Query 027113
Match_columns 228
No_of_seqs 173 out of 628
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00160 RanBD Ran-binding d 100.0 5.2E-43 1.1E-47 283.8 16.2 129 26-154 1-130 (130)
2 COG5171 YRB1 Ran GTPase-activa 100.0 8.6E-43 1.9E-47 294.6 8.1 144 17-160 62-206 (211)
3 cd00835 RanBD Ran-binding doma 100.0 1.7E-40 3.7E-45 265.0 16.9 121 35-155 1-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 100.0 4.3E-40 9.4E-45 260.9 17.5 122 36-157 1-122 (122)
5 KOG0864 Ran-binding protein RA 99.9 5.2E-28 1.1E-32 211.1 -0.2 161 19-179 31-198 (215)
6 KOG2724 Nuclear pore complex c 99.6 1.5E-15 3.3E-20 143.1 6.8 106 44-155 380-486 (487)
7 cd00837 EVH1 EVH1 (Enabled, Va 99.5 1.7E-12 3.6E-17 101.5 14.4 101 44-154 1-103 (104)
8 KOG0866 Ran-binding protein RA 99.3 4.2E-13 9.2E-18 123.0 1.8 110 32-145 144-257 (327)
9 cd01207 Ena-Vasp Enabled-VASP- 99.2 7.1E-10 1.5E-14 88.5 13.1 105 44-158 1-110 (111)
10 PF00568 WH1: WH1 domain; Int 99.1 3.6E-09 7.8E-14 83.3 14.7 101 45-155 9-111 (111)
11 cd01206 Homer Homer type EVH1 99.1 8E-10 1.7E-14 87.9 10.6 104 44-157 3-109 (111)
12 smart00461 WH1 WASP homology r 98.3 1.8E-05 4E-10 62.1 13.1 100 44-154 3-105 (106)
13 PF08553 VID27: VID27 cytoplas 97.6 0.0063 1.4E-07 62.7 18.5 137 40-183 243-385 (794)
14 KOG4590 Signal transduction pr 96.5 0.0028 6.1E-08 60.9 4.4 96 55-160 1-102 (409)
15 cd01205 WASP WASP-type EVH1 do 96.5 0.16 3.5E-06 40.4 13.6 97 45-153 5-103 (105)
16 PF07933 DUF1681: Protein of u 96.1 0.093 2E-06 44.7 10.9 115 44-161 3-128 (160)
17 PF06058 DCP1: Dcp1-like decap 95.1 0.76 1.6E-05 37.2 12.3 98 45-154 21-121 (122)
18 KOG3671 Actin regulatory prote 95.0 0.047 1E-06 53.8 5.7 91 53-155 46-139 (569)
19 COG5167 VID27 Protein involved 89.7 3.4 7.3E-05 41.7 10.5 126 45-184 229-363 (776)
20 KOG2500 Uncharacterized conser 81.2 13 0.00029 33.7 9.0 85 69-160 43-131 (253)
21 KOG0866 Ran-binding protein RA 59.8 2.2 4.9E-05 40.1 -0.8 55 44-98 242-296 (327)
22 PF07576 BRAP2: BRCA1-associat 50.5 26 0.00056 27.9 4.0 27 127-153 50-76 (110)
23 cd00900 PH-like Pleckstrin hom 48.1 85 0.0018 21.3 6.9 24 131-154 76-99 (99)
24 PF11531 CARM1: Coactivator-as 42.3 1.9E+02 0.0041 23.6 8.1 55 93-157 51-105 (114)
25 PF00640 PID: Phosphotyrosine 41.7 1.6E+02 0.0035 22.7 8.4 68 81-154 61-129 (140)
26 PF08777 RRM_3: RNA binding mo 39.0 43 0.00094 26.1 3.6 30 122-154 31-60 (105)
27 cd01215 Dab Disabled (Dab) Pho 37.5 1.8E+02 0.004 24.2 7.2 55 89-148 68-122 (139)
28 PF00169 PH: PH domain; Inter 32.0 1.7E+02 0.0038 20.2 9.3 24 132-155 80-103 (104)
29 PRK14891 50S ribosomal protein 27.6 16 0.00034 30.4 -0.7 38 81-121 17-54 (131)
30 cd00934 PTB Phosphotyrosine-bi 26.3 2.8E+02 0.006 20.7 8.6 69 81-156 51-120 (123)
31 cd01270 DYC-1 DYC-1 (DYB-1 bin 25.9 3.9E+02 0.0085 22.3 9.2 73 80-154 51-133 (140)
32 PF15411 PH_10: Pleckstrin hom 25.2 1.3E+02 0.0029 23.9 4.3 20 131-150 96-115 (116)
33 PF14242 DUF4342: Domain of un 24.8 88 0.0019 23.8 3.1 24 80-105 29-52 (84)
34 PF00511 PPV_E2_C: E2 (early) 24.5 71 0.0015 24.1 2.5 35 116-151 33-67 (81)
35 PF14109 GldH_lipo: GldH lipop 23.3 1.5E+02 0.0032 24.0 4.3 16 60-75 77-92 (131)
36 PF10577 UPF0560: Uncharacteri 23.2 54 0.0012 34.6 2.1 28 48-75 205-232 (807)
37 cd01269 PLX Pollux (PLX) Phosp 22.6 4.5E+02 0.0098 21.8 7.7 64 91-154 60-124 (129)
38 PF04683 Proteasom_Rpn13: Prot 22.4 3.4E+02 0.0074 20.4 7.7 36 68-104 15-51 (85)
39 cd01246 PH_oxysterol_bp Oxyste 22.1 2.8E+02 0.0062 19.3 7.2 23 132-154 69-91 (91)
40 PF13298 LigD_N: DNA polymeras 21.9 1.6E+02 0.0035 23.4 4.1 30 66-98 60-93 (105)
41 KOG0804 Cytoplasmic Zn-finger 21.4 91 0.002 31.0 3.1 30 126-155 110-139 (493)
42 PF09200 Monellin: Monellin; 20.1 35 0.00076 22.9 0.0 26 51-77 15-40 (43)
No 1
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=5.2e-43 Score=283.79 Aligned_cols=129 Identities=44% Similarity=0.795 Sum_probs=124.7
Q ss_pred cceeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCC-CeEEEEEEeCCcceEEeeeeecCC
Q 027113 26 VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPM 104 (228)
Q Consensus 26 f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ket-gk~RIVMR~d~t~KV~lN~~I~~~ 104 (228)
|+|+|+|+.|+|.||||||++||+.|||||+|+++.+.|++||+|+||||+|+++ +++|||||++++++|||||+|+++
T Consensus 1 ~~~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~ 80 (130)
T smart00160 1 FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKS 80 (130)
T ss_pred CCCcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCC
Confidence 7899999999999999999999999999999998888999999999999999999 999999999999999999999999
Q ss_pred ceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 105 MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 105 M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
|+++++.++.++|+|++.|++|++.++++|+|||+++++|++|+.+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 81 MTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred cEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 99999888889999999999999999999999999999999999999875
No 2
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.6e-43 Score=294.61 Aligned_cols=144 Identities=44% Similarity=0.756 Sum_probs=138.7
Q ss_pred CCCCCCCCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEE
Q 027113 17 NEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKIC 96 (228)
Q Consensus 17 ~eee~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~ 96 (228)
...+.++++|+|||.|+.|.++|.|+||.+||.+|||||||+.+.+.|++||+|+++|++|+.|+++||+||||+||+||
T Consensus 62 ~~pesp~ihfepvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklc 141 (211)
T COG5171 62 KGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLC 141 (211)
T ss_pred CCCCCCCcchHHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCceeeecCCCCceEEEE-eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027113 97 ANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 97 lN~~I~~~M~l~~~~gsdKa~vw~-a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
+||.|.|.|+++||.|++++|+|+ +.|.+.|+++.++|+|||.|.++|+.|...|+.+|+.+.+
T Consensus 142 aNH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~K 206 (211)
T COG5171 142 ANHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNEK 206 (211)
T ss_pred hhhccCcceeccCCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5799999999999999999999999999999999998864
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=1.7e-40 Score=264.96 Aligned_cols=121 Identities=50% Similarity=0.856 Sum_probs=116.4
Q ss_pred cccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCC
Q 027113 35 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND 114 (228)
Q Consensus 35 vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsd 114 (228)
|+|.||||||++||+.|||||+|+++.++|++||+|+||||+|++++++|||||+|++++|||||+|+|+|+++++.+++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999987778
Q ss_pred ceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 115 KSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 115 Ka~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
++|+|++.|++++++++++|+|||++++.|++|..+|++++
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 99999999999887889999999999999999999999986
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=4.3e-40 Score=260.91 Aligned_cols=122 Identities=50% Similarity=0.809 Sum_probs=113.6
Q ss_pred ccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCc
Q 027113 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDK 115 (228)
Q Consensus 36 ev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdK 115 (228)
+|+||||+|++||+.|||||+|+++.++|++||+|+||||+|++++++|||||++++++|||||+|+++|.++++.++.+
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 58999999999999999999999877899999999999999999999999999999999999999999999999988899
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027113 116 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 157 (228)
Q Consensus 116 a~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~ 157 (228)
+|+|++.|++++.+++.+|+|||+++++|++|+++|+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~~ 122 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAKEK 122 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 999999999998899999999999999999999999999863
No 5
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.2e-28 Score=211.11 Aligned_cols=161 Identities=40% Similarity=0.649 Sum_probs=144.8
Q ss_pred CCCCCCccceeeeccccccccCcccceeEEEEee-eEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCc-ceEE
Q 027113 19 DEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKA-KLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKIC 96 (228)
Q Consensus 19 ee~~~~~f~Piv~L~~vev~TGEEdEe~lf~~Ra-KLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t-~KV~ 96 (228)
++.+..+|+|++.+..+.+.||++++.++|..|+ +||+|+.+.++|++||+|.++|++|+++|..|+|||+|++ ++||
T Consensus 31 ~~~~~~~~~~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~ 110 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVC 110 (215)
T ss_pred ccCccccccccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhc
Confidence 4888999999999999999999999999999996 9999999999999999999999999999999999999999 8999
Q ss_pred eeeeecCCceeeecCCCCceEEEE-eeecCCCCceeeEEEEEeCCHHH-HHHHHHHHHHHHHHhhhhcc---cchhhHHH
Q 027113 97 ANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVEN-CKSFMEMVHEVAESQKKKEE---NKDASATA 171 (228)
Q Consensus 97 lN~~I~~~M~l~~~~gsdKa~vw~-a~D~adge~k~e~~lIRFksaE~-A~eF~~~~ee~~e~~~~~~~---~~~~~~~~ 171 (228)
+||+|+++|+++|+...+.+|+|. +.||+.+.+...+|+|||.+.++ ++.|+..|+.+.+.+...++ .......+
T Consensus 111 sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e~~~~~~~~~ek~~~~~~~~~~~ 190 (215)
T KOG0864|consen 111 SNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIEEAKEGIEENEKNQESSKNAHNL 190 (215)
T ss_pred ccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhhhhhhhhhhhhhhhccccccccc
Confidence 999999999999999988999995 88999999999999999999999 99999999999988875433 33344555
Q ss_pred HHhhhccc
Q 027113 172 GLLEKLSV 179 (228)
Q Consensus 172 ~~~e~l~~ 179 (228)
+.|+.+-.
T Consensus 191 ~~~~~~~~ 198 (215)
T KOG0864|consen 191 EYLKGGWK 198 (215)
T ss_pred hhhhhhHH
Confidence 55555443
No 6
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.5e-15 Score=143.08 Aligned_cols=106 Identities=21% Similarity=0.333 Sum_probs=88.9
Q ss_pred ceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCC-cceEEeeeeecCCceeeecCCCCceEEEEee
Q 027113 44 EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSK-TLKICANHLVLPMMSVQEHAGNDKSCVWHAA 122 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~-t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~ 122 (228)
++.+|+.||++|.+.. +++.++|+|+|||..... +++.||+|.|. +|+|+||.+|+++|+++++..+. +.+.|.
T Consensus 380 dda~ysKkckvfykKd--KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknn--vlIvcv 454 (487)
T KOG2724|consen 380 DDAVYSKKCKVFYKKD--KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNN--VLIVCV 454 (487)
T ss_pred ccchhccccceEEEec--ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCc--eEEEEe
Confidence 5899999999999965 799999999999977765 99999999975 67999999999999999975432 223333
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 123 DYADGELKDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 123 D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
- ......+.+|||||++++.|++|.++|.+..
T Consensus 455 p-~~e~t~p~TmLIRvktad~aD~L~~kI~E~a 486 (487)
T KOG2724|consen 455 P-PSESTEPATMLIRVKTADGADKLTDKILEVA 486 (487)
T ss_pred C-CcccccceeEEEEecccchHHHHHHHHHhhc
Confidence 2 3455679999999999999999999998753
No 7
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.48 E-value=1.7e-12 Score=101.55 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=88.6
Q ss_pred ceeEEEEeeeEEEEccCCCCccee--ceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEe
Q 027113 44 EDAILDLKAKLYRFDKDGNQWKER--GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkER--GvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a 121 (228)
+.+|+..+|.||.+++..+.|..+ |+|.|.|.++...+.+||+|++-+..++++|+.|+++|.+... ++....|-.
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~--~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQA--TPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeec--CCeEEEEEc
Confidence 357999999999999888999999 9999999999988899999999889999999999999998763 456666753
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 122 ~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
- ...|-+.|.|.++|+.|...|+.+
T Consensus 79 ~--------~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 79 D--------NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred C--------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 2 236999999999999999999875
No 8
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=4.2e-13 Score=123.04 Aligned_cols=110 Identities=35% Similarity=0.483 Sum_probs=94.7
Q ss_pred ccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCC----eEEEEEEeCCcceEEeeeeecCCcee
Q 027113 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQSKTLKICANHLVLPMMSV 107 (228)
Q Consensus 32 L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketg----k~RIVMR~d~t~KV~lN~~I~~~M~l 107 (228)
+..|++.||||++.++|++.||||.|++-...|.+||.|.||++....++ ..|||||..++++|++|..||..|.+
T Consensus 144 ~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~ 223 (327)
T KOG0866|consen 144 LSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQI 223 (327)
T ss_pred ceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHH
Confidence 56899999999999999999999999997789999999999999887654 48999999999999999999999998
Q ss_pred eecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHH
Q 027113 108 QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCK 145 (228)
Q Consensus 108 ~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~ 145 (228)
... +.++++.+++|.... ....|+++++...-.+
T Consensus 224 ek~--sq~~ir~~a~~~e~~--~v~vFl~~~~~~rtd~ 257 (327)
T KOG0866|consen 224 EKA--SQKSIRITAMDTEGQ--GVKVFLISASSKRTDQ 257 (327)
T ss_pred hhh--cccceeeccccccCC--cceEEEeeccccchhh
Confidence 874 567799999887653 2457888887665433
No 9
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.17 E-value=7.1e-10 Score=88.55 Aligned_cols=105 Identities=20% Similarity=0.419 Sum_probs=90.3
Q ss_pred ceeEEEEeeeEEEEccCCCCcceecee-----EEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEE
Q 027113 44 EDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkERGvG-----~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~v 118 (228)
|..||..||.+|.||+..+.|..-|-| .|.|.++...+.+||+-|+..-.++++|+.|+++|.+... +.....
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~--~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQA--TPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeec--CCccee
Confidence 568999999999999988899987774 7999999888899999999777899999999999999763 445566
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027113 119 WHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 158 (228)
Q Consensus 119 w~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~ 158 (228)
|. +. ...|-+.|.|.++|..|...|+.|.+.+
T Consensus 79 w~-----~~---~~v~GLnF~Se~eA~~F~~~v~~Al~~L 110 (111)
T cd01207 79 WR-----DA---RQVYGLNFGSKEDATMFASAMLSALEVL 110 (111)
T ss_pred ee-----cC---CeEEeeccCCHHHHHHHHHHHHHHHHhh
Confidence 65 22 2579999999999999999999999876
No 10
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=99.12 E-value=3.6e-09 Score=83.35 Aligned_cols=101 Identities=19% Similarity=0.314 Sum_probs=86.5
Q ss_pred eeEEEEeeeEEEEccCCCC-cce-eceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEee
Q 027113 45 DAILDLKAKLYRFDKDGNQ-WKE-RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 122 (228)
Q Consensus 45 e~lf~~RaKLyrfdke~~~-WkE-RGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~ 122 (228)
.+|+..+|.||..++..+. |.. .|.|.|.|.++.....+||+++.-+..++++|+.|+++|.+... ++....|..-
T Consensus 9 ~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~~ 86 (111)
T PF00568_consen 9 QSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEET
T ss_pred eEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEeC
Confidence 7899999999999876666 999 99999999999887899999999779999999999999999874 4556667622
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 123 DYADGELKDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 123 D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
+ ..|-|.|.+.++|..|...|++++
T Consensus 87 ~--------~~~GLnF~se~eA~~F~~~v~~~~ 111 (111)
T PF00568_consen 87 D--------CVYGLNFASEEEADQFYKKVQEAK 111 (111)
T ss_dssp T--------CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C--------eEEEEecCCHHHHHHHHHHHhccC
Confidence 1 279999999999999999999864
No 11
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.11 E-value=8e-10 Score=87.92 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=86.4
Q ss_pred ceeEEEEeeeEEEEccCC-CCcceecee--EEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEE
Q 027113 44 EDAILDLKAKLYRFDKDG-NQWKERGAG--TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~-~~WkERGvG--~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~ 120 (228)
|..||..||.+|.||+.. +.|..-|-| .|+|..+...+.+|||-|.+ .+++||..|+++|++.+. +.+.-.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~ka--s~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKT--SQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeec--cccccccc
Confidence 788999999999999875 599987776 56667777789999999876 499999999999999874 55666775
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027113 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 157 (228)
Q Consensus 121 a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~ 157 (228)
| .. ..+.|-|-|.+.++|+.|...|+++++.
T Consensus 79 --D---~R-~~tVyGLnF~Sk~ea~~F~~~f~~~~~~ 109 (111)
T cd01206 79 --D---SR-ANTVYGLGFSSEQQLTKFAEKFQEVKEA 109 (111)
T ss_pred --c---cc-cceeeecccCCHHHHHHHHHHHHHHHHh
Confidence 3 21 1268999999999999999999999874
No 12
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=98.34 E-value=1.8e-05 Score=62.13 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=79.2
Q ss_pred ceeEEEEeeeEEEEccCCCCcceecee-EEEEEeeC--CCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEE
Q 027113 44 EDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHK--VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkERGvG-~LkLlk~k--etgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~ 120 (228)
+.+++..+|-.+.|+...+.|...|.| .+.|.... .+.-+||+-++.+. +|++|+.|+++|.+... +.....|-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~--~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQA--TPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeec--CCceEEEE
Confidence 567888999999998877789999999 77776543 34678999888554 99999999999998863 34455554
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 121 a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
. . ...|-+.|.|.++|..|...|.++
T Consensus 80 ~-----~---~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 80 D-----D---KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred e-----C---CeEEEeecCCHHHHHHHHHHHHhc
Confidence 2 1 246999999999999999999875
No 13
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.56 E-value=0.0063 Score=62.74 Aligned_cols=137 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred CcccceeEEEEeeeEEEEccCCCCcceecee-EEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEE
Q 027113 40 GEEDEDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118 (228)
Q Consensus 40 GEEdEe~lf~~RaKLyrfdke~~~WkERGvG-~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~v 118 (228)
.......++...|.||.|+.....|.-.+.. .++|.+. |+.-..++..+..+++|++.|.+.|++.-+.. -.+++
T Consensus 243 ~p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~---~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e-~lSFi 318 (794)
T PF08553_consen 243 PPEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIET---GKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFE-HLSFI 318 (794)
T ss_pred CCCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc---CCeEEEEEEecCCceEEeeeccCCcCeEEEcc-eeEEE
Confidence 3344459999999999999888889876533 3566554 45444455555667889999999999766533 35788
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH-hhhh----cccchhhHHHHHhhhccccccc
Q 027113 119 WHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES-QKKK----EENKDASATAGLLEKLSVEENK 183 (228)
Q Consensus 119 w~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~-~~~~----~~~~~~~~~~~~~e~l~~~~~~ 183 (228)
|+... .+| ..-+|+|||.+.+....|...|..|.=+ +.+. .++++-.-+.+.+..+.+++..
T Consensus 319 FN~~~-~~~--~~~sw~lkF~~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~e~~Y~~~~~~~~~~ed~~ 385 (794)
T PF08553_consen 319 FNYYT-EDG--SAYSWLLKFKDQEDYERFQEKFMKCLWENLNKMKWSKIKEDEQEYVLDAFSDLEMEDAD 385 (794)
T ss_pred EEeEc-CCC--ceEEEEEEeCCHHHHHHHHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhhhccccccc
Confidence 88543 222 5679999999999999999999999844 3322 2334445566666667776653
No 14
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.0028 Score=60.86 Aligned_cols=96 Identities=20% Similarity=0.405 Sum_probs=75.4
Q ss_pred EEEccCCCCcceecee-----EEEEEeeCCCCeEEEEEEeCCc-ceEEeeeeecCCceeeecCCCCceEEEEeeecCCCC
Q 027113 55 YRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE 128 (228)
Q Consensus 55 yrfdke~~~WkERGvG-----~LkLlk~ketgk~RIVMR~d~t-~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge 128 (228)
|.||...+.|.--|.| .|+|..|.....+|||.|.-+. ..|+||.+|..+++|... +.....|.. .
T Consensus 1 M~ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnka--tptFHqWR~-----a- 72 (409)
T KOG4590|consen 1 MTYDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKA--TPTFHQWRD-----A- 72 (409)
T ss_pred CcccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeec--ccchhhhhh-----h-
Confidence 3566667888876643 5677778777899999998776 899999999999988663 334555552 2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027113 129 LKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 129 ~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
.+.|-+.|.+.++|..|...+-.+.+.+..
T Consensus 73 --rqvyGLnFqs~~DA~~Fa~~~~~A~e~l~~ 102 (409)
T KOG4590|consen 73 --RQVYGLTFQSEQDARAFARGVPVAIEALSG 102 (409)
T ss_pred --hhhhcccccChhhhhhhhhhhhhhhhhhcc
Confidence 356899999999999999999999998864
No 15
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=96.52 E-value=0.16 Score=40.36 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=72.6
Q ss_pred eeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCe--EEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEee
Q 027113 45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 122 (228)
Q Consensus 45 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~ 122 (228)
.+|...=+.||.-.++.+.|.-...|.|-|.++..... .||+=.. +.+++..+-|+.+|.+... +.+ |+..
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~--~~~v~weqElY~~f~y~~~----r~f-FhtF 77 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIK--ANRIIWEQELYDNFEYQQP----RPF-FHTF 77 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEcc--CCcEEEEEEcccCcEEccC----CCc-EEEE
Confidence 35666778999987767899999999999988864333 5555544 4899999999999998763 322 2222
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHH
Q 027113 123 DYADGELKDELFCIRFGSVENCKSFMEMVHE 153 (228)
Q Consensus 123 D~adge~k~e~~lIRFksaE~A~eF~~~~ee 153 (228)
. .| ..++-+.|.+.+.|..|+.++.+
T Consensus 78 e-~d----~c~~GL~Fade~EA~~F~k~v~~ 103 (105)
T cd01205 78 E-GD----DCVVGLNFADETEAAEFRKKVLD 103 (105)
T ss_pred e-cc----CcEEEEEECCHHHHHHHHHHHHh
Confidence 1 11 24688999999999999999875
No 16
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=96.11 E-value=0.093 Score=44.66 Aligned_cols=115 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred ceeEEEE-eeeEEEEccC--C-----CCcc---eeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCC
Q 027113 44 EDAILDL-KAKLYRFDKD--G-----NQWK---ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAG 112 (228)
Q Consensus 44 Ee~lf~~-RaKLyrfdke--~-----~~Wk---ERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~g 112 (228)
|.+||.. .|-+|+.-+- . ..|. ..=+|-|||....+.-++.|++-...|+.+-+.+++.....+.+...
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~D 82 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVID 82 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeec
Confidence 4556663 4777777431 1 2343 34489999987765455588877878999999999999888888888
Q ss_pred CCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhhh
Q 027113 113 NDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKK 161 (228)
Q Consensus 113 sdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~~ 161 (228)
|.|.++....|- .+.-..+-|=|..=.+|=.|..++++..+.++..
T Consensus 83 SSRYFvlRv~d~---~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~ 128 (160)
T PF07933_consen 83 SSRYFVLRVQDP---SGRHAFIGIGFRERSDAFDFNVALQDHRKYLKRE 128 (160)
T ss_dssp --S-EEEEEEET---TTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS--
T ss_pred ccceEEEEEEcC---CCcEEEEEEeeccccccccHHHHHHHHHHHhhch
Confidence 899999988874 3467888899999999999999999999887643
No 17
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=95.11 E-value=0.76 Score=37.17 Aligned_cols=98 Identities=17% Similarity=0.410 Sum_probs=66.9
Q ss_pred eeEEE-EeeeEEEEccCCCCcceece-eEEEEEeeCCCCeEEEE-EEeCCcceEEeeeeecCCceeeecCCCCceEEEEe
Q 027113 45 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLV-MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (228)
Q Consensus 45 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RIV-MR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a 121 (228)
++|.. ..|-||.|+...++|...|+ |+|-|.+......++|+ |=|.++..++. .|++.+.+..+ +..+.+.
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~--~i~~~~~~e~~---~~~l~~r- 94 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVE--PITPDLDFELQ---DPYLIYR- 94 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEE--EE-SGGGEEEE---TTEEEEE-
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceee--ecCCCcEEEEe---CCEEEEE-
Confidence 34443 67999999988899988776 89998765555556544 44444555554 48888888864 3356665
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 122 ~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
+ +. ...|-|=|=+.++++.....|+..
T Consensus 95 -~--~~---~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 95 -N--DN---QEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp -E--TT---TEEEEEEESSHHHHHHHHHHHHHH
T ss_pred -c--CC---ceEEEEEEEeHHHHHHHHHHHHhc
Confidence 1 11 267999999999999999988764
No 18
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.95 E-value=0.047 Score=53.77 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=64.3
Q ss_pred eEEEEccCCCCcceece-eEEEEEeeCCC--CeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCc
Q 027113 53 KLYRFDKDGNQWKERGA-GTVKLLKHKVT--GKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129 (228)
Q Consensus 53 KLyrfdke~~~WkERGv-G~LkLlk~ket--gk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~ 129 (228)
+||.-+.+.+.|.-+|. |-|-|-+.... --.||+--.+ ++||..+-|+.+|.|.. ++.+ |+.+.-.|
T Consensus 46 qLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q----~r~f-fhtFegdd--- 115 (569)
T KOG3671|consen 46 QLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ----PRTF-FHTFEGDD--- 115 (569)
T ss_pred HHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc----Cccc-eeeecccc---
Confidence 56766666679999999 99999766432 2355554443 56999999999999874 4423 33322112
Q ss_pred eeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 130 KDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 130 k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
.+.-+.|-|.++|++|+..+++-.
T Consensus 116 --c~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 116 --CQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred --ceeeecccCHHHHHHHHHHHHHHh
Confidence 257788999999999999998754
No 19
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.75 E-value=3.4 Score=41.74 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=83.0
Q ss_pred eeEEEEeeeEEEEccCCCCcceeceeEEEEEeeC-------CCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceE
Q 027113 45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-------VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (228)
Q Consensus 45 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~k-------etgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~ 117 (228)
+.++..-+-||+|+.-.. .-|++.. ++|+.-..+|-.+--+++|-..|.+.|++.-...+ -++
T Consensus 229 e~~~~~~~~l~~yd~~~e---------~Filq~p~Vkv~i~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~-~tF 298 (776)
T COG5167 229 ETLYSKNGVLSRYDTATE---------RFILQKPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKN-TTF 298 (776)
T ss_pred ceeeeecceEEeecchhh---------eeeecCCceEEEEEecCCeEEEEEEecccceeehheeccccCcceeccc-cee
Confidence 578899999999987321 2222222 46888888888776778888888888875543332 479
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH-Hhhh-hcccchhhHHHHHhhhcccccccc
Q 027113 118 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE-SQKK-KEENKDASATAGLLEKLSVEENKT 184 (228)
Q Consensus 118 vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e-~~~~-~~~~~~~~~~~~~~e~l~~~~~~~ 184 (228)
+|+-++ ++ ..-+|++||.+-..+-+|..++-.|.= +++. .--+.++..-.=.|+..+|..++.
T Consensus 299 vwny~~--~n--~~~s~~LrF~d~~~~~qF~~~~i~cLw~~lN~e~w~~~~~e~kDYilds~~~~~E~q 363 (776)
T COG5167 299 VWNYME--DN--VFHSFSLRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQ 363 (776)
T ss_pred eeeeec--cc--chheeeeeecchhHHHHHHHHHHHHHHHHhhhhhccCchhhhhccccccccCchhhc
Confidence 999665 23 457899999999999999999999973 3332 211222222223455555655443
No 20
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.22 E-value=13 Score=33.66 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=63.7
Q ss_pred eeEEEEEeeCCCCeEEEEEEe-C-CcceEEeeeeecC--CceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHH
Q 027113 69 AGTVKLLKHKVTGKVRLVMRQ-S-KTLKICANHLVLP--MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENC 144 (228)
Q Consensus 69 vG~LkLlk~ketgk~RIVMR~-d-~t~KV~lN~~I~~--~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A 144 (228)
+|-|||--.. -|++||- | .++-+.+|++|.+ +..+.....|.|.+|+..- ||.++-..+-|-|..-.+|
T Consensus 43 tGrlrvvakg----~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~---dgngr~AFiGlGF~eR~da 115 (253)
T KOG2500|consen 43 TGRLRVVAKG----ERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVE---DGNGRHAFIGLGFGERGDA 115 (253)
T ss_pred cceeEEEEcC----cEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEe---CCCccEEEEeecccccccc
Confidence 6788885443 4777775 3 3789999999976 4455555567777777643 5777888888999988899
Q ss_pred HHHHHHHHHHHHHhhh
Q 027113 145 KSFMEMVHEVAESQKK 160 (228)
Q Consensus 145 ~eF~~~~ee~~e~~~~ 160 (228)
=.|..++++.-+=+++
T Consensus 116 fDfnvaLqDHfkyv~~ 131 (253)
T KOG2500|consen 116 FDFNVALQDHFKYVKR 131 (253)
T ss_pred cchhhhHHHHHHHHHH
Confidence 9999999998776653
No 21
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.85 E-value=2.2 Score=40.08 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEee
Q 027113 44 EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN 98 (228)
..-+|-.+++.|+++.-.+.+-.||+|.+++...++.+++|++.+-.+.+.++.|
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERECLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchhhhhcccCCCcccccccccc
Confidence 6889999999999987778999999999999988888899999999998888877
No 22
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=50.46 E-value=26 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCceeeEEEEEeCCHHHHHHHHHHHHH
Q 027113 127 GELKDELFCIRFGSVENCKSFMEMVHE 153 (228)
Q Consensus 127 ge~k~e~~lIRFksaE~A~eF~~~~ee 153 (228)
+.+-.-..||+|.+...|++|+..|.-
T Consensus 50 ~~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 50 GTPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHhCC
Confidence 434455788999999999999998863
No 23
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=48.14 E-value=85 Score=21.26 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 131 DELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 131 ~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
...|.+++.|.+.++.++.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 578999999999999999998753
No 24
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=42.28 E-value=1.9e+02 Score=23.55 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=37.0
Q ss_pred ceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027113 93 LKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 157 (228)
Q Consensus 93 ~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~ 157 (228)
.-.++-..|++.....+.. ..+++++. + ..+.||+|.+..+-..|+..+..|+..
T Consensus 51 ~~cvfkc~VsreTEccRVG--~~SfliTl-g-------~nSlLl~F~s~~df~~F~n~lk~cr~~ 105 (114)
T PF11531_consen 51 CVCVFKCTVSRETECCRVG--KQSFLITL-G-------CNSLLLQFASPADFSSFHNILKRCRNQ 105 (114)
T ss_dssp --EEEEEEEETTSEEEEET--TTEEEEEE-T-------TEEEEEE-SSHHHHHHHHHHHCCCTT-
T ss_pred CEEEEEEEEcCCcceeEec--ceEEEEEe-c-------CCeEEEEecCHHHHHHHHHHHHHHhCC
Confidence 3455667777777776642 24666664 2 247999999999999999988777643
No 25
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=41.73 E-value=1.6e+02 Score=22.65 Aligned_cols=68 Identities=6% Similarity=0.114 Sum_probs=39.7
Q ss_pred CeEEEEEEeCCcceEEeeeeecCCceeee-cCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 81 GKVRLVMRQSKTLKICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 81 gk~RIVMR~d~t~KV~lN~~I~~~M~l~~-~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
..+||+ ...+..++.+|+|..=--+.. ...+.+.+-|.+.|- +.....-++++..+ .|.++..+|..|
T Consensus 61 ~gI~v~--~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~--~~~~~~CHVF~~~~--~A~~i~~~i~~a 129 (140)
T PF00640_consen 61 DGIKVI--DPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDP--RSSRFYCHVFKCED--QAQEICQAIGQA 129 (140)
T ss_dssp TEEEEE--ETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEET--SSSCEEEEEEEESS--CHHHHHHHHHHH
T ss_pred CeEEEe--cCccccccccCCccceEEEEecCCCcceEEEEEeccC--CCCccccEeeeHhh--HHHHHHHHHHHH
Confidence 345555 334578888999876333333 223345566655553 33456778888887 566555555444
No 26
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=38.96 E-value=43 Score=26.11 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=20.3
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 122 ~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
+||..|. ..=.|||.+++.|+.++.++...
T Consensus 31 VD~~~G~---~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 31 VDFSRGD---TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EE--TT----SEEEEEESS---HHHHHHHHHHT
T ss_pred EEecCCC---CEEEEEECCcchHHHHHHHHHhc
Confidence 4888774 35779999999999999999887
No 27
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=37.47 E-value=1.8e+02 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=35.2
Q ss_pred eCCcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHH
Q 027113 89 QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFM 148 (228)
Q Consensus 89 ~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~ 148 (228)
...|..++.||+|..=--+.+....+|.+.|.|-+ +++ .-..|+++ ++..|+...
T Consensus 68 D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~-~~~--~H~f~~~k--~~k~A~~i~ 122 (139)
T cd01215 68 DEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGE-PGG--KHRFYGIK--TAQAADQVV 122 (139)
T ss_pred cCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEc-CCC--cEEEEEEE--hHHcchhhh
Confidence 34588999999999744455555667888888876 233 34455554 555554433
No 28
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=32.02 E-value=1.7e+02 Score=20.20 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=22.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 132 ELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 132 e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
..|.+.+.|.+.....+.+|+.+.
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 679999999999999999999875
No 29
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=27.59 E-value=16 Score=30.36 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=28.7
Q ss_pred CeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEe
Q 027113 81 GKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (228)
Q Consensus 81 gk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a 121 (228)
|+-++.+|+|+..-..||....+.+.+.+ ++|.+.|+.
T Consensus 17 G~G~~fVR~DGkvf~FcssKC~k~f~~kR---nPRKlkWT~ 54 (131)
T PRK14891 17 GTGTMFVRKDGTVLHFVDSKCEKNYDLGR---EARDLEWTE 54 (131)
T ss_pred CCCcEEEecCCCEEEEecHHHHHHHHccC---CCccchhHH
Confidence 55677888888776777888877776655 567899984
No 30
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=26.26 E-value=2.8e+02 Score=20.70 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred CeEEEEEEeCCcceEEeeeeecCCceee-ecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027113 81 GKVRLVMRQSKTLKICANHLVLPMMSVQ-EHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 156 (228)
Q Consensus 81 gk~RIVMR~d~t~KV~lN~~I~~~M~l~-~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e 156 (228)
..+||+=. .+..++.+|+|.. +.+- ....+.+.+.|.+.+... ....-++++..+. |+.+...|..+-+
T Consensus 51 ~gv~l~d~--~~~~~l~~~~l~~-Is~~~~~~~~~~~F~~i~~~~~~--~~~~CHvF~c~~~--a~~i~~~l~~af~ 120 (123)
T cd00934 51 DGVKLIDP--KTKEVLASHPIRR-ISFCAADPDDLRIFAFIAREPGS--SRFECHVFKCEKV--AEPIALTLGQAFQ 120 (123)
T ss_pred CcEEEEeC--CCCcEEEeeccce-EEEEECCCCCCcEEEEEEEcCCC--CcEEEEEEEeCch--HHHHHHHHHHHHH
Confidence 34554433 2467888887643 3332 222345567777666432 3567788888777 8888887776643
No 31
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=25.87 E-value=3.9e+02 Score=22.27 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=42.3
Q ss_pred CCeEEEEEEe----------CCcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHH
Q 027113 80 TGKVRLVMRQ----------SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 149 (228)
Q Consensus 80 tgk~RIVMR~----------d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~ 149 (228)
...+||+.+. +-+..+++||+|..=--+.......+.+.+.|-|-+. ....-+++.......|....-
T Consensus 51 ~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~~~--~~~~ChvF~~~k~~~A~~I~~ 128 (140)
T cd01270 51 VDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDGAS--NTFKCNVFKSHKKSQAMRIVR 128 (140)
T ss_pred cCcEEEEecccccccccccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCCCC--CceEEEEEEEcChhhHHHHHH
Confidence 3457777753 3467899999997533333334455667777776322 234445555544445666665
Q ss_pred HHHHH
Q 027113 150 MVHEV 154 (228)
Q Consensus 150 ~~ee~ 154 (228)
+|-+|
T Consensus 129 TIGqA 133 (140)
T cd01270 129 TVGQA 133 (140)
T ss_pred HHHHH
Confidence 54443
No 32
>PF15411 PH_10: Pleckstrin homology domain
Probab=25.20 E-value=1.3e+02 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.8
Q ss_pred eeEEEEEeCCHHHHHHHHHH
Q 027113 131 DELFCIRFGSVENCKSFMEM 150 (228)
Q Consensus 131 ~e~~lIRFksaE~A~eF~~~ 150 (228)
...|.|||+|.+..+.+..+
T Consensus 96 ~~~F~lrf~nee~l~~W~~~ 115 (116)
T PF15411_consen 96 LENFTLRFRNEEQLEQWRSA 115 (116)
T ss_pred CceEEEEeCCHHHHHHHHhh
Confidence 56899999999988887664
No 33
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=24.83 E-value=88 Score=23.80 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEEEEeCCcceEEeeeeecCCc
Q 027113 80 TGKVRLVMRQSKTLKICANHLVLPMM 105 (228)
Q Consensus 80 tgk~RIVMR~d~t~KV~lN~~I~~~M 105 (228)
.+..||++|+|. +++||.+++-+.
T Consensus 29 GNv~Ri~Ikk~~--~tll~iPlt~gv 52 (84)
T PF14242_consen 29 GNVTRIIIKKDD--KTLLDIPLTAGV 52 (84)
T ss_pred cCeEEEEEEcCC--eEEEEeeeehHH
Confidence 367899999986 999999998853
No 34
>PF00511 PPV_E2_C: E2 (early) protein, C terminal; InterPro: IPR000427 E2 is an early regulatory protein found in the dsDNA papillomaviruses. The viral genome is a 7.9-kb circular DNA that codes for at least eight early and two late (capsid) proteins. The products of the early genes E6 and E7 are oncoproteins that destabilise the cellular tumour suppressors p53 and pRB. The product of the E1 gene is a helicase necessary for viral DNA replication. The products of the E2 gene play key roles in the regulation of viral gene transcription and DNA replication. During early stages of viral infection, the E2 protein represses the transcription of the oncogenes E6 and E7, reintroduction of E2 into cervical cancer cell-lines leads to repression of E6/E7 transcription, stabilisation of the tumour suppressor p53, and cell-cycle arrest at the G1 phase of the cell cycle. E2 can also induce apoptosis by a p53-independent mechanism. E2 proteins from all papillomavirus strains bind a consensus palindromic sequence ACCgNNNNcGGT present in multiple copies in the regulatory region. It can either activate or repress transcription, depending on E2RE's position with regard to proximal promoter elements. Repression occurs by sterically hindering the assembly of the transcription initiation complex. The E2 protein is composed of a C-terminal DNA-binding domain and an N-terminal trans-activation domain. E2 exists in solution and binds to DNA as a dimer The E2-DNA binding domain forms a dimeric beta-barrel, with each subunit contributing an anti-parallel 4-stranded beta-sheet "half-barrel" [, ]. The topology of each subunit is beta1-1-beta2-beta3-2-beta4. Helix 1 is the recognition helix housing all of the amino acid residues involved in direct DNA sequence specification. Upon dimerisation, strands beta2 and beta4 at the edges of each subunit participate in a continuous hydrogen-bonding network, which results in an 8-stranded beta-barrel. The dimer interface is extensive, made up of hydrogen bonds between subunits and a substantial hydrophobic beta-barrel core. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006275 regulation of DNA replication, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1JJH_C 1DBD_B 2BOP_A 1DHM_B 1A7G_E 1JJ4_B 1F9F_D 2AYG_A 2AYE_E 2AYB_A ....
Probab=24.46 E-value=71 Score=24.13 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.3
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027113 116 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 151 (228)
Q Consensus 116 a~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ 151 (228)
.|.|+..+-. +......++|-|.|.+..+.|+..+
T Consensus 33 tw~Wv~~~~~-~r~~~~rmlv~F~s~~QR~~FL~~V 67 (81)
T PF00511_consen 33 TWHWVGSDGT-ERQGRARMLVAFSSEEQREQFLKTV 67 (81)
T ss_dssp CBEBSTSTSS-TBTSCEEEEEEESSHHHHHHHHHHS
T ss_pred EEEeeCCCCC-cccCceEEEEEECCHHHHHHHHhcC
Confidence 5788753321 1134678999999999999999875
No 35
>PF14109 GldH_lipo: GldH lipoprotein
Probab=23.31 E-value=1.5e+02 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=12.3
Q ss_pred CCCCcceeceeEEEEE
Q 027113 60 DGNQWKERGAGTVKLL 75 (228)
Q Consensus 60 e~~~WkERGvG~LkLl 75 (228)
..+.|...|.|.++-.
T Consensus 77 ~~G~w~G~G~~~~~e~ 92 (131)
T PF14109_consen 77 PDGKWLGKGIGDLYEY 92 (131)
T ss_pred CCCcEeeeeEeEeEEE
Confidence 3579999999986543
No 36
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=23.24 E-value=54 Score=34.61 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.5
Q ss_pred EEEeeeEEEEccCCCCcceeceeEEEEE
Q 027113 48 LDLKAKLYRFDKDGNQWKERGAGTVKLL 75 (228)
Q Consensus 48 f~~RaKLyrfdke~~~WkERGvG~LkLl 75 (228)
+..+.=+|+||...+.|.+.|+|.|+-.
T Consensus 205 ~gd~IPAW~FD~ktG~Wv~~G~G~Vk~~ 232 (807)
T PF10577_consen 205 HGDSIPAWRFDEKTGAWVKSGLGMVKRE 232 (807)
T ss_pred CCCeeeeeEecCCcceeEecceEEEEee
Confidence 4456678999998899999999999864
No 37
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.63 E-value=4.5e+02 Score=21.82 Aligned_cols=64 Identities=5% Similarity=-0.002 Sum_probs=38.5
Q ss_pred CcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCC-ceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027113 91 KTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE-LKDELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 91 ~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge-~k~e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
.+.+|++||.+..=-.+......-+.+-|.|-|..... ....-|+....|.+.|++-+..+.++
T Consensus 60 dtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI~lti~QA 124 (129)
T cd01269 60 DTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEVMLTLKQA 124 (129)
T ss_pred CcceEEEecCccccchhhcCCCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHHHHHHHHH
Confidence 47889999986653333322223346777776643211 22334555666999999887777655
No 38
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=22.36 E-value=3.4e+02 Score=20.36 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=21.8
Q ss_pred ceeEEEEEeeCCCCeEEEEEEeCCc-ceEEeeeeecCC
Q 027113 68 GAGTVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPM 104 (228)
Q Consensus 68 GvG~LkLlk~ketgk~RIVMR~d~t-~KV~lN~~I~~~ 104 (228)
.-|.|.|.++. .+-+.+-=+.-.+ +.+-.+..|.|+
T Consensus 15 ~KG~l~l~~~~-d~l~~f~W~~r~~~~~~e~d~il~pg 51 (85)
T PF04683_consen 15 RKGLLYLYKSE-DGLLHFCWKPRDTTGEVEDDLILFPG 51 (85)
T ss_dssp S-EEEEEEETT-TS-EEEEEEETST---EEEEEEE-TT
T ss_pred CCEEEEEEECC-CCeEEEEEEEcCcCCCcccceecCCC
Confidence 35788887765 4767776665445 778888888775
No 39
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.09 E-value=2.8e+02 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH
Q 027113 132 ELFCIRFGSVENCKSFMEMVHEV 154 (228)
Q Consensus 132 e~~lIRFksaE~A~eF~~~~ee~ 154 (228)
.+|.++..|.+++...+.+|+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 57999999999999999998764
No 40
>PF13298 LigD_N: DNA polymerase Ligase (LigD); PDB: 3TA5_A 3P4H_A 3TA7_A 3N9B_A 3N9D_A 2LJ6_A 3P43_A.
Probab=21.88 E-value=1.6e+02 Score=23.38 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=19.5
Q ss_pred eeceeEEEEEeeCCCCeEEEE----EEeCCcceEEee
Q 027113 66 ERGAGTVKLLKHKVTGKVRLV----MRQSKTLKICAN 98 (228)
Q Consensus 66 ERGvG~LkLlk~ketgk~RIV----MR~d~t~KV~lN 98 (228)
++|.|++.|... |.+.++ -+.++.+++.|+
T Consensus 60 ~yG~G~v~iwD~---Gty~~~~~~~~~~~~~l~~~L~ 93 (105)
T PF13298_consen 60 EYGAGTVIIWDR---GTYEPLDPEDGLDEGKLKFRLH 93 (105)
T ss_dssp STT-EEEEEEEE---EEEEEE-HHHEEETTEEEEEEE
T ss_pred CCCceEEEEEec---cEEEECCccccccCCeEEEEEE
Confidence 578899888776 678766 345555555544
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.41 E-value=91 Score=31.02 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027113 126 DGELKDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 126 dge~k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
||-+-.-+.||+|++...|+.|+..|.-.+
T Consensus 110 d~~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 110 DGMPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred cCCCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 455556789999999999999999886543
No 42
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=20.12 E-value=35 Score=22.95 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=20.1
Q ss_pred eeeEEEEccCCCCcceeceeEEEEEee
Q 027113 51 KAKLYRFDKDGNQWKERGAGTVKLLKH 77 (228)
Q Consensus 51 RaKLyrfdke~~~WkERGvG~LkLlk~ 77 (228)
.-+||+|+- +..+|-||-|-|++|..
T Consensus 15 s~~L~r~~i-~Ed~K~~~~~~L~FN~~ 40 (43)
T PF09200_consen 15 SDKLFRADI-SEDYKTRGRKLLRFNGP 40 (43)
T ss_dssp CCCCCCCCC-CCCCCCTCCCCECEEEC
T ss_pred hhhhhheec-cccccccceeEEEccCc
Confidence 347888875 35899999999999764
Done!