAVINEAKEQVQQALNARKAELESAAL 83
>pdb|1KU0|A Chain A, Structure Of The Bacillus Stearothermophilus L1 Lipase
pdb|1KU0|B Chain B, Structure Of The Bacillus Stearothermophilus L1 Lipase
Length = 388
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 18/168 (10%)
Query: 15 RHGKSIPNEKGLIVSSLENGTRREYQLASEGVDQARLAGELFLKELNENNIPLENVRICY 74
R G++ P ++ L+ G R S+G AR+ L E + +
Sbjct: 89 RFGRTYPG----LLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSL 144
Query: 75 SPFSRTTHTAEVVASVLNLPFEGPQCKVMEDLRERFFGPSFELL------SHDKY-PEIW 127
SP H + + + P +G M D +RFF +L S+ Y EI+
Sbjct: 145 SPLFEGGHRFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIY 204
Query: 128 ALDEKDPFMRPEGGESVNDVVSRL-------ATAMAAMELEFQGCAIL 168
+R E GES + RL +T A +L G L
Sbjct: 205 DFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTARYDLSVPGAETL 252
>pdb|3OYX|A Chain A, Haloferax Volcanii Malate Synthase MagnesiumGLYOXYLATE
COMPLEX
pdb|3OYZ|A Chain A, Haloferax Volcanii Malate Synthase PyruvateACETYL-Coa
Ternary Complex
pdb|3PUG|A Chain A, Haloferax Volcanii Malate Synthase Native At 3mm
Glyoxylate
Length = 433
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 122 KYPEIWALDEKD---PFMRPEGGESVNDVVS 149
+ P++W D +D P MR EG E++ +V+S
Sbjct: 41 QAPDVWVPDNEDATAPSMRDEGAENIVEVIS 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,811
Number of Sequences: 62578
Number of extensions: 248486
Number of successful extensions: 575
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 21
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)