BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027113
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 24 AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 25 PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84
Query: 82 KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 85 AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144
Query: 141 VENCKSFM----EMVHEVAESQKKKEENKD--ASATAGLLEKLSVEENKTED 186
EN + F E E+ E +KK K+ A A LE LSV+E ED
Sbjct: 145 AENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFDKD +WKERG G K LK+K T KVR++M
Sbjct: 6 PVVHLEKVDVKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 66 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 125
Query: 147 FMEMVHEVAESQKK 160
F E + E KK
Sbjct: 126 FKEEFEKAQEINKK 139
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFD D +WKERG G K LK+K T KVR++M
Sbjct: 57 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 116
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 117 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 176
Query: 147 FMEMVHEVAESQKK 160
F E + E KK
Sbjct: 177 FKEEFEKAQEINKK 190
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFDKD +WKERG G K LK+K T KVR++M
Sbjct: 6 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 66 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 125
Query: 147 FMEMVHEVAESQKK 160
F E + E KK
Sbjct: 126 FKEEFEKAQEINKK 139
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFD D +WKERG G K LK+K T KVR++M
Sbjct: 7 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 66
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 67 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 126
Query: 147 FMEMVHEVAESQKK 160
F E + E KK
Sbjct: 127 FKEEFEKAQEINKK 140
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 28 PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +GK+RL+
Sbjct: 4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 63
Query: 87 MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKS 146
MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E IRF + E
Sbjct: 64 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 123
Query: 147 F 147
F
Sbjct: 124 F 124
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
Human Ranbp2
Length = 130
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 79/115 (68%)
Query: 39 TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
+GEEDE + + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CAN
Sbjct: 2 SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61
Query: 99 HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHE 153
H + M+++ +G+D++ +W A+D++DG+ K E +F + E + F + E
Sbjct: 62 HWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 116
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding
Protein-3
Length = 150
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 14 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 73
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 74 RTQGSLRLILNTKLWAQMQIDK--ASEKSIHITAMDTEDQGVK--VFLISASSKDTGQLY 129
Query: 148 MEMVHEVAESQKKKEENKDA 167
+ H + + + E +
Sbjct: 130 AALHHRILALRSRVESGPSS 149
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|C Chain C, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|D Chain D, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
Length = 138
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 34 EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVMR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90 SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 149
+L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 64 QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 MVHEVAESQKKKEENKDA 167
+ H + + + E+ ++A
Sbjct: 120 LHHRILALRSRVEQEQEA 137
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
pdb|2Y8G|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
Length = 138
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 34 EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
+V V TGEE E +L ++ KL+ FDK W G G ++L T + RLVMR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90 SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 149
+L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 64 QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 MVHEVAESQKKKEENKDA 167
+ H + + + E+ ++A
Sbjct: 120 LHHRILALRSRVEQEQEA 137
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
++T GEE+E+ + KAKL FD D + RG G +KLL+ K GKVR++ R
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGH 61
Query: 95 ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHE 153
+ N V+ Q A N+ W DG+L E F I+ V+ +V
Sbjct: 62 VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK---VKQKADGRRLVGA 114
Query: 154 VAESQKKKE 162
VA++Q+ E
Sbjct: 115 VADAQQAXE 123
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
pdb|3N7C|B Chain B, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
++T GEE+E+ + KAKL FD D + RG G +KLL+ K GKVR++ R
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGH 61
Query: 95 ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHE 153
+ N V+ Q A N+ W DG+L E F I+ V+ +V
Sbjct: 62 VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK---VKQKADGRRLVGA 114
Query: 154 VAESQKKKE 162
VA++Q+ E
Sbjct: 115 VADAQQAXE 123
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 38 TTGE-EDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KI 95
++GE ++EDA K KL+ + KD N++KE+G GT+ LK K +L++R L I
Sbjct: 5 SSGEVKEEDAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNI 61
Query: 96 CANHLVLPMMSVQEHAGND 114
N L+ P M N+
Sbjct: 62 LLNVLIPPNMPCTRTGKNN 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,672,480
Number of Sequences: 62578
Number of extensions: 225385
Number of successful extensions: 418
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 15
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)