BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027116
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 33/172 (19%)
Query: 25 EGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCC--QWERVECNETIG--RVIKLDL 80
E C Q++ ALLQIK L +W+ +DCC W V C+ RV LDL
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDL 57
Query: 81 A--------QIRKWESAEWYMN--------------ASLFTPFQQLESLDLTWNSIAGCV 118
+ I + Y+N QL L +T +++G +
Sbjct: 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 119 ENKGLDRLSRLNNLKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSV 170
D LS++ L L +N + ++ NR++G++
Sbjct: 118 P----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 45 DQHLQNWVDDENYSDCCQWERVECNETIGRVI--KLDLAQIRKWESAEWYMNASLFTPFQ 102
D L+ DDE QW++++ + I ++ KL L++ WE W + A P
Sbjct: 79 DVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPIT 138
Query: 103 QLE 105
+E
Sbjct: 139 AIE 141
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 79 DLAQIRKWE-SAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHL 137
+L +I + E S N S Q +++LDLT I L+ L+NL+ L+L
Sbjct: 89 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYL 142
Query: 138 DFNWFNN 144
D N N
Sbjct: 143 DLNQITN 149
>pdb|4G8T|A Chain A, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|B Chain B, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|C Chain C, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|D Chain D, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
Length = 464
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 14 FILLVVKGWWSEGCLEQERSALLQIKH-FFNGDQHLQNWVDDENYSDCCQWERVECNE-- 70
F+ + V +G Q+R A+ + + FF GD+ +D C W RV E
Sbjct: 145 FLGVTVASLLGDG---QQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAM 201
Query: 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESL 107
T V++L A K+ ++ + + F++ E++
Sbjct: 202 TPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAV 238
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 79 DLAQIRKWE-SAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHL 137
+L +I + E S N S Q +++LDLT I L+ L+NL+ L+L
Sbjct: 83 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYL 136
Query: 138 DFNWFNN 144
D N N
Sbjct: 137 DLNQITN 143
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI 146
+ES+ LT S+A +ENK D+ L + +F+ L N+ + ++
Sbjct: 339 VESVKLT-KSVATAIENKDFDKAISLRDTEFIELYENFLSTTV 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,055,640
Number of Sequences: 62578
Number of extensions: 208456
Number of successful extensions: 469
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 7
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)