Query 027116
Match_columns 228
No_of_seqs 317 out of 2770
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 7.1E-25 1.5E-29 205.3 17.8 177 28-218 27-226 (968)
2 PLN03150 hypothetical protein; 99.7 6.3E-17 1.4E-21 144.7 14.4 159 24-193 366-529 (623)
3 PLN00113 leucine-rich repeat r 99.7 4.5E-16 9.8E-21 146.3 11.0 139 72-220 92-252 (968)
4 KOG4194 Membrane glycoprotein 99.6 1.3E-17 2.9E-22 142.0 -1.1 122 99-225 314-437 (873)
5 KOG0617 Ras suppressor protein 99.6 9.3E-17 2E-21 118.0 -3.8 136 72-222 32-191 (264)
6 KOG4194 Membrane glycoprotein 99.5 4.4E-15 9.5E-20 126.8 3.6 143 71-224 123-265 (873)
7 KOG0617 Ras suppressor protein 99.5 3.6E-16 7.8E-21 114.9 -4.7 111 96-215 96-210 (264)
8 PF14580 LRR_9: Leucine-rich r 99.5 5.1E-14 1.1E-18 105.9 3.9 123 74-211 20-147 (175)
9 KOG0472 Leucine-rich repeat pr 99.5 1.9E-14 4.1E-19 118.2 1.6 143 73-225 388-548 (565)
10 PF14580 LRR_9: Leucine-rich r 99.4 1.9E-13 4.1E-18 102.8 6.0 114 98-220 15-129 (175)
11 KOG4237 Extracellular matrix p 99.4 8.6E-14 1.9E-18 114.0 2.3 46 71-121 65-110 (498)
12 KOG0444 Cytoskeletal regulator 99.4 3.9E-14 8.5E-19 122.2 -0.8 118 95-221 143-285 (1255)
13 PLN03150 hypothetical protein; 99.4 1.4E-12 3.1E-17 116.9 9.0 107 103-215 419-526 (623)
14 KOG0444 Cytoskeletal regulator 99.3 1.5E-13 3.3E-18 118.6 -1.7 136 72-221 102-262 (1255)
15 KOG0472 Leucine-rich repeat pr 99.3 4.1E-14 8.8E-19 116.2 -5.6 112 101-222 182-293 (565)
16 KOG1259 Nischarin, modulator o 99.3 2.5E-13 5.5E-18 108.1 -1.5 133 73-221 284-416 (490)
17 PRK15370 E3 ubiquitin-protein 99.2 2.2E-10 4.8E-15 104.1 14.8 101 103-221 200-300 (754)
18 KOG0618 Serine/threonine phosp 99.2 1.7E-12 3.7E-17 116.1 -1.1 134 73-220 359-492 (1081)
19 PF13855 LRR_8: Leucine rich r 99.1 1.9E-11 4.1E-16 76.2 2.4 60 155-216 2-61 (61)
20 cd00116 LRR_RI Leucine-rich re 99.1 2.3E-11 5E-16 100.4 2.8 13 73-85 81-93 (319)
21 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-11 6.4E-16 99.8 3.1 89 129-218 192-292 (319)
22 PF13855 LRR_8: Leucine rich r 99.1 6.2E-11 1.4E-15 73.8 3.6 59 103-165 2-60 (61)
23 PRK15370 E3 ubiquitin-protein 99.1 1.7E-10 3.8E-15 104.7 7.2 104 102-221 220-342 (754)
24 KOG4237 Extracellular matrix p 99.1 5.7E-12 1.2E-16 103.5 -2.6 116 103-224 68-184 (498)
25 PRK15387 E3 ubiquitin-protein 99.1 3.8E-10 8.3E-15 102.4 7.8 136 73-219 302-460 (788)
26 PRK15387 E3 ubiquitin-protein 99.0 8.9E-10 1.9E-14 100.0 9.2 35 74-117 223-257 (788)
27 KOG0618 Serine/threonine phosp 99.0 1.3E-11 2.8E-16 110.6 -4.5 110 102-220 359-468 (1081)
28 PLN03210 Resistant to P. syrin 99.0 3.9E-09 8.5E-14 101.1 11.7 113 98-221 630-742 (1153)
29 KOG0532 Leucine-rich repeat (L 99.0 6.3E-11 1.4E-15 101.4 -1.4 133 72-222 120-252 (722)
30 COG4886 Leucine-rich repeat (L 98.9 5E-10 1.1E-14 95.5 2.5 132 74-221 117-272 (394)
31 KOG1259 Nischarin, modulator o 98.9 3.2E-10 7E-15 90.6 -0.0 110 100-221 282-391 (490)
32 PLN03210 Resistant to P. syrin 98.8 3.5E-08 7.5E-13 94.7 12.5 106 101-215 610-715 (1153)
33 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.8E-15 98.2 -2.4 116 95-222 114-229 (722)
34 KOG1859 Leucine-rich repeat pr 98.8 8.7E-11 1.9E-15 103.2 -6.8 128 74-218 165-293 (1096)
35 KOG3207 Beta-tubulin folding c 98.7 2.5E-09 5.3E-14 89.2 0.4 144 73-220 146-317 (505)
36 PF08263 LRRNT_2: Leucine rich 98.7 2.4E-08 5.1E-13 57.4 3.9 39 29-69 2-43 (43)
37 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 87.1 3.5 125 77-217 97-222 (394)
38 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.7E-14 89.0 -1.4 112 72-189 120-232 (505)
39 KOG4579 Leucine-rich repeat (L 98.7 1.1E-09 2.3E-14 78.0 -3.1 87 100-193 51-137 (177)
40 KOG1644 U2-associated snRNP A' 98.6 5.3E-08 1.1E-12 73.7 5.6 126 76-213 22-149 (233)
41 PF12799 LRR_4: Leucine Rich r 98.6 3.3E-08 7.2E-13 57.0 3.4 39 180-220 2-40 (44)
42 KOG0531 Protein phosphatase 1, 98.6 1.2E-08 2.5E-13 87.7 1.2 110 99-220 92-202 (414)
43 KOG1909 Ran GTPase-activating 98.5 1.5E-08 3.3E-13 82.3 0.3 146 71-217 155-311 (382)
44 KOG0531 Protein phosphatase 1, 98.5 3.4E-08 7.3E-13 84.9 0.7 111 99-221 69-179 (414)
45 KOG1909 Ran GTPase-activating 98.5 3.1E-08 6.8E-13 80.5 0.0 119 73-192 92-226 (382)
46 KOG4658 Apoptotic ATPase [Sign 98.4 1.6E-07 3.4E-12 87.1 4.1 108 101-215 544-653 (889)
47 PF12799 LRR_4: Leucine Rich r 98.4 3.2E-07 6.8E-12 52.9 3.1 37 155-193 2-38 (44)
48 KOG2982 Uncharacterized conser 98.3 1.6E-07 3.4E-12 75.3 1.1 139 73-218 71-263 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 4.6E-08 1E-12 69.8 -2.4 113 72-197 52-164 (177)
50 KOG1859 Leucine-rich repeat pr 98.2 2.3E-08 4.9E-13 88.4 -5.8 106 103-220 165-270 (1096)
51 KOG1644 U2-associated snRNP A' 98.1 8.1E-06 1.8E-10 62.0 5.5 109 104-220 21-129 (233)
52 KOG2739 Leucine-rich acidic nu 98.0 4.2E-06 9E-11 65.9 2.5 105 99-212 40-151 (260)
53 PF13306 LRR_5: Leucine rich r 97.9 3.4E-05 7.4E-10 54.9 6.4 118 95-224 5-122 (129)
54 KOG4658 Apoptotic ATPase [Sign 97.9 7.1E-06 1.5E-10 76.3 3.4 109 99-216 520-630 (889)
55 COG5238 RNA1 Ran GTPase-activa 97.9 1.7E-05 3.6E-10 63.1 4.0 120 98-218 88-228 (388)
56 KOG3665 ZYG-1-like serine/thre 97.8 2.5E-05 5.4E-10 71.0 4.4 136 73-217 122-263 (699)
57 KOG2123 Uncharacterized conser 97.8 7.5E-07 1.6E-11 70.8 -5.0 101 101-210 18-123 (388)
58 KOG2739 Leucine-rich acidic nu 97.6 4.3E-05 9.3E-10 60.2 3.3 91 127-220 40-132 (260)
59 KOG2982 Uncharacterized conser 97.5 1.5E-05 3.2E-10 64.2 -0.4 112 75-191 47-158 (418)
60 PF13306 LRR_5: Leucine rich r 97.5 0.0004 8.7E-09 49.3 6.8 117 74-207 13-129 (129)
61 KOG2120 SCF ubiquitin ligase, 97.5 2.6E-06 5.7E-11 68.4 -5.2 134 73-215 185-349 (419)
62 KOG3665 ZYG-1-like serine/thre 97.5 4.1E-05 9E-10 69.6 1.6 128 72-210 147-281 (699)
63 KOG2123 Uncharacterized conser 97.5 3.9E-06 8.5E-11 66.8 -4.8 100 73-185 19-123 (388)
64 PRK15386 type III secretion pr 97.4 0.00047 1E-08 58.7 7.0 115 73-214 52-187 (426)
65 PRK15386 type III secretion pr 97.0 0.0046 1E-07 52.7 8.3 97 71-190 70-188 (426)
66 smart00369 LRR_TYP Leucine-ric 96.6 0.0015 3.1E-08 32.8 1.6 23 203-225 1-23 (26)
67 smart00370 LRR Leucine-rich re 96.6 0.0015 3.1E-08 32.8 1.6 23 203-225 1-23 (26)
68 PF13504 LRR_7: Leucine rich r 96.5 0.0016 3.5E-08 29.2 1.4 17 204-220 1-17 (17)
69 KOG2120 SCF ubiquitin ligase, 96.5 5.5E-05 1.2E-09 61.0 -6.0 89 102-193 185-274 (419)
70 PF00560 LRR_1: Leucine Rich R 96.4 0.0014 3E-08 31.5 0.9 18 205-222 1-18 (22)
71 COG5238 RNA1 Ran GTPase-activa 96.4 0.0035 7.5E-08 50.3 3.4 143 72-218 29-199 (388)
72 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.4E-08 30.9 1.1 12 132-143 2-13 (22)
73 KOG0473 Leucine-rich repeat pr 95.0 0.0003 6.4E-09 55.0 -7.3 90 96-193 36-125 (326)
74 KOG4308 LRR-containing protein 94.8 0.00021 4.6E-09 62.4 -9.6 94 74-167 116-217 (478)
75 KOG0473 Leucine-rich repeat pr 94.8 0.00038 8.1E-09 54.4 -7.3 85 71-167 40-124 (326)
76 smart00370 LRR Leucine-rich re 94.7 0.037 7.9E-07 27.5 2.4 17 155-172 3-19 (26)
77 smart00369 LRR_TYP Leucine-ric 94.7 0.037 7.9E-07 27.5 2.4 17 155-172 3-19 (26)
78 smart00365 LRR_SD22 Leucine-ri 94.0 0.055 1.2E-06 27.1 2.0 18 204-221 2-19 (26)
79 KOG3864 Uncharacterized conser 93.5 0.011 2.3E-07 45.3 -1.5 79 104-187 103-184 (221)
80 KOG1947 Leucine rich repeat pr 92.6 0.052 1.1E-06 47.2 1.2 114 100-216 186-307 (482)
81 smart00364 LRR_BAC Leucine-ric 91.8 0.11 2.5E-06 25.8 1.3 18 204-221 2-19 (26)
82 PF13516 LRR_6: Leucine Rich r 90.8 0.05 1.1E-06 26.4 -0.5 12 131-142 3-14 (24)
83 KOG4308 LRR-containing protein 90.7 0.0036 7.8E-08 54.8 -8.1 144 73-218 144-304 (478)
84 KOG1947 Leucine rich repeat pr 89.5 0.22 4.7E-06 43.3 2.0 93 99-191 211-307 (482)
85 KOG3763 mRNA export factor TAP 87.1 0.32 7E-06 42.8 1.4 65 128-193 216-284 (585)
86 smart00368 LRR_RI Leucine rich 86.0 0.64 1.4E-05 23.5 1.7 15 204-218 2-16 (28)
87 KOG3763 mRNA export factor TAP 84.3 0.67 1.4E-05 40.9 2.0 89 99-193 215-313 (585)
88 KOG3864 Uncharacterized conser 81.2 0.23 5E-06 38.3 -1.7 34 129-162 150-184 (221)
89 PF07172 GRP: Glycine rich pro 71.5 2.3 5E-05 28.6 1.2 21 1-21 1-21 (95)
90 TIGR00864 PCC polycystin catio 64.1 5.7 0.00012 42.0 2.8 32 136-167 1-32 (2740)
91 KOG4341 F-box protein containi 51.8 11 0.00024 32.6 2.1 63 152-214 370-436 (483)
92 TIGR00864 PCC polycystin catio 47.4 12 0.00026 39.8 1.9 33 108-144 1-33 (2740)
93 smart00367 LRR_CC Leucine-rich 44.0 17 0.00038 17.5 1.4 11 154-164 2-12 (26)
94 KOG4341 F-box protein containi 33.1 39 0.00085 29.4 2.6 131 73-209 320-457 (483)
95 PRK03554 tatA twin arginine tr 27.4 1.3E+02 0.0029 19.9 3.7 45 1-45 1-46 (89)
96 PRK02958 tatA twin arginine tr 26.9 1.3E+02 0.0029 19.1 3.6 35 11-45 11-46 (73)
97 PRK04561 tatA twin arginine tr 26.4 1.7E+02 0.0036 18.8 3.9 34 12-45 12-46 (75)
98 PRK01614 tatE twin arginine tr 26.0 1.5E+02 0.0033 19.4 3.7 46 1-46 1-47 (85)
99 PRK00720 tatA twin arginine tr 25.7 1.5E+02 0.0033 19.1 3.7 37 9-45 9-46 (78)
100 PF07421 Pro-NT_NN: Neurotensi 25.1 24 0.00052 25.8 0.0 57 1-62 1-62 (169)
101 PRK01833 tatA twin arginine tr 24.7 1.6E+02 0.0035 18.8 3.7 37 9-45 9-46 (74)
102 COG5510 Predicted small secret 24.2 60 0.0013 18.3 1.5 12 1-12 1-12 (44)
103 PRK00442 tatA twin arginine tr 23.1 1.6E+02 0.0035 19.7 3.6 35 11-45 11-46 (92)
104 PRK03625 tatE twin arginine tr 20.6 2E+02 0.0042 18.0 3.4 45 1-45 1-46 (67)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=7.1e-25 Score=205.35 Aligned_cols=177 Identities=26% Similarity=0.404 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHhhCCCCC-CCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCE
Q 027116 28 LEQERSALLQIKHFFNGDQ-HLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLES 106 (228)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~-~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~ 106 (228)
.+.|+.||++||+.+.++. .+.+|. ...+||.|.|++|.+ .++|+.|++++|.+.. . .+..+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~---~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISG--K---ISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccc--c---CChHHhCCCCCCE
Confidence 6689999999999998775 778994 567899999999986 5799999999998743 2 1345667777777
Q ss_pred EeCCCCCcccccCcccccccCCC----------------------CCCcEEECCCCccCcccccccCCCCCCCEEeccCc
Q 027116 107 LDLTWNSIAGCVENKGLDRLSRL----------------------NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN 164 (228)
Q Consensus 107 L~ls~n~l~~~~~~~~~~~l~~l----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 164 (228)
|++++|++.+..|... +..+ ++|++|++++|.+++..|..++.+++|++|++++|
T Consensus 98 L~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 98 INLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred EECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence 7777777765544431 2234 44555555555555555555666666666666666
Q ss_pred cccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 165 RLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 165 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
.+.+.+|. .+.++++|++|++++|.+.+.+|. .+.++++|++|++++|+++.
T Consensus 175 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 175 VLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred cccccCCh-hhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCC
Confidence 66655555 566666666666666666665555 66666666666666666653
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=6.3e-17 Score=144.68 Aligned_cols=159 Identities=29% Similarity=0.343 Sum_probs=122.0
Q ss_pred CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCceeeeEEECC--CC--CcEEEEEcCCCCcccccccccCccccc
Q 027116 24 SEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNE--TI--GRVIKLDLAQIRKWESAEWYMNASLFT 99 (228)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~~~gv~c~~--~~--~~v~~L~l~~n~l~~~~~~~~~~~~~~ 99 (228)
...+.++|..||..+|+.+..+. ..+|.++......|.|.|+.|.. .. ..|+.|+|++|.+. |. .+..+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~-~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~---ip~~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL-RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF---IPNDIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc-cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc---CCHHHh
Confidence 34667889999999999987553 24795321111123799999953 11 25889999999883 33 234578
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC-C
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS-L 178 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-l 178 (228)
.+++|+.|++++|.+.+.+|.. +..+++|+.|+|++|++++.+|+.++.+++|++|+|++|.++|.+|. .+.. .
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~ 514 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRL 514 (623)
T ss_pred CCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhcc
Confidence 8899999999999998887766 88899999999999999999999999999999999999999988887 5554 3
Q ss_pred CCCCEEEcccCCCCC
Q 027116 179 SNLEELDMSDNAINN 193 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~ 193 (228)
.++..+++.+|....
T Consensus 515 ~~~~~l~~~~N~~lc 529 (623)
T PLN03150 515 LHRASFNFTDNAGLC 529 (623)
T ss_pred ccCceEEecCCcccc
Confidence 567788888886544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=4.5e-16 Score=146.26 Aligned_cols=139 Identities=27% Similarity=0.349 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCC----------------------CCEEeCCCCCcccccCcccccccCCC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQ----------------------LESLDLTWNSIAGCVENKGLDRLSRL 129 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~----------------------L~~L~ls~n~l~~~~~~~~~~~l~~l 129 (228)
...++.|++++|++. +. ++...+..+++ |++|++++|.+++..|.. ++.+
T Consensus 92 l~~L~~L~Ls~n~~~--~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l 163 (968)
T PLN00113 92 LPYIQTINLSNNQLS--GP--IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND----IGSF 163 (968)
T ss_pred CCCCCEEECCCCccC--Cc--CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH----HhcC
Confidence 346778888888773 22 22233334444 445555555554444433 7889
Q ss_pred CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116 130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L 209 (228)
++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|. .++.+++|+.|++++|.+.+.+|. .+.++++|++|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEE
Confidence 9999999999999999999999999999999999999988887 899999999999999999998888 89999999999
Q ss_pred ECCCCcCCccc
Q 027116 210 HLGGTEIAMID 220 (228)
Q Consensus 210 ~L~~N~i~~i~ 220 (228)
++++|+++...
T Consensus 242 ~L~~n~l~~~~ 252 (968)
T PLN00113 242 DLVYNNLTGPI 252 (968)
T ss_pred ECcCceecccc
Confidence 99999987543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-17 Score=141.97 Aligned_cols=122 Identities=29% Similarity=0.395 Sum_probs=84.5
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh--hhhc
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI--KELD 176 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~ 176 (228)
+..+.|+.|+|++|+|+...+.. |..+..|++|+|++|.++......|.++.+|++|||++|.+++.+.. ..+.
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred hhcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 33444555555555555444433 44455555555555555544444566677777778877777644332 2577
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
.+++|+.|++.+|++.. +|...|.++.+|++|||.+|.|.+|...+|.
T Consensus 390 gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred cchhhhheeecCceeee-cchhhhccCcccceecCCCCcceeecccccc
Confidence 78899999999999988 8888999999999999999999999988875
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9.3e-17 Score=117.95 Aligned_cols=136 Identities=24% Similarity=0.391 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|.|++|.+... +..++.+.+|+.|++++|+++..+.. ++.+++|+.|+++-|++. ..|..|+
T Consensus 32 ~s~ITrLtLSHNKl~~v------ppnia~l~nlevln~~nnqie~lp~~-----issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV------PPNIAELKNLEVLNLSNNQIEELPTS-----ISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeec------CCcHHHhhhhhhhhcccchhhhcChh-----hhhchhhhheecchhhhh-cCccccC
Confidence 46788999999998532 33468889999999999999887665 788888888888888887 7888888
Q ss_pred CCCCCCEEeccCccccC------------------------ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116 152 GLSSLKHLSLFHNRLNG------------------------SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 207 (228)
.++.|+.|||++|++.. .+|+ .++++.+|+.|.+.+|.+-. +|. .++.+.+|+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~-lpk-eig~lt~lr 176 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLS-LPK-EIGDLTRLR 176 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhh-CcH-HHHHHHHHH
Confidence 88888888888887752 2444 56667777777777777666 666 677777777
Q ss_pred EEECCCCcCCcccCC
Q 027116 208 TLHLGGTEIAMIDGS 222 (228)
Q Consensus 208 ~L~L~~N~i~~i~~~ 222 (228)
.|.+.+|+++.+|++
T Consensus 177 elhiqgnrl~vlppe 191 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPE 191 (264)
T ss_pred HHhcccceeeecChh
Confidence 777777777777654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=4.4e-15 Score=126.84 Aligned_cols=143 Identities=27% Similarity=0.354 Sum_probs=106.0
Q ss_pred CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150 (228)
Q Consensus 71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 150 (228)
..++++.|+|.+|.|.+ +..+.++.++.|+.||||.|.|+...... |..-.++++|+|++|.|+..-...|
T Consensus 123 ~sghl~~L~L~~N~I~s-----v~se~L~~l~alrslDLSrN~is~i~~~s----fp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISS-----VTSEELSALPALRSLDLSRNLISEIPKPS----FPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cccceeEEeeecccccc-----ccHHHHHhHhhhhhhhhhhchhhcccCCC----CCCCCCceEEeeccccccccccccc
Confidence 35678889998888854 33456777888888888888887765554 6667788888888888887766778
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
.++.+|..|.|++|+++ .+|...|.++++|+.|+|..|+|.- +..-.|.++++|+.|.|..|.|..+..++|
T Consensus 194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 88888888888888887 7787777778888888888887764 222256666666666666666666666655
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.6e-16 Score=114.90 Aligned_cols=111 Identities=28% Similarity=0.398 Sum_probs=77.2
Q ss_pred ccccCCCCCCEEeCCCCCcccc-cCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGC-VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 174 (228)
..|+.++.|+.||+++|++... .|.. |..+..|+.|+|++|.|. .+|..++.+++||.|.+..|.+- ++|. .
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgn----ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-e 168 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGN----FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-E 168 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcc----hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-H
Confidence 3455555555555555555432 2222 444555555566666665 67788899999999999999998 7998 9
Q ss_pred hcCCCCCCEEEcccCCCCCCCChhhhcCCC---CCcEEECCCCc
Q 027116 175 LDSLSNLEELDMSDNAINNPVIPKDYRGLR---KLNTLHLGGTE 215 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~---~L~~L~L~~N~ 215 (228)
++.+..|+.|++.+|+++- +|. .++.+. +=+.+.+..|+
T Consensus 169 ig~lt~lrelhiqgnrl~v-lpp-el~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTV-LPP-ELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred HHHHHHHHHHhcccceeee-cCh-hhhhhhhhhhHHHHhhhhCC
Confidence 9999999999999999998 787 665442 22344555555
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.45 E-value=5.1e-14 Score=105.88 Aligned_cols=123 Identities=25% Similarity=0.280 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcccccccccCccccc-CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc-C
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFT-PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-G 151 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~ 151 (228)
+.++|+|.+|.|+.+.. ++ .+.+|+.|++++|.|+.... +..+++|++|++++|.++.. .+.+ .
T Consensus 20 ~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~l~~------l~~L~~L~~L~L~~N~I~~i-~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITKLEG------LPGLPRLKTLDLSNNRISSI-SEGLDK 85 (175)
T ss_dssp ----------------S---------TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHH
T ss_pred ccccccccccccccccc-------hhhhhcCCCEEECCCCCCccccC------ccChhhhhhcccCCCCCCcc-ccchHH
Confidence 56788888888854322 33 46788888888888887543 77788888888888888744 3333 3
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEEC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHL 211 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L 211 (228)
.+++|++|++++|++...-.-..+..+++|+.|++.+|++.. .+.+ .+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 578888888888888632111256778888888888888876 3331 3567788888764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=1.9e-14 Score=118.19 Aligned_cols=143 Identities=25% Similarity=0.351 Sum_probs=114.3
Q ss_pred CcEEEEEcCCCCcccccc------------------cccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcE
Q 027116 73 GRVIKLDLAQIRKWESAE------------------WYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF 134 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~------------------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~ 134 (228)
.-|+.+++++|++.+.+. ....+..++.+++|..|++++|.+...+.+ ++.+..|+.
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-----~~~lv~Lq~ 462 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-----MGSLVRLQT 462 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-----hhhhhhhhe
Confidence 348999999999865332 112344567788888888888888775544 777778888
Q ss_pred EECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCC
Q 027116 135 LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214 (228)
Q Consensus 135 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N 214 (228)
|+++.|+|. ..|+.+..+..++.+-.+.|++. .++++.+.++.+|..|||.+|.+.. +|. .++++.+|++|++.+|
T Consensus 463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLELDGN 538 (565)
T ss_pred ecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhh-CCh-hhccccceeEEEecCC
Confidence 888888886 67777777777777777778886 7888779999999999999999998 999 9999999999999999
Q ss_pred cCCcccCCccc
Q 027116 215 EIAMIDGSKVL 225 (228)
Q Consensus 215 ~i~~i~~~~~~ 225 (228)
+|. .|.+.++
T Consensus 539 pfr-~Pr~~iL 548 (565)
T KOG0472|consen 539 PFR-QPRHQIL 548 (565)
T ss_pred ccC-CCHHHHh
Confidence 999 5666554
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.44 E-value=1.9e-13 Score=102.84 Aligned_cols=114 Identities=31% Similarity=0.379 Sum_probs=46.0
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD 176 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 176 (228)
+.+...+++|+|++|.|+.... ++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .+......
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ---------------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccccccc------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHH
Confidence 4455678999999999987533 55 588999999999999843 46888999999999999998 67652234
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.+++|+.|++++|+|.+.-.-..+..+++|+.|++.+|++++-+
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 68999999999999987333236788999999999999998643
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=8.6e-14 Score=113.99 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=39.0
Q ss_pred CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc
Q 027116 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK 121 (228)
Q Consensus 71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 121 (228)
.+...++|+|..|+|.. +++..|+.+++|+.|||++|+|+.+.|.+
T Consensus 65 LP~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~A 110 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPDA 110 (498)
T ss_pred CCCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChHh
Confidence 35678899999999865 66788999999999999999999877765
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=3.9e-14 Score=122.24 Aligned_cols=118 Identities=31% Similarity=0.360 Sum_probs=61.8
Q ss_pred cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-------------------------ccccc
Q 027116 95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-------------------------SIFSS 149 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-------------------------~~~~~ 149 (228)
...|.++..|-+||||+|++...+|. ...+.+|++|+|++|.+.. .+|..
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 34455566666666666666655554 4556666666666665432 23333
Q ss_pred cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+..+.+|..+|+|.|.+. .+|. .+-++++|+.|+|++|+|+. +.. ......+|+.|++|.|+++.+|.
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhccccchhccchH
Confidence 444445555555555554 4444 44555555555555555554 333 33334455555555555555554
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=116.87 Aligned_cols=107 Identities=26% Similarity=0.400 Sum_probs=94.9
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
.++.|+|++|.+++..|.. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|. .++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 3678999999999888876 88999999999999999999999999999999999999999988887 899999999
Q ss_pred EEEcccCCCCCCCChhhhcCC-CCCcEEECCCCc
Q 027116 183 ELDMSDNAINNPVIPKDYRGL-RKLNTLHLGGTE 215 (228)
Q Consensus 183 ~L~L~~N~l~~~~p~~~~~~l-~~L~~L~L~~N~ 215 (228)
.|+|++|.+++.+|. .+... .++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCCh-HHhhccccCceEEecCCc
Confidence 999999999998888 66553 567788998886
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=1.5e-13 Score=118.64 Aligned_cols=136 Identities=28% Similarity=0.373 Sum_probs=103.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|||++|++.+. +..+..-+++-+|+||+|+|..++... |-++..|-.||||+|++. .+|+.+.
T Consensus 102 l~dLt~lDLShNqL~Ev------P~~LE~AKn~iVLNLS~N~IetIPn~l----finLtDLLfLDLS~NrLe-~LPPQ~R 170 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREV------PTNLEYAKNSIVLNLSYNNIETIPNSL----FINLTDLLFLDLSNNRLE-MLPPQIR 170 (1255)
T ss_pred cccceeeecchhhhhhc------chhhhhhcCcEEEEcccCccccCCchH----HHhhHhHhhhccccchhh-hcCHHHH
Confidence 34677888888887542 234556677778888888887765554 677888888888888887 6677788
Q ss_pred CCCCCCEEeccCcccc-------------------------CccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116 152 GLSSLKHLSLFHNRLN-------------------------GSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 206 (228)
.+.+|++|+|++|.+. ..+|. .+..+.+|..+|++.|.+.. +|+ .+.++++|
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~L 247 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNL 247 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCc-chH-HHhhhhhh
Confidence 8888888888888653 11343 55566778888888888887 787 78889999
Q ss_pred cEEECCCCcCCcccC
Q 027116 207 NTLHLGGTEIAMIDG 221 (228)
Q Consensus 207 ~~L~L~~N~i~~i~~ 221 (228)
+.|+||+|+|+++..
T Consensus 248 rrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 248 RRLNLSGNKITELNM 262 (1255)
T ss_pred heeccCcCceeeeec
Confidence 999999999988754
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=4.1e-14 Score=116.25 Aligned_cols=112 Identities=28% Similarity=0.339 Sum_probs=75.7
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN 180 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 180 (228)
++.|++||...|-++..+++ ++.+.+|+.|+|.+|++. ..| .|.++..|.+++++.|.+. .+|......+++
T Consensus 182 m~~L~~ld~~~N~L~tlP~~-----lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPE-----LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHhcccchhhhhcCChh-----hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence 56666667666666655554 666777777777777776 445 5666666777777777766 566655556777
Q ss_pred CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
+.+||+.+|+++. .|+ .+..+++|++||+++|.|+.+|..
T Consensus 254 l~vLDLRdNklke-~Pd-e~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 254 LLVLDLRDNKLKE-VPD-EICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ceeeecccccccc-Cch-HHHHhhhhhhhcccCCccccCCcc
Confidence 7777777777776 666 666667777777777777766654
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=2.5e-13 Score=108.08 Aligned_cols=133 Identities=26% Similarity=0.250 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++++||++|.|+.+. +...-.|.++.|++|+|.+..... +..+++|+.||||+|.++ .+...-..
T Consensus 284 q~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred hhhhhccccccchhhhh------hhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhh
Confidence 35788899999885433 235667899999999999876544 677899999999999987 44444456
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+.+++.|.|+.|.+. .+. .++.+-+|..||+++|+|...-....++++|-|+++.|.+|++..++.
T Consensus 351 LGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 788899999999997 454 788888999999999999873333468899999999999999987664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=2.2e-10 Score=104.06 Aligned_cols=101 Identities=27% Similarity=0.324 Sum_probs=66.6
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
+|+.|++++|.++..+.. + ..+|++|++++|+++ .+|..+. .+|+.|++++|.+. .+|. .+. .+|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-----l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L~ 265 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-----L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SALQ 265 (754)
T ss_pred CCcEEEecCCCCCcCChh-----h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCCC
Confidence 567777777777754432 2 246777788777776 4454443 36777777777776 6665 332 4677
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.|++++|+++. +|. .+. ++|+.|++++|+|+.+|.
T Consensus 266 ~L~Ls~N~L~~-LP~-~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 266 SLDLFHNKISC-LPE-NLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred EEECcCCccCc-ccc-ccC--CCCcEEECCCCccccCcc
Confidence 88888887775 666 332 467788888887777664
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-12 Score=116.07 Aligned_cols=134 Identities=27% Similarity=0.371 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..+..|.+.+|.+++.. ...+.++++|+.|+|++|++...+... +.++..|++|+||+|+++ .+|..+..
T Consensus 359 ~~Lq~LylanN~Ltd~c-----~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSC-----FPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred HHHHHHHHhcCcccccc-----hhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhh-hhhHHHHh
Confidence 35667777788775322 245678889999999999988766555 888999999999999998 77888889
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
++.|++|....|.+. .+| .+..++.|+.+|++.|.++..... .-...++|++||+++|.=..++
T Consensus 429 ~~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred hhhhHHHhhcCCcee-ech--hhhhcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCcccccc
Confidence 999999999999997 677 788999999999999998873322 2223379999999999743333
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.15 E-value=1.9e-11 Score=76.17 Aligned_cols=60 Identities=30% Similarity=0.559 Sum_probs=31.9
Q ss_pred CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
+|++|++++|+++ .+|...|..+++|++|++++|.++. ++.+.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 4455555555554 4454455555555555555555554 3333555555555555555543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=2.3e-11 Score=100.44 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=7.2
Q ss_pred CcEEEEEcCCCCc
Q 027116 73 GRVIKLDLAQIRK 85 (228)
Q Consensus 73 ~~v~~L~l~~n~l 85 (228)
.+++.|+++++.+
T Consensus 81 ~~L~~L~l~~~~~ 93 (319)
T cd00116 81 CGLQELDLSDNAL 93 (319)
T ss_pred CceeEEEccCCCC
Confidence 3555555555555
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=2.9e-11 Score=99.79 Aligned_cols=89 Identities=25% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCCcEEECCCCccCccc----ccccCCCCCCCEEeccCccccCccChhhhc----CCCCCCEEEcccCCCCCC----CC
Q 027116 129 LNNLKFLHLDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGSVDIKELD----SLSNLEELDMSDNAINNP----VI 196 (228)
Q Consensus 129 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~l~~L~~L~L~~N~l~~~----~p 196 (228)
+++|++|++++|.+++.. +..+..+++|++|++++|.+++........ ..+.|+.|++++|.+++. +.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 345555555555544221 122334455555555555554211110001 124555555555555421 11
Q ss_pred hhhhcCCCCCcEEECCCCcCCc
Q 027116 197 PKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 197 ~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
. .+..+++|+++++++|.++.
T Consensus 272 ~-~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 272 E-VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred H-HHhcCCCccEEECCCCCCcH
Confidence 1 23344556666666665553
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=6.2e-11 Score=73.81 Aligned_cols=59 Identities=32% Similarity=0.381 Sum_probs=27.6
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcc
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNR 165 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 165 (228)
+|++|++++|+++..++.. |.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~----f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS----FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTT----TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHH----HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444544444443333 4444455555555544444444444444444444444443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=1.7e-10 Score=104.73 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL 181 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 181 (228)
.+|++|++++|+++..+.. + ..+|+.|+|++|.+. .+|..+. .+|++|++++|+++ .+|. .+. ++|
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~-----l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPAT-----L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL 285 (754)
T ss_pred cCCCEEECCCCccccCChh-----h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence 4788999999988864332 2 246777777777776 4555443 46777777777776 4654 232 367
Q ss_pred CEEEcccCCCCCCCChhhhc-------------------CCCCCcEEECCCCcCCcccC
Q 027116 182 EELDMSDNAINNPVIPKDYR-------------------GLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 182 ~~L~L~~N~l~~~~p~~~~~-------------------~l~~L~~L~L~~N~i~~i~~ 221 (228)
+.|++++|++++ +|. .+. -.++|+.|++++|.++.+|.
T Consensus 286 ~~L~Ls~N~Lt~-LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 286 RYLSVYDNSIRT-LPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA 342 (754)
T ss_pred cEEECCCCcccc-Ccc-cchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh
Confidence 777777776665 443 111 12456667777777666654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=5.7e-12 Score=103.45 Aligned_cols=116 Identities=25% Similarity=0.299 Sum_probs=104.7
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccC-ccccCccChhhhcCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH-NRLNGSVDIKELDSLSNL 181 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~l~~L 181 (228)
....++|..|+|+.+++.+ |..+++|+.||||+|.|+.+.|.+|.++++|.+|-+-+ |+|+ .+|...|+++..|
T Consensus 68 ~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 4567999999999988887 99999999999999999999999999999988887666 9998 7999899999999
Q ss_pred CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
+.|.+.-|++.- ++.+.|..++++..|.+-+|.+..|....|
T Consensus 143 qrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 143 QRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred HHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 999999999998 666699999999999999999998887654
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=3.8e-10 Score=102.37 Aligned_cols=136 Identities=21% Similarity=0.164 Sum_probs=85.4
Q ss_pred CcEEEEEcCCCCcccccccc-------cCcccccCC----CCCCEEeCCCCCcccccCccc-----------ccccC-CC
Q 027116 73 GRVIKLDLAQIRKWESAEWY-------MNASLFTPF----QQLESLDLTWNSIAGCVENKG-----------LDRLS-RL 129 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~-------~~~~~~~~l----~~L~~L~ls~n~l~~~~~~~~-----------~~~l~-~l 129 (228)
..++.|++++|.+....... +....+..+ .+|++|++++|+++..++... +..+. ..
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~ 381 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP 381 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccc
Confidence 56777777777776644310 000111111 368888888888876432100 00000 12
Q ss_pred CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116 130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L 209 (228)
.+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|. . ..+|+.|++++|+++. +|. .+..+++|+.|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt~-LP~-sl~~L~~L~~L 450 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLTR-LPE-SLIHLSSETTV 450 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCcccc-cCh-HHhhccCCCeE
Confidence 356777777777763 3432 256778888888887 5664 2 2467788888888886 888 78889999999
Q ss_pred ECCCCcCCcc
Q 027116 210 HLGGTEIAMI 219 (228)
Q Consensus 210 ~L~~N~i~~i 219 (228)
++++|+|+..
T Consensus 451 dLs~N~Ls~~ 460 (788)
T PRK15387 451 NLEGNPLSER 460 (788)
T ss_pred ECCCCCCCch
Confidence 9999998754
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.04 E-value=8.9e-10 Score=100.02 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC 117 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 117 (228)
+++.|++.+|+++..+. ..++|++|++++|+++..
T Consensus 223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc
Confidence 56777777777754221 246777888888877764
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=1.3e-11 Score=110.57 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=80.9
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL 181 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 181 (228)
+.|+.|++.+|.+++..-+. +.+.++|+.|+|++|++.......+.++..|++|+||+|+++ .+|. .+.+++.|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L 432 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRL 432 (1081)
T ss_pred HHHHHHHHhcCcccccchhh----hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhh
Confidence 44556677777776543333 677788888888888877444446777778888888888887 6775 77778888
Q ss_pred CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
++|...+|.+.. +| .+..+++|+.+|++.|+++.+-
T Consensus 433 ~tL~ahsN~l~~-fP--e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 433 HTLRAHSNQLLS-FP--ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred HHHhhcCCceee-ch--hhhhcCcceEEecccchhhhhh
Confidence 888888888776 66 5777889999999999887653
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=3.9e-09 Score=101.07 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=71.6
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 177 (228)
+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|++|++++|.....+|. .+ +
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~ 702 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-N 702 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-C
Confidence 45566777777766543333443 56677777777777655556666777777777777776543335664 22 5
Q ss_pred CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+++|+.|++++|.....+|. ...+|++|++++|.++.+|.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc
Confidence 67777777777654443443 23567788888888777765
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=6.3e-11 Score=101.42 Aligned_cols=133 Identities=28% Similarity=0.303 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.+||+.|+++.... .+. .--|+.|.+++|+++..+++ ++....|..||.+.|.+. .+|..++
T Consensus 120 L~~lt~l~ls~NqlS~lp~------~lC-~lpLkvli~sNNkl~~lp~~-----ig~~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPD------GLC-DLPLKVLIVSNNKLTSLPEE-----IGLLPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred hhHHHHhhhccchhhcCCh------hhh-cCcceeEEEecCccccCCcc-----cccchhHHHhhhhhhhhh-hchHHhh
Confidence 3456777888887753221 122 23478888888888776665 677888888888888887 6777788
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
++.+|+.|.+..|++. .+|+ .+..+ .|..||++.|++.. +|. .|.+++.|++|-|.+|++++-|+.
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~-El~~L-pLi~lDfScNkis~-iPv-~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPE-ELCSL-PLIRLDFSCNKISY-LPV-DFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCH-HHhCC-ceeeeecccCceee-cch-hhhhhhhheeeeeccCCCCCChHH
Confidence 8888999999999887 6887 66665 48999999999998 999 999999999999999999986653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=5e-10 Score=95.49 Aligned_cols=132 Identities=33% Similarity=0.436 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCC-CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQ-QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.++.+++.+|.+.+... ....+. +|+.|++++|++...+.. +..+++|+.|++++|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~~l~~~-----~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCcc------ccccchhhcccccccccchhhhhhh-----hhccccccccccCCchhh-hhhhhhhh
Confidence 46777777777654332 122332 666666666666654322 455666666666666665 33333335
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccC-----------------------CCCCCCChhhhcCCCCCcEE
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN-----------------------AINNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N-----------------------~l~~~~p~~~~~~l~~L~~L 209 (228)
.++|+.|++++|+++ .+|. .......|+.+.+++| ++.. ++. .+..++++++|
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L 260 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETL 260 (394)
T ss_pred hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhcccccccee
Confidence 555556666666555 4443 2222233444444444 3333 233 55566677777
Q ss_pred ECCCCcCCcccC
Q 027116 210 HLGGTEIAMIDG 221 (228)
Q Consensus 210 ~L~~N~i~~i~~ 221 (228)
++++|++++++.
T Consensus 261 ~~s~n~i~~i~~ 272 (394)
T COG4886 261 DLSNNQISSISS 272 (394)
T ss_pred cccccccccccc
Confidence 777777777764
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=3.2e-10 Score=90.59 Aligned_cols=110 Identities=28% Similarity=0.313 Sum_probs=87.9
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCC
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS 179 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 179 (228)
..+.|+.+|+|+|.|+..... ..-.|.++.|++|+|.+... ..++.+++|+.||||+|.++ ++.. .-..+-
T Consensus 282 TWq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhhhhh-----hhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence 346788999999999865443 56688999999999999733 44888999999999999997 5543 555677
Q ss_pred CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 180 NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 180 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+.+.|.|+.|.|.+ + . .+.++-+|..||+++|+|.+++.
T Consensus 353 NIKtL~La~N~iE~-L-S-GL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET-L-S-GLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred CEeeeehhhhhHhh-h-h-hhHhhhhheeccccccchhhHHH
Confidence 88999999999876 2 3 56778899999999999987653
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.84 E-value=3.5e-08 Score=94.66 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=73.3
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN 180 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 180 (228)
..+|+.|++++|.+...... +..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|. .+..+++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCC
Confidence 46777778877777654332 56677888888877654445553 66777888888887765556776 7778888
Q ss_pred CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116 181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215 (228)
Q Consensus 181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~ 215 (228)
|+.|++++|.....+|. .+ ++++|++|++++|.
T Consensus 683 L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 683 LEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCC
Confidence 88888887644444666 33 67788888888764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2.2e-10 Score=98.15 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=100.6
Q ss_pred cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116 95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 174 (228)
+..+.++..|++++++.|+++..+.. ++.++ |+.|-+++|+++ .+|+.++.+++|..||.+.|.+. .+|. .
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-q 184 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-Q 184 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-H
Confidence 44567888999999999999887665 45454 899999999998 78888999999999999999998 7888 8
Q ss_pred hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
++.+.+|+.|++..|++.. +|. .+..+ .|..||++.|+|+.||..
T Consensus 185 l~~l~slr~l~vrRn~l~~-lp~-El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLED-LPE-ELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred hhhHHHHHHHHHhhhhhhh-CCH-HHhCC-ceeeeecccCceeecchh
Confidence 9999999999999999998 888 77754 588999999999999865
No 34
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=8.7e-11 Score=103.21 Aligned_cols=128 Identities=26% Similarity=0.334 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc-ccCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGG 152 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~ 152 (228)
.+...+.+.|.+... .+.+.-++.++.|+|++|+++.... +..+++|++|||++|.+. .+|. ...+
T Consensus 165 ~L~~a~fsyN~L~~m------D~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsyN~L~-~vp~l~~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM------DESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSYNCLR-HVPQLSMVG 231 (1096)
T ss_pred hHhhhhcchhhHHhH------HHHHHHHHHhhhhccchhhhhhhHH------HHhcccccccccccchhc-cccccchhh
Confidence 345566777776321 2346668889999999999987652 788999999999999997 3443 2333
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
+ +|+.|.+++|.++ ++- .+.++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.+|++--
T Consensus 232 c-~L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred h-hheeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3 4999999999998 555 788899999999999988873222245667788999999998754
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.5e-09 Score=89.15 Aligned_cols=144 Identities=22% Similarity=0.193 Sum_probs=80.4
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccc----------------------ccCCCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLD----------------------RLSRLN 130 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~----------------------~l~~l~ 130 (228)
.+|+.|||++|-+..... .......+++|+.|+++.|.+.-........ .+..+|
T Consensus 146 ~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred CcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 467788888877644222 2234456777777777777665432221100 022344
Q ss_pred CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCC-CChh----hhcCCC
Q 027116 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNP-VIPK----DYRGLR 204 (228)
Q Consensus 131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~-~p~~----~~~~l~ 204 (228)
+|+.|+|..|.....-.....-+..|++|||++|++. ..+. ...+.++.|+.|+++.+.+.+. +|+. -...++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 5555555555321111122334566777777777776 2331 1566777788888887777652 1220 124567
Q ss_pred CCcEEECCCCcCCccc
Q 027116 205 KLNTLHLGGTEIAMID 220 (228)
Q Consensus 205 ~L~~L~L~~N~i~~i~ 220 (228)
+|++|++..|+|.+.+
T Consensus 302 kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWR 317 (505)
T ss_pred cceeeecccCcccccc
Confidence 8888888888875543
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=2.4e-08 Score=57.40 Aligned_cols=39 Identities=38% Similarity=0.750 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhCCC-CC-CCCCCCCCCC-CCCCceeeeEEEC
Q 027116 29 EQERSALLQIKHFFNG-DQ-HLQNWVDDEN-YSDCCQWERVECN 69 (228)
Q Consensus 29 ~~~~~~l~~~~~~~~~-~~-~~~~W~~~~~-~~~~c~~~gv~c~ 69 (228)
++|++||++||+.+.+ +. .+.+|. .. ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 6899999999999985 53 899996 33 3799999999995
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.2e-08 Score=87.09 Aligned_cols=125 Identities=37% Similarity=0.416 Sum_probs=99.5
Q ss_pred EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC-CCcEEECCCCccCcccccccCCCCC
Q 027116 77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN-NLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
.++++.+.+.. .......++.++.|++.+|.++...+. ..... +|+.|++++|.+. .+|..+..+++
T Consensus 97 ~l~~~~~~~~~------~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRS------NISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPN 164 (394)
T ss_pred eeecccccccc------CchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhcccc
Confidence 47777776521 122345568899999999999987774 45553 9999999999998 56667899999
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
|+.|++++|+++ .+|. ..+..+.|+.|++++|++.. +|. .......|+.|.+++|++.
T Consensus 165 L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 165 LKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKISD-LPP-EIELLSALEELDLSNNSII 222 (394)
T ss_pred ccccccCCchhh-hhhh-hhhhhhhhhheeccCCcccc-Cch-hhhhhhhhhhhhhcCCcce
Confidence 999999999998 7885 55588999999999999998 887 5556667999999999533
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.6e-09 Score=89.00 Aligned_cols=112 Identities=23% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc-c
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-L 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~ 150 (228)
...++++.|.+......|. .+....+++++.|||+.|-+....+-. .-...+++|+.|+++.|++....... -
T Consensus 120 ~kkL~~IsLdn~~V~~~~~----~~~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGI----EEYSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHhhhheeecCccccccch----hhhhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccccccCCccccch
Confidence 3567778888887754443 145678999999999999877644321 11567999999999999986433322 1
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccC
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N 189 (228)
..+++|+.|.++.|+++..--......+|+|+.|+|..|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 245677777777777762211112334445555555444
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.65 E-value=1.1e-09 Score=78.02 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=43.1
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCC
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS 179 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~ 179 (228)
...+|+..++++|.+...++.. -..++.++.|++++|.++ .+|+.+..++.|+.|++++|.+. ..|. .+..+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~ 123 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLI 123 (177)
T ss_pred CCceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHH
Confidence 3344555555555555443331 223345555555555555 34444555555555555555554 3443 344455
Q ss_pred CCCEEEcccCCCCC
Q 027116 180 NLEELDMSDNAINN 193 (228)
Q Consensus 180 ~L~~L~L~~N~l~~ 193 (228)
++..|+..+|.+..
T Consensus 124 ~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 124 KLDMLDSPENARAE 137 (177)
T ss_pred hHHHhcCCCCcccc
Confidence 55555555555444
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.65 E-value=5.3e-08 Score=73.69 Aligned_cols=126 Identities=25% Similarity=0.186 Sum_probs=81.5
Q ss_pred EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116 76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
++++|.+..+..++.. -.-+.....+||++|.+..... |..++.|.+|.+++|.|+.+.|.--.-+++
T Consensus 22 ~e~~LR~lkip~ienl------g~~~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~ 89 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENL------GATLDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPN 89 (233)
T ss_pred cccccccccccchhhc------cccccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccc
Confidence 4566777666433221 0113455677888888765443 777888888888888888665554445677
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh--hhhcCCCCCcEEECCC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP--KDYRGLRKLNTLHLGG 213 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~ 213 (228)
|..|.|.+|++...-....+..+|.|++|.+-+|.++..--. ..+..+++|+.||..+
T Consensus 90 l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 90 LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888888888876211112567778888888888887762111 1456778888888755
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.64 E-value=3.3e-08 Score=56.99 Aligned_cols=39 Identities=44% Similarity=0.674 Sum_probs=22.4
Q ss_pred CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 180 NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 180 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+|++|++++|+|++ +|. .+.++++|++|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCCCCc
Confidence 45666666666665 554 5666666666666666666554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-08 Score=87.72 Aligned_cols=110 Identities=37% Similarity=0.476 Sum_probs=49.5
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..+.+|+.|++.+|.|...... +..+++|++|++++|.|+.. ..+..++.|+.|++++|.++ .+. .+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~--~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS--GLESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc--CCccc
Confidence 3444555555555555443321 23345555555555555432 12334444555555555554 233 33334
Q ss_pred CCCCEEEcccCCCCCCCChhh-hcCCCCCcEEECCCCcCCccc
Q 027116 179 SNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~-~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+.|+.+++++|.+.. +.. . ...+.+++.+++.+|.+..+.
T Consensus 162 ~~L~~l~l~~n~i~~-ie~-~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVD-IEN-DELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhhcccCCcchhhh-hhh-hhhhhccchHHHhccCCchhccc
Confidence 455555555555544 222 1 234444444555555444443
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.55 E-value=1.5e-08 Score=82.31 Aligned_cols=146 Identities=20% Similarity=0.165 Sum_probs=109.4
Q ss_pred CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I 146 (228)
Q Consensus 71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~ 146 (228)
....++.+...+|++...|... ....|...+.|+.+.++.|.|...........+..+++|++|||.+|.|+.. +
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~-~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATA-LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccccccHHH-HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3567899999999997666543 3456778899999999999987544434445588899999999999999743 3
Q ss_pred ccccCCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCCC---hhhhcCCCCCcEEECCCCcCC
Q 027116 147 FSSLGGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPVI---PKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 147 ~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~l~~L~~L~L~~N~i~ 217 (228)
...+..+++|++|++++|.+... +-...-...|+|++|.+.+|.|+..-. ...+...+.|+.|+|++|.+.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 34677889999999999999733 111123447899999999999985211 113456789999999999994
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=3.4e-08 Score=84.89 Aligned_cols=111 Identities=30% Similarity=0.409 Sum_probs=92.3
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..+..++.+++..|.+...... +..+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~-----l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNH-----LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcc-----cccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-ccc--chhhc
Confidence 4567777888999988763332 78899999999999999843 333788999999999999998 565 67888
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+.|+.|++++|.|.. +. .+..++.|+.+++++|+++.++.
T Consensus 140 ~~L~~L~l~~N~i~~-~~--~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 140 TLLKELNLSGNLISD-IS--GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhheeccCcchh-cc--CCccchhhhcccCCcchhhhhhh
Confidence 889999999999997 43 46669999999999999999887
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=3.1e-08 Score=80.50 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc---------cccccCCCCCCcEEECCCCccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK---------GLDRLSRLNNLKFLHLDFNWFN 143 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls~n~l~ 143 (228)
++++.||||+|-+...|...+ ...++.+..|+.|.+.+|.+....... .......-++|+++..++|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 389999999998865443211 234566778888888888775322211 0111345567777777777764
Q ss_pred cc----cccccCCCCCCCEEeccCccccCc---cChhhhcCCCCCCEEEcccCCCC
Q 027116 144 NS----IFSSLGGLSSLKHLSLFHNRLNGS---VDIKELDSLSNLEELDMSDNAIN 192 (228)
Q Consensus 144 ~~----~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~~l~~L~~L~L~~N~l~ 192 (228)
.. +...|...+.|+.+.++.|.+... +-...+..+++|++|||.+|-++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 32 112344445555555555555311 11124455555555555555554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=1.6e-07 Score=87.10 Aligned_cols=108 Identities=23% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCCCCEEeCCCCC--cccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 101 FQQLESLDLTWNS--IAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 101 l~~L~~L~ls~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
.+.|++|-+..|. +....... |..++.|++|||++|.--+.+|..++.+-+|++|++++..++ .+|. .+.++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence 3467777777775 33333322 667888888888887766688888888888888888888887 7887 88888
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~ 215 (228)
..|.+||+..+.....++. ....+++|++|.+..-.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred Hhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 8888888888776554444 66668888888775543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=3.2e-07 Score=52.87 Aligned_cols=37 Identities=38% Similarity=0.634 Sum_probs=16.9
Q ss_pred CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
+|++|++++|+++ .+|+ .++++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCC
Confidence 3445555555554 3443 34555555555555555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.6e-07 Score=75.28 Aligned_cols=139 Identities=21% Similarity=0.253 Sum_probs=80.9
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc-ccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLG 151 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~ 151 (228)
.+|.++||.+|.|+.... ....+..+|+|++|+++.|++...+... -....+|++|-|.+..+...... .+.
T Consensus 71 ~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 467788888887754332 2345677888888888888876654431 12345566666655555432222 234
Q ss_pred CCCCCCEEeccCccc-----------------------------------------------------cCccChhhhcCC
Q 027116 152 GLSSLKHLSLFHNRL-----------------------------------------------------NGSVDIKELDSL 178 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l-----------------------------------------------------~~~~p~~~~~~l 178 (228)
.+|.+++|+++.|.+ ...-.......+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 455555555555522 111111123345
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
|.+..|+|+.|+|.+....+.+.++++|..|.+++|++.+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5566677777777764444467788888888888888754
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=4.6e-08 Score=69.77 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=88.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.+++++|.+.+... .....++.++.|++++|.+...+.+ +..++.|+.|+++.|.+. ..|..+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~-----kft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPK-----KFTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCCH-----HHhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccCccc-cchHHHH
Confidence 5689999999999976433 3445677899999999999886654 888999999999999998 7778888
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP 197 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~ 197 (228)
.+.+|..|+..+|.+. ++|- .+-.-..+-..++.++.+.+.-+.
T Consensus 121 ~L~~l~~Lds~~na~~-eid~-dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARA-EIDV-DLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred HHHhHHHhcCCCCccc-cCcH-HHhccccHHHHHhcCCcccccCcc
Confidence 8999999999999997 7887 343333444456677777764443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.3e-08 Score=88.39 Aligned_cols=106 Identities=26% Similarity=0.334 Sum_probs=84.3
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
.|...++++|.+...... +.-++.++.|+|++|+++.. ..+..+++|++|||++|.+. .+|...-..+ +|.
T Consensus 165 ~L~~a~fsyN~L~~mD~S-----Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDES-----LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHHH-----HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hhe
Confidence 466677888887654433 67789999999999999854 37889999999999999998 7775333333 499
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.|.+.+|.++. + . .+.++.+|+.||++.|-|.+..
T Consensus 236 ~L~lrnN~l~t-L-~-gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 236 LLNLRNNALTT-L-R-GIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred eeeecccHHHh-h-h-hHHhhhhhhccchhHhhhhcch
Confidence 99999999986 2 2 5778999999999999887644
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=8.1e-06 Score=62.04 Aligned_cols=109 Identities=24% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183 (228)
Q Consensus 104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 183 (228)
=+.+++.+.++.....- -....+...+||++|.+-. -..|..++.|.+|.+.+|+|+ .+.+..-..+++|..
T Consensus 21 e~e~~LR~lkip~ienl-----g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENL-----GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKT 92 (233)
T ss_pred ccccccccccccchhhc-----cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccce
Confidence 34567777666442221 1235577889999999852 246888999999999999999 566634455688999
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
|.|.+|.|.....-.-+..+++|++|.+-+|+++.-.
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 9999999886322224678899999999999987643
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.98 E-value=4.2e-06 Score=65.86 Aligned_cols=105 Identities=25% Similarity=0.277 Sum_probs=67.1
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC--ccCcccccccCCCCCCCEEeccCccccC--ccChhh
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN--WFNNSIFSSLGGLSSLKHLSLFHNRLNG--SVDIKE 174 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~ 174 (228)
..+..|+.+.+.+..++.... +..+++|+.|.++.| .+.+-.+.....+++|+++++++|++.. +++ .
T Consensus 40 d~~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--p 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--P 111 (260)
T ss_pred ccccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--h
Confidence 444556666666666554333 666778888888888 5544444444455888888888888761 233 4
Q ss_pred hcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECC
Q 027116 175 LDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLG 212 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~ 212 (228)
+..+.+|..|++.+|..+. ... ..|.-+++|++|+-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 5566777888888887766 322 146667777777643
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.93 E-value=3.4e-05 Score=54.93 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=55.3
Q ss_pred cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116 95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 174 (228)
...|....+|+.+.+.. .++...... |..+++|+.+.+..+ +.......|..+++++.+.+.. .+. .++...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~----F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~ 76 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENA----FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNA 76 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTT----TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhh----ccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccc
Confidence 34566666777777664 455444443 666667777777664 5434444566666677777754 333 344445
Q ss_pred hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
+..+++|+.+++..+ +.. ++...|.+. .|+.+.+.. .++.|+...|
T Consensus 77 F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp TTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred ccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC-CccEECCccc
Confidence 666777777777654 443 444356665 677777664 5666665554
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=7.1e-06 Score=76.33 Aligned_cols=109 Identities=24% Similarity=0.219 Sum_probs=89.0
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc--cCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW--FNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD 176 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 176 (228)
.+....+...+-+|.+...... ...+.|++|-+.+|. +.....+.|..++.|+.|||++|.-.+.+|. .++
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~ 592 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIG 592 (889)
T ss_pred cchhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHh
Confidence 3345667777777877654442 345689999999996 5544555688999999999999877678998 999
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
.+-+|++|++++..+.. +|. .+.++..|.+|++..+..
T Consensus 593 ~Li~LryL~L~~t~I~~-LP~-~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGISH-LPS-GLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred hhhhhhcccccCCCccc-cch-HHHHHHhhheeccccccc
Confidence 99999999999999997 999 999999999999998764
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=1.7e-05 Score=63.14 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=70.3
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc-------------cCCCCCCCEEeccCc
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-------------LGGLSSLKHLSLFHN 164 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n 164 (228)
+.++++|+..+||.|.+....++..-+.++.-..|++|.+++|.+....-.- ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4567788888888888776666554444667777888888887764221111 123466777777777
Q ss_pred cccCccCh----hhhcCCCCCCEEEcccCCCCCCCCh----hhhcCCCCCcEEECCCCcCCc
Q 027116 165 RLNGSVDI----KELDSLSNLEELDMSDNAINNPVIP----KDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 165 ~l~~~~p~----~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~l~~L~~L~L~~N~i~~ 218 (228)
++. ..+. ..+..-..|..+.+..|.|.-.-.. ..+..+.+|+.||+..|-++.
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 765 2221 1223334566666666666532111 122345677777777776654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=2.5e-05 Score=70.98 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.||++|...-..+ | . ...-.-+|.|+.|.+++-.+.... ......++++|..||+|+.+++.. .+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~-W-~-~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG-W-P-KKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchhhcc-H-H-HHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 35666666665442111 1 0 011233677777777775553321 011145677788888888777643 56777
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh------hhhcCCCCCcEEECCCCcCC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP------KDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~N~i~ 217 (228)
+++|+.|.+.+=.+...-.-..+.++++|++||+|..+... .+. +.-..+|+|+.||.|++.++
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 77777777766666521111256677888888887766554 221 01234678888888876554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=7.5e-07 Score=70.82 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCC
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLS 179 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~ 179 (228)
+.+.+.|++-++.+.++.- ...++.|++|.||-|+|+.. +.+..+++|++|+|..|.|.+ +.+ ..+.++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence 3444555555555544321 34456666666666666533 234555666666666666652 221 1455666
Q ss_pred CCCEEEcccCCCCCCCChh----hhcCCCCCcEEE
Q 027116 180 NLEELDMSDNAINNPVIPK----DYRGLRKLNTLH 210 (228)
Q Consensus 180 ~L~~L~L~~N~l~~~~p~~----~~~~l~~L~~L~ 210 (228)
+|+.|+|..|.-.+.-+.. .+.-+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666666655533321 234456665554
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=4.3e-05 Score=60.25 Aligned_cols=91 Identities=23% Similarity=0.353 Sum_probs=66.3
Q ss_pred CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCc--cccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCC
Q 027116 127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN--RLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR 204 (228)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 204 (228)
..+..|+.|.+.+..++.. ..+..+++|+.|.++.| ++.+.++. ....+|+|+++++++|+++..-.-..+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3455666667777666532 45788899999999999 66656665 5566699999999999998521112356677
Q ss_pred CCcEEECCCCcCCccc
Q 027116 205 KLNTLHLGGTEIAMID 220 (228)
Q Consensus 205 ~L~~L~L~~N~i~~i~ 220 (228)
+|..|++.+|..+...
T Consensus 117 nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLD 132 (260)
T ss_pred chhhhhcccCCccccc
Confidence 8999999999877643
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=1.5e-05 Score=64.19 Aligned_cols=112 Identities=28% Similarity=0.231 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCC
Q 027116 75 VIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154 (228)
Q Consensus 75 v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 154 (228)
..-+-+.+..|...|..... -...++++.+||.+|.|+....-. ..+.++|.|++|+++.|.+...+-..-..+.
T Consensus 47 ~ellvln~~~id~~gd~~~~---~~~~~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLF---GSSVTDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred hhhheecCCCCCcchhHHHH---HHHhhhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCcCCCccccCccccc
Confidence 33456667777666653221 134678999999999998653211 1167899999999999999854433224677
Q ss_pred CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCC
Q 027116 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l 191 (228)
+|++|-|.+..+...-....+..+|.++.|+++.|.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 9999999999887443333677788888888888843
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.52 E-value=0.0004 Score=49.33 Aligned_cols=117 Identities=14% Similarity=0.274 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 153 (228)
+++.+.+.. .+.. +....|..++.|+.+.+..+ +....... |..++.++.+.+.+ .+.......|..+
T Consensus 13 ~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 13 NLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp T--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCEEEECC-CeeE-----eChhhccccccccccccccc-ccccceee----eecccccccccccc-ccccccccccccc
Confidence 567777764 3432 44567889989999999885 66655554 88898999999976 4443444567889
Q ss_pred CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207 (228)
Q Consensus 154 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 207 (228)
++|+.+++..+ +. .++...+.+. +++.+.+.. .+.. ++...|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~-i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITK-IEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS-----GGG------
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccE-ECCccccccccCC
Confidence 99999999776 55 5666578887 999999876 4554 5665788877764
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=2.6e-06 Score=68.44 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCccccc-cc
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSIFS-SL 150 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~ 150 (228)
.+++.+||+...++...- -..++.+..|+.|.+.++++.+.+... +.+-.+|+.|+++.. .++..... -+
T Consensus 185 sRlq~lDLS~s~it~stl----~~iLs~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL----HGILSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHH----HHHHHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHH
Confidence 457777887776642211 123456667777777777776655443 555666666666653 23211111 23
Q ss_pred CCCCCCCEEeccCccccCccC----------------------------hhhhcCCCCCCEEEcccCC-CCCCCChhhhc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVD----------------------------IKELDSLSNLEELDMSDNA-INNPVIPKDYR 201 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p----------------------------~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~ 201 (228)
..++.|++|+++++.++.+.. ......+|+|.+|||++|. ++..... .|.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~ 335 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFF 335 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHH
Confidence 455566666666665431110 0123446677777777663 3332222 455
Q ss_pred CCCCCcEEECCCCc
Q 027116 202 GLRKLNTLHLGGTE 215 (228)
Q Consensus 202 ~l~~L~~L~L~~N~ 215 (228)
.++.|++|.++.+.
T Consensus 336 kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCY 349 (419)
T ss_pred hcchheeeehhhhc
Confidence 66666666666553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=4.1e-05 Score=69.59 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-cccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSL 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~ 150 (228)
-+.+++|.+++-.+..... .....++++|..||+|+.+++.... ++.+++|++|.+.+=.+.. ..-..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl~G------IS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNLSG------ISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCcHH------HhccccHHHHhccCCCCCchhhHHHH
Confidence 4578889888877632111 2346789999999999999987633 7889999999998877753 222367
Q ss_pred CCCCCCCEEeccCccccCccCh------hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDI------KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 210 (228)
..+++|+.||+|..... ..+. +--..+|+|+.||.+++.+.+.+-+..+...++|+.+.
T Consensus 217 F~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred hcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 78999999999998765 2221 12235899999999999888754443344445554443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=3.9e-06 Score=66.83 Aligned_cols=100 Identities=31% Similarity=0.255 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc-cccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF-SSLG 151 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~ 151 (228)
..|..|++=|+++.++. ...+++.|++|.||-|.|+...+ +..+++|++|+|..|.|..... ..+.
T Consensus 19 ~~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 35666777777664433 35778999999999999988776 7889999999999999975432 2568
Q ss_pred CCCCCCEEeccCccccCccCh----hhhcCCCCCCEEE
Q 027116 152 GLSSLKHLSLFHNRLNGSVDI----KELDSLSNLEELD 185 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~----~~~~~l~~L~~L~ 185 (228)
++++|+.|.|..|...|+-+. ..+..+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999999999988766443 2466788888775
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00047 Score=58.67 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCcccccccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSIFSSLG 151 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~ 151 (228)
...+.|+++++.+...+. --.+|+.|.++++.--...|.. + .++|+.|++++| .+. .+|.
T Consensus 52 ~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred cCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccc-cccc---
Confidence 346788999887744221 1235899999875432333332 2 358899999987 444 3443
Q ss_pred CCCCCCEEeccCcccc--CccChhhhcCC------------------CCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116 152 GLSSLKHLSLFHNRLN--GSVDIKELDSL------------------SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~--~~~p~~~~~~l------------------~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 211 (228)
+|+.|+++.+... +.+|. .+..+ ++|++|++++|.... .|. .--.+|++|++
T Consensus 113 ---sLe~L~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~---~LP~SLk~L~l 184 (426)
T PRK15386 113 ---SVRSLEIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE---KLPESLQSITL 184 (426)
T ss_pred ---ccceEEeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc---cccccCcEEEe
Confidence 4666666665532 23443 22211 356677777666443 333 12247777777
Q ss_pred CCC
Q 027116 212 GGT 214 (228)
Q Consensus 212 ~~N 214 (228)
+.|
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 766
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.97 E-value=0.0046 Score=52.75 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCCcEEEEEcCCCC-cccccccccCcccccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccC--ccc
Q 027116 71 TIGRVIKLDLAQIR-KWESAEWYMNASLFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFN--NSI 146 (228)
Q Consensus 71 ~~~~v~~L~l~~n~-l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~ 146 (228)
.+..++.|+++++. +.. + +..+ .++|++|++++| .+... | ..|+.|+++.+... +.+
T Consensus 70 LP~sLtsL~Lsnc~nLts-----L-P~~L--P~nLe~L~Ls~Cs~L~sL-P----------~sLe~L~L~~n~~~~L~~L 130 (426)
T PRK15386 70 LPNELTEITIENCNNLTT-----L-PGSI--PEGLEKLTVCHCPEISGL-P----------ESVRSLEIKGSATDSIKNV 130 (426)
T ss_pred CCCCCcEEEccCCCCccc-----C-Cchh--hhhhhheEccCccccccc-c----------cccceEEeCCCCCcccccC
Confidence 35578999988743 221 1 1112 257899999988 55432 2 23445555444321 123
Q ss_pred ccccCC-----------------C-CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCC
Q 027116 147 FSSLGG-----------------L-SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190 (228)
Q Consensus 147 ~~~~~~-----------------l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~ 190 (228)
|..+.. + ++|++|++++|... .+|. .+. .+|+.|+++.+.
T Consensus 131 PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 131 PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KLP--ESLQSITLHIEQ 188 (426)
T ss_pred cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-ccc--ccCcEEEecccc
Confidence 322211 1 47889999888875 4453 222 578999988763
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.59 E-value=0.0015 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCCcEEECCCCcCCcccCCccc
Q 027116 203 LRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 203 l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
+++|++|+|++|+|+.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887764
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.59 E-value=0.0015 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCCcEEECCCCcCCcccCCccc
Q 027116 203 LRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 203 l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
+++|++|+|++|+|+.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888888887764
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.54 E-value=0.0016 Score=29.17 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=8.5
Q ss_pred CCCcEEECCCCcCCccc
Q 027116 204 RKLNTLHLGGTEIAMID 220 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~i~ 220 (228)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35667777777776654
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=5.5e-05 Score=61.02 Aligned_cols=89 Identities=26% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCc-cccCccChhhhcCCCC
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN-RLNGSVDIKELDSLSN 180 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~~l~~ 180 (228)
..|++|||++..|+...-... ++.+.+|+.|.+.++++.+.+...+..-.+|+.|+++.+ .++..--...+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~i---Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 358999999998875432221 677899999999999999888888999999999999886 3442111125677888
Q ss_pred CCEEEcccCCCCC
Q 027116 181 LEELDMSDNAINN 193 (228)
Q Consensus 181 L~~L~L~~N~l~~ 193 (228)
|..|+++.+.+..
T Consensus 262 L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 262 LDELNLSWCFLFT 274 (419)
T ss_pred HhhcCchHhhccc
Confidence 8888888887654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.44 E-value=0.0014 Score=31.54 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.9
Q ss_pred CCcEEECCCCcCCcccCC
Q 027116 205 KLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 205 ~L~~L~L~~N~i~~i~~~ 222 (228)
+|++|++++|+|+.||.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 478888888888888876
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.39 E-value=0.0035 Score=50.29 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc-------cccccCCCCCCcEEECCCCccCc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK-------GLDRLSRLNNLKFLHLDFNWFNN 144 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~l~~ 144 (228)
...++.+|||||.+.....-.+ ...+++-.+|+..+++.-.. +...+. ....+-+|++|+..+||+|.|..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4578999999999853222111 23456678888888887543 222211 12336789999999999999987
Q ss_pred ccccc----cCCCCCCCEEeccCccccCccChh-------------hhcCCCCCCEEEcccCCCCCCCChhhhc---CC-
Q 027116 145 SIFSS----LGGLSSLKHLSLFHNRLNGSVDIK-------------ELDSLSNLEELDMSDNAINNPVIPKDYR---GL- 203 (228)
Q Consensus 145 ~~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~-------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l- 203 (228)
..|+. +..-..|.+|.+++|.+. .+... ...+-|.|+++....|++.. .+...+. ..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 76654 456678999999999985 33221 23456889999999999887 5652332 12
Q ss_pred CCCcEEECCCCcCCc
Q 027116 204 RKLNTLHLGGTEIAM 218 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~ 218 (228)
..|+.+.+..|.|..
T Consensus 185 ~~lk~vki~qNgIrp 199 (388)
T COG5238 185 ENLKEVKIQQNGIRP 199 (388)
T ss_pred cCceeEEeeecCcCc
Confidence 478899998888753
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.31 E-value=0.002 Score=30.93 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=5.2
Q ss_pred CcEEECCCCccC
Q 027116 132 LKFLHLDFNWFN 143 (228)
Q Consensus 132 L~~L~Ls~n~l~ 143 (228)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.98 E-value=0.0003 Score=54.99 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=63.6
Q ss_pred ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
..+..+...+.||++.|++-..... |+.++.+..|+++.|.+. ..|+.++....+..+++..|..+ ..|. .+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~ 107 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQ 107 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cc
Confidence 3456667777788888877655444 666777777788877776 66676777777777777777776 6676 77
Q ss_pred cCCCCCCEEEcccCCCCC
Q 027116 176 DSLSNLEELDMSDNAINN 193 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~ 193 (228)
+..+.++++++.+|.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 777777777777777543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.84 E-value=0.00021 Score=62.36 Aligned_cols=94 Identities=22% Similarity=0.171 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc----ccccc
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN----SIFSS 149 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~ 149 (228)
.+..|++++|.+...|...+.......-+.+++|++..|.++......+...+.....++.++++.|.+.. .++..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 34445555555543332222111111113344444444544443333333334455666666666666521 11122
Q ss_pred cC----CCCCCCEEeccCcccc
Q 027116 150 LG----GLSSLKHLSLFHNRLN 167 (228)
Q Consensus 150 ~~----~l~~L~~L~Ls~n~l~ 167 (228)
+. ...++++|.+++|.++
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcC
Confidence 22 3455666666666554
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.77 E-value=0.00038 Score=54.43 Aligned_cols=85 Identities=19% Similarity=0.053 Sum_probs=69.6
Q ss_pred CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150 (228)
Q Consensus 71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 150 (228)
...+++.||++.|++...|. .|+-++.+..|+++.|++.-.+.+ +.....++.+++.+|..+ ..|.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhccchh-hCCccc
Confidence 35689999999998855443 356678888999999998775554 777888888899999987 778889
Q ss_pred CCCCCCCEEeccCcccc
Q 027116 151 GGLSSLKHLSLFHNRLN 167 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~ 167 (228)
+..++++++++..|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999999876
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.72 E-value=0.037 Score=27.50 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=7.6
Q ss_pred CCCEEeccCccccCccCh
Q 027116 155 SLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~ 172 (228)
+|++|+|++|+++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 3444444444444 3443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.72 E-value=0.037 Score=27.50 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=7.6
Q ss_pred CCCEEeccCccccCccCh
Q 027116 155 SLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~ 172 (228)
+|++|+|++|+++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 3444444444444 3443
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.99 E-value=0.055 Score=27.08 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.2
Q ss_pred CCCcEEECCCCcCCcccC
Q 027116 204 RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~i~~ 221 (228)
.+|+.|+++.|+|+.|+.
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 567778888888777755
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.011 Score=45.34 Aligned_cols=79 Identities=25% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc-cccccC-CCCCCCEEeccCcc-ccCccChhhhcCCCC
Q 027116 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSLG-GLSSLKHLSLFHNR-LNGSVDIKELDSLSN 180 (228)
Q Consensus 104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~ 180 (228)
++.+|-++..|....-.. +..++.++.|.+.++.--+. .-+.++ ..++|+.|++++|. |+ +--...+..+++
T Consensus 103 IeaVDAsds~I~~eGle~----L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH----LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHHHH----HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhh
Confidence 445555555554433222 45555555555555432111 001111 23455555555443 32 211113444455
Q ss_pred CCEEEcc
Q 027116 181 LEELDMS 187 (228)
Q Consensus 181 L~~L~L~ 187 (228)
|+.|.+.
T Consensus 178 Lr~L~l~ 184 (221)
T KOG3864|consen 178 LRRLHLY 184 (221)
T ss_pred hHHHHhc
Confidence 5555443
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.65 E-value=0.052 Score=47.16 Aligned_cols=114 Identities=20% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCccc----ccccCCCCCCCEEeccCcc-ccCccChh
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSI----FSSLGGLSSLKHLSLFHNR-LNGSVDIK 173 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~ 173 (228)
..+.|+.+.+..+.-..... .......+++|+.|+++.+ ...... ......+++|+.|+++++. +++..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~- 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS- 262 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-
Confidence 35667777666653221100 0011456777777777752 111111 1123445677777777777 4422211
Q ss_pred hhc-CCCCCCEEEcccCC-CCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 174 ELD-SLSNLEELDMSDNA-INNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 174 ~~~-~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
.+. .+++|+.|.+.++. +++..-......++.|++|+++++..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 222 36777777766665 45432222344567777777776553
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.81 E-value=0.11 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=14.1
Q ss_pred CCCcEEECCCCcCCcccC
Q 027116 204 RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~i~~ 221 (228)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367788888888888875
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.83 E-value=0.05 Score=26.43 Aligned_cols=12 Identities=42% Similarity=0.409 Sum_probs=4.2
Q ss_pred CCcEEECCCCcc
Q 027116 131 NLKFLHLDFNWF 142 (228)
Q Consensus 131 ~L~~L~Ls~n~l 142 (228)
+|++|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444444
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.70 E-value=0.0036 Score=54.79 Aligned_cols=144 Identities=23% Similarity=0.191 Sum_probs=82.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccc-
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIF- 147 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~- 147 (228)
..++.+++..+.+...|...+.. .+.....++.++++.|.+........... +....++++|.++++.++....
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~-~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAA-VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred HHHHHHHhhcccccccchHHHHH-HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 34555677777776555543332 33447777788888887642111111111 2346677788888877753211
Q ss_pred ---cccCCCCC-CCEEeccCccccCc----cChhhhcCC-CCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCCCc
Q 027116 148 ---SSLGGLSS-LKHLSLFHNRLNGS----VDIKELDSL-SNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGGTE 215 (228)
Q Consensus 148 ---~~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~~l-~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~ 215 (228)
..+...++ +..+++..|.+.+. +.+ .+..+ ..+++++++.|.|++.-.. ..+...+.++++.+++|+
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcCcchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 23344444 66677888877532 111 33334 5667888888887763222 134456677888888887
Q ss_pred CCc
Q 027116 216 IAM 218 (228)
Q Consensus 216 i~~ 218 (228)
+..
T Consensus 302 l~~ 304 (478)
T KOG4308|consen 302 LTD 304 (478)
T ss_pred ccc
Confidence 764
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.51 E-value=0.22 Score=43.29 Aligned_cols=93 Identities=26% Similarity=0.130 Sum_probs=42.7
Q ss_pred cCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCc-cCcccccccCC-CCCCCEEeccCcc-ccCccChhh
Q 027116 99 TPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLGG-LSSLKHLSLFHNR-LNGSVDIKE 174 (228)
Q Consensus 99 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~p~~~ 174 (228)
...++|+.|+++++ ......+.........+++|+.|+++... ++...-..+.. +++|++|.+.++. +++.--...
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 44566666666652 11111110000013345666666666655 44333233222 5566666655555 332211113
Q ss_pred hcCCCCCCEEEcccCCC
Q 027116 175 LDSLSNLEELDMSDNAI 191 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l 191 (228)
...++.|+.|+++.+..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34456666666665543
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.07 E-value=0.32 Score=42.84 Aligned_cols=65 Identities=23% Similarity=0.137 Sum_probs=28.7
Q ss_pred CCCCCcEEECCCCccCcccc--cccCCCCCCCEEeccCc--cccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 128 RLNNLKFLHLDFNWFNNSIF--SSLGGLSSLKHLSLFHN--RLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 128 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
+.+.+..+.|++|++..... .--...|+|..|+|++| .+.. .++..--....|+.|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCcccc
Confidence 34455555566665542210 01123355666666666 3321 111011122335666666666654
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.04 E-value=0.64 Score=23.51 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.5
Q ss_pred CCCcEEECCCCcCCc
Q 027116 204 RKLNTLHLGGTEIAM 218 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~ 218 (228)
++|++|+|++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777754
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.28 E-value=0.67 Score=40.94 Aligned_cols=89 Identities=22% Similarity=0.157 Sum_probs=53.5
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC--ccCcccccccC--CCCCCCEEeccCccccCccCh--
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN--WFNNSIFSSLG--GLSSLKHLSLFHNRLNGSVDI-- 172 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~-- 172 (228)
.+.+.+..+.|++|++.....-.. .-...|+|..|+|++| .+... .++. +...|++|-+.+|.+...+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ss--lsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSS--LSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred cCCcceeeeecccchhhchhhhhH--HHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 556788888999998876433111 0245788999999998 44321 2222 234588999999988643221
Q ss_pred h----hhcCCCCCCEEEcccCCCCC
Q 027116 173 K----ELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 173 ~----~~~~l~~L~~L~L~~N~l~~ 193 (228)
. ....+|+|..|| +..+..
T Consensus 291 ~yv~~i~~~FPKL~~LD--G~ev~~ 313 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD--GVEVQP 313 (585)
T ss_pred HHHHHHHHhcchheeec--CcccCc
Confidence 1 222567776554 444443
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.16 E-value=0.23 Score=38.26 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=15.3
Q ss_pred CCCCcEEECCCC-ccCcccccccCCCCCCCEEecc
Q 027116 129 LNNLKFLHLDFN-WFNNSIFSSLGGLSSLKHLSLF 162 (228)
Q Consensus 129 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls 162 (228)
.++|+.|++++| +|+...-..+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 345555555533 3443333344444555544443
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.54 E-value=2.3 Score=28.62 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=9.6
Q ss_pred CCCccchHHHHHHHHHHHHhc
Q 027116 1 MCGSKRVWVSELIFILLVVKG 21 (228)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (228)
|+.++.+++.+++++++++++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 664443333344444444444
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=64.13 E-value=5.7 Score=41.98 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=25.5
Q ss_pred ECCCCccCcccccccCCCCCCCEEeccCcccc
Q 027116 136 HLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLN 167 (228)
Q Consensus 136 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 167 (228)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666667888888888888888774
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=51.82 E-value=11 Score=32.59 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCCCCEEeccCccccCcc--C--hhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCC
Q 027116 152 GLSSLKHLSLFHNRLNGSV--D--IKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~--p--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N 214 (228)
+++.|+.+.++++.....- - ...-..+..|+.+.|++++....-....+..+++|+.+++-+.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4456666666665442110 0 0012234456666666665432122223445566666555443
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.40 E-value=12 Score=39.79 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.8
Q ss_pred eCCCCCcccccCcccccccCCCCCCcEEECCCCccCc
Q 027116 108 DLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN 144 (228)
Q Consensus 108 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 144 (228)
||++|+|+.+.+.. |..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~----F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGI----CANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHH----hccCCCceEEEeeCCcccc
Confidence 68999999887766 8889999999999999864
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.02 E-value=17 Score=17.55 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=5.2
Q ss_pred CCCCEEeccCc
Q 027116 154 SSLKHLSLFHN 164 (228)
Q Consensus 154 ~~L~~L~Ls~n 164 (228)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34445555444
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=33.10 E-value=39 Score=29.36 Aligned_cols=131 Identities=19% Similarity=0.122 Sum_probs=72.9
Q ss_pred CcEEEEEcCCCCc-ccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc-----
Q 027116 73 GRVIKLDLAQIRK-WESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----- 146 (228)
Q Consensus 73 ~~v~~L~l~~n~l-~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----- 146 (228)
.+++.+-+.+.+. +..|... .-.+.++|+.+++..+...... .....-.+++.|++|.++++......
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~----l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTM----LGRNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CceEEEeccccchhhhhhhhh----hhcCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 4566776666552 2222111 1245677888888877543211 11111356889999999876542111
Q ss_pred ccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCCCCChhhhcCCCCCcEE
Q 027116 147 FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 147 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L 209 (228)
...-..+..|+.+.|+++....+-....+..+++|+.+++-++. ++..-....-..+++++..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 11224567788899998877533222366778889998887774 2221111123355655544
No 95
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=27.42 E-value=1.3e+02 Score=19.91 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=22.7
Q ss_pred CCCccchHHHHHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 1 MCGSKRVWVSELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
|.+....-+++++++++++.+.. ...--.+=+.++..||+...+.
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e~ 46 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDD 46 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 44333333334444444455521 1112334567889999887644
No 96
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=26.94 E-value=1.3e+02 Score=19.10 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 11 ELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
+++++++++.+.. ...--.+=+.++..||+...+.
T Consensus 11 iIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~ 46 (73)
T PRK02958 11 IVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEG 46 (73)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 3334444445521 1122334568899999988654
No 97
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=26.43 E-value=1.7e+02 Score=18.75 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 12 LIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
++++++++.++. ...-..+=+.++..||+...+.
T Consensus 12 IlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~ 46 (75)
T PRK04561 12 VLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDD 46 (75)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 334444445532 1222334568899999988654
No 98
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=26.03 E-value=1.5e+02 Score=19.40 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=23.4
Q ss_pred CCCccchHHHHHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCCC
Q 027116 1 MCGSKRVWVSELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGDQ 46 (228)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 46 (228)
|.+....-+++++++++++.++. ...--.+=..++..||+...++.
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~~ 47 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRNDD 47 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence 33333333334444444455531 11123345678899999876543
No 99
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=25.66 E-value=1.5e+02 Score=19.11 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 9 VSELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
+++++++++++.++. ...--.+-..++..||+...+.
T Consensus 9 llIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~~ 46 (78)
T PRK00720 9 WLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMADD 46 (78)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 333334444444531 1112334567888999887654
No 100
>PF07421 Pro-NT_NN: Neurotensin/neuromedin N precursor; InterPro: IPR008055 Neurotensin is a 13-residue peptide transmitter, sharing significant similarity in its 6 C-terminal amino acid residues with several other neuropeptides, including neuromedin N (which is derived from the same precursor). This C-terminal region is responsible for the full biological activity, the N-terminal portion having a modulatory role. Neurotensin is distributed throughout the central nervous system, with highest levels in the hypothalamus, amygdala and nucleus accumbens. It induces a variety of effects, including: analgesia, hypothermia and increased locomotor activity. It is also involved in regulation of dopamine pathways. In the periphery, neurotensin is found in endocrine cells of the small intestine, where it leads to secretion and smooth muscle contraction []. The neurotensin/neuromedin N precursor can also be processed to produce large 125-138 amino acid peptides with the neurotensin or neuromedin N sequence at their C terminus. These large peptides appear to be less potent than their smaller counterparts, but are also less sensitive to degradation and may represent endogenous, long-lasting activators in a number of pathophysiological situations.; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 3F6K_N.
Probab=25.06 E-value=24 Score=25.80 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCccchHHHHHHHHHHHHhcccCCCCcHHHHHHH-----HHHHhhCCCCCCCCCCCCCCCCCCCce
Q 027116 1 MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSAL-----LQIKHFFNGDQHLQNWVDDENYSDCCQ 62 (228)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~W~~~~~~~~~c~ 62 (228)
|++|+...++++++.+ .+|...+.+++|..|| ..+..+-..-...+.|. .+--+.|+
T Consensus 1 m~~m~~QL~C~lLLaf---t~~~LCSDseeemkAlEadlLtnm~tSKvsKa~~P~Wk--mtLlnvC~ 62 (169)
T PF07421_consen 1 MAGMKIQLVCMLLLAF---TSWSLCSDSEEEMKALEADLLTNMYTSKVSKASAPYWK--MTLLNVCS 62 (169)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCchhHHHHHHHHHHH---HhccccCchHHHHHHHHHHHHHHHHHHHhhhccCCchh--hHHHHHHH
Confidence 6777776666543322 3332223334444443 23332221122567786 45556664
No 101
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=24.67 E-value=1.6e+02 Score=18.79 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 9 VSELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
+++++++++++.++. ...-..+=+.++..||+...+.
T Consensus 9 lliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~ 46 (74)
T PRK01833 9 LLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADD 46 (74)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444445531 1122334567888999987644
No 102
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.21 E-value=60 Score=18.32 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.0
Q ss_pred CCCccchHHHHH
Q 027116 1 MCGSKRVWVSEL 12 (228)
Q Consensus 1 m~~~~~~~~~~~ 12 (228)
||++.......+
T Consensus 1 mmk~t~l~i~~v 12 (44)
T COG5510 1 MMKKTILLIALV 12 (44)
T ss_pred CchHHHHHHHHH
Confidence 444444433333
No 103
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=23.05 E-value=1.6e+02 Score=19.68 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=19.0
Q ss_pred HHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 11 ELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
+++++++++.+.. ...--.+=+.++..||+...+.
T Consensus 11 iIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e~ 46 (92)
T PRK00442 11 VILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNED 46 (92)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 3334444445531 1112334567889999988653
No 104
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.56 E-value=2e+02 Score=17.99 Aligned_cols=45 Identities=13% Similarity=0.004 Sum_probs=22.6
Q ss_pred CCCccchHHHHHHHHHHHHhccc-CCCCcHHHHHHHHHHHhhCCCC
Q 027116 1 MCGSKRVWVSELIFILLVVKGWW-SEGCLEQERSALLQIKHFFNGD 45 (228)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 45 (228)
|.+....-+++++++++++.++. ...--.+=+.++..||++..+.
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~ 46 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDD 46 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333444444445555532 1112234457788899887654
Done!