Query 027114
Match_columns 228
No_of_seqs 70 out of 72
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kx2_A MTH1821, putative uncha 14.2 53 0.0018 25.0 0.8 14 16-29 20-33 (96)
2 2l2t_A Receptor tyrosine-prote 13.1 1.7E+02 0.006 19.1 3.1 12 157-168 30-41 (44)
3 2ks1_B Epidermal growth factor 12.8 1.8E+02 0.0062 18.9 3.1 12 157-168 31-42 (44)
4 4dm5_A Osmotically inducible l 5.6 2E+02 0.0069 22.2 1.1 23 16-38 66-88 (103)
5 3bxw_B Chitinase domain-contai 5.5 2E+02 0.0068 25.8 1.2 13 125-137 185-198 (393)
6 4fs3_A Enoyl-[acyl-carrier-pro 5.0 3.6E+02 0.012 22.0 2.4 33 96-128 4-41 (256)
7 1eok_A Endo-beta-N-acetylgluco 4.9 1.2E+02 0.0042 25.8 -0.6 24 111-135 106-129 (290)
8 3fnd_A Chitinase; TIM-barrel, 4.7 1.7E+02 0.0057 25.1 0.1 13 125-137 105-118 (312)
9 2jwa_A Receptor tyrosine-prote 4.4 5.1E+02 0.017 16.9 2.3 8 157-164 31-38 (44)
10 1p90_A NAFY protein, hypotheti 4.0 2.3E+02 0.0078 22.0 0.4 25 101-125 70-94 (145)
No 1
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=14.17 E-value=53 Score=25.05 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.5
Q ss_pred ceeeeeeccCcccc
Q 027114 16 PHAVYYSATPLSEY 29 (228)
Q Consensus 16 Py~i~Yk~s~LsEy 29 (228)
-||++|+-|||||.
T Consensus 20 ~~yV~y~vsgl~e~ 33 (96)
T 2kx2_A 20 LNYVRYRVSGLDEE 33 (96)
T ss_dssp EEEEEEEEESCCHH
T ss_pred ceEEEEEecCCCHH
Confidence 38999999999984
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.11 E-value=1.7e+02 Score=19.09 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=6.8
Q ss_pred HHHHHhcCCCCc
Q 027114 157 SLMWLRKNKPKT 168 (228)
Q Consensus 157 ~~mw~R~~~~~~ 168 (228)
.|.+.|+++.+.
T Consensus 30 ~~~~~RRRr~~~ 41 (44)
T 2l2t_A 30 FAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHTTCSSC
T ss_pred HHHHhhhhhhhh
Confidence 566666555443
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.77 E-value=1.8e+02 Score=18.92 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=6.8
Q ss_pred HHHHHhcCCCCc
Q 027114 157 SLMWLRKNKPKT 168 (228)
Q Consensus 157 ~~mw~R~~~~~~ 168 (228)
+|.+.|+++.+.
T Consensus 31 ~~~~~RRr~~~~ 42 (44)
T 2ks1_B 31 IGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHTTTCCS
T ss_pred HHHHhhhhHhhc
Confidence 566666555443
No 4
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=5.61 E-value=2e+02 Score=22.15 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=20.6
Q ss_pred ceeeeeeccCccccccchhHHHH
Q 027114 16 PHAVYYSATPLSEYDTLGTSVKA 38 (228)
Q Consensus 16 Py~i~Yk~s~LsEy~~~~~c~~a 38 (228)
|||+.|...|-=+.+.|-+|-..
T Consensus 66 ~Y~VsFd~~GrV~~~GF~TC~e~ 88 (103)
T 4dm5_A 66 PFYVSFDGSGKVDGSGFLSCSEL 88 (103)
T ss_dssp EEEEEECTTSBEEEEESSCHHHH
T ss_pred eEEEEECCCCCCcccchhhHHHh
Confidence 89999999999999999999763
No 5
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens}
Probab=5.46 E-value=2e+02 Score=25.82 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.0
Q ss_pred ccCCccch-HHHHH
Q 027114 125 GARGLEFT-WDYLL 137 (228)
Q Consensus 125 gaRg~eF~-Wkyi~ 137 (228)
|--|+++| |+|..
T Consensus 185 gfDGidiDfWE~p~ 198 (393)
T 3bxw_B 185 HFDGFVVEVWNQLL 198 (393)
T ss_dssp TCCEEEEECGGGCC
T ss_pred CCCCEEecccccCC
Confidence 56799999 99975
No 6
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=5.03 E-value=3.6e+02 Score=21.98 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCCCceeEee-----ehhhhhHHHHHhhhhhhhhccCC
Q 027114 96 ISQNHKFQAV-----GLGWAFADSVLHRLAPLWVGARG 128 (228)
Q Consensus 96 ~~~~~ril~~-----GlGWa~ae~v~trl~plwvgaRg 128 (228)
.+++.=+++. |||.++|+.+..+..-+.+..|.
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~ 41 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRK 41 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 3455555554 69999999999998887777775
No 7
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A*
Probab=4.91 E-value=1.2e+02 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.416 Sum_probs=14.9
Q ss_pred hHHHHHhhhhhhhhccCCccchHHH
Q 027114 111 FADSVLHRLAPLWVGARGLEFTWDY 135 (228)
Q Consensus 111 ~ae~v~trl~plwvgaRg~eF~Wky 135 (228)
||+++...++--+ |--|+|+||||
T Consensus 106 fa~s~~~~~l~~y-g~DGiDiDwEy 129 (290)
T 1eok_A 106 YGDAIKSIVIDKW-KLDGISLDIEH 129 (290)
T ss_dssp HHHHHHHHHTTTT-CCCEEEEECCC
T ss_pred HHHHHHHHHHHhc-CCCcEEEecCC
Confidence 3444444333333 55789999999
No 8
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A
Probab=4.75 E-value=1.7e+02 Score=25.13 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=10.3
Q ss_pred ccCCccchHH-HHH
Q 027114 125 GARGLEFTWD-YLL 137 (228)
Q Consensus 125 gaRg~eF~Wk-yi~ 137 (228)
|--|+|+||+ |-.
T Consensus 105 ~~DGiDiDwE~~p~ 118 (312)
T 3fnd_A 105 KLDGFDIDYEEYDN 118 (312)
T ss_dssp TCSEEEECCCCCTT
T ss_pred CCCeEEEeeeeCCC
Confidence 5579999999 753
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=4.45 E-value=5.1e+02 Score=16.85 Aligned_cols=8 Identities=0% Similarity=0.131 Sum_probs=3.5
Q ss_pred HHHHHhcC
Q 027114 157 SLMWLRKN 164 (228)
Q Consensus 157 ~~mw~R~~ 164 (228)
+..|.||+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34455433
No 10
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=3.99 E-value=2.3e+02 Score=21.99 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=20.4
Q ss_pred eeEeeehhhhhHHHHHhhhhhhhhc
Q 027114 101 KFQAVGLGWAFADSVLHRLAPLWVG 125 (228)
Q Consensus 101 ril~~GlGWa~ae~v~trl~plwvg 125 (228)
-+++.|+|=...+.+-.+-+-...+
T Consensus 70 vvi~~~iG~~a~~~L~~~GI~v~~~ 94 (145)
T 1p90_A 70 VLYVVSIGGPAAAKVVRAGIHPLKK 94 (145)
T ss_dssp EEEESBCCHHHHHHHHHTTCEEEEC
T ss_pred EEEECCCCHHHHHHHHHcCCEEEEe
Confidence 5677789999999888888877766
Done!