Query 027112
Match_columns 228
No_of_seqs 137 out of 1264
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02364 L-ascorbate peroxidas 100.0 2E-68 4.3E-73 467.3 20.8 227 1-228 1-250 (250)
2 PLN02879 L-ascorbate peroxidas 100.0 8.9E-68 1.9E-72 462.8 20.9 226 1-227 2-249 (251)
3 PLN02608 L-ascorbate peroxidas 100.0 8.8E-67 1.9E-71 463.7 20.9 222 5-227 3-246 (289)
4 cd00691 ascorbate_peroxidase A 100.0 8.2E-64 1.8E-68 439.3 20.0 210 8-227 12-252 (253)
5 PLN03030 cationic peroxidase; 100.0 2.4E-64 5.3E-69 453.9 15.1 207 2-227 31-310 (324)
6 cd00693 secretory_peroxidase H 100.0 1.2E-62 2.5E-67 441.0 16.7 207 2-227 8-285 (298)
7 cd00692 ligninase Ligninase an 100.0 2.1E-56 4.6E-61 403.5 19.3 206 20-227 21-277 (328)
8 cd00314 plant_peroxidase_like 100.0 2.4E-52 5.2E-57 366.6 17.5 205 11-222 2-255 (255)
9 PF00141 peroxidase: Peroxidas 100.0 7.1E-52 1.5E-56 359.5 6.8 177 12-205 1-230 (230)
10 cd00649 catalase_peroxidase_1 100.0 4.9E-50 1.1E-54 368.2 15.5 223 3-226 31-396 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.8E-47 8.3E-52 368.5 15.2 216 7-223 45-398 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2E-44 4.3E-49 348.1 15.8 218 4-222 44-403 (726)
13 cd08200 catalase_peroxidase_2 100.0 1.6E-42 3.4E-47 307.4 17.2 198 26-224 23-296 (297)
14 cd08201 plant_peroxidase_like_ 100.0 5.5E-43 1.2E-47 306.8 12.0 188 27-222 36-264 (264)
15 TIGR00198 cat_per_HPI catalase 100.0 3.7E-38 8.1E-43 306.0 17.4 208 13-224 431-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.8E-37 6E-42 298.7 17.7 198 26-224 448-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 4.7E-31 1E-35 246.3 13.7 218 7-225 60-417 (730)
18 COG0376 KatG Catalase (peroxid 99.7 3E-17 6.6E-22 154.2 12.2 198 26-224 458-725 (730)
19 cd00957 Transaldolase_TalAB Tr 40.4 47 0.001 30.4 4.6 96 77-175 137-253 (313)
20 PRK12346 transaldolase A; Prov 30.9 41 0.00089 30.9 2.6 95 77-174 138-253 (316)
21 PF06163 DUF977: Bacterial pro 30.3 1E+02 0.0022 24.6 4.4 35 140-175 16-53 (127)
22 KOG0400 40S ribosomal protein 28.8 27 0.00059 28.2 0.9 32 136-168 31-63 (151)
23 PTZ00411 transaldolase-like pr 27.3 44 0.00095 30.9 2.2 67 108-175 180-265 (333)
24 PRK12309 transaldolase/EF-hand 25.6 77 0.0017 29.9 3.5 95 77-174 143-258 (391)
25 PF09533 DUF2380: Predicted li 25.0 59 0.0013 27.6 2.3 34 137-175 106-139 (188)
26 cd00956 Transaldolase_FSA Tran 24.8 69 0.0015 27.4 2.8 76 108-205 121-208 (211)
27 PRK05269 transaldolase B; Prov 23.7 44 0.00095 30.7 1.4 66 108-174 170-254 (318)
28 PRK05264 transcriptional repre 23.6 68 0.0015 24.3 2.2 31 188-218 35-67 (105)
29 cd00490 Met_repressor_MetJ Met 23.5 69 0.0015 24.1 2.2 31 188-218 34-66 (103)
30 cd07922 CarBa CarBa is the A s 23.4 47 0.001 24.4 1.3 36 189-227 13-59 (81)
31 TIGR00874 talAB transaldolase. 21.2 65 0.0014 29.6 2.0 95 77-174 137-252 (317)
No 1
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2e-68 Score=467.29 Aligned_cols=227 Identities=81% Similarity=1.289 Sum_probs=218.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccChHhhhccccCchHHHHHh
Q 027112 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (228)
Q Consensus 1 ~~~~cp~~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (228)
|++.||.+.+.+++++++++++|++++.++.++|.+|||+||||++||.....|||||||++.+|+++++|.||.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHh-cCCChhhhHhh
Q 027112 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (228)
Q Consensus 81 i~~iK~~~~~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~-~Gl~~~elVaL 159 (228)
|++||+++++|||||||+||||+||+++|||.|+|++||+|++++.++++||.|+.++++|++.| +. +|||++|||+|
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999988889999999999999999 86 69999999999
Q ss_pred cccccchhh----------------------hhhhhhccCCCcccccccccccCCcchHHHHHHHhhChHHHHHHHHHHH
Q 027112 160 SGGHTLVSA----------------------KLELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAH 217 (228)
Q Consensus 160 ~GaHtiG~~----------------------y~~ll~~~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am 217 (228)
+||||||++ |++++.+..+|+++|+||++|+.|++|+++|+.||.|++.|+++|++||
T Consensus 160 sGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am 239 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAH 239 (250)
T ss_pred ecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHH
Confidence 999999985 8999976557999899999999999999999999999999999999999
Q ss_pred HHHhhCCCCCC
Q 027112 218 LKLSELGFAEA 228 (228)
Q Consensus 218 ~Km~~igv~~~ 228 (228)
+||+++|+.++
T Consensus 240 ~Km~~lg~~~~ 250 (250)
T PLN02364 240 MKLSELGFADA 250 (250)
T ss_pred HHHHccCCCCC
Confidence 99999999874
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=8.9e-68 Score=462.77 Aligned_cols=226 Identities=76% Similarity=1.254 Sum_probs=219.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccChHhhhccccCchHHHHHh
Q 027112 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (228)
Q Consensus 1 ~~~~cp~~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (228)
|.+.||.+-+.+++++++++++|.++++++.++|.+|||+||||++||..+++|||||||++.+|+++|+|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhhHhhc
Q 027112 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (228)
Q Consensus 81 i~~iK~~~~~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~ 160 (228)
|++||+++++|||||||+||+++||+++|||.|+|++||+|+..++++++||.|+.++++|++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999 99999999999999
Q ss_pred ccccchhh----------------------hhhhhhccCCCcccccccccccCCcchHHHHHHHhhChHHHHHHHHHHHH
Q 027112 161 GGHTLVSA----------------------KLELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHL 218 (228)
Q Consensus 161 GaHtiG~~----------------------y~~ll~~~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~ 218 (228)
||||||++ |++++.++.+|+++|+||++|+.|++|+++|++||+||++|+++|+.||+
T Consensus 161 GaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~ 240 (251)
T PLN02879 161 GGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHL 240 (251)
T ss_pred ccccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999986 88998876689998999999999999999999999999999999999999
Q ss_pred HHhhCCCCC
Q 027112 219 KLSELGFAE 227 (228)
Q Consensus 219 Km~~igv~~ 227 (228)
||+++||.+
T Consensus 241 KL~~lg~~~ 249 (251)
T PLN02879 241 KLSELGFAD 249 (251)
T ss_pred HHHccCCCC
Confidence 999999986
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=8.8e-67 Score=463.72 Aligned_cols=222 Identities=68% Similarity=1.091 Sum_probs=212.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccChHhhhccccCchHHHHHhHHHH
Q 027112 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (228)
Q Consensus 5 cp~~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (228)
.|.+...+-..|+.+|++|+++++++.++|.+|||+||||++||.+++.|||||||++.+|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 47778888899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhhHhhccccc
Q 027112 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (228)
Q Consensus 85 K~~~~~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~GaHt 164 (228)
|+++|+|||||||+||||+||+++|||.|+|++||+|++.++++++||+|+.+++++++.| +++||+++|||+|+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred chhh----------------------hhhhhhccCCCcccccccccccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhh
Q 027112 165 LVSA----------------------KLELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE 222 (228)
Q Consensus 165 iG~~----------------------y~~ll~~~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~ 222 (228)
||++ |++++.+..+|+++|+||++|++|++|+++|+.||.||++|+++|++||+||++
T Consensus 162 iG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~ 241 (289)
T PLN02608 162 LGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSE 241 (289)
T ss_pred cccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHc
Confidence 9996 888887644799888999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 027112 223 LGFAE 227 (228)
Q Consensus 223 igv~~ 227 (228)
+||.+
T Consensus 242 lgvlt 246 (289)
T PLN02608 242 LGFTP 246 (289)
T ss_pred CCCCC
Confidence 99875
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=8.2e-64 Score=439.28 Aligned_cols=210 Identities=60% Similarity=0.989 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccChHhhhccccCchHHHHHhHHHHHHh
Q 027112 8 VSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQ 87 (228)
Q Consensus 8 ~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~ 87 (228)
.+++|+++|+++ +. ++.++|.+|||+||||++||++.+.|||||++++.+|+++++|.+|.+++++|++||++
T Consensus 12 ~~~~V~~~v~~~------~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~ 84 (253)
T cd00691 12 DLEAARNDIAKL------ID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKK 84 (253)
T ss_pred HHHHHHHHHHHH------HH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHH
Confidence 355666666555 55 99999999999999999999999999999999988999999999998899999999999
Q ss_pred CCCCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHhcCCChhhhHhhccccc
Q 027112 88 FPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (228)
Q Consensus 88 ~~~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~---~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~GaHt 164 (228)
+|+|||||||++|+|+||+.+|||.|+|++||+|+..+. ++++||.|+.++++++++| +++||+++|||+|+||||
T Consensus 85 ~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHT 163 (253)
T cd00691 85 YPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHT 163 (253)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhcccce
Confidence 999999999999999999999999999999999999986 5778999999999999999 999999999999999999
Q ss_pred chhh----------------------hhhhhhccCCC------cccccccccccCCcchHHHHHHHhhChHHHHHHHHHH
Q 027112 165 LVSA----------------------KLELLTGEKDG------LLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEA 216 (228)
Q Consensus 165 iG~~----------------------y~~ll~~~~~g------~~~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~A 216 (228)
||++ |+|++.+ +| +++|+||++|+.|++|+++|++||+|+.+|+++|++|
T Consensus 164 iG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~--~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~A 241 (253)
T cd00691 164 LGRCHKERSGYDGPWTKNPLKFDNSYFKELLEE--DWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEA 241 (253)
T ss_pred eecccccCCCCCCCCCCCCCcccHHHHHHHhcC--CCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHH
Confidence 9995 8899887 45 4557899999999999999999999999999999999
Q ss_pred HHHHhhCCCCC
Q 027112 217 HLKLSELGFAE 227 (228)
Q Consensus 217 m~Km~~igv~~ 227 (228)
|+||+++||.+
T Consensus 242 m~Km~~l~v~~ 252 (253)
T cd00691 242 HKKLSELGVPF 252 (253)
T ss_pred HHHHHhcCCCC
Confidence 99999999986
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.4e-64 Score=453.86 Aligned_cols=207 Identities=28% Similarity=0.412 Sum_probs=189.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccCh---HhhhccccCchHHHH
Q 027112 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (228)
Q Consensus 2 ~~~cp~~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (228)
.++||++|+||+++|.++ +.+|+.++|++|||+|||||+ +||||||++. +|+++++|.+| +||
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 479999999999999999 999999999999999999998 9999999884 79999999999 699
Q ss_pred HhHHHHHHh----CC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHhcCC
Q 027112 79 RLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQMGL 151 (228)
Q Consensus 79 ~~i~~iK~~----~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~--~~~~lP~~~~~~~~l~~~F~~~~Gl 151 (228)
++|+.||++ || +|||||||++|||+||.++|||.|+|++||||+.+|. ...+||.|+.++++|++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 999999975 88 8999999999999999999999999999999998873 3458999999999999999 99999
Q ss_pred ChhhhHhhcccccchhh-----------------------------------------------------------hhhh
Q 027112 152 SDKDIVALSGGHTLVSA-----------------------------------------------------------KLEL 172 (228)
Q Consensus 152 ~~~elVaL~GaHtiG~~-----------------------------------------------------------y~~l 172 (228)
+.+|||+||||||||++ |+|+
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 99999999999999996 3333
Q ss_pred hhccCCCcccccccccccCCcchHHHHHHHhhCh----HHHHHHHHHHHHHHhhCCCCC
Q 027112 173 LTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADE----DAFFADYAEAHLKLSELGFAE 227 (228)
Q Consensus 173 l~~~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~----~~F~~~F~~Am~Km~~igv~~ 227 (228)
+.+ +|+ |+|||+|++|++|+++|++||.|+ ++|+++|++||+|||+|||.+
T Consensus 256 l~~--rGl--L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlT 310 (324)
T PLN03030 256 KNG--RGI--LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKT 310 (324)
T ss_pred Hhc--CCC--cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCC
Confidence 333 566 579999999999999999999875 599999999999999999975
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.2e-62 Score=440.97 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=190.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccC------hHhhhccccCchH
Q 027112 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (228)
Q Consensus 2 ~~~cp~~e~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (228)
.++||+||+||+++|+++ +.+++.++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999999 999999999999999999998 999999986 469999999999
Q ss_pred HHHHhHHHHHHh----CC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCC--CCCCCCCCCChHHHHHHHHHh
Q 027112 76 IAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPDAKQGNDHLRQVFGAQ 148 (228)
Q Consensus 76 ~~~~~i~~iK~~----~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~--~~~lP~~~~~~~~l~~~F~~~ 148 (228)
++|++|++||++ || +|||||||++|+|+||+++|||.|+|++||+|+..+.+ .+.||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 699999999975 78 89999999999999999999999999999999987643 368999999999999999 99
Q ss_pred cCCChhhhHhhcccccchhh----------------------------------------------------------hh
Q 027112 149 MGLSDKDIVALSGGHTLVSA----------------------------------------------------------KL 170 (228)
Q Consensus 149 ~Gl~~~elVaL~GaHtiG~~----------------------------------------------------------y~ 170 (228)
+||+++|||+|+||||||++ |+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 232 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYK 232 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHH
Confidence 99999999999999999985 34
Q ss_pred hhhhccCCCcccccccccccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhhCCCCC
Q 027112 171 ELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 227 (228)
Q Consensus 171 ~ll~~~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~igv~~ 227 (228)
+++.+ +|+ |+||++|+.|++|+++|++||.||++|+++|+.||+||+++||.+
T Consensus 233 ~l~~~--~gl--L~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~t 285 (298)
T cd00693 233 NLLAG--RGL--LTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLT 285 (298)
T ss_pred HHHhc--ccC--ccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCcc
Confidence 44443 555 589999999999999999999999999999999999999999964
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.1e-56 Score=403.51 Aligned_cols=206 Identities=32% Similarity=0.481 Sum_probs=180.6
Q ss_pred HHHHhh-hhhcCC---chHHHHHHHhhhcCCccc-----CCCCCCCCccccCh--HhhhccccCchHHHHHhHHHHHHhC
Q 027112 20 KRKLRG-FIAEKN---CAPLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (228)
Q Consensus 20 ~~~i~~-~~~~~~---~a~~~lRl~FHDc~~~d~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (228)
+++|++ +..+.. .++.+|||+||||++||. ..+.|||||||++. .|+++++|.||+..++.|..+++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 344444 444555 466799999999999994 56789999999874 5999999999986677777776666
Q ss_pred CCCChHHHHhhhhhhhhh-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhhHhhcccccchh
Q 027112 89 PTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVS 167 (228)
Q Consensus 89 ~~vS~ADilalaa~~av~-~~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~GaHtiG~ 167 (228)
+ |||||||+|||++||+ ..|||.|+|++||+|++.+.++++||.|+.++++|++.| +++||+++|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 5 9999999999999999 569999999999999999999999999999999999999 999999999999999999998
Q ss_pred h-----------------------hhhhhh-cc---------------CCCcccccccccccCCcchHHHHHHHhhChHH
Q 027112 168 A-----------------------KLELLT-GE---------------KDGLLQLPSDKALLDDPVFRPLVEKYAADEDA 208 (228)
Q Consensus 168 ~-----------------------y~~ll~-~~---------------~~g~~~l~sD~~L~~d~~t~~~V~~~A~~~~~ 208 (228)
+ |+|++. +. ..|+++|+||++|+.|++|+++|++||+||++
T Consensus 179 a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~ 258 (328)
T cd00692 179 QDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAK 258 (328)
T ss_pred cCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHH
Confidence 6 888773 21 12567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 027112 209 FFADYAEAHLKLSELGFAE 227 (228)
Q Consensus 209 F~~~F~~Am~Km~~igv~~ 227 (228)
|+++|+.||+||+++||+.
T Consensus 259 f~~~Fa~Am~KLs~lgv~~ 277 (328)
T cd00692 259 MNAAFAAAMLKLSLLGQDN 277 (328)
T ss_pred HHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999985
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.4e-52 Score=366.57 Aligned_cols=205 Identities=45% Similarity=0.675 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCC-CCCCCCccccChHhhhccccCchHHHHHhHHHHHHhCC
Q 027112 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (228)
Q Consensus 11 ~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~~ 89 (228)
.|++.|+.. +.+++.+++.+|||+||||++|+.+. ..|||||||++.+|+++|+|.+|.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 355566555 66689999999999999999999887 78999999999999999999998889999999999985
Q ss_pred ---CCChHHHHhhhhhhhhhcc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHhcCCChhhhHhh
Q 027112 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (228)
Q Consensus 90 ---~vS~ADilalaa~~av~~~--gGP~~~v~~GR~D~~-----~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL 159 (228)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.+.+++|.+..++.++++.| .++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 8999999999999999999 999999999999998 4567788899999999999999 9999999999999
Q ss_pred c-ccccc-hhh------------------------hhhhhhcc------------CCCcccccccccccCCcchHHHHHH
Q 027112 160 S-GGHTL-VSA------------------------KLELLTGE------------KDGLLQLPSDKALLDDPVFRPLVEK 201 (228)
Q Consensus 160 ~-GaHti-G~~------------------------y~~ll~~~------------~~g~~~l~sD~~L~~d~~t~~~V~~ 201 (228)
+ ||||| |++ |++++.+. ..++.+|+||++|+.|++|+.+|+.
T Consensus 155 ~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ 234 (255)
T cd00314 155 SAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVER 234 (255)
T ss_pred ccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHH
Confidence 9 99999 887 78888752 1233567899999999999999999
Q ss_pred HhhChHHHHHHHHHHHHHHhh
Q 027112 202 YAADEDAFFADYAEAHLKLSE 222 (228)
Q Consensus 202 ~A~~~~~F~~~F~~Am~Km~~ 222 (228)
||+|+++|+++|++||+||++
T Consensus 235 ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 235 YASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999974
No 9
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=7.1e-52 Score=359.45 Aligned_cols=177 Identities=42% Similarity=0.685 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccC-hHhhhccccCchHHHHHhHHHHHHh---
Q 027112 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQ--- 87 (228)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~iK~~--- 87 (228)
||++|+++ +..++.++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|++||++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 67777777 7789999999999999999987 999999965 7899999999998899999999986
Q ss_pred -CC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHhcCCChhhhHhhcccc
Q 027112 88 -FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (228)
Q Consensus 88 -~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~GaH 163 (228)
|| +|||||||++|+++||+.+|||.|+|++||+|++.+++.+ +||.|..++++|++.| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 77 7999999999999999999999999999999999997543 5999999999999999 99999999999999999
Q ss_pred cchhh----hh-----------------------------------------hhhhccCCCcccccccccccCCcchHHH
Q 027112 164 TLVSA----KL-----------------------------------------ELLTGEKDGLLQLPSDKALLDDPVFRPL 198 (228)
Q Consensus 164 tiG~~----y~-----------------------------------------~ll~~~~~g~~~l~sD~~L~~d~~t~~~ 198 (228)
|||++ |. +++.+ +|+ |+||++|++|++|+++
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~dtp~~fDN~Yy~~ll~~--~gl--l~SD~~L~~d~~t~~~ 223 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLDTPTVFDNSYYKNLLNG--RGL--LPSDQALLNDPETRPI 223 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESSSTTS-SSHHHHHHHHT--EEE--EHHHHHHHHSTTHHHH
T ss_pred ccccceeccccccccccccccccccceeccCCCccccccccCCCcchhHHHHHHhcC--CCc--CHHHHHHhcCHHHHHH
Confidence 99986 22 22222 344 6899999999999999
Q ss_pred HHHHhhC
Q 027112 199 VEKYAAD 205 (228)
Q Consensus 199 V~~~A~~ 205 (228)
|++||+|
T Consensus 224 V~~yA~d 230 (230)
T PF00141_consen 224 VERYAQD 230 (230)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999986
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.9e-50 Score=368.19 Aligned_cols=223 Identities=35% Similarity=0.570 Sum_probs=196.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhhcC---------CchHHHHHHHhhhcCCcccCCCCCCCC-ccccChHhhhccccC
Q 027112 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANN 72 (228)
Q Consensus 3 ~~cp~~e~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~ 72 (228)
+....+++.=.-.++++|++|++++++. .++|.+|||+||+++|||.++++||++ |+|+|.+|.+++.|.
T Consensus 31 ~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~ 110 (409)
T cd00649 31 EDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNV 110 (409)
T ss_pred CCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhh
Confidence 3344455555556788899999998764 799999999999999999999999998 699999999999999
Q ss_pred chHHHHHhHHHHHHhCC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCC-------------------------
Q 027112 73 GLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------- 126 (228)
Q Consensus 73 gl~~~~~~i~~iK~~~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~------------------------- 126 (228)
||.++.++|++||+++| .||+||+|+||+++||+.+|||.++|.+||.|...+.
T Consensus 111 gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~ 190 (409)
T cd00649 111 NLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLEN 190 (409)
T ss_pred hHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhcc
Confidence 99999999999999998 7999999999999999999999999999999997542
Q ss_pred -------------CCC--CCCCCCCChHHHHHHHHHhcCCChhhhHhh-cccccchhh----------------------
Q 027112 127 -------------QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSA---------------------- 168 (228)
Q Consensus 127 -------------~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL-~GaHtiG~~---------------------- 168 (228)
+++ .||.|..++.+|++.| .+|||+.+||||| +||||||++
T Consensus 191 pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~g 269 (409)
T cd00649 191 PLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQG 269 (409)
T ss_pred chhhhhccccccCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHh
Confidence 233 6899999999999999 9999999999999 599999984
Q ss_pred -----------------------------------hhhhhhcc--------------------------------CCCcc
Q 027112 169 -----------------------------------KLELLTGE--------------------------------KDGLL 181 (228)
Q Consensus 169 -----------------------------------y~~ll~~~--------------------------------~~g~~ 181 (228)
|++|+... ..+++
T Consensus 270 Lgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~g 349 (409)
T cd00649 270 LGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPM 349 (409)
T ss_pred hcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcc
Confidence 66666510 02567
Q ss_pred cccccccccCCcchHHHHHHHhhChHHHHHHHHHHHHHH--hhCCCC
Q 027112 182 QLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKL--SELGFA 226 (228)
Q Consensus 182 ~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km--~~igv~ 226 (228)
+|+||++|+.|++|+++|++||.|+++|+++|++||+|| +.+|+.
T Consensus 350 mL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~ 396 (409)
T cd00649 350 MLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPK 396 (409)
T ss_pred cchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCch
Confidence 789999999999999999999999999999999999999 577754
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.8e-47 Score=368.47 Aligned_cols=216 Identities=35% Similarity=0.541 Sum_probs=189.8
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhcC---------CchHHHHHHHhhhcCCcccCCCCCCCC-ccccChHhhhccccCchHH
Q 027112 7 TVSEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDI 76 (228)
Q Consensus 7 ~~e~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~ 76 (228)
.+|+.=.=.++..|++|++++++. .++|.+|||+||+++||+.+++.||++ |+|+|.+|.+++.|.+|.+
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldk 124 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDK 124 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHH
Confidence 344444445566899999998874 699999999999999999999999996 6999999999999999999
Q ss_pred HHHhHHHHHHhCC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCC-----------------------------
Q 027112 77 AVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP----------------------------- 126 (228)
Q Consensus 77 ~~~~i~~iK~~~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~----------------------------- 126 (228)
+.++|++||++|| .|||||||+||+++||+.+|||.|+|.+||+|++.+.
T Consensus 125 a~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 125 ARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 9999999999998 8999999999999999999999999999999995431
Q ss_pred --------CCC--CCCCCCCChHHHHHHHHHhcCCChhhhHhhc-ccccchhh---------------------------
Q 027112 127 --------QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSA--------------------------- 168 (228)
Q Consensus 127 --------~~~--~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~-GaHtiG~~--------------------------- 168 (228)
+++ .+|.|..++.+|++.| .++|||.+|||||+ ||||||++
T Consensus 205 ~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c 283 (716)
T TIGR00198 205 EMGLIYVNPEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHN 283 (716)
T ss_pred hccccccCcccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccC
Confidence 122 6899999999999999 99999999999995 99999974
Q ss_pred ------------------------------hhhhhhcc------------------------------CCCccccccccc
Q 027112 169 ------------------------------KLELLTGE------------------------------KDGLLQLPSDKA 188 (228)
Q Consensus 169 ------------------------------y~~ll~~~------------------------------~~g~~~l~sD~~ 188 (228)
|+||+.++ .....+|+||++
T Consensus 284 ~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDla 363 (716)
T TIGR00198 284 QYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLA 363 (716)
T ss_pred CCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHH
Confidence 66776531 012566899999
Q ss_pred ccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhhC
Q 027112 189 LLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSEL 223 (228)
Q Consensus 189 L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~i 223 (228)
|..|++|+++|+.||.|++.|+++|++||.||++.
T Consensus 364 L~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~ 398 (716)
T TIGR00198 364 LRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHR 398 (716)
T ss_pred hccCccHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999853
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-44 Score=348.13 Aligned_cols=218 Identities=35% Similarity=0.559 Sum_probs=191.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhcC---------CchHHHHHHHhhhcCCcccCCCCCCCC-ccccChHhhhccccCc
Q 027112 4 NYPTVSEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNG 73 (228)
Q Consensus 4 ~cp~~e~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~g 73 (228)
.-..+|+.=.=.++..|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|+|.+|.+++.|.+
T Consensus 44 ~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~g 123 (726)
T PRK15061 44 DFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVN 123 (726)
T ss_pred CCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhh
Confidence 334455555556777899999998875 799999999999999999999999997 6999999999999999
Q ss_pred hHHHHHhHHHHHHhCC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCC-------------------------
Q 027112 74 LDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------- 127 (228)
Q Consensus 74 l~~~~~~i~~iK~~~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~------------------------- 127 (228)
|.++.++|++||+++| .||+||+|+||+.+|||.+|||.++|.+||.|...+..
T Consensus 124 L~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 124 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 9999999999999997 79999999999999999999999999999999865421
Q ss_pred --------------CC--CCCCCCCChHHHHHHHHHhcCCChhhhHhhc-ccccchhh----------------------
Q 027112 128 --------------EG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSA---------------------- 168 (228)
Q Consensus 128 --------------~~--~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~-GaHtiG~~---------------------- 168 (228)
++ -+|.|..++.+|++.| .+|||+.+|||||+ ||||||++
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qg 282 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQG 282 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHh
Confidence 11 1688889999999999 99999999999995 99999995
Q ss_pred -----------------------------------hhhhhhcc--------------------------------CCCcc
Q 027112 169 -----------------------------------KLELLTGE--------------------------------KDGLL 181 (228)
Q Consensus 169 -----------------------------------y~~ll~~~--------------------------------~~g~~ 181 (228)
|++|+... ...++
T Consensus 283 Lgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~ 362 (726)
T PRK15061 283 LGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPT 362 (726)
T ss_pred ccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcc
Confidence 66666530 01367
Q ss_pred cccccccccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhh
Q 027112 182 QLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE 222 (228)
Q Consensus 182 ~l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~ 222 (228)
+|+||++|..|++++++|++||.|+++|+++|++||.||+.
T Consensus 363 MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~h 403 (726)
T PRK15061 363 MLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTH 403 (726)
T ss_pred cccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 78999999999999999999999999999999999999955
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.6e-42 Score=307.38 Aligned_cols=198 Identities=28% Similarity=0.436 Sum_probs=174.1
Q ss_pred hhhcCCchHHHHHHHhhhcCCcccCCCCCCCCcc-ccChHhhhccccCc--hHHHHHhHHHHHHhCC-------CCChHH
Q 027112 26 FIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP-------TISYAD 95 (228)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~iK~~~~-------~vS~AD 95 (228)
++....+++.+|||+||++.||+.+++.||+||+ |+|.+|++|+.|.+ |.+++.+|++||+++| .||.||
T Consensus 23 i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~AD 102 (297)
T cd08200 23 ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLAD 102 (297)
T ss_pred HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHH
Confidence 6677789999999999999999999999999996 99999999999999 9999999999999997 799999
Q ss_pred HHhhhhhhhhhccCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CChHHHHHHHHHhcCCCh
Q 027112 96 LYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAK------------QGNDHLRQVFGAQMGLSD 153 (228)
Q Consensus 96 ilalaa~~av~~~gG-----P~~~v~~GR~D~~~s~~--~---~~lP~~~------------~~~~~l~~~F~~~~Gl~~ 153 (228)
+|+||+.+|||.+|| |.+|+.+||.|.+.+.. + ..+|.+. .+...|++.| .++|||+
T Consensus 103 LivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f-~rlglsd 181 (297)
T cd08200 103 LIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKA-QLLTLTA 181 (297)
T ss_pred HHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHH-HhCCCCh
Confidence 999999999999999 99999999999987632 1 2345432 2346799999 9999999
Q ss_pred hhhHhhcccc-cchhh--------------------hhhhhhcc------------------CCCc---ccccccccccC
Q 027112 154 KDIVALSGGH-TLVSA--------------------KLELLTGE------------------KDGL---LQLPSDKALLD 191 (228)
Q Consensus 154 ~elVaL~GaH-tiG~~--------------------y~~ll~~~------------------~~g~---~~l~sD~~L~~ 191 (228)
+|||||+||| ++|++ |+|||+.. ..|. +++++|..|.+
T Consensus 182 ~EmvaL~Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~s 261 (297)
T cd08200 182 PEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGS 261 (297)
T ss_pred HHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhcc
Confidence 9999999998 79986 89998631 0122 23688999999
Q ss_pred CcchHHHHHHHhhC--hHHHHHHHHHHHHHHhhCC
Q 027112 192 DPVFRPLVEKYAAD--EDAFFADYAEAHLKLSELG 224 (228)
Q Consensus 192 d~~t~~~V~~~A~~--~~~F~~~F~~Am~Km~~ig 224 (228)
|++.|++|+.||+| ++.|+++|++||.||.++.
T Consensus 262 d~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 262 NSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred CHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999999999874
No 14
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.5e-43 Score=306.76 Aligned_cols=188 Identities=28% Similarity=0.414 Sum_probs=157.9
Q ss_pred hhcCCchHHHHHHHhhhcCCcccCCCCCCCCccccChHhhhccccCchH--HHHHhHHHHHHhCCCCChHHHHhhhhhhh
Q 027112 27 IAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVG 104 (228)
Q Consensus 27 ~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~iK~~~~~vS~ADilalaa~~a 104 (228)
-.++.+++.+|||+||||++||...+.|||||||++ |..+++|.|+. ..++.++.|+. ++|||||||+||+++|
T Consensus 36 ~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~A 111 (264)
T cd08201 36 GPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTS 111 (264)
T ss_pred CCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998 57788888775 23444444432 5899999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhhHhhcc-cccchhh---------------
Q 027112 105 VEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLVSA--------------- 168 (228)
Q Consensus 105 v~~~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~G-aHtiG~~--------------- 168 (228)
|+.+|||.|+|++||+|++.+.+.+ ||.|+.++++|++.| +++||+++|||+|+| |||||++
T Consensus 112 V~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~ 189 (264)
T cd08201 112 VASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVP 189 (264)
T ss_pred HHHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCcccc
Confidence 9999999999999999999998776 999999999999999 999999999999995 9999998
Q ss_pred -----------------hhhhhhccCCCccc------ccccccccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhh
Q 027112 169 -----------------KLELLTGEKDGLLQ------LPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE 222 (228)
Q Consensus 169 -----------------y~~ll~~~~~g~~~------l~sD~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~ 222 (228)
|.+++++...++|+ +.||..+++...- ..++.+| +++.|.+.-+..+.||.+
T Consensus 190 ~~~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n-~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 190 DTVLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGN-VTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCcc-HHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 55566555556654 4677777753322 4457787 799999999999999974
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.7e-38 Score=305.96 Aligned_cols=208 Identities=26% Similarity=0.425 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhhhhhcCCchHHHHHHHhhhcCCcccCCCCCCCCcc-ccChHhhhcccc--CchHHHHHhHHHHHHhCC
Q 027112 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP 89 (228)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~iK~~~~ 89 (228)
++.|...|+ +++.+...++.+||++||++.|||.++++||+||+ |++.+|++++.| .+|.+++.+|++||+++|
T Consensus 431 ~~di~~lk~---~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~ 507 (716)
T TIGR00198 431 EGDIKELKQ---QILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFA 507 (716)
T ss_pred HHHHHHHHH---HHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 455544432 35677889999999999999999999999999995 999999999999 899999999999999999
Q ss_pred --CCChHHHHhhhhhhhhhcc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCChHHHHHHH
Q 027112 90 --TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQVF 145 (228)
Q Consensus 90 --~vS~ADilalaa~~av~~~---gGP--~~~v~~GR~D~~~s~--~~~~lP---~~------------~~~~~~l~~~F 145 (228)
.||.||+|+||+.+|||.+ ||| .+|+.+||.|++... +++..| .+ ......|++.|
T Consensus 508 ~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a 587 (716)
T TIGR00198 508 KGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKA 587 (716)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHH
Confidence 8999999999999999998 897 589999999998763 222222 11 12345689999
Q ss_pred HHhcCCChhhhHhhcccc-cchhh--------------------hhhhhhcc------------------CCCcccc---
Q 027112 146 GAQMGLSDKDIVALSGGH-TLVSA--------------------KLELLTGE------------------KDGLLQL--- 183 (228)
Q Consensus 146 ~~~~Gl~~~elVaL~GaH-tiG~~--------------------y~~ll~~~------------------~~g~~~l--- 183 (228)
..+|||+.|||||+||| ++|++ |+|||+.. ..|.+++
T Consensus 588 -~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t 666 (716)
T TIGR00198 588 -QLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTAT 666 (716)
T ss_pred -HhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccC
Confidence 99999999999999995 99997 89998731 0133333
Q ss_pred cccccccCCcchHHHHHHHhhCh--HHHHHHHHHHHHHHhhCC
Q 027112 184 PSDKALLDDPVFRPLVEKYAADE--DAFFADYAEAHLKLSELG 224 (228)
Q Consensus 184 ~sD~~L~~d~~t~~~V~~~A~~~--~~F~~~F~~Am~Km~~ig 224 (228)
++|..|.+|++.|++|+.||+|+ +.|+++|++||.|+.++|
T Consensus 667 ~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 667 RVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred hhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 78999999999999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.8e-37 Score=298.69 Aligned_cols=198 Identities=29% Similarity=0.450 Sum_probs=173.2
Q ss_pred hhhcCCchHHHHHHHhhhcCCcccCCCCCCCCcc-ccChHhhhccccC--chHHHHHhHHHHHHhC-------CCCChHH
Q 027112 26 FIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-------PTISYAD 95 (228)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~iK~~~-------~~vS~AD 95 (228)
++...-..+.+||++||++.|||.++++||+||+ |++.+|++++.|. +|.+++++|++||+++ |.||.||
T Consensus 448 i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~AD 527 (726)
T PRK15061 448 ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLAD 527 (726)
T ss_pred HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHH
Confidence 6677788999999999999999999999999995 9999999999999 9999999999999997 6899999
Q ss_pred HHhhhhhhhhhcc---CC--CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CChHHHHHHHHHhcCCCh
Q 027112 96 LYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ--E---GRLPDAK------------QGNDHLRQVFGAQMGLSD 153 (228)
Q Consensus 96 ilalaa~~av~~~---gG--P~~~v~~GR~D~~~s~~--~---~~lP~~~------------~~~~~l~~~F~~~~Gl~~ 153 (228)
+|+||+.+|||.+ || |.+|+.+||.|++.... + ..+|... .....|++.| .++|||+
T Consensus 528 LivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a-~~lglt~ 606 (726)
T PRK15061 528 LIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKA-QLLTLTA 606 (726)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHHH-HhCCCCh
Confidence 9999999999998 58 99999999999987632 2 2456543 2236899999 9999999
Q ss_pred hhhHhhcccc-cchhh--------------------hhhhhhcc--------C----------CCccc---ccccccccC
Q 027112 154 KDIVALSGGH-TLVSA--------------------KLELLTGE--------K----------DGLLQ---LPSDKALLD 191 (228)
Q Consensus 154 ~elVaL~GaH-tiG~~--------------------y~~ll~~~--------~----------~g~~~---l~sD~~L~~ 191 (228)
.|||||+||| ++|.+ |+|||+.. . .|.++ +++|..|.+
T Consensus 607 ~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgs 686 (726)
T PRK15061 607 PEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGS 686 (726)
T ss_pred HHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheeccc
Confidence 9999999997 78876 99998631 0 12222 478999999
Q ss_pred CcchHHHHHHHhhC--hHHHHHHHHHHHHHHhhCC
Q 027112 192 DPVFRPLVEKYAAD--EDAFFADYAEAHLKLSELG 224 (228)
Q Consensus 192 d~~t~~~V~~~A~~--~~~F~~~F~~Am~Km~~ig 224 (228)
|++.|++|+.||+| ++.|+++|++||.|+.+++
T Consensus 687 ds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 687 NSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred CHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=246.34 Aligned_cols=218 Identities=36% Similarity=0.560 Sum_probs=189.0
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhcC---------CchHHHHHHHhhhcCCcccCCCCCCCCc-cccChHhhhccccCchHH
Q 027112 7 TVSEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANNGLDI 76 (228)
Q Consensus 7 ~~e~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~gl~~ 76 (228)
.+|+.=.=.+...+++|+++..+. ..+|.+|||+||-+++|+..++.||..+ ..+|.++.++|.|.+|++
T Consensus 60 Yaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDK 139 (730)
T COG0376 60 YAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDK 139 (730)
T ss_pred HHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHH
Confidence 444444445566789999988774 5899999999999999999999999885 889999999999999999
Q ss_pred HHHhHHHHHHhCC-CCChHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCC----------------------------
Q 027112 77 AVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------- 127 (228)
Q Consensus 77 ~~~~i~~iK~~~~-~vS~ADilalaa~~av~~~gGP~~~v~~GR~D~~~s~~---------------------------- 127 (228)
+.++|.+||++|+ .||+||++.|++.+|++..|++.+.+..||.|-..+..
T Consensus 140 arRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaa 219 (730)
T COG0376 140 ARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAA 219 (730)
T ss_pred HHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhh
Confidence 9999999999998 99999999999999999999999999999999887632
Q ss_pred ----------C--CCCCCCCCChHHHHHHHHHhcCCChhhhHhhc-ccccchhh--------------------------
Q 027112 128 ----------E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSA-------------------------- 168 (228)
Q Consensus 128 ----------~--~~lP~~~~~~~~l~~~F~~~~Gl~~~elVaL~-GaHtiG~~-------------------------- 168 (228)
+ +..|.|-.+..+++..| ++|+++.+|.|||+ ||||+|.+
T Consensus 220 vqMGLIYVNPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~ 298 (730)
T COG0376 220 VQMGLIYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWA 298 (730)
T ss_pred heeeeEEeCCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccc
Confidence 1 23577777888999999 99999999999998 59999998
Q ss_pred -------------------------------hhhhhhcc-------------------------------CCCccccccc
Q 027112 169 -------------------------------KLELLTGE-------------------------------KDGLLQLPSD 186 (228)
Q Consensus 169 -------------------------------y~~ll~~~-------------------------------~~g~~~l~sD 186 (228)
|.+|+..+ ...++||++|
T Consensus 299 ~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttD 378 (730)
T COG0376 299 NTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTD 378 (730)
T ss_pred cccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccc
Confidence 45555321 0156789999
Q ss_pred ccccCCcchHHHHHHHhhChHHHHHHHHHHHHHHhhCCC
Q 027112 187 KALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGF 225 (228)
Q Consensus 187 ~~L~~d~~t~~~V~~~A~~~~~F~~~F~~Am~Km~~igv 225 (228)
.+|-.||..+.+.++|..|++.|.+.|+.||-||..-..
T Consensus 379 laLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 379 LALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred hhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999986543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3e-17 Score=154.24 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=159.2
Q ss_pred hhhcCCchHHHHHHHhhhcCCcccCCCCCCCCc-cccChHhhhccccC--chHHHHHhHHHHHHhCC-CCChHHHHhhhh
Q 027112 26 FIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP-TISYADLYQLAG 101 (228)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~iK~~~~-~vS~ADilalaa 101 (228)
|+++.-...+++-.+|..+.+|..|++.||+|| .|++.+.++|+.|. -|.+.+.+++.|.++++ .||.||+|+|++
T Consensus 458 IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADlIVL~G 537 (730)
T COG0376 458 ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLIVLGG 537 (730)
T ss_pred HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHheeecc
Confidence 678888899999999999999999999999998 89999999999995 57788999999999987 799999999999
Q ss_pred hhhhhcc---CCC--CCCCCCCCCCCCCCCCC-----CCCC------------CCCCChHHHHHHHHHhcCCChhhhHhh
Q 027112 102 VVGVEVT---GGP--DIPFHPGRDDKAEPPQE-----GRLP------------DAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (228)
Q Consensus 102 ~~av~~~---gGP--~~~v~~GR~D~~~s~~~-----~~lP------------~~~~~~~~l~~~F~~~~Gl~~~elVaL 159 (228)
..+|+.+ +|- .+||.+||.|++....+ ..-| ..-.+..-|+++- +.++||..||++|
T Consensus 538 ~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA-qlL~LtapemtVL 616 (730)
T COG0376 538 NAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA-QLLTLTAPEMTVL 616 (730)
T ss_pred hHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH-HHhccCCccceEE
Confidence 9999874 564 46889999999775211 1111 1122344588888 8899999999999
Q ss_pred cccc-cchhh--------------------hhhhhhcc--------CC----------Ccc---cccccccccCCcchHH
Q 027112 160 SGGH-TLVSA--------------------KLELLTGE--------KD----------GLL---QLPSDKALLDDPVFRP 197 (228)
Q Consensus 160 ~GaH-tiG~~--------------------y~~ll~~~--------~~----------g~~---~l~sD~~L~~d~~t~~ 197 (228)
+||- .+|.. |.||++.. .+ |.+ -...|..+-++++.|.
T Consensus 617 iGGlRvLg~n~g~s~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA 696 (730)
T COG0376 617 IGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRA 696 (730)
T ss_pred EcceEeeccCCCCCccceeccCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHH
Confidence 9876 44433 88888642 11 221 1246888889999999
Q ss_pred HHHHHhhC--hHHHHHHHHHHHHHHhhCC
Q 027112 198 LVEKYAAD--EDAFFADYAEAHLKLSELG 224 (228)
Q Consensus 198 ~V~~~A~~--~~~F~~~F~~Am~Km~~ig 224 (228)
+.+-||++ ++.|.++|+.||.|..++.
T Consensus 697 ~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 697 LAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 99999997 8899999999999987753
No 19
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=40.40 E-value=47 Score=30.42 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=53.8
Q ss_pred HHHhHHHHHHhCCCCChHHHHhhhhhhhhh--ccCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHHh
Q 027112 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQ 148 (228)
Q Consensus 77 ~~~~i~~iK~~~~~vS~ADilalaa~~av~--~~gGP~~~v~~GR~D~~~s~~~~--~lP~----~~~~~~~l~~~F~~~ 148 (228)
|+..+..++++ .|+|-=.+.+....|+. .+|-..+..++||-|-+.-...+ ..|. +-..+.++.+.| ++
T Consensus 137 Gi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~ 213 (313)
T cd00957 137 GIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KK 213 (313)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HH
Confidence 45555555443 33333333343333332 34667789999999865321111 1111 113366788888 88
Q ss_pred cCCC----------hhhhHhhcccc--cchhh-hhhhhhc
Q 027112 149 MGLS----------DKDIVALSGGH--TLVSA-KLELLTG 175 (228)
Q Consensus 149 ~Gl~----------~~elVaL~GaH--tiG~~-y~~ll~~ 175 (228)
.|+. ..++..|.|+| ||.-. ++++...
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d~~Ti~p~ll~~L~~~ 253 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCDYLTISPALLEELKNS 253 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCeEEcCHHHHHHHHhC
Confidence 8863 67888899999 55543 5555543
No 20
>PRK12346 transaldolase A; Provisional
Probab=30.92 E-value=41 Score=30.89 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHhHHHHHHhCCCCChHHHHhhhhhhhhh--ccCCCCCCCCCCCCCCCCCCC--CCCC-CCCC---CChHHHHHHHHHh
Q 027112 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ--EGRL-PDAK---QGNDHLRQVFGAQ 148 (228)
Q Consensus 77 ~~~~i~~iK~~~~~vS~ADilalaa~~av~--~~gGP~~~v~~GR~D~~~s~~--~~~l-P~~~---~~~~~l~~~F~~~ 148 (228)
|++.+..++++ .|+|--.+.+....++. .+|-..+..++||-|.+.-.. ...+ |... ..+.++.++| ++
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~ 214 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQ 214 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HH
Confidence 45555555443 33433333444444333 367788899999998754321 1112 1122 3466788888 88
Q ss_pred cCC----------ChhhhHhhcccc--cchhh-hhhhhh
Q 027112 149 MGL----------SDKDIVALSGGH--TLVSA-KLELLT 174 (228)
Q Consensus 149 ~Gl----------~~~elVaL~GaH--tiG~~-y~~ll~ 174 (228)
.|+ +..|+.+|.|+| ||.-. +.++..
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEEeCCHHHHHHHHh
Confidence 775 367889999999 55543 555554
No 21
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.30 E-value=1e+02 Score=24.62 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHHHHHhcC-CChhhhHhhcccc--cchhhhhhhhhc
Q 027112 140 HLRQVFGAQMG-LSDKDIVALSGGH--TLVSAKLELLTG 175 (228)
Q Consensus 140 ~l~~~F~~~~G-l~~~elVaL~GaH--tiG~~y~~ll~~ 175 (228)
.+++.- +..| +|..|++.+.|+| |++..+++|+..
T Consensus 16 rIvElV-Re~GRiTi~ql~~~TGasR~Tvk~~lreLVa~ 53 (127)
T PF06163_consen 16 RIVELV-REHGRITIKQLVAKTGASRNTVKRYLRELVAR 53 (127)
T ss_pred HHHHHH-HHcCCccHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 456655 6666 7999999999998 999989988863
No 22
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=27 Score=28.19 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHhcCCChhhh-Hhhcccccchhh
Q 027112 136 QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLVSA 168 (228)
Q Consensus 136 ~~~~~l~~~F~~~~Gl~~~el-VaL~GaHtiG~~ 168 (228)
+++.+.+-.| +++||++.++ |.|-.+|-||.+
T Consensus 31 ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~ 63 (151)
T KOG0400|consen 31 DDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQV 63 (151)
T ss_pred HHHHHHHHHH-HHcCCChhHceeeeecccCcchh
Confidence 3455666779 9999999999 778899999987
No 23
>PTZ00411 transaldolase-like protein; Provisional
Probab=27.32 E-value=44 Score=30.91 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=42.5
Q ss_pred cCCCCCCCCCCCCCCCCCCC--CCCC-CCCC---CChHHHHHHHHHhcCC----------ChhhhHhhcccc--cchhh-
Q 027112 108 TGGPDIPFHPGRDDKAEPPQ--EGRL-PDAK---QGNDHLRQVFGAQMGL----------SDKDIVALSGGH--TLVSA- 168 (228)
Q Consensus 108 ~gGP~~~v~~GR~D~~~s~~--~~~l-P~~~---~~~~~l~~~F~~~~Gl----------~~~elVaL~GaH--tiG~~- 168 (228)
+|-..+..++||-+.+.-.+ .... +... ..+.++...| ++.|+ +..|+..|.|+| ||.-.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~lTi~p~l 258 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDKLTISPKL 258 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCEEeCCHHH
Confidence 57778899999997654321 1111 2222 2356788888 88775 367888899999 44543
Q ss_pred hhhhhhc
Q 027112 169 KLELLTG 175 (228)
Q Consensus 169 y~~ll~~ 175 (228)
+..+...
T Consensus 259 l~~L~~~ 265 (333)
T PTZ00411 259 LEELANT 265 (333)
T ss_pred HHHHHhC
Confidence 5565554
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=25.57 E-value=77 Score=29.93 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHhHHHHHHhCCCCChHHHHhhhhhhhhh--ccCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CChHHHHHHHHHh
Q 027112 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGAQ 148 (228)
Q Consensus 77 ~~~~i~~iK~~~~~vS~ADilalaa~~av~--~~gGP~~~v~~GR~D~~~s~~~~--~lP~~~----~~~~~l~~~F~~~ 148 (228)
|+..+..++++ .|.|--.+.+....|+. .+|-..+..++||-|.+.-...+ .+|... ..+.++.+.| +.
T Consensus 143 Gi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~~ 219 (391)
T PRK12309 143 GIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-KK 219 (391)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-Hh
Confidence 55555555443 23333233333333332 35778889999998875432211 133222 2366788888 77
Q ss_pred cCC----------ChhhhHhhcccc--cchhh-hhhhhh
Q 027112 149 MGL----------SDKDIVALSGGH--TLVSA-KLELLT 174 (228)
Q Consensus 149 ~Gl----------~~~elVaL~GaH--tiG~~-y~~ll~ 174 (228)
.|+ +..++..|.|+| ||.-. +..+..
T Consensus 220 ~~~~T~Im~ASfRn~~~v~~laG~d~~Ti~p~ll~~L~~ 258 (391)
T PRK12309 220 FGYKTEVMGASFRNIGEIIELAGCDLLTISPKLLEQLRS 258 (391)
T ss_pred cCCCcEEEecccCCHHHHHHHHCCCeeeCCHHHHHHHHh
Confidence 775 367888899999 55543 444443
No 25
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=25.04 E-value=59 Score=27.58 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHhcCCChhhhHhhcccccchhhhhhhhhc
Q 027112 137 GNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLELLTG 175 (228)
Q Consensus 137 ~~~~l~~~F~~~~Gl~~~elVaL~GaHtiG~~y~~ll~~ 175 (228)
...+|...| .++|+++.|.+.++..|. -+++-.+
T Consensus 106 Qa~~la~wF-~~~Gi~IHd~ti~Ip~~v----H~rIH~G 139 (188)
T PF09533_consen 106 QAEELAEWF-ERRGIDIHDYTIPIPRDV----HRRIHGG 139 (188)
T ss_pred CcHHHHHHH-HHcCCChhheeEecCHHH----HHHhhCC
Confidence 345799999 999999999999987665 4444444
No 26
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=24.82 E-value=69 Score=27.39 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=44.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCC----------hhhhHh--hcccccchhhhhhhhhc
Q 027112 108 TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLS----------DKDIVA--LSGGHTLVSAKLELLTG 175 (228)
Q Consensus 108 ~gGP~~~v~~GR~D~~~s~~~~~lP~~~~~~~~l~~~F~~~~Gl~----------~~elVa--L~GaHtiG~~y~~ll~~ 175 (228)
+|..++..++||-|...-+ +..-+.++.+.+ ++.|+. ++|+.. ++|+|.+=..|.
T Consensus 121 AGA~yvsP~vgR~~~~g~d-------g~~~i~~i~~~~-~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~----- 187 (211)
T cd00956 121 AGATYVSPFVGRIDDLGGD-------GMELIREIRTIF-DNYGFDTKILAASIRNPQHVIEAALAGADAITLPPD----- 187 (211)
T ss_pred cCCCEEEEecChHhhcCCC-------HHHHHHHHHHHH-HHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHH-----
Confidence 3555667899998775321 223356788888 777755 455543 456663211111
Q ss_pred cCCCcccccccccccCCcchHHHHHHHhhC
Q 027112 176 EKDGLLQLPSDKALLDDPVFRPLVEKYAAD 205 (228)
Q Consensus 176 ~~~g~~~l~sD~~L~~d~~t~~~V~~~A~~ 205 (228)
++ ..|+.+|-|..-|+.|..|
T Consensus 188 ----vl-----~~l~~~~~t~~~v~~F~~d 208 (211)
T cd00956 188 ----VL-----EQLLKHPLTDKGVEKFLED 208 (211)
T ss_pred ----HH-----HHHhcCccHHHHHHHHHHH
Confidence 11 2356667788888888654
No 27
>PRK05269 transaldolase B; Provisional
Probab=23.67 E-value=44 Score=30.67 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=41.2
Q ss_pred cCCCCCCCCCCCCCCCCCCC---CCCCCC---CCCChHHHHHHHHHhcCCC----------hhhhHhhcccccc--hhh-
Q 027112 108 TGGPDIPFHPGRDDKAEPPQ---EGRLPD---AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL--VSA- 168 (228)
Q Consensus 108 ~gGP~~~v~~GR~D~~~s~~---~~~lP~---~~~~~~~l~~~F~~~~Gl~----------~~elVaL~GaHti--G~~- 168 (228)
+|-..+..++||-|.+.-.. ...-+. +-..+.++.+.| ++.|+. ..++..|.|+|++ .-.
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~vTi~p~l 248 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRLTISPAL 248 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeEECCHHH
Confidence 57778899999998653211 011111 223466788888 887763 5778889999955 332
Q ss_pred hhhhhh
Q 027112 169 KLELLT 174 (228)
Q Consensus 169 y~~ll~ 174 (228)
+..+..
T Consensus 249 l~~l~~ 254 (318)
T PRK05269 249 LEELAA 254 (318)
T ss_pred HHHHHh
Confidence 555553
No 28
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=23.59 E-value=68 Score=24.30 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred cccCCcchHHHHHH--HhhChHHHHHHHHHHHH
Q 027112 188 ALLDDPVFRPLVEK--YAADEDAFFADYAEAHL 218 (228)
Q Consensus 188 ~L~~d~~t~~~V~~--~A~~~~~F~~~F~~Am~ 218 (228)
..++|.+||..|+. -|.|.++.-+.|-.||.
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 35789999999975 57889888888877764
No 29
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=23.46 E-value=69 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.0
Q ss_pred cccCCcchHHHHHH--HhhChHHHHHHHHHHHH
Q 027112 188 ALLDDPVFRPLVEK--YAADEDAFFADYAEAHL 218 (228)
Q Consensus 188 ~L~~d~~t~~~V~~--~A~~~~~F~~~F~~Am~ 218 (228)
..++|.+||..|+. -|.|.++.-+.|-.||.
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT 66 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 35789999999975 57888888888877764
No 30
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.41 E-value=47 Score=24.44 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=22.4
Q ss_pred ccCCcchHHHHHHHhhChHHHHHHHH-----------HHHHHHhhCCCCC
Q 027112 189 LLDDPVFRPLVEKYAADEDAFFADYA-----------EAHLKLSELGFAE 227 (228)
Q Consensus 189 L~~d~~t~~~V~~~A~~~~~F~~~F~-----------~Am~Km~~igv~~ 227 (228)
|.+||..+ +.|..|++.+++.|. .-+.+|..+||.+
T Consensus 13 L~~dp~~r---erF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~lGvhp 59 (81)
T cd07922 13 LFKDPGLI---ERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGVHP 59 (81)
T ss_pred HhcCHHHH---HHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHcCCCH
Confidence 55555443 456677777777662 3356777777753
No 31
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.17 E-value=65 Score=29.60 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHhHHHHHHhCCCCChHHHHhhhhhhhh--hccCCCCCCCCCCCCCCCCCCCCC--CC-CC---CCCChHHHHHHHHHh
Q 027112 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RL-PD---AKQGNDHLRQVFGAQ 148 (228)
Q Consensus 77 ~~~~i~~iK~~~~~vS~ADilalaa~~av--~~~gGP~~~v~~GR~D~~~s~~~~--~l-P~---~~~~~~~l~~~F~~~ 148 (228)
|+..+..++++ .|+|-=.+.+....++ ..+|-..+..++||-+.+.-...+ .. +. +-..+.++.+.| ++
T Consensus 137 Gi~A~~~L~~~--GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~ 213 (317)
T TIGR00874 137 GIRAAEELEKE--GIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KK 213 (317)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HH
Confidence 55555555443 2222222233333332 335778889999998775322111 11 11 123466788888 88
Q ss_pred cCCC----------hhhhHhhcccc--cchhh-hhhhhh
Q 027112 149 MGLS----------DKDIVALSGGH--TLVSA-KLELLT 174 (228)
Q Consensus 149 ~Gl~----------~~elVaL~GaH--tiG~~-y~~ll~ 174 (228)
.|+. ..++..|.|+| ||.-. +.++..
T Consensus 214 ~g~~T~Im~ASfRn~~qv~~laG~d~~Ti~p~ll~~L~~ 252 (317)
T TIGR00874 214 HGYPTEVMGASFRNKEEILALAGCDRLTISPALLDELKE 252 (317)
T ss_pred cCCCcEEEeeccCCHHHHHHHHCCCeEeCCHHHHHHHHh
Confidence 8863 67888899999 55543 555554
Done!