Query 027116
Match_columns 228
No_of_seqs 317 out of 2770
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-29 4.1E-34 208.3 12.9 185 26-222 2-192 (313)
2 3rgz_A Protein brassinosteroid 99.9 7.5E-26 2.6E-30 206.0 13.0 186 23-221 5-217 (768)
3 4eco_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 198.1 11.8 181 25-221 25-322 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 1.7E-24 5.7E-29 198.4 10.7 186 24-221 263-565 (876)
5 3e6j_A Variable lymphocyte rec 99.9 3.6E-22 1.2E-26 156.7 16.3 151 56-218 14-173 (229)
6 4fcg_A Uncharacterized protein 99.9 3.1E-24 1.1E-28 177.2 2.1 181 25-220 22-222 (328)
7 3m19_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 156.5 15.6 141 73-224 35-175 (251)
8 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 156.1 15.8 139 74-223 38-200 (270)
9 2o6s_A Variable lymphocyte rec 99.9 4.5E-21 1.6E-25 148.0 15.6 148 60-218 6-162 (208)
10 2v9t_B SLIT homolog 2 protein 99.9 3.8E-21 1.3E-25 150.0 15.1 147 61-218 11-166 (220)
11 2v70_A SLIT-2, SLIT homolog 2 99.9 5.2E-21 1.8E-25 149.3 14.6 148 61-218 11-167 (220)
12 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-20 1.1E-24 164.3 15.7 142 72-224 51-193 (635)
13 2xot_A Amphoterin-induced prot 99.8 4.2E-20 1.5E-24 154.3 13.6 151 61-222 18-181 (361)
14 2o6q_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 145.2 15.7 136 73-219 85-220 (270)
15 3m19_A Variable lymphocyte rec 99.8 2E-19 7E-24 142.7 15.0 137 72-219 58-194 (251)
16 3rfs_A Internalin B, repeat mo 99.8 2.8E-19 9.6E-24 143.6 15.5 138 73-223 63-200 (272)
17 2z62_A TOLL-like receptor 4, v 99.8 3.8E-19 1.3E-23 142.9 15.5 142 72-224 27-169 (276)
18 3v47_A TOLL-like receptor 5B a 99.8 2.1E-19 7.2E-24 153.8 14.8 157 59-224 6-174 (455)
19 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-19 9.2E-24 144.4 14.6 138 73-221 32-170 (285)
20 2v9t_B SLIT homolog 2 protein 99.8 5.4E-19 1.9E-23 137.8 15.5 136 76-225 14-149 (220)
21 1p9a_G Platelet glycoprotein I 99.8 4.6E-19 1.6E-23 143.8 15.4 120 99-225 74-193 (290)
22 3vq2_A TLR4, TOLL-like recepto 99.8 4.3E-19 1.5E-23 157.2 16.5 142 72-224 31-173 (606)
23 3zyj_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 152.4 15.3 147 63-219 45-200 (440)
24 2z80_A TOLL-like receptor 2, v 99.8 9.1E-20 3.1E-24 151.6 11.3 155 58-224 27-194 (353)
25 3zyi_A Leucine-rich repeat-con 99.8 5.2E-19 1.8E-23 151.8 15.9 148 63-220 56-212 (452)
26 1p9a_G Platelet glycoprotein I 99.8 7.2E-19 2.5E-23 142.6 15.7 140 72-225 30-169 (290)
27 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.7E-23 140.9 14.5 119 97-221 100-218 (285)
28 3e6j_A Variable lymphocyte rec 99.8 2.1E-18 7E-23 135.3 15.4 142 63-224 14-155 (229)
29 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.8E-23 134.5 15.1 136 77-225 15-150 (220)
30 3rfs_A Internalin B, repeat mo 99.8 1.5E-18 5.1E-23 139.3 14.8 137 71-218 83-219 (272)
31 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-19 1.4E-23 155.4 11.4 154 60-224 3-168 (549)
32 3o6n_A APL1; leucine-rich repe 99.8 6.7E-19 2.3E-23 148.2 12.3 139 73-222 45-183 (390)
33 2xwt_C Thyrotropin receptor; s 99.8 2.6E-19 9E-24 141.0 9.1 140 72-224 30-176 (239)
34 2ell_A Acidic leucine-rich nuc 99.8 3.9E-19 1.3E-23 132.6 8.9 140 72-223 23-166 (168)
35 1w8a_A SLIT protein; signaling 99.8 2.5E-18 8.5E-23 131.2 12.9 129 77-218 12-140 (192)
36 3oja_B Anopheles plasmodium-re 99.8 1.4E-18 4.8E-23 154.0 12.7 139 73-222 51-189 (597)
37 3rgz_A Protein brassinosteroid 99.8 1.2E-18 4.1E-23 158.6 12.2 91 126-218 628-718 (768)
38 2o6s_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 129.0 15.8 135 76-224 10-144 (208)
39 2z66_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 139.0 13.7 140 74-223 102-242 (306)
40 2id5_A Lingo-1, leucine rich r 99.8 2E-18 6.8E-23 148.9 11.8 136 73-219 32-167 (477)
41 3v47_A TOLL-like receptor 5B a 99.8 5.7E-18 1.9E-22 145.0 14.3 137 73-220 275-411 (455)
42 2o6r_A Variable lymphocyte rec 99.8 1.6E-17 5.5E-22 124.9 15.1 112 101-218 27-138 (177)
43 4ezg_A Putative uncharacterize 99.8 2.7E-18 9.4E-23 131.4 10.9 110 98-217 84-194 (197)
44 2z63_A TOLL-like receptor 4, v 99.8 5.5E-18 1.9E-22 148.8 14.0 141 72-223 27-168 (570)
45 2z62_A TOLL-like receptor 4, v 99.8 4.7E-18 1.6E-22 136.5 12.1 112 72-193 51-163 (276)
46 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.2E-22 130.9 10.7 131 73-220 44-175 (197)
47 2wfh_A SLIT homolog 2 protein 99.8 1E-17 3.6E-22 127.9 13.4 126 77-217 14-139 (193)
48 1ogq_A PGIP-2, polygalacturona 99.8 4.5E-19 1.5E-23 145.3 5.8 133 73-217 76-210 (313)
49 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-17 4.8E-22 147.5 15.1 116 102-223 52-167 (635)
50 1xku_A Decorin; proteoglycan, 99.8 4.9E-17 1.7E-21 133.8 17.1 149 60-222 30-189 (330)
51 4b8c_D Glucose-repressible alc 99.7 3.7E-19 1.3E-23 161.0 4.4 183 27-223 129-335 (727)
52 3t6q_A CD180 antigen; protein- 99.7 9.5E-18 3.2E-22 148.5 13.1 139 72-221 32-170 (606)
53 3j0a_A TOLL-like receptor 5; m 99.7 6.1E-18 2.1E-22 155.4 12.1 153 61-224 14-168 (844)
54 2id5_A Lingo-1, leucine rich r 99.7 1.4E-17 4.8E-22 143.5 13.5 142 72-224 55-196 (477)
55 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 141.5 14.1 140 72-224 87-251 (440)
56 1ziw_A TOLL-like receptor 3; i 99.7 6.8E-18 2.3E-22 151.4 11.6 139 72-221 24-162 (680)
57 2z66_A Variable lymphocyte rec 99.7 2.2E-17 7.5E-22 134.4 13.2 136 72-218 125-262 (306)
58 1xku_A Decorin; proteoglycan, 99.7 4.2E-17 1.4E-21 134.2 14.7 119 96-224 165-283 (330)
59 1w8a_A SLIT protein; signaling 99.7 2.3E-17 8E-22 125.8 12.2 127 61-196 8-143 (192)
60 2xot_A Amphoterin-induced prot 99.7 2.9E-17 9.8E-22 137.1 13.6 141 65-224 15-156 (361)
61 3vq2_A TLR4, TOLL-like recepto 99.7 1.8E-17 6E-22 146.8 12.8 121 96-222 418-539 (606)
62 4fcg_A Uncharacterized protein 99.7 1.3E-17 4.4E-22 137.5 10.9 134 73-216 150-289 (328)
63 3zyi_A Leucine-rich repeat-con 99.7 4.3E-17 1.5E-21 139.8 14.1 73 150-224 214-286 (452)
64 2je0_A Acidic leucine-rich nuc 99.7 8.4E-18 2.9E-22 122.9 8.3 129 73-213 17-149 (149)
65 2o6r_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 121.9 12.8 127 60-196 6-141 (177)
66 1wwl_A Monocyte differentiatio 99.7 9.2E-18 3.1E-22 137.3 9.0 140 73-222 121-271 (312)
67 2ft3_A Biglycan; proteoglycan, 99.7 6.1E-17 2.1E-21 133.4 13.7 146 61-221 33-189 (332)
68 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.8E-22 131.6 7.1 139 73-223 55-224 (239)
69 2ft3_A Biglycan; proteoglycan, 99.7 7.4E-17 2.5E-21 132.9 12.4 123 95-224 140-284 (332)
70 1a9n_A U2A', U2A'; complex (nu 99.7 1.9E-17 6.5E-22 124.5 7.8 133 72-219 18-155 (176)
71 2z7x_B TOLL-like receptor 1, v 99.7 9.3E-17 3.2E-21 139.7 13.0 137 72-222 323-462 (520)
72 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.5E-21 120.9 13.0 122 61-193 10-140 (193)
73 2je0_A Acidic leucine-rich nuc 99.7 5.9E-17 2E-21 118.3 9.6 113 100-221 15-130 (149)
74 3o6n_A APL1; leucine-rich repe 99.7 2.9E-16 1E-20 132.0 15.0 42 178-220 247-288 (390)
75 3t6q_A CD180 antigen; protein- 99.7 1.6E-16 5.4E-21 140.7 13.7 143 72-225 56-200 (606)
76 2z63_A TOLL-like receptor 4, v 99.7 9.9E-17 3.4E-21 140.8 12.3 143 72-225 51-198 (570)
77 2z80_A TOLL-like receptor 2, v 99.7 2.5E-17 8.6E-22 136.8 8.1 139 72-221 75-215 (353)
78 1h6t_A Internalin B; cell adhe 99.7 2.6E-16 8.8E-21 127.6 13.7 128 72-220 67-194 (291)
79 3oja_B Anopheles plasmodium-re 99.7 2.8E-16 9.7E-21 139.2 15.0 86 73-167 75-160 (597)
80 1ziw_A TOLL-like receptor 3; i 99.7 2E-16 6.9E-21 141.8 13.8 123 95-223 473-603 (680)
81 1wwl_A Monocyte differentiatio 99.7 5E-17 1.7E-21 132.9 8.9 138 73-221 149-291 (312)
82 3oja_A Leucine-rich immune mol 99.7 1.6E-16 5.4E-21 137.7 12.4 129 74-217 121-250 (487)
83 1h6u_A Internalin H; cell adhe 99.7 4.1E-16 1.4E-20 127.4 14.1 109 98-220 103-211 (308)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.2E-16 7.4E-21 138.9 13.1 137 72-222 352-491 (562)
85 1h6u_A Internalin H; cell adhe 99.7 3.9E-16 1.3E-20 127.5 13.7 129 72-221 62-190 (308)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.4E-16 1.2E-20 137.6 14.3 134 73-223 52-190 (562)
87 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.9E-21 118.6 10.0 114 100-221 22-137 (168)
88 1h6t_A Internalin B; cell adhe 99.7 4.7E-16 1.6E-20 126.0 13.8 128 73-221 46-173 (291)
89 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-16 9.6E-21 128.7 12.5 112 97-217 139-250 (317)
90 1xeu_A Internalin C; cellular 99.7 4E-16 1.4E-20 124.7 12.9 127 72-220 62-188 (263)
91 3oja_A Leucine-rich immune mol 99.7 9.2E-17 3.1E-21 139.2 9.8 114 100-222 118-232 (487)
92 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-16 3.8E-21 131.2 9.7 114 100-222 118-232 (317)
93 3g39_A Variable lymphocyte rec 99.7 5.7E-16 1.9E-20 115.9 12.4 105 76-193 12-116 (170)
94 4eco_A Uncharacterized protein 99.7 5E-16 1.7E-20 138.6 14.3 139 74-222 434-584 (636)
95 4glp_A Monocyte differentiatio 99.7 3.9E-17 1.4E-21 133.4 6.0 115 101-221 144-268 (310)
96 2r9u_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 115.3 12.7 105 76-193 15-119 (174)
97 2z81_A CD282 antigen, TOLL-lik 99.7 9.3E-17 3.2E-21 140.5 8.0 138 72-219 49-211 (549)
98 1xeu_A Internalin C; cellular 99.7 4.9E-16 1.7E-20 124.2 11.5 126 72-219 40-165 (263)
99 2z7x_B TOLL-like receptor 1, v 99.7 3.7E-16 1.3E-20 135.9 11.7 137 74-224 303-441 (520)
100 4glp_A Monocyte differentiatio 99.7 1.2E-16 4.2E-21 130.5 7.7 136 72-221 144-289 (310)
101 3j0a_A TOLL-like receptor 5; m 99.6 6.4E-16 2.2E-20 142.0 11.6 138 72-218 47-188 (844)
102 4ecn_A Leucine-rich repeat pro 99.6 2.1E-15 7.3E-20 138.4 14.6 139 74-222 674-824 (876)
103 1a9n_A U2A', U2A'; complex (nu 99.6 6.9E-16 2.4E-20 115.9 9.4 115 97-221 14-130 (176)
104 4fmz_A Internalin; leucine ric 99.6 1.5E-15 5.3E-20 125.4 11.9 131 72-221 198-328 (347)
105 4ay9_X Follicle-stimulating ho 99.6 6.6E-16 2.2E-20 128.3 9.5 154 61-224 9-174 (350)
106 1m9s_A Internalin B; cell inva 99.6 2.7E-15 9.3E-20 133.0 14.0 127 72-219 64-190 (605)
107 4fmz_A Internalin; leucine ric 99.6 2.3E-15 7.9E-20 124.4 12.5 126 73-217 221-346 (347)
108 1m9s_A Internalin B; cell inva 99.6 3.1E-15 1.1E-19 132.6 12.8 130 72-222 86-215 (605)
109 3g39_A Variable lymphocyte rec 99.6 6.9E-15 2.3E-19 109.9 11.5 109 103-220 10-118 (170)
110 1dce_A Protein (RAB geranylger 99.6 6.5E-15 2.2E-19 129.7 11.4 109 103-222 442-551 (567)
111 2r9u_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 108.5 11.5 109 104-221 14-122 (174)
112 1o6v_A Internalin A; bacterial 99.6 9E-15 3.1E-19 125.8 11.5 108 99-220 284-391 (466)
113 1dce_A Protein (RAB geranylger 99.6 5.6E-15 1.9E-19 130.1 10.4 123 74-211 442-567 (567)
114 3cvr_A Invasion plasmid antige 99.6 6E-15 2.1E-19 129.8 9.5 130 62-221 49-197 (571)
115 1o6v_A Internalin A; bacterial 99.6 2.6E-14 9E-19 122.9 13.4 88 126-221 283-370 (466)
116 3bz5_A Internalin-J, INLJ; leu 99.5 1.5E-13 5.1E-18 118.1 14.7 124 73-221 64-187 (457)
117 4b8c_D Glucose-repressible alc 99.5 1.3E-15 4.3E-20 137.9 1.8 112 72-197 223-334 (727)
118 3cvr_A Invasion plasmid antige 99.5 1.8E-13 6.1E-18 120.4 13.5 101 103-225 121-228 (571)
119 4ay9_X Follicle-stimulating ho 99.5 3E-14 1E-18 118.2 8.1 142 72-224 53-222 (350)
120 3bz5_A Internalin-J, INLJ; leu 99.5 3.5E-13 1.2E-17 115.8 14.9 133 72-223 105-252 (457)
121 2ast_B S-phase kinase-associat 99.5 2.3E-15 7.9E-20 123.8 1.2 131 73-215 70-206 (336)
122 2ca6_A RAN GTPase-activating p 99.5 4E-15 1.4E-19 124.9 2.5 141 73-220 159-319 (386)
123 2ifg_A High affinity nerve gro 99.5 1.6E-13 5.3E-18 113.5 11.7 104 77-193 12-117 (347)
124 2ast_B S-phase kinase-associat 99.5 2.7E-15 9.4E-20 123.3 0.9 132 73-214 93-257 (336)
125 1jl5_A Outer protein YOPM; leu 99.5 3.6E-13 1.2E-17 115.6 13.7 105 98-220 149-253 (454)
126 3goz_A Leucine-rich repeat-con 99.5 8.4E-15 2.9E-19 122.1 2.4 143 74-218 52-210 (362)
127 2ifg_A High affinity nerve gro 99.5 3.1E-13 1.1E-17 111.7 11.6 103 106-217 12-116 (347)
128 2ca6_A RAN GTPase-activating p 99.5 6.3E-15 2.2E-19 123.7 0.5 115 102-218 159-288 (386)
129 3goz_A Leucine-rich repeat-con 99.5 1.4E-14 5E-19 120.6 2.5 147 73-221 80-242 (362)
130 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5E-21 121.8 -9.0 109 98-217 44-153 (198)
131 3g06_A SSPH2 (leucine-rich rep 99.4 6.1E-13 2.1E-17 118.2 11.9 80 130-220 221-300 (622)
132 1jl5_A Outer protein YOPM; leu 99.4 1.4E-12 5E-17 111.8 13.6 101 102-220 131-231 (454)
133 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-13 3.8E-18 123.0 6.4 102 101-221 80-198 (622)
134 1z7x_W Ribonuclease inhibitor; 99.4 2.1E-14 7.1E-19 122.9 -1.6 120 98-219 280-413 (461)
135 1z7x_W Ribonuclease inhibitor; 99.4 1.7E-14 5.8E-19 123.5 -2.2 90 126-217 280-383 (461)
136 3sb4_A Hypothetical leucine ri 99.4 3.8E-12 1.3E-16 104.6 11.1 93 129-225 225-318 (329)
137 3un9_A NLR family member X1; l 99.3 7.3E-14 2.5E-18 117.0 -0.2 142 73-220 101-255 (372)
138 3sb4_A Hypothetical leucine ri 99.3 3.6E-12 1.2E-16 104.7 9.6 144 73-225 49-294 (329)
139 1ds9_A Outer arm dynein; leuci 99.3 6.2E-15 2.1E-19 112.7 -7.5 117 98-221 14-132 (198)
140 3un9_A NLR family member X1; l 99.3 9.8E-14 3.4E-18 116.2 -3.2 143 73-220 72-227 (372)
141 1io0_A Tropomodulin; LRR prote 99.0 4.6E-11 1.6E-15 90.3 1.9 121 97-218 31-165 (185)
142 3ogk_B Coronatine-insensitive 99.0 2.3E-11 8E-16 107.1 -2.2 121 101-221 402-530 (592)
143 3rw6_A Nuclear RNA export fact 99.0 3E-11 1E-15 96.3 -1.7 81 127-210 167-257 (267)
144 1io0_A Tropomodulin; LRR prote 98.9 1.7E-10 5.7E-15 87.2 0.8 120 72-193 35-165 (185)
145 3ogk_B Coronatine-insensitive 98.9 7.5E-10 2.6E-14 97.4 3.6 108 75-187 140-251 (592)
146 4fdw_A Leucine rich hypothetic 98.8 2.8E-08 9.5E-13 83.8 10.2 95 126-225 267-366 (401)
147 4fdw_A Leucine rich hypothetic 98.8 4.4E-08 1.5E-12 82.6 11.3 23 95-117 173-195 (401)
148 2p1m_B Transport inhibitor res 98.8 2.2E-10 7.5E-15 100.8 -3.3 118 100-218 395-520 (594)
149 3rw6_A Nuclear RNA export fact 98.7 1.9E-08 6.5E-13 80.1 5.0 82 99-185 167-257 (267)
150 2p1m_B Transport inhibitor res 98.6 2E-08 6.8E-13 88.3 3.3 14 73-86 105-118 (594)
151 2ra8_A Uncharacterized protein 98.5 2.2E-08 7.7E-13 83.3 1.1 136 72-218 171-321 (362)
152 4h09_A Hypothetical leucine ri 98.3 3.5E-06 1.2E-10 70.1 9.9 120 96-225 234-353 (379)
153 3e4g_A ATP synthase subunit S, 98.3 1.7E-07 5.8E-12 69.7 1.7 87 102-193 61-154 (176)
154 2ra8_A Uncharacterized protein 98.3 3.4E-07 1.2E-11 76.1 3.5 138 73-219 139-294 (362)
155 3e4g_A ATP synthase subunit S, 98.2 4E-07 1.4E-11 67.7 2.4 83 74-165 62-150 (176)
156 1pgv_A TMD-1, tropomodulin TMD 98.2 6.9E-07 2.4E-11 67.6 2.3 116 99-216 38-169 (197)
157 1pgv_A TMD-1, tropomodulin TMD 98.1 5.8E-07 2E-11 68.1 1.7 119 72-192 40-170 (197)
158 4gt6_A Cell surface protein; l 98.0 9.6E-05 3.3E-09 61.7 12.0 113 93-215 256-368 (394)
159 4h09_A Hypothetical leucine ri 97.9 0.0001 3.5E-09 61.1 11.5 120 96-225 211-330 (379)
160 4gt6_A Cell surface protein; l 97.8 8.8E-05 3E-09 62.0 9.7 112 93-216 279-390 (394)
161 4fs7_A Uncharacterized protein 97.7 0.00012 4.1E-09 61.1 9.1 88 126-219 293-380 (394)
162 4fs7_A Uncharacterized protein 97.7 0.00028 9.5E-09 58.9 10.3 116 97-225 248-363 (394)
163 3rfe_A Platelet glycoprotein I 97.5 0.00019 6.6E-09 50.5 6.2 56 105-167 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.5 0.00025 8.6E-09 49.9 6.4 55 77-143 12-68 (130)
165 2lz0_A Uncharacterized protein 55.8 31 0.0011 22.2 5.5 43 93-140 11-53 (100)
166 2lz0_A Uncharacterized protein 53.3 23 0.00079 22.9 4.6 38 126-164 16-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.2e-29 Score=208.33 Aligned_cols=185 Identities=23% Similarity=0.396 Sum_probs=153.8
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCce--eeeEEECCCC--CcEEEEEcCCCCcccccccccCcccccCC
Q 027116 26 GCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQ--WERVECNETI--GRVIKLDLAQIRKWESAEWYMNASLFTPF 101 (228)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~--~~gv~c~~~~--~~v~~L~l~~n~l~~~~~~~~~~~~~~~l 101 (228)
.|.++|+.||++||+.+.++..+.+|. .+.+||. |.||.|+... ++|+.|+++++.+. +...+ +..+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~--~~~~~-~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPI-PSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEEC-CGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCcc--CCccc-ChhHhCC
Confidence 699999999999999998776788994 4568898 9999998644 79999999999984 31112 3467889
Q ss_pred CCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116 102 QQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN 180 (228)
Q Consensus 102 ~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 180 (228)
++|++|++++ |.+.+..|.. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPN 150 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTT
T ss_pred CCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCC
Confidence 9999999995 8888877766 88889999999999999888888888899999999999999877777 7888999
Q ss_pred CCEEEcccCCCCCCCChhhhcCCC-CCcEEECCCCcCCcccCC
Q 027116 181 LEELDMSDNAINNPVIPKDYRGLR-KLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 181 L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~N~i~~i~~~ 222 (228)
|++|++++|.+++.+|. .+..++ +|++|++++|+++...+.
T Consensus 151 L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh
Confidence 99999999999876787 787787 888888888888744333
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7.5e-26 Score=206.01 Aligned_cols=186 Identities=25% Similarity=0.271 Sum_probs=137.0
Q ss_pred cCCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCcccccc-cc---------
Q 027116 23 WSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAE-WY--------- 92 (228)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~-~~--------- 92 (228)
++.++.++|++||++||+.+.+|..+++|. .+.+||.|.||+|+ .++|+.|+|+++.+...-. ..
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 345668899999999999998776888994 56789999999998 6899999999998843100 00
Q ss_pred -----------cCcccccCCCCCCEEeCCCCCcccccCc--ccccccCCCCCCcEEECCCCccCccccccc-CCCCCCCE
Q 027116 93 -----------MNASLFTPFQQLESLDLTWNSIAGCVEN--KGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-GGLSSLKH 158 (228)
Q Consensus 93 -----------~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 158 (228)
..+..++.+++|++|++++|.+++.++. . ++.+++|++|++++|.+++..|..+ ..+++|++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 0113567777888888888887766554 3 6777888888888888777666654 67788888
Q ss_pred EeccCccccCccChhh---hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 159 LSLFHNRLNGSVDIKE---LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 159 L~Ls~n~l~~~~p~~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
|++++|.+++..|. . +.++++|++|++++|.+.+..+ +..+++|++|++++|+++...+
T Consensus 156 L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~ 217 (768)
T 3rgz_A 156 LDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP 217 (768)
T ss_dssp EECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCC
T ss_pred EECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCc
Confidence 88888888754443 4 6777888888888888777333 3678888888888888876443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.2e-25 Score=198.06 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=139.4
Q ss_pred CCCcHHHHHHHHHHHhhCCCCC-C--------CCCCCCCCCCCCCcee---eeEEECCCCCcEEEEEcCCCCcccccccc
Q 027116 25 EGCLEQERSALLQIKHFFNGDQ-H--------LQNWVDDENYSDCCQW---ERVECNETIGRVIKLDLAQIRKWESAEWY 92 (228)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~-~--------~~~W~~~~~~~~~c~~---~gv~c~~~~~~v~~L~l~~n~l~~~~~~~ 92 (228)
.+...+|+.||.+++.++.+++ . ..+|. .+.++|.| .||.|+. .++|+.|+|+++++ .|.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~-- 96 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGR-- 96 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEE--
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCc--
Confidence 3445689999999999987765 1 23794 56889999 9999986 48999999999998 444
Q ss_pred cCcccccCCCCCCEEeCCCCCc----------------------------------------------------------
Q 027116 93 MNASLFTPFQQLESLDLTWNSI---------------------------------------------------------- 114 (228)
Q Consensus 93 ~~~~~~~~l~~L~~L~ls~n~l---------------------------------------------------------- 114 (228)
+ +..++.+++|++|++++|.+
T Consensus 97 l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 97 V-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp E-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred C-ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 2 35678889999999988854
Q ss_pred --------------------ccccCcccccccCCCCCCcEEECCCCccCcc-----------------cccccC--CCCC
Q 027116 115 --------------------AGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-----------------IFSSLG--GLSS 155 (228)
Q Consensus 115 --------------------~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~ 155 (228)
++ +|. .++++++|++|+|++|.+++. +|..++ .+++
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccchhhhhhccccCCCcc-CCH----HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 22 222 277788888888888888875 788877 8888
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCC-CCChhhhcCC------CCCcEEECCCCcCCcccC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INN-PVIPKDYRGL------RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~l------~~L~~L~L~~N~i~~i~~ 221 (228)
|++|++++|.+.+.+|. .++++++|++|++++|+ +++ .+|. .+..+ ++|++|++++|+++.+|.
T Consensus 251 L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred CCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 88888888888877886 78888888888888887 776 5666 55554 777777777777776665
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.7e-24 Score=198.41 Aligned_cols=186 Identities=19% Similarity=0.243 Sum_probs=136.2
Q ss_pred CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCC--CCCCC--cee------------eeEEECCCCCcEEEEEcCCCCccc
Q 027116 24 SEGCLEQERSALLQIKHFFNGDQHLQNWVDDE--NYSDC--CQW------------ERVECNETIGRVIKLDLAQIRKWE 87 (228)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~--~~~~~--c~~------------~gv~c~~~~~~v~~L~l~~n~l~~ 87 (228)
.+++..+|+.||++||+++.+| +|..+. ...+| |.| .||.|+. .++|+.|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L-- 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA-- 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC--
T ss_pred ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC--
Confidence 4556788999999999999876 685211 01244 999 9999986 68999999999999
Q ss_pred ccccccCcccccCCCCCCEEeC-CCCCcccccCcc---------------------------------------------
Q 027116 88 SAEWYMNASLFTPFQQLESLDL-TWNSIAGCVENK--------------------------------------------- 121 (228)
Q Consensus 88 ~~~~~~~~~~~~~l~~L~~L~l-s~n~l~~~~~~~--------------------------------------------- 121 (228)
.|. + +..++++++|++|++ ++|.+.+..+..
T Consensus 336 ~G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 336 KGR--V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp EEE--E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCc--C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 444 2 356788889999999 777654431100
Q ss_pred ---------------------------cccccCCCCCCcEEECCCCccCc-----------------ccccccC--CCCC
Q 027116 122 ---------------------------GLDRLSRLNNLKFLHLDFNWFNN-----------------SIFSSLG--GLSS 155 (228)
Q Consensus 122 ---------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~ 155 (228)
++..+.++++|++|+|++|.+++ .+|..++ .+++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 11237778888888888888887 3777776 8888
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCC-CCChhhhcCC-------CCCcEEECCCCcCCcccC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INN-PVIPKDYRGL-------RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~l-------~~L~~L~L~~N~i~~i~~ 221 (228)
|++|++++|.+.+.+|. .++++++|+.|++++|+ +++ .+|. .+..+ ++|++|++++|+++.||.
T Consensus 493 L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 88888888888777886 78888888888888887 776 5665 44333 377777777777776664
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=3.6e-22 Score=156.72 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=133.0
Q ss_pred CCCCCceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc
Q 027116 56 NYSDCCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL 126 (228)
Q Consensus 56 ~~~~~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 126 (228)
.....|.|.++.|.. ....++.|++++|.+.. +.+..|..+++|++|++++|.++..++.. |
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~ 84 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----LEPGVFDSLINLKELYLGSNQLGALPVGV----F 84 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTT----T
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----cCHHHhhCccCCcEEECCCCCCCCcChhh----c
Confidence 367789999999975 24578999999999954 34566889999999999999998877665 7
Q ss_pred CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116 127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206 (228)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 206 (228)
..+++|++|+|++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|++++ ++...+..+++|
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 161 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKS-IPHGAFDRLSSL 161 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence 89999999999999999777777899999999999999998 7887 88999999999999999998 665589999999
Q ss_pred cEEECCCCcCCc
Q 027116 207 NTLHLGGTEIAM 218 (228)
Q Consensus 207 ~~L~L~~N~i~~ 218 (228)
+.|++++|+++.
T Consensus 162 ~~L~l~~N~~~c 173 (229)
T 3e6j_A 162 THAYLFGNPWDC 173 (229)
T ss_dssp CEEECTTSCBCT
T ss_pred CEEEeeCCCccC
Confidence 999999999874
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.1e-24 Score=177.23 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHHhhCC-CCC-CCCCCC-CCCCCCCCceeeeEEECC--------CCCcEEEEEcCCCCccccccccc
Q 027116 25 EGCLEQERSALLQIKHFFN-GDQ-HLQNWV-DDENYSDCCQWERVECNE--------TIGRVIKLDLAQIRKWESAEWYM 93 (228)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~-~~~-~~~~W~-~~~~~~~~c~~~gv~c~~--------~~~~v~~L~l~~n~l~~~~~~~~ 93 (228)
.++..+|+.||++||..+. ++. ....|. ......++|.|.|+.|.. ...+|+.|++++|++....
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp---- 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---- 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCC----
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcC----
Confidence 3456689999999999873 443 556773 113467889999999942 3478999999999985322
Q ss_pred CcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChh
Q 027116 94 NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIK 173 (228)
Q Consensus 94 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 173 (228)
..+..+++|++|++++|.++. .|.. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|.
T Consensus 98 --~~l~~l~~L~~L~L~~n~l~~-lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~- 168 (328)
T 4fcg_A 98 --DQAFRLSHLQHMTIDAAGLME-LPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE- 168 (328)
T ss_dssp --SCGGGGTTCSEEEEESSCCCC-CCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred --hhhhhCCCCCEEECCCCCccc-hhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence 234557777777777777763 3333 566666666666666666 4555566666666666666555444443
Q ss_pred hhc---------CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 174 ELD---------SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 174 ~~~---------~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.+. .+++|++|++++|.++. +|. .+..+++|++|++++|+++.++
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA-SIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCG-GGGGCTTCCEEEEESSCCCCCC
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCc-chH-hhcCCCCCCEEEccCCCCCcCc
Confidence 222 24455555555555543 444 4444445555555555444443
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.7e-22 Score=156.46 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=115.6
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..
T Consensus 35 ~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCCCcCc-----cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcc
Confidence 467888888888854 33456788899999999999998877765 788899999999999998777777888
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
+++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...|..+++|++|++++|+++.++...+
T Consensus 106 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 899999999999998 5666467888999999999999988 555478888899999999999988887554
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.9e-21 Score=156.11 Aligned_cols=139 Identities=24% Similarity=0.280 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccC----------
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN---------- 143 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---------- 143 (228)
.++.|++++|.+.. +.+..|..+++|++|++++|.++...+.. |..+++|++|++++|.++
T Consensus 38 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TCSEEECCSSCCSC-----CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECcCCCCCe-----eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 46677777776643 22334556666666666666665544432 344455555555555444
Q ss_pred --------------cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116 144 --------------NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 144 --------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L 209 (228)
+..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+++ ++...|..+++|++|
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTL 186 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEE
Confidence 443344444555555555555554 3333234555555555555555555 333245555556666
Q ss_pred ECCCCcCCcccCCc
Q 027116 210 HLGGTEIAMIDGSK 223 (228)
Q Consensus 210 ~L~~N~i~~i~~~~ 223 (228)
++++|+++.++...
T Consensus 187 ~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 187 KLDNNQLKRVPEGA 200 (270)
T ss_dssp ECCSSCCSCCCTTT
T ss_pred ECCCCcCCcCCHHH
Confidence 66666655555443
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.5e-21 Score=148.03 Aligned_cols=148 Identities=23% Similarity=0.313 Sum_probs=127.7
Q ss_pred CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116 60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN 130 (228)
Q Consensus 60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 130 (228)
.|.|.++.|.. ...+++.|++++|.+.. +.+..|..+++|++|++++|++++.++.. +..++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~ 76 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLT 76 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChhh----cCCCC
Confidence 37899999965 23468999999999854 34556889999999999999999877665 78899
Q ss_pred CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 027116 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210 (228)
Q Consensus 131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 210 (228)
+|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...+..+++|++|+
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEE
Confidence 9999999999999777777899999999999999998 5666468999999999999999998 6664789999999999
Q ss_pred CCCCcCCc
Q 027116 211 LGGTEIAM 218 (228)
Q Consensus 211 L~~N~i~~ 218 (228)
+++|++..
T Consensus 155 l~~N~~~~ 162 (208)
T 2o6s_A 155 LHDNPWDC 162 (208)
T ss_dssp CCSCCBCC
T ss_pred ecCCCeec
Confidence 99998764
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=3.8e-21 Score=150.04 Aligned_cols=147 Identities=25% Similarity=0.371 Sum_probs=126.8
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.|..+.|.+ ....++.|++++|++.. +.+..|..+++|++|++++|.+++..+.. |.++++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~ 81 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRS 81 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcC
Confidence 7888888864 23478999999999854 44567889999999999999999887766 899999
Q ss_pred CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211 (228)
Q Consensus 132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 211 (228)
|++|+|++|.++...+..|..+++|++|+|++|.+++ ++...+..+++|+.|+|++|.+++ ++...|..+++|++|++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEe
Confidence 9999999999997666678999999999999999985 544489999999999999999999 55547999999999999
Q ss_pred CCCcCCc
Q 027116 212 GGTEIAM 218 (228)
Q Consensus 212 ~~N~i~~ 218 (228)
++|++..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 9998753
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=149.27 Aligned_cols=148 Identities=23% Similarity=0.281 Sum_probs=126.9
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.|..+.|.+ ....++.|++++|.+.... +...|..+++|++|++++|.+++..+.. |..+++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~ 82 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG 82 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence 6788888854 1345789999999985432 2345789999999999999999987765 899999
Q ss_pred CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211 (228)
Q Consensus 132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 211 (228)
|++|+|++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|+.|++++|.+++..|. .|..+++|++|++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 160 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL 160 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEe
Confidence 99999999999988888899999999999999999954444 899999999999999999995465 8999999999999
Q ss_pred CCCcCCc
Q 027116 212 GGTEIAM 218 (228)
Q Consensus 212 ~~N~i~~ 218 (228)
++|+++.
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 9999863
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.3e-20 Score=164.33 Aligned_cols=142 Identities=25% Similarity=0.294 Sum_probs=126.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
+..++.|||++|.|+. +++..|..+++|++|++++|+|++.++.. |.++++|++|+|++|++++..+..|.
T Consensus 51 p~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 3578999999999965 45677999999999999999999988776 89999999999999999977777899
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCC-CChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-VIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
++++|++|++++|+++ .++...++.+++|++|++++|.+++. .|. .+..+++|++|++++|+|+.++...+
T Consensus 122 ~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccc
Confidence 9999999999999998 57765799999999999999999873 455 88899999999999999998876654
No 13
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4.2e-20 Score=154.26 Aligned_cols=151 Identities=22% Similarity=0.282 Sum_probs=127.9
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCccccc-CCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFT-PFQQLESLDLTWNSIAGCVENKGLDRLSRLN 130 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 130 (228)
|.+..+.|.. ....++.|+|++|.+.. +....+. .+++|++|++++|++++..+.. |..++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~ 88 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP 88 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence 6777788854 23457899999999865 3345566 8999999999999999988766 89999
Q ss_pred CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhh---cCCCCCc
Q 027116 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY---RGLRKLN 207 (228)
Q Consensus 131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~ 207 (228)
+|++|+|++|+++...+..|..+++|++|+|++|.++ .++...+..+++|+.|+|++|.+++ +|...| ..+++|+
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM 166 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence 9999999999999777778999999999999999998 4554489999999999999999998 787455 5789999
Q ss_pred EEECCCCcCCcccCC
Q 027116 208 TLHLGGTEIAMIDGS 222 (228)
Q Consensus 208 ~L~L~~N~i~~i~~~ 222 (228)
+|+|++|+|+.++..
T Consensus 167 ~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 167 LLDLSSNKLKKLPLT 181 (361)
T ss_dssp EEECCSSCCCCCCHH
T ss_pred EEECCCCCCCccCHH
Confidence 999999999998854
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-19 Score=145.22 Aligned_cols=136 Identities=23% Similarity=0.339 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+.. ++...|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..
T Consensus 85 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 85 KNLETLWVTDNKLQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp TTCCEEECCSSCCCC-----CCTTTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCcCCc-----CCHhHcccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccC
Confidence 345566666665532 33345677788888888888887776655 788999999999999999777667899
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
+++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|++..-
T Consensus 156 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999998 5666578999999999999999998 6665789999999999999998653
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=2e-19 Score=142.73 Aligned_cols=137 Identities=26% Similarity=0.331 Sum_probs=121.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++.++.. +..+++|++|++++|.+++..+..+.
T Consensus 58 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQT-----LSAGVFDDLTELGTLGLANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp CTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCEEECCCCcCCc-----cCHhHhccCCcCCEEECCCCcccccChhH----hcccCCCCEEEcCCCcCCCcChhHhc
Confidence 4689999999999854 34566889999999999999999877765 88999999999999999977777789
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
.+++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++..
T Consensus 129 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999999998 5666579999999999999999998 5554899999999999999998754
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=2.8e-19 Score=143.61 Aligned_cols=138 Identities=27% Similarity=0.282 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+... ..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..
T Consensus 63 ~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp TTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 4566777777766431 23556666677777776666655544 566666666666666666555555666
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
+++|++|++++|.++ .++...+..+++|+.|++++|++++ ++...+..+++|++|++++|+++.++...
T Consensus 132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 666666666666666 3444345666666666666666666 33325566666666666666666665543
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.8e-19 Score=142.90 Aligned_cols=142 Identities=24% Similarity=0.278 Sum_probs=112.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|++++|++... .+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.
T Consensus 27 ~~~l~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CTTCCEEECTTCCCCEE-----CTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCccEEECCCCccccc-----CHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhc
Confidence 34688999999988543 3346788889999999999888776655 78888999999999998877777888
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCC-CChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-VIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
.+++|++|++++|.+++ ++...+..+++|++|++++|.+++. +|. .+..+++|++|++++|+++.++...+
T Consensus 98 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 98 GLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHh
Confidence 88889999999888874 5544678888888999988888762 466 78888888888888888888765433
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.1e-19 Score=153.84 Aligned_cols=157 Identities=24% Similarity=0.317 Sum_probs=129.5
Q ss_pred CCceeee--EEECCC--------CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc-CcccccccC
Q 027116 59 DCCQWER--VECNET--------IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV-ENKGLDRLS 127 (228)
Q Consensus 59 ~~c~~~g--v~c~~~--------~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~ 127 (228)
..|.|.+ +.|... ..+++.|++++|.+.. +.+..|..+++|++|++++|.+.+.. +.. |.
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~----~~ 76 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-----LNETSFSRLQDLQFLKVEQQTPGLVIRNNT----FR 76 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-----ECTTTTSSCTTCCEEECCCCSTTCEECTTT----TT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-----CChhHhccCccccEEECcCCcccceECccc----cc
Confidence 4566555 777642 2579999999999854 34567899999999999999997554 333 88
Q ss_pred CCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116 128 RLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206 (228)
Q Consensus 128 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 206 (228)
++++|++|++++|.+++..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|...+.++++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999999999988899999999999999999999865443 1388999999999999999996566348899999
Q ss_pred cEEECCCCcCCcccCCcc
Q 027116 207 NTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 207 ~~L~L~~N~i~~i~~~~~ 224 (228)
++|++++|+++.+....+
T Consensus 157 ~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CEEECTTCCBSCCCTTTS
T ss_pred cEEeCCCCcccccChhhh
Confidence 999999999998876654
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.7e-19 Score=144.43 Aligned_cols=138 Identities=24% Similarity=0.242 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc-cCcccccccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLG 151 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~ 151 (228)
..++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|. ++...|..+.
T Consensus 32 ~~l~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCcCCc-----cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhc
Confidence 456666666666643 22334555555666666665555544433 4555555555555554 4444344455
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|++|++++|.+++ ++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++.
T Consensus 103 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCH
Confidence 55555555555555542 222244455555555555555554 332234445555555555555554444
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=5.4e-19 Score=137.77 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=118.5
Q ss_pred EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116 76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
+.+++++++++..+. .. .+++++|++++|.+++..+.. |..+++|++|+|++|.+++..|..|..+++
T Consensus 14 ~~v~c~~~~l~~iP~-----~l---~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-----NL---PETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTTSCCSSCCS-----SC---CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred CEEEcCCCCcCcCCC-----cc---CcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence 368999998865332 21 268999999999999887765 899999999999999999888999999999
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
|++|+|++|.++ .+|...+..+++|+.|+|++|.+++..+. .|..+++|++|+|++|+|+.++...|.
T Consensus 82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 999999999998 68876789999999999999999994455 899999999999999999999987553
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=4.6e-19 Score=143.80 Aligned_cols=120 Identities=25% Similarity=0.307 Sum_probs=89.7
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..+++|++|++++|.++..+. . +..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+..+
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~-~----~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 147 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPL-L----GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCC-C----TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred CCCCcCCEEECCCCcCCcCch-h----hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence 455666666666666654332 2 667888888888888888766677888888888888888887 5665567788
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
++|+.|++++|++++ +|...|..+++|++|++++|+|+.+|...+.
T Consensus 148 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 148 PKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp TTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 888888888888887 6664677888888888888888888776543
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4.3e-19 Score=157.18 Aligned_cols=142 Identities=23% Similarity=0.253 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|.+++..|..++
T Consensus 31 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcC
Confidence 4679999999999854 44567899999999999999999987766 89999999999999999988899999
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC-CCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
.+++|++|++++|.++ .++...++.+++|++|++++|.+++ .+|. .+.++++|++|++++|+++.++...+
T Consensus 102 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 102 GLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred CcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhh
Confidence 9999999999999998 4554479999999999999999986 4677 89999999999999999999877654
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=152.36 Aligned_cols=147 Identities=23% Similarity=0.261 Sum_probs=89.3
Q ss_pred eeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCc
Q 027116 63 WERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK 133 (228)
Q Consensus 63 ~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~ 133 (228)
+..+.|.. ....++.|++++|++.. +.+..|..+++|++|++++|.+++..+.. |.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence 45667753 23467888888888754 33455777777888888888777765554 67777777
Q ss_pred EEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCC
Q 027116 134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213 (228)
Q Consensus 134 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 213 (228)
+|+|++|+++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|+..+.++...|.++++|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 7777777777555556777777777777777776 444434555555555555553222223333344444444444444
Q ss_pred CcCCcc
Q 027116 214 TEIAMI 219 (228)
Q Consensus 214 N~i~~i 219 (228)
|+++.+
T Consensus 195 n~l~~~ 200 (440)
T 3zyj_A 195 CNLREI 200 (440)
T ss_dssp SCCSSC
T ss_pred CcCccc
Confidence 444443
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=9.1e-20 Score=151.57 Aligned_cols=155 Identities=26% Similarity=0.365 Sum_probs=121.7
Q ss_pred CCCceeeeEEECC-----------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc
Q 027116 58 SDCCQWERVECNE-----------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL 126 (228)
Q Consensus 58 ~~~c~~~gv~c~~-----------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 126 (228)
...|.|.++ |+. ....++.|++++|.+.. +....+..+++|++|++++|.+++..+.. +
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~ 96 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEEDS----F 96 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----T
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHhh----c
Confidence 456777766 432 23478999999999854 34456888999999999999999877765 8
Q ss_pred CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCC-CCCCCChhhhcCCC
Q 027116 127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNA-INNPVIPKDYRGLR 204 (228)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~ 204 (228)
..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ..+..+++|++|++++|. +.+ ++...+.+++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~ 174 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLT 174 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCC
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCC
Confidence 88999999999999998666556888999999999999998 5664 467888999999999884 665 5443788888
Q ss_pred CCcEEECCCCcCCcccCCcc
Q 027116 205 KLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 205 ~L~~L~L~~N~i~~i~~~~~ 224 (228)
+|++|++++|+++.+....+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp EEEEEEEEETTCCEECTTTT
T ss_pred CCCEEECCCCCcCccCHHHH
Confidence 88888888888887755543
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.2e-19 Score=151.76 Aligned_cols=148 Identities=24% Similarity=0.300 Sum_probs=104.7
Q ss_pred eeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCc
Q 027116 63 WERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK 133 (228)
Q Consensus 63 ~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~ 133 (228)
|..+.|.. ....++.|++++|++.. +.+..|..+++|++|++++|.+++..+.. |.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence 46677754 23578999999999854 34566888999999999999998877665 88888999
Q ss_pred EEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCC
Q 027116 134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213 (228)
Q Consensus 134 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 213 (228)
+|+|++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|...+.++...|.++++|++|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 9999999888766667888888888888888887 565545666666666666653322224443455555555555555
Q ss_pred CcCCccc
Q 027116 214 TEIAMID 220 (228)
Q Consensus 214 N~i~~i~ 220 (228)
|+++.++
T Consensus 206 n~l~~~~ 212 (452)
T 3zyi_A 206 CNIKDMP 212 (452)
T ss_dssp SCCSSCC
T ss_pred Ccccccc
Confidence 5555443
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7.2e-19 Score=142.65 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=122.6
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|++++|.+.. +.+..|..+++|++|++++|.+++..+ ...+++|++|++++|.++ .+|..+.
T Consensus 30 ~~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~ 97 (290)
T 1p9a_G 30 PKDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQ 97 (290)
T ss_dssp CTTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTT
T ss_pred CCCCCEEEcCCCcCCc-----cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhc
Confidence 3578999999999854 334568899999999999999998655 467999999999999998 6778889
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
.+++|++|++++|+++ .+|...+..+++|+.|++++|++++ +|...|..+++|+.|++++|+|+.++...|.
T Consensus 98 ~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred cCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 9999999999999998 5665589999999999999999998 6665789999999999999999999987653
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.1e-18 Score=140.88 Aligned_cols=119 Identities=24% Similarity=0.297 Sum_probs=64.4
Q ss_pred cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116 97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD 176 (228)
Q Consensus 97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 176 (228)
.+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~ 174 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR 174 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhH----hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhc
Confidence 3444455555555555554443333 455555555555555555444444555555555565555555 34433455
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|+.|++++|.+++..|. .+..+++|++|++++|+++.++.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCH
T ss_pred CccccCEEECCCCcccccCHh-HccCcccccEeeCCCCcCCcCCH
Confidence 556666666666666553344 55566666666666666665543
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.1e-18 Score=135.25 Aligned_cols=142 Identities=23% Similarity=0.191 Sum_probs=120.7
Q ss_pred eeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCcc
Q 027116 63 WERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWF 142 (228)
Q Consensus 63 ~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 142 (228)
+..-.|. .+.++.+++++..... . -.++|++|++++|.+++..+.. +..+++|++|+|++|.+
T Consensus 14 ~~~~~Cs-----~~~v~c~~~~l~~ip~-----~---~~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 14 PSQCSCS-----GTTVDCRSKRHASVPA-----G---IPTNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQL 76 (229)
T ss_dssp CTTCEEE-----TTEEECTTSCCSSCCS-----C---CCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCC
T ss_pred CCCCEEe-----CCEeEccCCCcCccCC-----C---CCCCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCCC
Confidence 4455674 2468999998854332 2 2388999999999999987766 89999999999999999
Q ss_pred CcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 143 NNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 143 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
+...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|+++. +|. .+..+++|++|++++|+|+.++..
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCccCHH
Confidence 8766677899999999999999998 5776578999999999999999996 888 889999999999999999999876
Q ss_pred cc
Q 027116 223 KV 224 (228)
Q Consensus 223 ~~ 224 (228)
.|
T Consensus 154 ~~ 155 (229)
T 3e6j_A 154 AF 155 (229)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=134.55 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=115.6
Q ss_pred EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116 77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156 (228)
Q Consensus 77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 156 (228)
.+++++|.++.++ .. + ...+++|++++|.+++..+... |..+++|++|++++|.+++..+..|..+++|
T Consensus 15 ~l~~s~n~l~~iP-----~~-~--~~~~~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 15 TVDCSNQKLNKIP-----EH-I--PQYTAELRLNNNEFTVLEATGI---FKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp EEECCSSCCSSCC-----SC-C--CTTCSEEECCSSCCCEECCCCC---GGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EeEeCCCCcccCc-----cC-C--CCCCCEEEcCCCcCCccCchhh---hccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 7999999986532 22 1 3457899999999998855322 7889999999999999998877789999999
Q ss_pred CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
++|++++|.++ .++...+..+++|++|++++|++++..|. .|..+++|++|+|++|+|+.+++..|.
T Consensus 84 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 84 NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred CEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhc
Confidence 99999999998 56665799999999999999999995455 899999999999999999999776553
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.5e-18 Score=139.34 Aligned_cols=137 Identities=21% Similarity=0.285 Sum_probs=120.0
Q ss_pred CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116 71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150 (228)
Q Consensus 71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 150 (228)
...+++.|++++|.+.. +.+..+..+++|++|++++|.+++.++.. +..+++|++|++++|.+++..+..+
T Consensus 83 ~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQS-----LPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp TCTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCEEECCCCccCc-----cChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHh
Confidence 35689999999999854 44556889999999999999999887765 7899999999999999998777778
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
..+++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...+..+++|++|++++|++..
T Consensus 154 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc
Confidence 99999999999999998 4665478999999999999999999 555478999999999999999864
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=4.2e-19 Score=155.41 Aligned_cols=154 Identities=23% Similarity=0.284 Sum_probs=128.0
Q ss_pred CceeeeEEECC-----------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCC
Q 027116 60 CCQWERVECNE-----------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR 128 (228)
Q Consensus 60 ~c~~~gv~c~~-----------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 128 (228)
.|.|.++ |+. ....++.|++++|.+.. +.+..|..+++|++|++++|++++..+.. |..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGDA----FYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence 4777777 642 23479999999999854 33456899999999999999999988766 899
Q ss_pred CCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207 (228)
Q Consensus 129 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 207 (228)
+++|++|++++|.+++..|..++.+++|++|++++|.+++ .+|. .++.+++|++|++++|.+.+.++...+.++++|+
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 9999999999999998888789999999999999999984 2444 7899999999999999855547755889999999
Q ss_pred EEECCCCcCCcccCCcc
Q 027116 208 TLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 208 ~L~L~~N~i~~i~~~~~ 224 (228)
+|++++|+++.+.+..+
T Consensus 152 ~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSL 168 (549)
T ss_dssp EEEEEETTCCEECTTTT
T ss_pred eeeccCCcccccChhhh
Confidence 99999999987655443
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=6.7e-19 Score=148.18 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=118.1
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.++++++.+.. ++...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..
T Consensus 45 ~~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 567788888887754 44556788999999999999998877755 889999999999999999888888999
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
+++|++|++++|.++ .+|...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++..
T Consensus 116 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 183 (390)
T 3o6n_A 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLS 183 (390)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGG
T ss_pred CCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccc
Confidence 999999999999998 6887567899999999999999998 4443789999999999999999887543
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.6e-19 Score=140.97 Aligned_cols=140 Identities=15% Similarity=0.243 Sum_probs=113.1
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCC-cccccCcccccccCCCCCCcEEECCC-CccCcccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNS-IAGCVENKGLDRLSRLNNLKFLHLDF-NWFNNSIFSS 149 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~ 149 (228)
...++.|++++|++.. +++..|..+++|++|++++|. ++...+.. |.++++|++|++++ |.++...+..
T Consensus 30 ~~~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCcccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4578999999999854 344568889999999999997 88776655 78899999999998 8998766677
Q ss_pred cCCCCCCCEEeccCccccCccChhhhcCCCCCC---EEEcccC-CCCCCCChhhhcCCCCCc-EEECCCCcCCcccCCcc
Q 027116 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE---ELDMSDN-AINNPVIPKDYRGLRKLN-TLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~~l~~L~-~L~L~~N~i~~i~~~~~ 224 (228)
|..+++|++|++++|.++ .+| .+..+++|+ .|++++| .+++ ++...|.++++|+ +|++++|+++.++...|
T Consensus 101 f~~l~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLK-MFP--DLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp EECCTTCCEEEEEEECCC-SCC--CCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred hCCCCCCCEEeCCCCCCc-ccc--ccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 888999999999999887 477 377777787 8888888 8877 5554688888888 88888888888877655
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=3.9e-19 Score=132.63 Aligned_cols=140 Identities=24% Similarity=0.256 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +. + +..+..+++|++|++++|.+++. . . +..+++|++|++++|.+++.+|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~-~~--i-~~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-GK--I-EGLTAEFVNLEFLSLINVGLISV-S-N----LPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBT-TB--C-SSCCGGGGGCCEEEEESSCCCCC-S-S----CCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred cccCCEEECCCCCCCh-hh--H-HHHHHhCCCCCEEeCcCCCCCCh-h-h----hccCCCCCEEECcCCcCchHHHHHHh
Confidence 4679999999999851 22 2 33478899999999999999886 3 2 89999999999999999987888787
Q ss_pred CCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
.+++|++|++++|.+++ ++. ..+..+++|+.|++++|.+++ ++. ..+..+++|++|++++|.+.++|...
T Consensus 93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 89999999999999984 542 388999999999999999998 554 47899999999999999999988653
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=2.5e-18 Score=131.23 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=95.0
Q ss_pred EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116 77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156 (228)
Q Consensus 77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 156 (228)
.+++++++++... ... ..++++|++++|.+++..+... +..+++|++|+|++|.+++..|..+..+++|
T Consensus 12 ~l~~s~~~l~~ip-----~~~---~~~l~~L~l~~n~i~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 12 TVDCTGRGLKEIP-----RDI---PLHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp EEECTTSCCSSCC-----SCC---CTTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred EEEcCCCCcCcCc-----cCC---CCCCCEEECCCCcCCccCCccc---cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 4666677664322 211 2278888888888877665321 6678888888888888887777888888888
Q ss_pred CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
++|++++|++++ ++...+..+++|++|++++|++++..|. .+..+++|++|++++|+++.
T Consensus 81 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 81 QELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred CEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence 888888888874 4443677888888888888888885555 78888888888888888763
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.4e-18 Score=154.03 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=118.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.++++++.+.. +++..+..+++|++|++++|.+++.++.. |..+++|++|+|++|.+++..|..|+.
T Consensus 51 ~~l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 346778888887643 45566788999999999999999887765 899999999999999999888888899
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
+++|++|++++|.++ .+|...+..+++|++|++++|.+++..|. .|..+++|++|++++|.++.++..
T Consensus 122 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGG
T ss_pred CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChh
Confidence 999999999999998 67775678999999999999999984444 899999999999999999887643
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=1.2e-18 Score=158.61 Aligned_cols=91 Identities=24% Similarity=0.412 Sum_probs=78.6
Q ss_pred cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK 205 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~ 205 (228)
+..+++|+.|++++|++++.+|..++.+++|++|+|++|.++|.+|. .++.+++|+.|||++|++++.+|. .+..+++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~ 705 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQ-AMSALTM 705 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCG-GGGGCCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCCh-HHhCCCC
Confidence 34467788889999998888888888899999999999999888887 888899999999999999988888 8888899
Q ss_pred CcEEECCCCcCCc
Q 027116 206 LNTLHLGGTEIAM 218 (228)
Q Consensus 206 L~~L~L~~N~i~~ 218 (228)
|++|++++|+++.
T Consensus 706 L~~L~ls~N~l~g 718 (768)
T 3rgz_A 706 LTEIDLSNNNLSG 718 (768)
T ss_dssp CSEEECCSSEEEE
T ss_pred CCEEECcCCcccc
Confidence 9999999998864
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-17 Score=128.98 Aligned_cols=135 Identities=21% Similarity=0.214 Sum_probs=114.7
Q ss_pred EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116 76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
+.++.+++++..... .-.++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..+++
T Consensus 10 ~~v~c~~~~l~~~p~--------~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT--------GIPAQTTYLDLETNSLKSLPNGV----FDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp TEEECCSSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCccCCCC--------CCCCCCcEEEcCCCccCcCChhh----hcccccCcEEECCCCccCccChhhcCCCCC
Confidence 467888887754221 22468999999999999877665 789999999999999999776667899999
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++...+
T Consensus 78 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 999999999998 5666568999999999999999998 665478999999999999999999887654
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.7e-18 Score=139.02 Aligned_cols=140 Identities=22% Similarity=0.266 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-ccccccCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGG 152 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~ 152 (228)
.++.|++++|.+...+. ...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++ ..|..+..
T Consensus 102 ~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp TCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTT----TTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCccchhh----cccCcCCCEEECCCCccccccchhHHhh
Confidence 44455555554432111 134566677777777777776655554 6677777777777777765 46667777
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
+++|++|++++|.+++..|. .+..+++|+.|++++|.+++ ++...+..+++|++|++++|+++.++...
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred CcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 77777788877777743333 67777778888888887777 44336777777888888888777665543
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=148.86 Aligned_cols=136 Identities=27% Similarity=0.345 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+... .+..|..+++|++|++++|.+++..+.. |.++++|++|+|++|.++...+..|..
T Consensus 32 ~~l~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-----NQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCcEEECCCCccceE-----CHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEEECCCCcCCccCcccccC
Confidence 4677778887777542 2344566666666666666666655544 555666666666666655444444555
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+. .|..+++|++|++++|+++.+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC
T ss_pred CCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc
Confidence 55555555555555532222 444455555555555544442222 444444444444444444433
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=5.7e-18 Score=144.96 Aligned_cols=137 Identities=25% Similarity=0.284 Sum_probs=114.2
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+.. +.+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..
T Consensus 275 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFA-----LLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp SCCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred cCceEEEecCccccc-----cchhhcccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcC
Confidence 467788888887743 33456788999999999999998877765 888999999999999998887888999
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+++|++|++++|.+++..|. .+..+++|++|++++|++++ +|...+..+++|++|++++|+++.-.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccCCEEECCCCcccccChh-hccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCC
Confidence 99999999999999854454 88899999999999999998 66647788999999999999987643
No 42
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-17 Score=124.87 Aligned_cols=112 Identities=22% Similarity=0.253 Sum_probs=93.5
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN 180 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 180 (228)
.++|++|++++|++++.++.. +..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcc
Confidence 368899999999998776654 788899999999999998766667788999999999999998 466546788899
Q ss_pred CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
|+.|++++|.+++ +|...+..+++|++|++++|+++.
T Consensus 102 L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 102 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence 9999999999987 666467888999999999998865
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.7e-18 Score=131.40 Aligned_cols=110 Identities=20% Similarity=0.314 Sum_probs=58.1
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcc-ccCccChhhhc
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNR-LNGSVDIKELD 176 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~ 176 (228)
+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~ 156 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLK 156 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGG
T ss_pred hhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhc
Confidence 445555555555555555433333 5555555555555555555455555555555555555555 43 343 455
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
.+++|+.|++++|.+++ ++ .+..+++|++|++++|+|.
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC---
T ss_pred CCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCcccC
Confidence 55555555555555555 32 3445555555555555554
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=148.77 Aligned_cols=141 Identities=25% Similarity=0.299 Sum_probs=117.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|.+++..|..|.
T Consensus 27 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp CSSCCEEECCSCCCCE-----ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccccEEEccCCccCc-----cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhc
Confidence 4578899999999854 33456888999999999999998877765 88899999999999999877778899
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC-CCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
.+++|++|++++|.++ .++...++.+++|++|++++|.+++ .+|. .+.++++|++|++++|+++.++...
T Consensus 98 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 98 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp TCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGGG
T ss_pred Cccccccccccccccc-cCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHHH
Confidence 9999999999999998 5665468889999999999999887 3577 8888999999999999988876543
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=4.7e-18 Score=136.53 Aligned_cols=112 Identities=26% Similarity=0.307 Sum_probs=84.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.
T Consensus 51 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~ 121 (276)
T 2z62_A 51 FPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIG 121 (276)
T ss_dssp CTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred ccCCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcc
Confidence 4578888888888753 33456778888888888888888776655 77788888888888888766665677
Q ss_pred CCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCC
Q 027116 152 GLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
.+++|++|++++|.+++ .+|. .+..+++|+.|++++|++++
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred cCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCc
Confidence 88888888888888864 2455 77778888888888888776
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-18 Score=130.88 Aligned_cols=131 Identities=19% Similarity=0.261 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.+++.|++++|.+... + .+..+++|++|++++|.++.... +..+++|++|++++|.+++..+..+..
T Consensus 44 ~~L~~L~l~~n~i~~l-----~--~l~~l~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDL-----T--GIEYAHNIKDLTINNIHATNYNP------ISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSCC-----T--TGGGCTTCSEEEEESCCCSCCGG------GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred CCccEEeccCCCccCh-----H--HHhcCCCCCEEEccCCCCCcchh------hhcCCCCCEEEeECCccCcccChhhcC
Confidence 4688999999998532 2 37889999999999998766432 889999999999999999888889999
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+++|++|++++|.+++..+. .+..+++|++|++++|. +++ ++ .+..+++|++|++++|+|+.++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCcChH
Confidence 99999999999999865665 89999999999999998 776 54 6889999999999999999876
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=127.92 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=101.5
Q ss_pred EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116 77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156 (228)
Q Consensus 77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 156 (228)
.++++++++...+ ... .++|++|++++|.++..+ .. +..+++|++|+|++|.+++..+..|..+++|
T Consensus 14 ~l~~~~~~l~~ip-----~~~---~~~l~~L~L~~n~i~~ip-~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 14 VVRCSNKGLKVLP-----KGI---PRDVTELYLDGNQFTLVP-KE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp EEECTTSCCSSCC-----SCC---CTTCCEEECCSSCCCSCC-GG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEcCCCCCCcCC-----CCC---CCCCCEEECCCCcCchhH-HH----hhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 4677777775432 221 257899999999998644 33 8889999999999999998777789999999
Q ss_pred CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
++|+|++|.++ .++...+..+++|+.|+|++|.++. ++...|..+++|++|++++|++.
T Consensus 81 ~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 81 LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 99999999998 4665578899999999999999997 66657888999999999999875
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=4.5e-19 Score=145.29 Aligned_cols=133 Identities=19% Similarity=0.293 Sum_probs=75.0
Q ss_pred CcEEEEEcCC-CCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 73 GRVIKLDLAQ-IRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 73 ~~v~~L~l~~-n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..++.|++++ |.+.. . .+..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.+|..+.
T Consensus 76 ~~L~~L~L~~~n~l~~--~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVG--P---IPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp TTCSEEEEEEETTEES--C---CCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CCCCeeeCCCCCcccc--c---CChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4677788874 66632 1 1334566666666666666666555544 55566666666666666655565666
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCC-CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLS-NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
.+++|++|++++|.+++.+|. .+..++ +|+.|++++|.+++.+|. .+..++ |++|++++|+++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEE
T ss_pred cCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCccc
Confidence 666666666666666555555 555554 555555555555543443 343333 444444444443
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.4e-17 Score=147.48 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=105.4
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL 181 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 181 (228)
+++++|+|++|+|++.++.. |.++++|++|+|++|+|++..+..|.++++|++|+|++|+++ .+|...|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence 47999999999999988766 999999999999999999877788999999999999999998 6887689999999
Q ss_pred CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
++|++++|++++ ++...|+++++|++|++++|+++.++...
T Consensus 127 ~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 127 QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp CEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCch
Confidence 999999999998 66657999999999999999998876543
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=4.9e-17 Score=133.80 Aligned_cols=149 Identities=20% Similarity=0.322 Sum_probs=115.7
Q ss_pred CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116 60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN 130 (228)
Q Consensus 60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 130 (228)
.|.|..+.|.. ....++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence 47888888864 23578999999999854 33456889999999999999999887765 88999
Q ss_pred CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC--CCChhhhcCCCCCcE
Q 027116 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN--PVIPKDYRGLRKLNT 208 (228)
Q Consensus 131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~ 208 (228)
+|++|++++|.++ .+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.. ..+. .+..+++|++
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~ 175 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSY 175 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCE
T ss_pred CCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCE
Confidence 9999999999998 4555443 68888888888887 5665578888888888888888763 3344 6777777777
Q ss_pred EECCCCcCCcccCC
Q 027116 209 LHLGGTEIAMIDGS 222 (228)
Q Consensus 209 L~L~~N~i~~i~~~ 222 (228)
|++++|+++.++..
T Consensus 176 L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 176 IRIADTNITTIPQG 189 (330)
T ss_dssp EECCSSCCCSCCSS
T ss_pred EECCCCccccCCcc
Confidence 77777777776653
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=3.7e-19 Score=160.99 Aligned_cols=183 Identities=21% Similarity=0.166 Sum_probs=115.3
Q ss_pred CcHHHHHHHHHHHhhCCCCC--CCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCccccc---------------
Q 027116 27 CLEQERSALLQIKHFFNGDQ--HLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESA--------------- 89 (228)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~--~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~--------------- 89 (228)
....+++++.+++..+.+.. .-..|. ......+.|.++.+.. .+++.|++.++.+....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCccccc
Confidence 34557788888887764332 334564 3445556787766643 45555555555443211
Q ss_pred -------ccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEecc
Q 027116 90 -------EWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162 (228)
Q Consensus 90 -------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 162 (228)
...+.+..+..++.|+.|+|++|.+...++. +..+++|++|+|++|.++ .+|..+..+++|++|+|+
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 0113355678899999999999999865444 568999999999999999 788899999999999999
Q ss_pred CccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 163 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
+|.++ .+|. .++.+++|++|+|++|.|+. +|. .|..+++|++|+|++|+|+..++..
T Consensus 279 ~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 279 HNRLT-SLPA-ELGSCFQLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TSCCS-SCCS-SGGGGTTCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCcCC-ccCh-hhcCCCCCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccCCCChHH
Confidence 99998 7888 89999999999999999986 898 7999999999999999999765443
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=9.5e-18 Score=148.51 Aligned_cols=139 Identities=22% Similarity=0.208 Sum_probs=104.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|.+++..|..+.
T Consensus 32 ~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CTTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhc
Confidence 4578999999999854 34566788888999999998888877765 78888888888888888877777888
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++.
T Consensus 103 ~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 103 GPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp SCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred ccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccCh
Confidence 8888888888888887 3433367777888888888888776 321134447777777777777776544
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=155.42 Aligned_cols=153 Identities=22% Similarity=0.268 Sum_probs=124.8
Q ss_pred ceeeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc-CcccccccCCCCCCcEEECCC
Q 027116 61 CQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV-ENKGLDRLSRLNNLKFLHLDF 139 (228)
Q Consensus 61 c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~~l~~L~~L~Ls~ 139 (228)
|.|..|.+ ...+++.||+++|.+.. +.+..|..+++|++|++++|...+.+ +.. |.++++|++|+|++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGS 82 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCC
Confidence 45666665 46789999999999854 34567899999999999999655444 444 88999999999999
Q ss_pred CccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 140 NWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
|.+++..|..|.++++|++|++++|.+++.+|. ..+..+++|++|++++|.+++..+...|+++++|++|++++|+++.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999988899999999999999999999865654 1388999999999999999885443378999999999999999987
Q ss_pred ccCCcc
Q 027116 219 IDGSKV 224 (228)
Q Consensus 219 i~~~~~ 224 (228)
+....+
T Consensus 163 ~~~~~l 168 (844)
T 3j0a_A 163 VCEHEL 168 (844)
T ss_dssp CCSGGG
T ss_pred eCHHHc
Confidence 655443
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=143.51 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=118.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.++..++.. |.++++|++|++++|.+++..+..+.
T Consensus 55 l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNENIVSA-----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCE-----eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc
Confidence 4678999999998854 33566888999999999999998877655 78899999999999999888888889
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
.+++|++|++++|.+++ ++...+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.++.++...|
T Consensus 126 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp TCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred ccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 99999999999999984 444478889999999999999988 666578888999999999998888776544
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=141.50 Aligned_cols=140 Identities=24% Similarity=0.314 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc--
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-- 149 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-- 149 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|+++...+.. |..+++|++|++++|.++...+..
T Consensus 87 l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~ 157 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFN 157 (440)
T ss_dssp CSSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTT
T ss_pred CCCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhh
Confidence 3567888888887753 23345666777777777777776655544 566666666666666665443333
Q ss_pred -----------------------cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116 150 -----------------------LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206 (228)
Q Consensus 150 -----------------------~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 206 (228)
+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+++..+. .|.++++|
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L 233 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHL 233 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChh-hhccCccC
Confidence 444555555555555555 444 355566666666666666663333 66777777
Q ss_pred cEEECCCCcCCcccCCcc
Q 027116 207 NTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 207 ~~L~L~~N~i~~i~~~~~ 224 (228)
++|++++|+|+.++...|
T Consensus 234 ~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CEEECTTCCCCEECTTSS
T ss_pred CEEECCCCceeEEChhhh
Confidence 777777777777666544
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=6.8e-18 Score=151.41 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +.++++|++|++++|.++...+..|.
T Consensus 24 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CTTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhc
Confidence 3567888888887754 23344666677777777777766655544 55566666666666666644434566
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|++|++++|.++ .+++..++.+++|++|++++|.+++..+. .+..+++|++|++++|+++.++.
T Consensus 95 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp TCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCH
T ss_pred cCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCH
Confidence 6666666666666665 34433556666666666666666653333 55555666666666665555443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=2.2e-17 Score=134.43 Aligned_cols=136 Identities=25% Similarity=0.325 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccc-ccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAG-CVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 150 (228)
..+++.|++++|.+.. ..+..+..+++|++|++++|.+++ ..+.. +..+++|++|++++|.+++..|..+
T Consensus 125 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 125 LRNLIYLDISHTHTRV-----AFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp CTTCCEEECTTSCCEE-----CSTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccCCCEEECCCCcCCc-----cchhhcccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHh
Confidence 4578999999999843 334568889999999999999987 44544 8899999999999999998888899
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCC-CCcEEECCCCcCCc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR-KLNTLHLGGTEIAM 218 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~N~i~~ 218 (228)
..+++|++|++++|.+++ ++...+..+++|+.|++++|.+++..+. .+..++ +|++|++++|+++.
T Consensus 196 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEEC
T ss_pred cCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccCCCeec
Confidence 999999999999999984 5554789999999999999999996666 888884 99999999999875
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=4.2e-17 Score=134.19 Aligned_cols=119 Identities=24% Similarity=0.313 Sum_probs=94.0
Q ss_pred ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
..+..+++|++|++++|.++..+.. + .++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~-----~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ 236 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQG-----L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSL 236 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSS-----C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTG
T ss_pred hhccCCCCcCEEECCCCccccCCcc-----c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhc
Confidence 3455666666666666666653332 2 2678888888888887777888899999999999999984 444478
Q ss_pred cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
..+++|+.|++++|.++. +|. .+..+++|++|++++|+|+.++...|
T Consensus 237 ~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVK-VPG-GLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp GGSTTCCEEECCSSCCSS-CCT-TTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred cCCCCCCEEECCCCcCcc-CCh-hhccCCCcCEEECCCCcCCccChhhc
Confidence 888999999999999986 888 78889999999999999999887766
No 59
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.3e-17 Score=125.79 Aligned_cols=127 Identities=22% Similarity=0.309 Sum_probs=108.6
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.|..+.|.. ....++.|++++|.+..... ...|..+++|++|++++|++++..+.. |..+++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~ 79 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH 79 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCccc
Confidence 7788888864 23478999999999854221 235789999999999999999987766 899999
Q ss_pred CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI 196 (228)
Q Consensus 132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p 196 (228)
|++|+|++|++++..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999988888899999999999999999965565 89999999999999999987443
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=2.9e-17 Score=137.09 Aligned_cols=141 Identities=23% Similarity=0.209 Sum_probs=119.1
Q ss_pred eEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccC
Q 027116 65 RVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFN 143 (228)
Q Consensus 65 gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~ 143 (228)
...|.. ..++++++++.... ... ...++.|++++|++++..+.. +. .+++|++|+|++|.++
T Consensus 15 ~C~C~~-----~~l~c~~~~l~~iP-----~~~---~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 15 NCLCAS-----NILSCSKQQLPNVP-----QSL---PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TCEEET-----TEEECCSSCCSSCC-----SSC---CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCC
T ss_pred CCEECC-----CEEEeCCCCcCccC-----ccC---CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCC
Confidence 456642 36899999986532 221 246899999999999987765 66 8999999999999999
Q ss_pred cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 144 NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 144 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
+..+..|..+++|++|+|++|.++ .++...+..+++|+.|+|++|.|++..+. .|.++++|++|+|++|+|+.++...
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeCHHH
Confidence 887788999999999999999998 57665799999999999999999984445 8999999999999999999998765
Q ss_pred c
Q 027116 224 V 224 (228)
Q Consensus 224 ~ 224 (228)
|
T Consensus 156 ~ 156 (361)
T 2xot_A 156 I 156 (361)
T ss_dssp T
T ss_pred h
Confidence 4
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.8e-17 Score=146.80 Aligned_cols=121 Identities=23% Similarity=0.254 Sum_probs=97.9
Q ss_pred ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-ccccccCCCCCCCEEeccCccccCccChhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 174 (228)
..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|. .
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~ 492 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGI----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-V 492 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTT----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-T
T ss_pred hhhhccccCCEEECcCCCCCccchhh----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-h
Confidence 35667777777777777777766655 7788888888888888886 4677888889999999999988854444 7
Q ss_pred hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
+..+++|+.|++++|++++..|. .+..+++|++|++++|+|+.+|..
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCCCEESC
T ss_pred hcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCcccCHh
Confidence 88889999999999999885566 888899999999999999988876
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.3e-17 Score=137.53 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCcccccccccC------cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc
Q 027116 73 GRVIKLDLAQIRKWESAEWYMN------ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI 146 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 146 (228)
.+++.|++++|++. +..... ...+..+++|++|++++|.++. .|.. +..+++|++|++++|.+++ +
T Consensus 150 ~~L~~L~L~~n~~~--~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~----l~~l~~L~~L~L~~N~l~~-l 221 (328)
T 4fcg_A 150 NRLRELSIRACPEL--TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS----IANLQNLKSLKIRNSPLSA-L 221 (328)
T ss_dssp TTCCEEEEEEETTC--CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGG----GGGCTTCCEEEEESSCCCC-C
T ss_pred cCCCEEECCCCCCc--cccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHh----hcCCCCCCEEEccCCCCCc-C
Confidence 46777777776542 211000 0112345666666666666653 2222 5555666666666666653 3
Q ss_pred ccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 147 FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 147 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTT
T ss_pred chhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCc
Confidence 34455566666666666555555554 555566666666666555555555 555566666666666543
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.3e-17 Score=139.78 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=41.5
Q ss_pred cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
+..+++|++|++++|.+++ +++..+..+++|+.|++++|.+++..+. .|..+++|++|+|++|+|+.++...|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcCCccChHHh
Confidence 3444455555555555542 3233556666666666666666653333 56666677777777777766665543
No 64
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=8.4e-18 Score=122.87 Aligned_cols=129 Identities=26% Similarity=0.320 Sum_probs=102.9
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.+++.|++++|.+.. +. + +..+..+++|++|++++|.+++. + . +..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~-~~--~-~~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNE-GK--L-EGLTDEFEELEFLSTINVGLTSI-A-N----LPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBT-TB--C-CSCCTTCTTCCEEECTTSCCCCC-T-T----CCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCCh-hH--H-HHHHhhcCCCcEEECcCCCCCCc-h-h----hhcCCCCCEEECCCCcccchHHHHhhh
Confidence 568889999998841 11 2 33568889999999999999876 2 2 888999999999999998777877778
Q ss_pred CCCCCEEeccCccccCccC-hhhhcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCC
Q 027116 153 LSSLKHLSLFHNRLNGSVD-IKELDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGG 213 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~ 213 (228)
+++|++|++++|.+++ ++ ...+..+++|++|++++|.+++ ++. ..+..+++|++|++++
T Consensus 87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 8999999999999984 43 1378889999999999999988 443 3688889999998864
No 65
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=5.5e-17 Score=121.92 Aligned_cols=127 Identities=24% Similarity=0.328 Sum_probs=108.9
Q ss_pred CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116 60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN 130 (228)
Q Consensus 60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~ 130 (228)
.|.|.++.|.. ....++.|++++|++.. +++..+..+++|++|++++|.+++.++.. +..++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~ 76 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKLT 76 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-----eCHHHhcCcccccEEECCCCcceEeChhH----ccCCC
Confidence 37899999864 23578999999999854 44556789999999999999999877765 78999
Q ss_pred CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI 196 (228)
Q Consensus 131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p 196 (228)
+|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+.+..+
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999877777899999999999999998 6776567889999999999999998443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.2e-18 Score=137.33 Aligned_cols=140 Identities=17% Similarity=0.143 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCC-----CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc--
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPF-----QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-- 145 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-- 145 (228)
..++.|++++|.+... +..+..+ ++|++|++++|++++..+.. +..+++|++|++++|++.+.
T Consensus 121 ~~L~~L~Ls~N~l~~~------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSEEEEESCBCSSS------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHH
T ss_pred CCccEEEccCCCCcch------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchH
Confidence 4556666666665332 1222333 56666666666666555444 66666777777777666543
Q ss_pred ccccc--CCCCCCCEEeccCccccC--ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 146 IFSSL--GGLSSLKHLSLFHNRLNG--SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 146 ~~~~~--~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+..+ ..+++|++|++++|.+++ .++...+..+++|+.|++++|.+++..|...+..+++|++|++++|+|+++|.
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 22233 566666667776666652 12222344566677777777776664433245556666777777776666655
Q ss_pred C
Q 027116 222 S 222 (228)
Q Consensus 222 ~ 222 (228)
.
T Consensus 271 ~ 271 (312)
T 1wwl_A 271 G 271 (312)
T ss_dssp S
T ss_pred h
Confidence 3
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=6.1e-17 Score=133.39 Aligned_cols=146 Identities=28% Similarity=0.358 Sum_probs=113.1
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.|..+.|.. ....++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence 7898888864 23478999999999854 34456889999999999999999877765 889999
Q ss_pred CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC--CCChhhhcCCCCCcEE
Q 027116 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN--PVIPKDYRGLRKLNTL 209 (228)
Q Consensus 132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~L 209 (228)
|++|++++|.++ .+|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.++. ..+. .+..+ +|++|
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L 177 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYL 177 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCC
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEE
Confidence 999999999998 5555544 78999999999998 5666578899999999999998863 2333 55555 66666
Q ss_pred ECCCCcCCcccC
Q 027116 210 HLGGTEIAMIDG 221 (228)
Q Consensus 210 ~L~~N~i~~i~~ 221 (228)
++++|+++.+|.
T Consensus 178 ~l~~n~l~~l~~ 189 (332)
T 2ft3_A 178 RISEAKLTGIPK 189 (332)
T ss_dssp BCCSSBCSSCCS
T ss_pred ECcCCCCCccCc
Confidence 666666665554
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.1e-17 Score=131.65 Aligned_cols=139 Identities=14% Similarity=0.251 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCC-cccccccccCcccccCCCCCCEEeCCC-CCcccccCcccccccCCCCCCc-----------------
Q 027116 73 GRVIKLDLAQIR-KWESAEWYMNASLFTPFQQLESLDLTW-NSIAGCVENKGLDRLSRLNNLK----------------- 133 (228)
Q Consensus 73 ~~v~~L~l~~n~-l~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~----------------- 133 (228)
.+++.|++++|. ++. +.+..|..+++|++|++++ |.+++..+.. |..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~lp~~~~ 125 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQ-----LESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKMFPDLTK 125 (239)
T ss_dssp TTCCEEEEECCSSCCE-----ECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCSCCCCTT
T ss_pred CCCcEEeCCCCCCcce-----eCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcccccccc
Confidence 456666666665 532 2233455556666666665 5555544333 44444444
Q ss_pred --------EEECCCC-ccCcccccccCCCCCCC-EEeccCccccCccChhhhcCCCCCCEEEcccCC-CCCCCChhhhcC
Q 027116 134 --------FLHLDFN-WFNNSIFSSLGGLSSLK-HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INNPVIPKDYRG 202 (228)
Q Consensus 134 --------~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~ 202 (228)
+|++++| .+++..+..|..+++|+ +|++++|+++ .+|...+.. ++|+.|++++|+ +++ ++...|..
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~ 202 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGG 202 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTT
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhc
Confidence 5555555 55544444455666666 6666666665 555533333 566666666663 665 44435666
Q ss_pred C-CCCcEEECCCCcCCcccCCc
Q 027116 203 L-RKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 203 l-~~L~~L~L~~N~i~~i~~~~ 223 (228)
+ ++|++|++++|+++.+|...
T Consensus 203 l~~~L~~L~l~~N~l~~l~~~~ 224 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALPSKG 224 (239)
T ss_dssp CSBCCSEEECTTCCCCCCCCTT
T ss_pred cccCCcEEECCCCccccCChhH
Confidence 6 67777777777777666553
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=7.4e-17 Score=132.88 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=91.7
Q ss_pred cccccCCCCCCEEeCCCCCccc--ccCcccccccCC--------------------CCCCcEEECCCCccCcccccccCC
Q 027116 95 ASLFTPFQQLESLDLTWNSIAG--CVENKGLDRLSR--------------------LNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~--------------------l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
+..+..+++|++|++++|.++. ..+.. +.. .++|++|++++|.+++..+..+..
T Consensus 140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGA----FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp SGGGSSCSSCCEEECCSCCCBGGGSCTTS----SCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred HhHhCCCccCCEEECCCCccccCCCCccc----ccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence 3446777778888888777753 22221 211 146777777777777666677888
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
+++|++|++++|.+++ ++...+..+++|+.|++++|+++. +|. .+..+++|++|++++|+|+.++...|
T Consensus 216 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSR-VPA-GLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCB-CCT-TGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCee-cCh-hhhcCccCCEEECCCCCCCccChhHc
Confidence 8889999999998884 444478888899999999999886 887 78888999999999999988887654
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=1.9e-17 Score=124.46 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=109.9
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCC-CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPF-QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 150 (228)
...++.|++++|.+... +. +..+ ++|++|++++|.+++. +. +..+++|++|++++|.+++..+..+
T Consensus 18 ~~~L~~L~l~~n~l~~i------~~-~~~~~~~L~~L~Ls~N~l~~~-~~-----l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI------EN-LGATLDQFDAIDFSDNEIRKL-DG-----FPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSC------CC-GGGGTTCCSEEECCSSCCCEE-CC-----CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCceEEEeeCCCCchh------HH-hhhcCCCCCEEECCCCCCCcc-cc-----cccCCCCCEEECCCCcccccCcchh
Confidence 35789999999998642 12 3444 4999999999999986 32 8999999999999999996554555
Q ss_pred CCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEECCCCcCCcc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L~~N~i~~i 219 (228)
..+++|++|++++|.++ .+|. ..+..+++|+.|++++|.++. +|.. .+..+++|++|++++|.+.+.
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 88999999999999997 5664 368899999999999999987 6762 388999999999999987653
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=9.3e-17 Score=139.75 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc--cCcccccccCCCCCCcEEECCCCccCccccc-
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC--VENKGLDRLSRLNNLKFLHLDFNWFNNSIFS- 148 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~- 148 (228)
...++.|++++|.+.+ ..+..+..+++|++|++++|++++. .+.. +..+++|++|++++|.+++.+|.
T Consensus 323 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTD-----TVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCEEECCSSCCCT-----TTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGC
T ss_pred CCcccEEEeECCccCh-----hhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccc
Confidence 4567778888887743 1234466777788888888877752 2232 66777777888887777764554
Q ss_pred ccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 149 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
.+..+++|++|++++|.+++.+|. .+. ++|+.|++++|+++. +|. .+..+++|++|++++|+|+.+|..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKS-IPK-QVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCC-CCG-GGGGCTTCCEEECCSSCCCCCCTT
T ss_pred hhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccc-cch-hhhcCCCCCEEECCCCcCCccCHH
Confidence 366677777777777777655443 222 577777777777775 776 555777778888888877777765
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=120.91 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=106.3
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.|..+.|.+ ....++.|++++|.+.. ++ ..|..+++|++|++++|.+++..+.. |..+++
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-----ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~~ 79 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-----VP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNMTQ 79 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-----CC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-----hH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCCCC
Confidence 5677777754 23578999999999853 22 46889999999999999999987766 899999
Q ss_pred CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|...+..+++|+.|++++|.+..
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999888888999999999999999998 6777678999999999999999875
No 73
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.9e-17 Score=118.34 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=99.5
Q ss_pred CCCCCCEEeCCCCCcc-cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 100 PFQQLESLDLTWNSIA-GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..++++.|++++|.++ +..+.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred CCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence 3478999999999998 555554 78999999999999999866 7789999999999999999965665 77789
Q ss_pred CCCCEEEcccCCCCCCCC--hhhhcCCCCCcEEECCCCcCCcccC
Q 027116 179 SNLEELDMSDNAINNPVI--PKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p--~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
++|++|++++|.+++ ++ . .+..+++|++|++++|+++.++.
T Consensus 88 ~~L~~L~ls~N~i~~-~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD-LSTIE-PLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTCCEEECTTSCCCS-HHHHG-GGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCEEECCCCcCCC-hHHHH-HHhhCCCCCEEeCcCCcccchHH
Confidence 999999999999998 44 4 78999999999999999998876
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=2.9e-16 Score=132.01 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=20.4
Q ss_pred CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+++|+.|++++|.+++..|. .+..+++|++|++++|+++.++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp CTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEEE
T ss_pred CCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcccC
Confidence 34444444444444442233 4555555555555555555444
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=1.6e-16 Score=140.67 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=124.5
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+.
T Consensus 56 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp CTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred CccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc
Confidence 4679999999999854 44567899999999999999999887776 89999999999999999987788899
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc--EEECCCCcCCcccCCccc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN--TLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~--~L~L~~N~i~~i~~~~~~ 225 (228)
.+++|++|++++|.+++ ++...+..+++|++|++++|.+++ ++...+..+++|+ .|++++|+++.+++..+.
T Consensus 127 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp TCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 99999999999999984 421156669999999999999998 5444899999999 999999999999887654
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=9.9e-17 Score=140.75 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=124.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++.++.. |.++++|++|++++|.+++..+..++
T Consensus 51 l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp CSSCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCcccc
Confidence 4679999999999854 44567899999999999999999987766 89999999999999999976666799
Q ss_pred CCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC----cEEECCCCcCCcccCCccc
Q 027116 152 GLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL----NTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L----~~L~L~~N~i~~i~~~~~~ 225 (228)
.+++|++|++++|.+++ .+|. .++++++|++|++++|.+++ ++...+..+++| +.|++++|+++.++...+.
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 99999999999999985 3676 89999999999999999998 444377777777 8999999999999887653
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=136.80 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=108.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc-ccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF-SSL 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~ 150 (228)
..+++.|++++|.+.. +.+..|..+++|++|++++|.+++.++.. +..+++|++|++++|.++...+ ..+
T Consensus 75 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 75 CVNLQALVLTSNGINT-----IEEDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred CCCCCEEECCCCccCc-----cCHhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcccCchhhh
Confidence 4678999999998854 33456788899999999999998766554 7888999999999999885444 368
Q ss_pred CCCCCCCEEeccCcc-ccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 151 GGLSSLKHLSLFHNR-LNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
..+++|++|++++|. ++ .++...+..+++|+.|++++|.+++..|. .+..+++|++|++++|+++.++.
T Consensus 146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCSTTHHH
T ss_pred ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccccchh
Confidence 888999999999884 55 56554788888888899988888885455 77777777777777777766553
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.6e-16 Score=127.61 Aligned_cols=128 Identities=28% Similarity=0.383 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.... + +..+++|++|++++|.+++... +..+++|++|++++|.+++. ..+.
T Consensus 67 l~~L~~L~L~~n~l~~~~-----~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~n~i~~~--~~l~ 131 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIK-----P--LANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGISDI--NGLV 131 (291)
T ss_dssp CTTCCEEECCSSCCCCCG-----G--GTTCTTCCEEECCSSCCCCGGG------GTTCTTCCEEECTTSCCCCC--GGGG
T ss_pred CCCCCEEEccCCccCCCc-----c--cccCCCCCEEECCCCcCCCChh------hccCCCCCEEECCCCcCCCC--hhhc
Confidence 356788888888874322 1 6777888888888888776432 67777888888888877753 3567
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|+|+.++
T Consensus 132 ~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp GCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCCCh
Confidence 77778888888887763 43 67777777777777777776 333 667777777777777777765
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.8e-16 Score=139.23 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+.. +.+..|..+++|++|++++|.+++.++.. |..+++|++|+|++|.+++..+..|..
T Consensus 75 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCC-----CChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 456777777777643 22233445555555555555555444433 344444444444444444322222334
Q ss_pred CCCCCEEeccCcccc
Q 027116 153 LSSLKHLSLFHNRLN 167 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~ 167 (228)
+++|++|++++|.++
T Consensus 146 l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 146 TPKLTTLSMSNNNLE 160 (597)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEEeeCCcCC
Confidence 444444444444443
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=2e-16 Score=141.84 Aligned_cols=123 Identities=27% Similarity=0.364 Sum_probs=87.9
Q ss_pred cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc--------cccCCCCCCCEEeccCccc
Q 027116 95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF--------SSLGGLSSLKHLSLFHNRL 166 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l 166 (228)
+..+..+++|++|++++|++++.++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhh----hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 344666777777777777777766554 6777777788887777764322 1256777788888888877
Q ss_pred cCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116 167 NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223 (228)
Q Consensus 167 ~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~ 223 (228)
+ .+|...+..+++|+.|++++|++++ +|...|..+++|+.|++++|+++.++...
T Consensus 549 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 549 D-EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred C-CCCHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 7 6776567778888888888888876 56546777788888888888877776543
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5e-17 Score=132.93 Aligned_cols=138 Identities=21% Similarity=0.197 Sum_probs=103.5
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCcc--cc-
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNS--IF- 147 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~- 147 (228)
..++.|++++|++.. +.+..++.+++|++|++++|++.+.. +.. ..+..+++|++|++++|.+++. .+
T Consensus 149 ~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN-----FSCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCC-----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCcEEEeeCCCCcc-----chHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCcCcchHHHHH
Confidence 678999999999854 34456888999999999999876642 111 0037788999999999988732 22
Q ss_pred cccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 148 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
..+..+++|++|++++|.+++..|...+..+++|++|++++|.++. +|. .+. ++|++|++++|+|+.+|.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK-GLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS-SCC--SEEEEEECCSSCCCSCCC
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh-hcc--CCceEEECCCCCCCCChh
Confidence 3345778899999999998865543356677889999999998885 777 444 788888998888888754
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.6e-16 Score=137.66 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=67.2
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccCcccccccCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.++.|++++|.+.. +.+..+..+++|++|++++|.+++.++.. +. .+++|++|+|++|.+++. | ....
T Consensus 121 ~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~-~-~~~~ 189 (487)
T 3oja_A 121 GKKNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-K-GQVV 189 (487)
T ss_dssp SCEEEECCSSCCCS-----GGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-E-CCCC
T ss_pred CCCEEECCCCCCCC-----CCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccc-c-cccc
Confidence 34555555555432 11223445555555555555555544433 32 455555555555555543 1 1233
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
+++|++|++++|.++ .+|+ .+..+++|+.|++++|.+++ +|. .+..+++|+.|++++|++.
T Consensus 190 l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 190 FAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCCCC-CCCH-hHcCCCCccEEEecCCcCcc-cch-hhccCCCCCEEEcCCCCCc
Confidence 555666666666655 3444 35555566666666666655 555 4555556666666666555
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.1e-16 Score=127.39 Aligned_cols=109 Identities=32% Similarity=0.479 Sum_probs=56.1
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 177 (228)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ .+..
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~--~l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT--PLAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG--GGTT
T ss_pred hcCCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CCh--hhcC
Confidence 3444444444444444444221 4445555555555555543322 445555555555555554 233 2555
Q ss_pred CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+++|+.|++++|.+++ ++. +..+++|++|++++|+++.++
T Consensus 172 l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCccc
Confidence 5566666666666555 332 455666666666666666554
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=2.2e-16 Score=138.91 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCccccc-
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNSIFS- 148 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~- 148 (228)
...++.|++++|.+.+ ..+..+..+++|++|++++|++++.. +.. +..+++|++|++++|.+++.+|.
T Consensus 352 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTD-----SVFQGCSTLKRLQTLILQRNGLKNFFKVALM----TKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCEEECCSSCCCT-----TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT----TTTCTTCCEEECTTSCCBSCCSSC
T ss_pred CCCceEEECCCCcccc-----chhhhhcccCCCCEEECCCCCcCCcccchhh----hcCCCCCCEEECCCCcCCCccChh
Confidence 4567888888888743 12345677788888888888887632 222 67778888888888888764444
Q ss_pred ccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 149 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
.+..+++|++|++++|.+++.+|. .+. ++|+.|++++|+++. +|. .+..+++|++|++++|+|+.+|..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMS-IPK-DVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCC-CCT-TTTSSCCCSEEECCSSCCCCCCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcc-cCh-hhcCCCCCCEEECCCCCCCCCCHH
Confidence 466777788888888777654443 222 577788888887775 776 455777888888888888777765
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.9e-16 Score=127.48 Aligned_cols=129 Identities=25% Similarity=0.395 Sum_probs=96.0
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.... + +..+++|++|++++|.+++.. . +..+++|++|++++|.+++. + .+.
T Consensus 62 l~~L~~L~L~~n~i~~~~-----~--~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~-~-~l~ 126 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLA-----P--LKNLTKITELELSGNPLKNVS-A-----IAGLQSIKTLDLTSTQITDV-T-PLA 126 (308)
T ss_dssp CTTCCEEECCSSCCCCCG-----G--GTTCCSCCEEECCSCCCSCCG-G-----GTTCTTCCEEECTTSCCCCC-G-GGT
T ss_pred cCCCCEEEccCCcCCCCh-----h--HccCCCCCEEEccCCcCCCch-h-----hcCCCCCCEEECCCCCCCCc-h-hhc
Confidence 356788888888774322 1 677888888888888887643 2 77788888888888888753 3 377
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|++|++++|.++ .++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|+++.++.
T Consensus 127 ~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp TCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcChh
Confidence 8888888888888887 454 37778888888888888877 443 6778888888888888877664
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=3.4e-16 Score=137.62 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=105.8
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|.++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 578899999998854 34456888999999999999998887766 888999999999999998 56655 7
Q ss_pred CCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC--cEEECCCCcC--CcccCCc
Q 027116 153 LSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL--NTLHLGGTEI--AMIDGSK 223 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L--~~L~L~~N~i--~~i~~~~ 223 (228)
+++|++|++++|.+++ .+|. .++++++|++|++++|.+++. .+..+++| ++|++++|++ +.+....
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCccc
Confidence 8999999999999984 2334 788999999999999998862 33444555 9999999988 5554443
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=118.57 Aligned_cols=114 Identities=27% Similarity=0.346 Sum_probs=99.8
Q ss_pred CCCCCCEEeCCCCCcc-cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 100 PFQQLESLDLTWNSIA-GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..++|++|++++|.++ +..+.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 4578999999999998 455554 68899999999999999866 7789999999999999999965775 77789
Q ss_pred CCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcccC
Q 027116 179 SNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
++|++|++++|.+++ ++. ..+..+++|++|++++|+++.++.
T Consensus 95 ~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 95 PNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp TTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred CCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 999999999999998 552 388999999999999999998876
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=4.7e-16 Score=126.05 Aligned_cols=128 Identities=28% Similarity=0.318 Sum_probs=112.1
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.+++.|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 46 ~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred CcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 46889999999985432 37889999999999999998655 7889999999999999985 33 4899
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+++|++|++++|.++ .++ .+..+++|+.|++++|.+++ + . .+..+++|++|++++|+++.++.
T Consensus 111 l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 111 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEEEccCCccccchh
Confidence 999999999999998 454 78999999999999999998 4 4 78999999999999999998864
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=2.8e-16 Score=128.74 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=60.6
Q ss_pred cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116 97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD 176 (228)
Q Consensus 97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 176 (228)
.+..+++|++|++++|.+++..+... +..+++|++|++++|.+++. + ....+++|++|++++|.++ .+|. .+.
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~ 211 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQ 211 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGG
T ss_pred hhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchh-hhc
Confidence 34445555555555555555443321 12455566666666655533 2 1223556666666666665 3444 455
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
.+++|+.|++++|.+++ +|. .+..+++|++|++++|+++
T Consensus 212 ~l~~L~~L~L~~N~l~~-l~~-~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCCB
T ss_pred ccCcccEEECcCCcccc-hhh-HhhcCCCCCEEEccCCCcc
Confidence 55666666666666664 555 5555666666666666655
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4e-16 Score=124.70 Aligned_cols=127 Identities=28% Similarity=0.330 Sum_probs=94.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|.+.... + +..+++|++|++++|++++..+ +.. ++|++|++++|.+++. +.+.
T Consensus 62 l~~L~~L~L~~N~i~~~~-----~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~~--~~l~ 125 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLS-----P--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRDT--DSLI 125 (263)
T ss_dssp CTTCCEEECCSSCCCCCG-----G--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSBS--GGGT
T ss_pred CCCCCEEECCCCccCCCh-----h--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCCC--hhhc
Confidence 356778888888774322 1 6777888888888888877543 333 7888888888888753 3577
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.+++|++|++++|+++ .++ .+..+++|+.|++++|.+++ + . .+..+++|++|++++|+++..+
T Consensus 126 ~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~-~-~-~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITN-T-G-GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCB-C-T-TSTTCCCCCEEEEEEEEEECCC
T ss_pred CcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcc-h-H-HhccCCCCCEEeCCCCcccCCc
Confidence 8888888888888887 454 67788888888888888887 3 3 6778888888888888877654
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=9.2e-17 Score=139.16 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=98.3
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC-CCCCCCEEeccCccccCccChhhhcCC
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG-GLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
.+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++ ++ ....+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~--~~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK--GQVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE--CCCCC
T ss_pred ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-cc--ccccC
Confidence 4678888889999888876655 78899999999999999988888776 78999999999999984 54 45568
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
++|+.|++++|.+++ +|. .+..+++|+.|++++|+|+.+|..
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEECTT
T ss_pred CCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCcccchh
Confidence 999999999999998 777 688999999999999999998865
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-16 Score=131.16 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=96.5
Q ss_pred CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc-CCCCCCCEEeccCccccCccChhhhcCC
Q 027116 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-GGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
.+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+ ..+++|++|++++|.++ .++ ....+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~l 190 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK--GQVVF 190 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE--CCCCC
T ss_pred ccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccc--ccccc
Confidence 4677888888888888876654 7788999999999999998777766 47899999999999998 455 44568
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
++|+.|++++|.+++ +|. .+..+++|++|++++|+|+.+|..
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~L~~N~l~~l~~~ 232 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLIEKA 232 (317)
T ss_dssp TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEECTT
T ss_pred ccCCEEECCCCcCCc-chh-hhcccCcccEEECcCCcccchhhH
Confidence 999999999999998 787 688999999999999999998864
No 93
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=5.7e-16 Score=115.86 Aligned_cols=105 Identities=23% Similarity=0.202 Sum_probs=80.7
Q ss_pred EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116 76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
+.+++++|++..... .. .++|++|++++|.+++..+.. |..+++|++|+|++|++++..+..|..+++
T Consensus 12 ~~l~~s~n~l~~ip~-----~~---~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-----GI---PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTTSCCSSCCS-----CC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEeCCCCcCccCc-----cC---CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 468888888754322 21 367888888888888876665 788888888888888888666666788888
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
|++|+|++|+++ .+|...+..+++|+.|+|++|.++.
T Consensus 80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888888888887 4665467888888888888888876
No 94
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=5e-16 Score=138.63 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=98.5
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccccc
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIFSS 149 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~ 149 (228)
+++.|++++|.+.. ++...+..+++|++|++++|.++..++.. +.. +.++++|++|++++|.++ .+|..
T Consensus 434 ~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 434 NVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNS-LKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSS-SEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHH-hccccccccccCCccEEECcCCcCC-ccChh
Confidence 67777777777743 33445566788888888888887443332 100 112337888888888887 56666
Q ss_pred cC--CCCCCCEEeccCccccCccChhhhcCCCCCCEEEc------ccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 150 LG--GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDM------SDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 150 ~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+. .+++|++|++++|.+++ +|. .+..+++|+.|++ ++|.+.+.+|. .+..+++|++|++++|+++.||.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCCBCCS
T ss_pred hhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcCCccCH
Confidence 65 78888888888888874 776 6777888888888 45667776777 77778888888888888877776
Q ss_pred C
Q 027116 222 S 222 (228)
Q Consensus 222 ~ 222 (228)
.
T Consensus 584 ~ 584 (636)
T 4eco_A 584 K 584 (636)
T ss_dssp C
T ss_pred h
Confidence 4
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.9e-17 Score=133.39 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc--cc--cccCCCCCCCEEeccCccccCccChh---
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS--IF--SSLGGLSSLKHLSLFHNRLNGSVDIK--- 173 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~--- 173 (228)
+++|++|++++|.+++.++.. +..+++|++|++++|++.+. .+ ..+..+++|++|++++|+++ .++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence 444444555554444443333 44455555555555544321 11 11234444444444444443 22210
Q ss_pred hhcCCCCCCEEEcccCCCCCCCChhhhcCC---CCCcEEECCCCcCCcccC
Q 027116 174 ELDSLSNLEELDMSDNAINNPVIPKDYRGL---RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 174 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l---~~L~~L~L~~N~i~~i~~ 221 (228)
.+..+++|++|++++|.+++..|. .+..+ ++|++|++++|+|+++|.
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred HHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhh
Confidence 123444555555555555543333 33332 345555555555544443
No 96
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=8.7e-16 Score=115.32 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=80.9
Q ss_pred EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116 76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155 (228)
Q Consensus 76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 155 (228)
+.++++++++.... ... .++|++|++++|.+++.++.. |..+++|++|+|++|++++..+..|..+++
T Consensus 15 ~~l~~~~n~l~~iP-----~~~---~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-----AGI---PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCC-----SCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccC-----CCc---CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 46888888875422 222 267888888888888877665 788888888888888888665556778888
Q ss_pred CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
|++|+|++|+++ .+|...+..+++|++|++++|.+..
T Consensus 83 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 83 LTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 888888888887 5666458888888888888888876
No 97
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=9.3e-17 Score=140.49 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=111.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc-ccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSL 150 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~ 150 (228)
..+++.|++++|++.. +.+..|..+++|++|++++|.+++.++.. +..+++|++|++++|.+++. .|..+
T Consensus 49 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINT-----IEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCCcCc-----cChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhh
Confidence 4679999999999854 44567889999999999999999877765 88999999999999999863 56678
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcC------------------------CCCC
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG------------------------LRKL 206 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~------------------------l~~L 206 (228)
..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|. .+.. +++|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhhHhhcccc
Confidence 99999999999999855578765889999999999999999885555 5544 4566
Q ss_pred cEEECCCCcCCcc
Q 027116 207 NTLHLGGTEIAMI 219 (228)
Q Consensus 207 ~~L~L~~N~i~~i 219 (228)
++|++++|+++.+
T Consensus 199 ~~L~L~~n~l~~~ 211 (549)
T 2z81_A 199 RYLELRDTNLARF 211 (549)
T ss_dssp SEEEEESCBCTTC
T ss_pred cEEEccCCccccc
Confidence 6666666666654
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.9e-16 Score=124.17 Aligned_cols=126 Identities=28% Similarity=0.322 Sum_probs=108.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|++++|++.... .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. |. +.
T Consensus 40 l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~l-~~-~~ 104 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNL-NG-IP 104 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSCC-TT-CC
T ss_pred cCcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCCc-Cc-cc
Confidence 357889999999985422 47889999999999999998665 78899999999999999863 33 33
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
. ++|++|++++|.++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|+|+.+
T Consensus 105 ~-~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp C-SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC
T ss_pred c-CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch
Confidence 3 89999999999998 465 68999999999999999998 53 688899999999999999987
No 99
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=135.94 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc--ccccccC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN--SIFSSLG 151 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~ 151 (228)
.++.|++++|++... ..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++ .+|..+.
T Consensus 303 ~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHM-------LCPSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp CCSEEEEESSCCCCC-------CCCSSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred ceeEEEcCCCccccc-------cchhhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHh
Confidence 356666666665221 11267899999999999999876665 8999999999999999997 5567799
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 224 (228)
.+++|++|++++|.+++.+|...+..+++|+.|++++|.+++.+|. .+. ++|++|++++|+|+.+|...+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~ip~~~~ 441 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKSIPKQVV 441 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCCCCGGGG
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccccchhhh
Confidence 9999999999999999668875688899999999999999886655 333 799999999999999987544
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=130.47 Aligned_cols=136 Identities=21% Similarity=0.171 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc---cCcccccccCCCCCCcEEECCCCccCccccc
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC---VENKGLDRLSRLNNLKFLHLDFNWFNNSIFS 148 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 148 (228)
..+++.|++++|.+.. +.+..+..+++|++|++++|++.+. .+.. .+..+++|++|++++|.++. ++.
T Consensus 144 ~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~-l~~ 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA-----FSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---CPHKFPAIQNLALRNTGMET-PTG 214 (310)
T ss_dssp CSCCCEEEEECCSSCC-----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---CTTSSCCCCSCBCCSSCCCC-HHH
T ss_pred ccCCCEEEeeCCCcch-----hhHHHhccCCCCCEEECCCCCCccchhhhHHH---hhhcCCCCCEEECCCCCCCc-hHH
Confidence 3478888888888743 3445678889999999999987652 2221 13567778888888888763 222
Q ss_pred ----ccCCCCCCCEEeccCccccCccChhhhcCC---CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 149 ----SLGGLSSLKHLSLFHNRLNGSVDIKELDSL---SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 149 ----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+..+++|++|++++|.+++..|. .+..+ ++|++|++++|+++. +|. .+. ++|++|++++|+|+.+|.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~-lp~-~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQ-VPK-GLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCS-CCS-CCC--SCCSCEECCSCCCCSCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCc-hhh-hhc--CCCCEEECCCCcCCCCch
Confidence 245667788888888888755454 45554 578888888888775 666 442 677778888887777643
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=142.03 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc--
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-- 149 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-- 149 (228)
..+++.|++++|.. .+. +.+..|.++++|++|++++|.+++..|.. |.++++|++|+|++|.+++..|..
T Consensus 47 l~~L~~LdLs~n~~--~~~--i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 47 LEQLQLLELGSQYT--PLT--IDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CCSCSEEEECTTCC--CCE--ECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred cccCeEEeCCCCCC--ccc--cCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCcc
Confidence 46789999999965 232 55677899999999999999999987776 899999999999999999866665
Q ss_pred cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCC--CCCcEEECCCCcCCc
Q 027116 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGL--RKLNTLHLGGTEIAM 218 (228)
Q Consensus 150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l--~~L~~L~L~~N~i~~ 218 (228)
+..+++|++|++++|.+++..+...++++++|++|++++|.+++..+. .+..+ ++|+.|++++|.++.
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCC
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCcccc
Confidence 899999999999999998654434789999999999999999885555 55554 566666666666554
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.1e-15 Score=138.36 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccccc
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIFSS 149 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~ 149 (228)
+++.|++++|.+.. ++...+..+++|++|++++|.++..+... +.. +.++++|++|+|++|+++ .+|..
T Consensus 674 ~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~-~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 674 NASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENS-LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp CEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTS-SSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred CcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHH-hccccccccccCCccEEECCCCCCc-cchHH
Confidence 56666666666642 33344556778888888888887543332 000 112337888888888887 56666
Q ss_pred cC--CCCCCCEEeccCccccCccChhhhcCCCCCCEEEccc------CCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 150 LG--GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD------NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 150 ~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+. .+++|++|++++|.+++ +|. .+..+++|+.|+|++ |.+.+.+|. .+..+++|+.|+|++|+|+.||.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCCBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCCCccCH
Confidence 65 78888888888888874 676 677788888888865 666776776 77778888888888888877776
Q ss_pred C
Q 027116 222 S 222 (228)
Q Consensus 222 ~ 222 (228)
.
T Consensus 824 ~ 824 (876)
T 4ecn_A 824 K 824 (876)
T ss_dssp C
T ss_pred h
Confidence 5
No 103
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=6.9e-16 Score=115.87 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=98.6
Q ss_pred cccCCCCCCEEeCCCCCcccccCcccccccCCCC-CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN-NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
.+.+..+|++|++++|.++.. +. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHH
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchh
Confidence 467788999999999999865 33 44444 999999999999865 67999999999999999998 5776456
Q ss_pred cCCCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcccC
Q 027116 176 DSLSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
..+++|++|++++|.++. +|. ..+..+++|++|++++|+++.++.
T Consensus 85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 899999999999999987 664 368899999999999999998775
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=1.5e-15 Score=125.44 Aligned_cols=131 Identities=23% Similarity=0.311 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.+++++|.+..... +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+.
T Consensus 198 l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred CCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHh
Confidence 3467777777777643221 5667777777777777766543 56677777777777777643 3466
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
.+++|++|++++|.++ .++ .+..+++|+.|++++|.+++..+. .+..+++|++|++++|+++.+++
T Consensus 263 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQIS-DIS--VLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcCEEEccCCccC-CCh--hhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC
Confidence 7777777777777776 343 566777777777777777763334 67777777777777777776654
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=6.6e-16 Score=128.28 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=109.8
Q ss_pred ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116 61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131 (228)
Q Consensus 61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 131 (228)
|.+..|.|.+ ....+++|+|++|+|+. +++..|..+++|++|++++|++.+.++... |.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchh
Confidence 7888899964 23568999999999964 556779999999999999999876554322 778888
Q ss_pred CcE-EECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEccc-CCCCCCCChhhhcCCC-CCcE
Q 027116 132 LKF-LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKDYRGLR-KLNT 208 (228)
Q Consensus 132 L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~-~L~~ 208 (228)
+++ +.++.|+++...|..|..+++|++|++++|+++ .+|...+....++..+++.+ +.+.. ++...|..+. .+++
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVI 158 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhh
Confidence 775 566779998777888999999999999999997 45543444445555666654 34444 4443444443 4566
Q ss_pred EECCCCcCCcccCCcc
Q 027116 209 LHLGGTEIAMIDGSKV 224 (228)
Q Consensus 209 L~L~~N~i~~i~~~~~ 224 (228)
|++++|+|++|+...|
T Consensus 159 L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAF 174 (350)
T ss_dssp EECCSSCCCEECTTSS
T ss_pred hccccccccCCChhhc
Confidence 6666666666665544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2.7e-15 Score=132.97 Aligned_cols=127 Identities=30% Similarity=0.394 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|+|++|.+..... +..+++|+.|++++|.+++.. . +..+++|++|+|++|.+++. ..+.
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~-~-----l~~l~~L~~L~Ls~N~l~~l--~~l~ 128 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLDENKIKDLS-S-----LKDLKKLKSLSLEHNGISDI--NGLV 128 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCT-T-----STTCTTCCEEECTTSCCCCC--GGGG
T ss_pred CCCCCEEEeeCCCCCCChh-------hccCCCCCEEECcCCCCCCCh-h-----hccCCCCCEEEecCCCCCCC--cccc
Confidence 3456777777776643221 455666666666666665532 1 55556666666666665532 2355
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
.+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|+|+.+
T Consensus 129 ~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp GCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC
Confidence 55555555555555552 32 45555555555555555554 221 44455555555555555444
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=2.3e-15 Score=124.38 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
..++.|++++|.+...+. +..+++|++|++++|.+++.. . +..+++|++|++++|.+++. ..+..
T Consensus 221 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-A-----VKDLTKLKMLNVGSNQISDI--SVLNN 285 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-G-----GTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-h-----HhcCCCcCEEEccCCccCCC--hhhcC
Confidence 345555565555532111 445555666666665555431 1 45555566666666555533 23555
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
+++|++|++++|.+++..+ ..+..+++|+.|++++|++++ ++. +..+++|++|++++|+|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence 5556666666665553222 255555556666666665555 222 445555566666655554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=3.1e-15 Score=132.58 Aligned_cols=130 Identities=27% Similarity=0.301 Sum_probs=112.6
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..+++.|+|++|.+... ..+..+++|++|++++|.+++... +..+++|+.|+|++|.+++. ..+.
T Consensus 86 l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~l~~------l~~l~~L~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL-------SSLKDLKKLKSLSLEHNGISDING------LVHLPQLESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp CTTCCEEECCSSCCCCC-------TTSTTCTTCCEEECTTSCCCCCGG------GGGCTTCSEEECCSSCCCCC--GGGG
T ss_pred CCCCCEEECcCCCCCCC-------hhhccCCCCCEEEecCCCCCCCcc------ccCCCccCEEECCCCccCCc--hhhc
Confidence 46799999999998542 247889999999999999987532 88899999999999999865 5789
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
.+++|++|+|++|.+++ ++ .+..+++|+.|+|++|.+++ + . .+..+++|+.|+|++|+++..|..
T Consensus 151 ~l~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-l-~-~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHISD-L-R-ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp SCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCB-C-G-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred ccCCCCEEECcCCcCCC-ch--hhccCCCCCEEECcCCCCCC-C-h-HHccCCCCCEEEccCCcCcCCccc
Confidence 99999999999999985 44 38899999999999999998 5 3 689999999999999999876543
No 109
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=6.9e-15 Score=109.93 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=93.8
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
..+.+++++|.++..+.. + .++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|...+..+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~-----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCcc-----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC
Confidence 457899999999885543 3 488999999999999888888999999999999999998 57765788999999
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+|+|++|++++ ++...|..+++|++|+|++|+++...
T Consensus 82 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999998 66647899999999999999987543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=6.5e-15 Score=129.71 Aligned_cols=109 Identities=24% Similarity=0.352 Sum_probs=99.1
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
.|+.|++++|.+++.+ . +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred CceEEEecCCCCCCCc-C-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence 5889999999999853 3 788999999999999999 788899999999999999999994 77 799999999
Q ss_pred EEEcccCCCCCCC-ChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116 183 ELDMSDNAINNPV-IPKDYRGLRKLNTLHLGGTEIAMIDGS 222 (228)
Q Consensus 183 ~L~L~~N~l~~~~-p~~~~~~l~~L~~L~L~~N~i~~i~~~ 222 (228)
.|+|++|.+++.. |. .+..+++|+.|++++|+|+.+++.
T Consensus 512 ~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999944 77 899999999999999999998764
No 111
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.5e-14 Score=108.47 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183 (228)
Q Consensus 104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 183 (228)
-+.+++++|.++..+.. + .++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|...+..+++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence 47899999999775543 3 389999999999999888889999999999999999998 577756789999999
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
|+|++|+|++ +|...|..+++|++|++++|++...+.
T Consensus 86 L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 86 LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred EECCCCccce-eCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999999998 676469999999999999999986553
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=9e-15 Score=125.80 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=57.1
Q ss_pred cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116 99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l 178 (228)
..+++|++|++++|.+++..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++ ++ .+..+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l 352 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLANL 352 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTC
T ss_pred cCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhccC
Confidence 334444444444444444322 3445555555555555554433 4455555555555555552 32 45556
Q ss_pred CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
++|+.|++++|++++..| +..+++|++|++++|+++.+|
T Consensus 353 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred CCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCc
Confidence 666666666666655222 455666666666666665544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=5.6e-15 Score=130.09 Aligned_cols=123 Identities=23% Similarity=0.204 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 153 (228)
.++.|++++|.+.. ++ . +..+++|++|++++|.++.. |.. ++.+++|++|+|++|.+++ +| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LC-H-LEQLLLVTHLDLSHNRLRAL-PPA----LAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS-----CC-C-GGGGTTCCEEECCSSCCCCC-CGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCC-----Cc-C-ccccccCcEeecCccccccc-chh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 47789999999954 22 2 78999999999999999954 444 8999999999999999996 56 79999
Q ss_pred CCCCEEeccCccccCcc-ChhhhcCCCCCCEEEcccCCCCCCCCh--hhhcCCCCCcEEEC
Q 027116 154 SSLKHLSLFHNRLNGSV-DIKELDSLSNLEELDMSDNAINNPVIP--KDYRGLRKLNTLHL 211 (228)
Q Consensus 154 ~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L 211 (228)
++|++|+|++|.+++.. |. .++.+++|+.|++++|.+++..+. ..+..+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999544 66 899999999999999999983322 13445899999875
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=6e-15 Score=129.76 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=69.2
Q ss_pred eeeeE-EECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC
Q 027116 62 QWERV-ECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN 140 (228)
Q Consensus 62 ~~~gv-~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n 140 (228)
.|.++ .|.. ++++.|++++|++...+ ... +++|++|++++|.++..+ . .+++|++|++++|
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp-----~~l---~~~L~~L~Ls~N~l~~ip-~-------~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSSLP-----DNL---PPQITVLEITQNALISLP-E-------LPASLEYLDACDN 110 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSCCC-----SCC---CTTCSEEECCSSCCSCCC-C-------CCTTCCEEECCSS
T ss_pred hhhhcccccc--CCccEEEeCCCCCCccC-----HhH---cCCCCEEECcCCCCcccc-c-------ccCCCCEEEccCC
Confidence 67777 5642 46777888877774322 111 245566666666555322 1 1344444444444
Q ss_pred ccCcccccccC------------------CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcC
Q 027116 141 WFNNSIFSSLG------------------GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG 202 (228)
Q Consensus 141 ~l~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 202 (228)
.+++ +|. +. .+++|++|++++|.++ .+|. .+++|+.|++++|++++ +|. +.
T Consensus 111 ~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~--l~- 179 (571)
T 3cvr_A 111 RLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE--LP- 179 (571)
T ss_dssp CCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC--CC-
T ss_pred CCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch--hh-
Confidence 4443 332 22 3455555555555555 2442 34556666666666655 444 32
Q ss_pred CCCCcEEECCCCcCCcccC
Q 027116 203 LRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 203 l~~L~~L~L~~N~i~~i~~ 221 (228)
++|++|++++|+|+.+|.
T Consensus 180 -~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC
T ss_pred -CCCCEEECcCCCCCchhh
Confidence 566666666666666654
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=2.6e-14 Score=122.89 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=48.0
Q ss_pred cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK 205 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~ 205 (228)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++++ + . .+..+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~ 354 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-IS--PVSSLTKLQRLFFYNNKVSD-V-S-SLANLTN 354 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CG--GGGGCTTCCEEECCSSCCCC-C-G-GGTTCTT
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-ch--hhccCccCCEeECCCCccCC-c-h-hhccCCC
Confidence 3444555555555555543322 4455555555555555553 22 24555666666666666665 2 2 4566667
Q ss_pred CcEEECCCCcCCcccC
Q 027116 206 LNTLHLGGTEIAMIDG 221 (228)
Q Consensus 206 L~~L~L~~N~i~~i~~ 221 (228)
|++|++++|+++.+++
T Consensus 355 L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP 370 (466)
T ss_dssp CCEEECCSSCCCBCGG
T ss_pred CCEEeCCCCccCccch
Confidence 7777777776665543
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=1.5e-13 Score=118.07 Aligned_cols=124 Identities=21% Similarity=0.166 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 152 (228)
.+++.|++++|.+... .++.+++|++|++++|.+++. + +..+++|++|++++|.+++. | +..
T Consensus 64 ~~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l-~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKL-D--VSQ 125 (457)
T ss_dssp TTCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCee-c--CCC
Confidence 3455566666655321 145566666666666666553 1 55566666666666666642 2 566
Q ss_pred CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
+++|++|++++|.+++ ++ ++.+++|+.|++++|...+.+ .+..+++|++|++++|+++.++.
T Consensus 126 l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~l 187 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELDV 187 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCCC
T ss_pred CCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceecc
Confidence 6666666666666663 32 556666667777666443323 35677888888888888888763
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=1.3e-15 Score=137.92 Aligned_cols=112 Identities=25% Similarity=0.382 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
...++.|+|++|.+.. ++.. +..+++|++|+|++|.++. +|.. +..+++|++|+|++|.|+ .+|..+.
T Consensus 223 l~~L~~L~Ls~n~l~~-----l~~~-~~~l~~L~~L~Ls~N~l~~-lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN-----ISAN-IFKYDFLTRLYLNGNSLTE-LPAE----IKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp CCCCCEEECTTSCCSC-----CCGG-GGGCCSCSCCBCTTSCCSC-CCGG----GGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred CCCCcEEECCCCCCCC-----CChh-hcCCCCCCEEEeeCCcCcc-cChh----hhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 4678999999999853 2233 4489999999999999994 4444 889999999999999999 7799999
Q ss_pred CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh
Q 027116 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP 197 (228)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~ 197 (228)
.+++|++|+|++|.++ .+|. .++.+++|+.|+|++|.+++.+|.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChH
Confidence 9999999999999997 8998 699999999999999999985554
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.8e-13 Score=120.41 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE 182 (228)
Q Consensus 103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 182 (228)
+|++|++++|.+++.++ .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~ 183 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLE 183 (571)
T ss_dssp TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCC
T ss_pred CCCEEECCCCcCCCCCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCC
Confidence 66666666666665222 46789999999999986 554 57899999999999984 885 44 8999
Q ss_pred EEEcccCCCCCCCChhhhcCCCCC-------cEEECCCCcCCcccCCccc
Q 027116 183 ELDMSDNAINNPVIPKDYRGLRKL-------NTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 183 ~L~L~~N~l~~~~p~~~~~~l~~L-------~~L~L~~N~i~~i~~~~~~ 225 (228)
.|++++|+|+. +|. +.. +| +.|++++|+|+.||...+.
T Consensus 184 ~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~ 228 (571)
T 3cvr_A 184 ALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS 228 (571)
T ss_dssp EEECCSSCCSS-CCC--CC----------CCEEEECCSSCCCCCCGGGGG
T ss_pred EEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCCcceecCHHHhc
Confidence 99999999996 776 333 66 9999999999999875543
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=3e-14 Score=118.24 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCE-EeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc---
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLES-LDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF--- 147 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--- 147 (228)
..+++.|++++|.+.+ . ++...|..++++++ +.++.|+++...+.. |..+++|++|++++|.++...+
T Consensus 53 l~~L~~L~Ls~N~i~~--~--i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLE--V--IEADVFSNLPKLHEIRIEKANNLLYINPEA----FQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp CTTCCEEEEECCTTCC--E--ECTTSBCSCTTCCEEEEEEETTCCEECTTS----BCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CCCCCEEECcCCCCCC--c--cChhHhhcchhhhhhhcccCCcccccCchh----hhhccccccccccccccccCCchhh
Confidence 4678999999998732 1 33445566666554 444556666655554 5666666666666666543222
Q ss_pred ----------------------cccCCC-CCCCEEeccCccccCccChhhhcCCCCCCEEEccc-CCCCCCCChhhhcCC
Q 027116 148 ----------------------SSLGGL-SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKDYRGL 203 (228)
Q Consensus 148 ----------------------~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l 203 (228)
..+..+ ..+++|++++|+++ .++. ......+|+.+++++ |.++. +|.+.|..+
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l 201 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEE-LPNDVFHGA 201 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCCC-CCTTTTTTE
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh-hhccccchhHHhhccCCcccC-CCHHHhccC
Confidence 233333 35778888899887 6776 445567788898875 56665 787678999
Q ss_pred CCCcEEECCCCcCCcccCCcc
Q 027116 204 RKLNTLHLGGTEIAMIDGSKV 224 (228)
Q Consensus 204 ~~L~~L~L~~N~i~~i~~~~~ 224 (228)
++|++|++++|+|+.+|...+
T Consensus 202 ~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECCSEEECTTSCCCCCCSSSC
T ss_pred cccchhhcCCCCcCccChhhh
Confidence 999999999999999988755
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=3.5e-13 Score=115.77 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccc---------------ccccCCCCCCcEEE
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKG---------------LDRLSRLNNLKFLH 136 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~---------------~~~l~~l~~L~~L~ 136 (228)
...++.|++++|.+... .+..+++|++|++++|++++..-... .-.+..+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~l--------~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL--------DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC--------CCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee--------cCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 45678888888877431 15666777777777777665310000 00144556666666
Q ss_pred CCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 137 LDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 137 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
+++|++++ +| +..+++|++|++++|.+++ + .++.+++|+.|++++|++++ +| +..+++|++|++++|++
T Consensus 177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred CCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence 66666664 22 5666667777777776663 3 35667777777777777777 55 56677777888888777
Q ss_pred CcccCCc
Q 027116 217 AMIDGSK 223 (228)
Q Consensus 217 ~~i~~~~ 223 (228)
+.++...
T Consensus 246 ~~~~~~~ 252 (457)
T 3bz5_A 246 TELDVST 252 (457)
T ss_dssp SCCCCTT
T ss_pred CCcCHHH
Confidence 7766543
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=2.3e-15 Score=123.78 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc-cCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC-VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 151 (228)
..++.+++++|.+.... + .+..+++|++|++++|.+++. .+.. +..+++|++|++++|.+++..+..+.
T Consensus 70 ~~l~~L~l~~n~l~~~~-----~-~~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPL-----A-EHFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSCC-----C-SCCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred ccceEEEcCCccccccc-----h-hhccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 45666777777663321 1 245678899999999988754 4433 77888999999999988888888888
Q ss_pred CCCCCCEEeccCc-cccCc-cChhhhcCCCCCCEEEcccC-CCCCC-CChhhhcCCC-CCcEEECCCCc
Q 027116 152 GLSSLKHLSLFHN-RLNGS-VDIKELDSLSNLEELDMSDN-AINNP-VIPKDYRGLR-KLNTLHLGGTE 215 (228)
Q Consensus 152 ~l~~L~~L~Ls~n-~l~~~-~p~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~N~ 215 (228)
.+++|++|++++| .+++. ++. .+..+++|+.|++++| .+++. ++. .+..++ +|++|++++|.
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCG
T ss_pred cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCc
Confidence 8999999999998 67642 444 6788889999999999 88763 344 677888 99999999984
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=4e-15 Score=124.92 Aligned_cols=141 Identities=20% Similarity=0.157 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc-----cCcccccccCCCCCCcEEECCCCccC----
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC-----VENKGLDRLSRLNNLKFLHLDFNWFN---- 143 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-----~~~~~~~~l~~l~~L~~L~Ls~n~l~---- 143 (228)
..++.|++++|++...+.. .....+..+++|++|++++|.++.. .+.. +..+++|++|+|++|.++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~----l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----LAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----GGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----hhcCCCccEEECcCCCCCcHHH
Confidence 3566666666665322210 0012345667777777777777621 2211 667788888888888875
Q ss_pred cccccccCCCCCCCEEeccCccccCc----cChhhh--cCCCCCCEEEcccCCCCC----CCChhhh-cCCCCCcEEECC
Q 027116 144 NSIFSSLGGLSSLKHLSLFHNRLNGS----VDIKEL--DSLSNLEELDMSDNAINN----PVIPKDY-RGLRKLNTLHLG 212 (228)
Q Consensus 144 ~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~~-~~l~~L~~L~L~ 212 (228)
..+|..+..+++|++|++++|.+++. ++. .+ +.+++|+.|++++|.+++ .+|. .+ .++++|++|+++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECT
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEcc
Confidence 45666777788888888888887643 333 44 337888888888888876 3555 44 567888888888
Q ss_pred CCcCCccc
Q 027116 213 GTEIAMID 220 (228)
Q Consensus 213 ~N~i~~i~ 220 (228)
+|+++...
T Consensus 312 ~N~l~~~~ 319 (386)
T 2ca6_A 312 GNRFSEED 319 (386)
T ss_dssp TSBSCTTS
T ss_pred CCcCCcch
Confidence 88887544
No 123
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=1.6e-13 Score=113.55 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=87.2
Q ss_pred EEEcCCC-CcccccccccCcccccCCCCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCC
Q 027116 77 KLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154 (228)
Q Consensus 77 ~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 154 (228)
.++++++ ++.. ++. +..+++|++|+|++ |.+++.++.. |..+++|++|+|++|+|++..|..|..++
T Consensus 12 ~v~~~~~n~l~~-----ip~--l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH--LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTT-----TTT--SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCc-----cCC--CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4588887 7743 333 78888999999996 9999887766 88999999999999999988888899999
Q ss_pred CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
+|++|+|++|+++ .+|...+..++ |+.|+|.+|.+..
T Consensus 81 ~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999999999998 57764566555 9999999999886
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=2.7e-15 Score=123.33 Aligned_cols=132 Identities=23% Similarity=0.256 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCcc-ccccc
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNS-IFSSL 150 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~ 150 (228)
.+++.|++++|.+...+. +..+..+++|++|++++|.+++..+.. +..+++|++|++++| .+++. ++..+
T Consensus 93 ~~L~~L~L~~~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp BCCCEEECTTCEECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHH----HHHHhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 457777777776632111 223455666666666666655443333 445555555555555 44432 33334
Q ss_pred CCCCCCCEEeccCc-cccC-----------------------------ccChhhhcCCCCCCEEEcccCC-CCCCCChhh
Q 027116 151 GGLSSLKHLSLFHN-RLNG-----------------------------SVDIKELDSLSNLEELDMSDNA-INNPVIPKD 199 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n-~l~~-----------------------------~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~ 199 (228)
..+++|++|++++| .+++ .++. .+..+++|+.|++++|. +++..+. .
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~ 242 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQ-E 242 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGG-G
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHH-H
Confidence 44455555555555 4432 2222 33445555555555555 4433333 4
Q ss_pred hcCCCCCcEEECCCC
Q 027116 200 YRGLRKLNTLHLGGT 214 (228)
Q Consensus 200 ~~~l~~L~~L~L~~N 214 (228)
+..+++|++|++++|
T Consensus 243 l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 243 FFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HhCCCCCCEeeCCCC
Confidence 455555555555555
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=3.6e-13 Score=115.61 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=53.1
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 177 (228)
++.+++|++|++++|++++.+. . ..+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|. .
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~-~-------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~-~--- 213 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPD-L-------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD-L--- 213 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCC-C-------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC-C---
T ss_pred cCCCCCCCEEECCCCcCcccCC-C-------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC-C---
Confidence 5556666666666666655221 1 2355555555555553 33 35555555555555555542 332 1
Q ss_pred CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
.++|+.|++++|.++. +|. +..+++|++|++++|+++.+|
T Consensus 214 ~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 214 PLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred cCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCcCCccc
Confidence 1344555555554443 442 445555555555555555544
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=8.4e-15 Score=122.07 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=84.5
Q ss_pred cEEEEEcCCCCcccccccccCcccccC-CCCCCEEeCCCCCcccccCcccccccCCC-CCCcEEECCCCccCccccccc-
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTP-FQQLESLDLTWNSIAGCVENKGLDRLSRL-NNLKFLHLDFNWFNNSIFSSL- 150 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~- 150 (228)
+++.|++++|.+...+...+. ..+.. .++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 577777777776543321111 11122 26777777777777665544322223444 677777777777765554432
Q ss_pred ---CC-CCCCCEEeccCccccCc----cChhhhcCCC-CCCEEEcccCCCCCCCCh---hhhcCC-CCCcEEECCCCcCC
Q 027116 151 ---GG-LSSLKHLSLFHNRLNGS----VDIKELDSLS-NLEELDMSDNAINNPVIP---KDYRGL-RKLNTLHLGGTEIA 217 (228)
Q Consensus 151 ---~~-l~~L~~L~Ls~n~l~~~----~p~~~~~~l~-~L~~L~L~~N~l~~~~p~---~~~~~l-~~L~~L~L~~N~i~ 217 (228)
.. .++|++|++++|.+++. ++. .+...+ +|++|++++|.+++..+. ..+... ++|++|++++|+|+
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33 24778888888877632 222 334454 788888888887763332 123344 47888888888877
Q ss_pred c
Q 027116 218 M 218 (228)
Q Consensus 218 ~ 218 (228)
.
T Consensus 210 ~ 210 (362)
T 3goz_A 210 L 210 (362)
T ss_dssp G
T ss_pred h
Confidence 6
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=3.1e-13 Score=111.74 Aligned_cols=103 Identities=24% Similarity=0.325 Sum_probs=58.0
Q ss_pred EEeCCCC-CcccccCcccccccCCCCCCcEEECCC-CccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116 106 SLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDF-NWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183 (228)
Q Consensus 106 ~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 183 (228)
.++++++ .++..+. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++ +++..|..+++|+.
T Consensus 12 ~v~~~~~n~l~~ip~------l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC------CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCE
Confidence 3455555 5554322 45555666666664 66665555556666666666666666653 33335566666666
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116 184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~ 217 (228)
|+|++|+|++ +|...+..++ |+.|+|++|++.
T Consensus 85 L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 85 LNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred EeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666665 4442444443 666666666654
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=6.3e-15 Score=123.71 Aligned_cols=115 Identities=23% Similarity=0.233 Sum_probs=77.8
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-----ccccccCCCCCCCEEeccCcccc----CccCh
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-----SIFSSLGGLSSLKHLSLFHNRLN----GSVDI 172 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~ 172 (228)
++|++|++++|.++..........+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 6666777777766522111111125567788888888887762 23336777888888888888885 34665
Q ss_pred hhhcCCCCCCEEEcccCCCCCC----CChhhh--cCCCCCcEEECCCCcCCc
Q 027116 173 KELDSLSNLEELDMSDNAINNP----VIPKDY--RGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~N~l~~~----~p~~~~--~~l~~L~~L~L~~N~i~~ 218 (228)
.+..+++|+.|+|++|.+++. ++. .+ ..+++|++|++++|+|+.
T Consensus 239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp -HGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBH
T ss_pred -HHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCH
Confidence 677888888888888888763 233 45 337888888888888877
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.4e-14 Score=120.64 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=104.1
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCC-CCCCEEeCCCCCcccccCcccccccCC-CCCCcEEECCCCccCcccc---
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPF-QQLESLDLTWNSIAGCVENKGLDRLSR-LNNLKFLHLDFNWFNNSIF--- 147 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~--- 147 (228)
..++.|++++|.+...+...+ ...+..+ ++|++|++++|.+++..+......+.. .++|++|++++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDEL-VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHH-HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 678999999999865443211 1224445 799999999999987665443333455 3699999999999985433
Q ss_pred -cccCCCC-CCCEEeccCccccCccCh---hhhcCC-CCCCEEEcccCCCCCC----CChhhhcC-CCCCcEEECCCCcC
Q 027116 148 -SSLGGLS-SLKHLSLFHNRLNGSVDI---KELDSL-SNLEELDMSDNAINNP----VIPKDYRG-LRKLNTLHLGGTEI 216 (228)
Q Consensus 148 -~~~~~l~-~L~~L~Ls~n~l~~~~p~---~~~~~l-~~L~~L~L~~N~l~~~----~p~~~~~~-l~~L~~L~L~~N~i 216 (228)
..+..++ +|++|++++|.+++..+. ..+..+ ++|+.|++++|.+++. ++. .+.. .++|++|++++|+|
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCC
Confidence 3445555 899999999999843332 134455 5999999999999873 233 3444 45999999999999
Q ss_pred CcccC
Q 027116 217 AMIDG 221 (228)
Q Consensus 217 ~~i~~ 221 (228)
+.++.
T Consensus 238 ~~~~~ 242 (362)
T 3goz_A 238 HGPSL 242 (362)
T ss_dssp CCCCH
T ss_pred CcHHH
Confidence 88654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.5e-16 Score=121.84 Aligned_cols=109 Identities=28% Similarity=0.343 Sum_probs=51.0
Q ss_pred ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 177 (228)
+..+++|++|++++|.+++.+ . +..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+| .+..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~--~~~~ 113 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEK 113 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH--HHHH
T ss_pred HhcCCCCCEEECCCCCCcccc--c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC--cccc
Confidence 344455555555555554422 1 444455555555555554 33333334445555555555554 233 3444
Q ss_pred CCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCC
Q 027116 178 LSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIA 217 (228)
Q Consensus 178 l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~ 217 (228)
+++|+.|++++|.+++ ++. ..+..+++|++|++++|+++
T Consensus 114 l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence 4555555555555544 221 23444555555555555443
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=6.1e-13 Score=118.21 Aligned_cols=80 Identities=25% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116 130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209 (228)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L 209 (228)
++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++. +|. .+.++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTR-LPE-SLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCS-CCG-GGGGSCTTCEE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCc-CCH-HHhhccccCEE
Confidence 556666666666664 33 34567777777777776 5663 56778888888888885 777 78888888888
Q ss_pred ECCCCcCCccc
Q 027116 210 HLGGTEIAMID 220 (228)
Q Consensus 210 ~L~~N~i~~i~ 220 (228)
++++|+++...
T Consensus 290 ~L~~N~l~~~~ 300 (622)
T 3g06_A 290 NLEGNPLSERT 300 (622)
T ss_dssp ECCSCCCCHHH
T ss_pred EecCCCCCCcC
Confidence 88888887654
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=1.4e-12 Score=111.85 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL 181 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 181 (228)
++|++|++++|++++. |. +..+++|++|++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|
T Consensus 131 ~~L~~L~L~~n~l~~l-p~-----~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKL-PE-----LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSSC-CC-----CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred CCCCEEECcCCCCCCC-cc-----cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence 4667777777776653 32 6677777777777777764 3432 2467777777777763 55 46777777
Q ss_pred CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116 182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220 (228)
Q Consensus 182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~ 220 (228)
+.|++++|.+++ +|. . .++|++|++++|+++.+|
T Consensus 198 ~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPD-L---PLSLESIVAGNNILEELP 231 (454)
T ss_dssp CEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCSSCC
T ss_pred CEEECCCCcCCc-CCC-C---cCcccEEECcCCcCCccc
Confidence 777777777776 554 2 247777777777777766
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.1e-13 Score=122.96 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=57.4
Q ss_pred CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN 180 (228)
Q Consensus 101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 180 (228)
+++|++|++++|+++..+. .+++|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred CCCCCEEEcCCCcCCcCCC--------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCC
Confidence 4556666666665554222 34566666666666653 222 3456666666666666 4553 2367
Q ss_pred CCEEEcccCCCCCCCChhhhcC---C--------------CCCcEEECCCCcCCcccC
Q 027116 181 LEELDMSDNAINNPVIPKDYRG---L--------------RKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 181 L~~L~L~~N~l~~~~p~~~~~~---l--------------~~L~~L~L~~N~i~~i~~ 221 (228)
|++|++++|.+++ +|. .+.+ + ++|+.|++++|+|+.++.
T Consensus 143 L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 143 LQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp CCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC
Confidence 7777777777776 443 2211 1 555666666666665554
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=2.1e-14 Score=122.91 Aligned_cols=120 Identities=20% Similarity=0.131 Sum_probs=75.1
Q ss_pred ccCCCCCCEEeCCCCCcccccCccccccc-CCCCCCcEEECCCCccCcc----cccccCCCCCCCEEeccCccccCccCh
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNS----IFSSLGGLSSLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 172 (228)
+..+++|++|++++|.+++.........+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 34455666666666655443222111111 1235677777777777654 344556668888888888887643222
Q ss_pred hhhc-----CCCCCCEEEcccCCCCC----CCChhhhcCCCCCcEEECCCCcCCcc
Q 027116 173 KELD-----SLSNLEELDMSDNAINN----PVIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 173 ~~~~-----~l~~L~~L~L~~N~l~~----~~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
.+. ..++|+.|++++|.+++ .++. .+..+++|++|++++|+|+..
T Consensus 360 -~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 360 -ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp -HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHH
T ss_pred -HHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCHH
Confidence 222 26788888888888874 4565 677788888888888888764
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=1.7e-14 Score=123.46 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=44.3
Q ss_pred cCCCCCCcEEECCCCccCcccccccC-----CCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116 126 LSRLNNLKFLHLDFNWFNNSIFSSLG-----GLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPVI 196 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~p 196 (228)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++. .+..+++|+.|++++|.+++..+
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccH
Confidence 33345555555555555432222221 124555555555555432 222 44455666666666666655222
Q ss_pred hhhhc-----CCCCCcEEECCCCcCC
Q 027116 197 PKDYR-----GLRKLNTLHLGGTEIA 217 (228)
Q Consensus 197 ~~~~~-----~l~~L~~L~L~~N~i~ 217 (228)
. .+. ..++|++|++++|+++
T Consensus 359 ~-~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 359 R-ELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp H-HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred H-HHHHHHcCCCCceEEEECCCCCCC
Confidence 2 222 1456667777776666
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=3.8e-12 Score=104.62 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC-EEEcccCCCCCCCChhhhcCCCCCc
Q 027116 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE-ELDMSDNAINNPVIPKDYRGLRKLN 207 (228)
Q Consensus 129 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~l~~L~ 207 (228)
+++|+.+++++|.++...+..|.++.+|+++++..| ++ .++...|.++++|+ .+++.+ .++. ++...|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence 679999999999998666668999999999999998 76 68888999999999 999988 7776 6666999999999
Q ss_pred EEECCCCcCCcccCCccc
Q 027116 208 TLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 208 ~L~L~~N~i~~i~~~~~~ 225 (228)
.+++++|+++.|+..+|.
T Consensus 301 ~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFG 318 (329)
T ss_dssp EEEECSSCCCEECTTTTC
T ss_pred EEEeCCCccCccchhhhc
Confidence 999999999999998875
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=7.3e-14 Score=116.96 Aligned_cols=142 Identities=24% Similarity=0.269 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc-CCCCCCcEEECCCCccCcc----cc
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNS----IF 147 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~~ 147 (228)
..++.|+|++|.+...+.. .....+++|++|++++|.++..........+ ...++|++|+|++|.++.. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 5799999999988654432 1223456889999999998765443322222 3578899999999999753 33
Q ss_pred cccCCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCC----CChhhhcCCCCCcEEECCCCcCCcc
Q 027116 148 SSLGGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNP----VIPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 148 ~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
..+...++|++|+|++|.+++. ++. .+...++|+.|+|++|.|++. +.. .+...++|++|+|++|+|+..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHH
Confidence 4457788999999999999732 233 567778999999999999862 222 455678999999999999865
Q ss_pred c
Q 027116 220 D 220 (228)
Q Consensus 220 ~ 220 (228)
.
T Consensus 255 g 255 (372)
T 3un9_A 255 G 255 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=3.6e-12 Score=104.73 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=103.6
Q ss_pred CcEEEEEcCCCCccc--cc-----c--------cccCcccccC--------CCCCCEEeCCCCCcccccCcccccccCCC
Q 027116 73 GRVIKLDLAQIRKWE--SA-----E--------WYMNASLFTP--------FQQLESLDLTWNSIAGCVENKGLDRLSRL 129 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~--~~-----~--------~~~~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 129 (228)
.+++.|||++|++.. .. . ..++...|.. +++|+.+++.+ .++...+.+ |.++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a----F~~~ 123 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA----FKGC 123 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT----TTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHH----hhcC
Confidence 457778888777751 00 0 0244556777 88888888888 777766655 7888
Q ss_pred CCCcEEECCCCccCcccccccC----------------------------------------------------------
Q 027116 130 NNLKFLHLDFNWFNNSIFSSLG---------------------------------------------------------- 151 (228)
Q Consensus 130 ~~L~~L~Ls~n~l~~~~~~~~~---------------------------------------------------------- 151 (228)
++|+.+++++|.+....+..|.
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 8888888888765322111111
Q ss_pred --------------------CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc-EEE
Q 027116 152 --------------------GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN-TLH 210 (228)
Q Consensus 152 --------------------~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~-~L~ 210 (228)
.+++|+++++++|+++ .+|...|.++++|+.+++.+| ++. ++...|.++++|+ .++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEE
Confidence 1678889999988887 788878888999999999888 666 6766888999998 999
Q ss_pred CCCCcCCcccCCccc
Q 027116 211 LGGTEIAMIDGSKVL 225 (228)
Q Consensus 211 L~~N~i~~i~~~~~~ 225 (228)
+.+ .++.|+..+|.
T Consensus 281 l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFM 294 (329)
T ss_dssp ECT-TCCEECTTTTT
T ss_pred Ecc-cceEEchhhhh
Confidence 988 88888887774
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=6.2e-15 Score=112.70 Aligned_cols=117 Identities=25% Similarity=0.234 Sum_probs=96.1
Q ss_pred ccCCCCCCEEeCCCCCcccccCcc--cccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 98 FTPFQQLESLDLTWNSIAGCVENK--GLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 98 ~~~l~~L~~L~ls~n~l~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
+.....++.++++.+.+.+..+.. ....+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 445567777777777777765540 01127889999999999999986 56 7889999999999999998 7886 77
Q ss_pred cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
..+++|+.|++++|.+++ +| .+..+++|++|++++|+|+.++.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhH
Confidence 778999999999999998 54 57888999999999999998764
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=9.8e-14 Score=116.18 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=104.6
Q ss_pred CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc--
Q 027116 73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-- 150 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-- 150 (228)
..++.|++++|.+...+...+........++|++|++++|.++....... ...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46889999999986544322221111234799999999999976443332 2345689999999999986554444
Q ss_pred ---CCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCC----ChhhhcCCCCCcEEECCCCcCCcc
Q 027116 151 ---GGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPV----IPKDYRGLRKLNTLHLGGTEIAMI 219 (228)
Q Consensus 151 ---~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~~l~~L~~L~L~~N~i~~i 219 (228)
...++|++|+|++|.+++. ++. .+..+++|++|+|++|.|++.. .. .+...++|+.|+|++|.|+..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence 3568999999999999732 332 4578899999999999998621 23 567778999999999999875
Q ss_pred c
Q 027116 220 D 220 (228)
Q Consensus 220 ~ 220 (228)
.
T Consensus 227 g 227 (372)
T 3un9_A 227 A 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=4.6e-11 Score=90.26 Aligned_cols=121 Identities=19% Similarity=0.092 Sum_probs=85.5
Q ss_pred cccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCccc----ccccCCCCCCCEEeccCccccCc--
Q 027116 97 LFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGS-- 169 (228)
Q Consensus 97 ~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~-- 169 (228)
.+...+.|++|++++| .+...........+...++|++|+|++|.+.... ...+...++|++|+|++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566788888888888 8875433333334677788899999999886532 33445567899999999988732
Q ss_pred --cChhhhcCCCCCCEEEc--ccCCCCCCCCh---hhhcCCCCCcEEECCCCcCCc
Q 027116 170 --VDIKELDSLSNLEELDM--SDNAINNPVIP---KDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 170 --~p~~~~~~l~~L~~L~L--~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i~~ 218 (228)
+.. .+...++|++|+| ++|.|.+.... ..+...++|++|++++|.|..
T Consensus 111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 233 5667788999999 78888763211 145566889999999998764
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=2.3e-11 Score=107.07 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCCCCEEeCC----CCCcccccCccc-ccccCCCCCCcEEECCCC--ccCcccccccC-CCCCCCEEeccCccccCccCh
Q 027116 101 FQQLESLDLT----WNSIAGCVENKG-LDRLSRLNNLKFLHLDFN--WFNNSIFSSLG-GLSSLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 101 l~~L~~L~ls----~n~l~~~~~~~~-~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~ 172 (228)
+++|++|+++ .|.+++.+.+.. ...+.++++|++|+++++ .+++..+..+. .+++|++|++++|++++....
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5666666664 455554321100 001345777888887643 35554444443 378899999999988753222
Q ss_pred hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116 173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~ 221 (228)
..+..+++|+.|++++|.+++.........+++|++|++++|+++....
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 2567889999999999998754333245678899999999999886543
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.97 E-value=3e-11 Score=96.26 Aligned_cols=81 Identities=27% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCCCCCcEEECCCCccCc--ccccccCCCCCCCEEeccCccccCccChhhhcCCC--CCCEEEcccCCCCCCCCh-----
Q 027116 127 SRLNNLKFLHLDFNWFNN--SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS--NLEELDMSDNAINNPVIP----- 197 (228)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~N~l~~~~p~----- 197 (228)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|.+++ +. .+..+. +|+.|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457899999999999987 344556688999999999999984 32 333333 899999999999876652
Q ss_pred -hhhcCCCCCcEEE
Q 027116 198 -KDYRGLRKLNTLH 210 (228)
Q Consensus 198 -~~~~~l~~L~~L~ 210 (228)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2467889998887
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=1.7e-10 Score=87.17 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=91.3
Q ss_pred CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116 72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I 146 (228)
Q Consensus 72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~ 146 (228)
...+++|+|++| .+...|...+ ...+...++|++|++++|.+...........+...++|++|+|++|.|+.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 467999999999 8876554332 234566789999999999998654433333366678999999999999864 3
Q ss_pred ccccCCCCCCCEEec--cCccccCc----cChhhhcCCCCCCEEEcccCCCCC
Q 027116 147 FSSLGGLSSLKHLSL--FHNRLNGS----VDIKELDSLSNLEELDMSDNAINN 193 (228)
Q Consensus 147 ~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~ 193 (228)
...+...++|++|++ ++|.++.. +.. .+...++|+.|++++|.+..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCCh
Confidence 456777889999999 88999743 222 56667899999999998754
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.88 E-value=7.5e-10 Score=97.42 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=51.1
Q ss_pred EEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc----cccccc
Q 027116 75 VIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN----SIFSSL 150 (228)
Q Consensus 75 v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~ 150 (228)
++.|+++++.- .....+ ......+++|++|++++|.+++.........+..+++|++|++++|.+++ .++..+
T Consensus 140 L~~L~L~~~~~--~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 140 LETLKLDKCSG--FTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp CCEEEEESCEE--EEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred CcEEECcCCCC--cCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 66777766541 110000 11223566666777776665443211100113345666666666666652 223333
Q ss_pred CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcc
Q 027116 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMS 187 (228)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 187 (228)
..+++|++|++++|.+.+ ++. .+..+++|+.|+++
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEEC
T ss_pred hhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhccc
Confidence 455666666666665542 332 34444444444443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=2.8e-08 Score=83.83 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=72.2
Q ss_pred cCCCCCCcEEECCCCccC-----cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhh
Q 027116 126 LSRLNNLKFLHLDFNWFN-----NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY 200 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 200 (228)
|.++++|+.+++.+|.+. ...+..|.++++|+.+++. +.++ .++...|.++++|+.+.+..| ++. +....|
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~-I~~~aF 342 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQ-INFSAF 342 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCE-ECTTSS
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccE-EcHHhC
Confidence 778888888888877664 3444578888888888888 4466 677778888888888888555 665 555578
Q ss_pred cCCCCCcEEECCCCcCCcccCCccc
Q 027116 201 RGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 201 ~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
.++ +|+.+++++|.+..++..+|.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred CCC-CCCEEEEcCCCCccccccccc
Confidence 888 899999999888887776653
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=4.4e-08 Score=82.65 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=13.3
Q ss_pred cccccCCCCCCEEeCCCCCcccc
Q 027116 95 ASLFTPFQQLESLDLTWNSIAGC 117 (228)
Q Consensus 95 ~~~~~~l~~L~~L~ls~n~l~~~ 117 (228)
...|..+++|+.++++.|.++..
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSEE
T ss_pred HHHhhCcccCCeeecCCCcceEe
Confidence 34566666666666666555443
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=2.2e-10 Score=100.82 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCCCCEEeCC--C----CCcccccCccc-ccccCCCCCCcEEECCCCccCcccccccCC-CCCCCEEeccCccccCccC
Q 027116 100 PFQQLESLDLT--W----NSIAGCVENKG-LDRLSRLNNLKFLHLDFNWFNNSIFSSLGG-LSSLKHLSLFHNRLNGSVD 171 (228)
Q Consensus 100 ~l~~L~~L~ls--~----n~l~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p 171 (228)
.+++|++|+++ + +.++..+.... ...+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 46777777777 3 44442211110 00134567888888876 666555555544 7888999999888875433
Q ss_pred hhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116 172 IKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218 (228)
Q Consensus 172 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~ 218 (228)
......+++|+.|++++|.+++.........+++|++|++++|+++.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 32236688899999999988653333234557889999999988743
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=1.9e-08 Score=80.06 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=64.4
Q ss_pred cCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCcc-cccccCCCCCCCEEeccCccccCccCh---
Q 027116 99 TPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSLGGLSSLKHLSLFHNRLNGSVDI--- 172 (228)
Q Consensus 99 ~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~--- 172 (228)
..+++|+.|+|++|.+++.. +.. +..+++|+.|+|++|++++. ....+..+ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 45789999999999999854 232 55799999999999999865 11234444 999999999999876662
Q ss_pred ---hhhcCCCCCCEEE
Q 027116 173 ---KELDSLSNLEELD 185 (228)
Q Consensus 173 ---~~~~~l~~L~~L~ 185 (228)
..+..+|+|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 2477899999886
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.58 E-value=2e-08 Score=88.29 Aligned_cols=14 Identities=7% Similarity=0.015 Sum_probs=8.6
Q ss_pred CcEEEEEcCCCCcc
Q 027116 73 GRVIKLDLAQIRKW 86 (228)
Q Consensus 73 ~~v~~L~l~~n~l~ 86 (228)
.+++.|+++++.+.
T Consensus 105 ~~L~~L~L~~~~~~ 118 (594)
T 2p1m_B 105 TWLEEIRLKRMVVT 118 (594)
T ss_dssp TTCCEEEEESCBCC
T ss_pred CCCCeEEeeCcEEc
Confidence 35666777666653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=2.2e-08 Score=83.25 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCC--CccCcc----
Q 027116 72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDF--NWFNNS---- 145 (228)
Q Consensus 72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~--n~l~~~---- 145 (228)
..+++.|+++++.- . .+.+ + .+++|++|++..+.++....... ....+++|+.|+|+. |...+.
T Consensus 171 ~P~L~~L~L~g~~~----l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l--~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 171 MPLLNNLKIKGTNN----L-SIGK--K-PRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CTTCCEEEEECCBT----C-BCCS--C-BCTTCSEEEEECSBCCHHHHHHH--HHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred CCCCcEEEEeCCCC----c-eecc--c-cCCCCcEEEEecCCCChHHHHHH--HHccCCCCcEEEEeccccccccchhHH
Confidence 34677777776621 0 1111 2 26778888887777654322210 013678888888753 222111
Q ss_pred -ccccc--CCCCCCCEEeccCccccCccChhhh---cCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEECCCCcC
Q 027116 146 -IFSSL--GGLSSLKHLSLFHNRLNGSVDIKEL---DSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 146 -~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L~~N~i 216 (228)
+...+ ..+++|++|++.+|.+.+..+. .+ ..+++|++|+|+.|.+.+..... .+..+++|+.|++++|.|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11122 2478899999988888643332 22 25678999999998887632221 234568899999999988
Q ss_pred Cc
Q 027116 217 AM 218 (228)
Q Consensus 217 ~~ 218 (228)
++
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.30 E-value=3.5e-06 Score=70.07 Aligned_cols=120 Identities=13% Similarity=0.226 Sum_probs=87.0
Q ss_pred ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
..|..+..|+.+.+..+ ++...... |.++..|+.+.+..+ +.......|.++.+|+.+.+..+.++ .++...|
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhh
Confidence 44556666777776554 44444433 777888888888654 44344456888899999999888887 6777788
Q ss_pred cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
.++.+|+.+.+..+ ++. +....|.++.+|+.+.+..+ ++.|...+|.
T Consensus 307 ~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp TTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred cCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 89999999998755 555 66658888999998888654 8888777764
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=1.7e-07 Score=69.73 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc-cCcccccccCCC----CCCCEEeccCcc-ccCccChhhh
Q 027116 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLGGL----SSLKHLSLFHNR-LNGSVDIKEL 175 (228)
Q Consensus 102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~p~~~~ 175 (228)
..|+.||++++.++...-.. +..+++|++|+|+++. +++..-..+..+ ++|++|++++|. +++.--. .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence 36788888888776543332 6778888888888874 665544455554 368888887774 6532112 55
Q ss_pred cCCCCCCEEEcccCC-CCC
Q 027116 176 DSLSNLEELDMSDNA-INN 193 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~-l~~ 193 (228)
..+++|+.|+++++. +++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 667788888887774 544
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=3.4e-07 Score=76.11 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCccccccccc----CcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc
Q 027116 73 GRVIKLDLAQIRKWESAEWYM----NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS 148 (228)
Q Consensus 73 ~~v~~L~l~~n~l~~~~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 148 (228)
.+++.|.+.++.........+ ....+..+++|+.|++++|.-.. .+. +. +++|++|++..+.++.....
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-----~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-----KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-----CB-CTTCSEEEEECSBCCHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-----cc-CCCCcEEEEecCCCChHHHH
Confidence 467778776653321100001 11345678999999998873111 111 32 78999999999888755444
Q ss_pred ccC--CCCCCCEEeccC--ccccCc-----cChhhh--cCCCCCCEEEcccCCCCCCCChhhh---cCCCCCcEEECCCC
Q 027116 149 SLG--GLSSLKHLSLFH--NRLNGS-----VDIKEL--DSLSNLEELDMSDNAINNPVIPKDY---RGLRKLNTLHLGGT 214 (228)
Q Consensus 149 ~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~~L~L~~N 214 (228)
.+. .+++|++|+|+. |...+. +.. .+ ..+++|++|++.+|.+.+..+. .+ ..+++|++|+|+.|
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSS
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCC
Confidence 443 789999999864 222111 111 22 3579999999999998763333 22 25789999999999
Q ss_pred cCCcc
Q 027116 215 EIAMI 219 (228)
Q Consensus 215 ~i~~i 219 (228)
.++..
T Consensus 290 ~L~d~ 294 (362)
T 2ra8_A 290 VLTDE 294 (362)
T ss_dssp CCBHH
T ss_pred CCChH
Confidence 99873
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=4e-07 Score=67.68 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCC-cccccCcccccccCCC----CCCcEEECCCCc-cCcccc
Q 027116 74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNS-IAGCVENKGLDRLSRL----NNLKFLHLDFNW-FNNSIF 147 (228)
Q Consensus 74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~ 147 (228)
++++||++++.++..|-. .+..+++|++|+|++|. +++..-.. +..+ ++|++|+|+++. ++...-
T Consensus 62 ~L~~LDLs~~~Itd~GL~-----~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-----HMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-----GGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCCccHHHHH-----HhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 455566665555443331 23455556666665553 43321111 3322 245566665543 554444
Q ss_pred cccCCCCCCCEEeccCcc
Q 027116 148 SSLGGLSSLKHLSLFHNR 165 (228)
Q Consensus 148 ~~~~~l~~L~~L~Ls~n~ 165 (228)
..+..+++|++|+++++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 445555566666665553
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.15 E-value=6.9e-07 Score=67.64 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=64.2
Q ss_pred cCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCccccc----ccCCCCCCCEEeccCccccCc----
Q 027116 99 TPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGLSSLKHLSLFHNRLNGS---- 169 (228)
Q Consensus 99 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~---- 169 (228)
..-+.|+.|++++| .|.......+.+.+..-+.|+.|+|++|.+...... .+..-+.|++|+|++|.|++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44456777777764 665433333333455666777777777777543222 233446677777777777522
Q ss_pred cChhhhcCCCCCCEEEcccCC---CCCC----CChhhhcCCCCCcEEECCCCcC
Q 027116 170 VDIKELDSLSNLEELDMSDNA---INNP----VIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 170 ~p~~~~~~l~~L~~L~L~~N~---l~~~----~p~~~~~~l~~L~~L~L~~N~i 216 (228)
+-. .+.....|+.|+|++|. +... +.. .+..-+.|+.|+++.|.+
T Consensus 118 la~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 212 44555667777776543 2221 111 344556777777766643
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=5.8e-07 Score=68.06 Aligned_cols=119 Identities=10% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116 72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I 146 (228)
Q Consensus 72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~ 146 (228)
...+++|+|+++ ++...|...+ ...+..-+.|+.|+|++|.|.......+.+.+..-+.|++|+|++|.|+.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 467999999986 8876565433 334567789999999999998766555555567788999999999999754 3
Q ss_pred ccccCCCCCCCEEeccCc---cccCc----cChhhhcCCCCCCEEEcccCCCC
Q 027116 147 FSSLGGLSSLKHLSLFHN---RLNGS----VDIKELDSLSNLEELDMSDNAIN 192 (228)
Q Consensus 147 ~~~~~~l~~L~~L~Ls~n---~l~~~----~p~~~~~~l~~L~~L~L~~N~l~ 192 (228)
.+.+..-..|++|+|++| .+... +.. .+...+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence 345666778999999875 34321 222 5667789999999877643
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=9.6e-05 Score=61.75 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=84.3
Q ss_pred cCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh
Q 027116 93 MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 93 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 172 (228)
+....|..+..|+.+.+..+-. ...... |.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++ .+..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~a----F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~ 327 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGA----FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD 327 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTT----TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred cccceeeecccccEEecccccc-eecCcc----cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence 3345678888899988876533 333333 78889999999864 455455567888999999999764 55 5766
Q ss_pred hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116 173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~ 215 (228)
..|.++.+|+.+.+..+ ++. +....|.++++|+.+++.+|.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCce
Confidence 68889999999999655 665 666689999999999998864
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.92 E-value=0.0001 Score=61.08 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=92.1
Q ss_pred ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116 96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175 (228)
Q Consensus 96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 175 (228)
..+.....|+.+.+..+ ++...... +..+..|+.+.+..+ ++......+..+.+|+.+.+..+ ++ .++...|
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~----f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF 282 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGA----FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC 282 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTT----TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred cccccccccceeeeccc-eeEEcccc----ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence 34555667777777554 33333333 788899999999776 55455567888999999998654 54 5777689
Q ss_pred cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
..+++|+.+.+.++.++. ++...|.++.+|+.+.+..+ ++.|+..+|.
T Consensus 283 ~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp TTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 999999999999998887 66669999999999999754 8889888874
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=8.8e-05 Score=61.99 Aligned_cols=112 Identities=12% Similarity=0.200 Sum_probs=80.5
Q ss_pred cCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh
Q 027116 93 MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI 172 (228)
Q Consensus 93 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 172 (228)
+....|..+..|+.+.+. +.++...... |.++.+|+.+++..+ ++......|.++.+|+.+.+..+ ++ .+..
T Consensus 279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~ 350 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFS-SRITELPESV----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE 350 (394)
T ss_dssp ECTTTTTTCTTCCEEECC-TTCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred ecCcccccccccccccCC-CcccccCcee----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence 445678889999999996 4566655555 999999999999865 55455568999999999999755 66 6887
Q ss_pred hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116 173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i 216 (228)
..|.++.+|+.+++.++.... . .+....+|+.+.+..|.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHHH---H-TCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence 799999999999998875431 2 566778898888877654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.00012 Score=61.14 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=59.1
Q ss_pred cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK 205 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~ 205 (228)
|..+.+|+.+.+.++ ++......|.++.+|+.+++..+ ++ .+....|.++.+|+.+++..+ ++. +....|.++++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCC
Confidence 566777777777654 44344456777788888887644 55 566667777888888888666 555 55557778888
Q ss_pred CcEEECCCCcCCcc
Q 027116 206 LNTLHLGGTEIAMI 219 (228)
Q Consensus 206 L~~L~L~~N~i~~i 219 (228)
|+.+++..+ ++.+
T Consensus 368 L~~i~lp~~-~~~~ 380 (394)
T 4fs7_A 368 LKKVELPKR-LEQY 380 (394)
T ss_dssp CCEEEEEGG-GGGG
T ss_pred CCEEEECCC-CEEh
Confidence 888877543 4443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=0.00028 Score=58.94 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=79.3
Q ss_pred cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116 97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD 176 (228)
Q Consensus 97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 176 (228)
.|..+..++.+.+..+... ..... |..+..++.+....+.+. ...+..+.+|+.+.+..+ ++ .++...|.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~----F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~ 317 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSL----FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFE 317 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCT----TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred cccccccceeEEcCCCcce-eeccc----cccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhc
Confidence 3444555555555444221 22222 555666666665554322 235778889999988765 55 57777899
Q ss_pred CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116 177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225 (228)
Q Consensus 177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 225 (228)
++.+|+.+++.++ ++. +....|.++.+|+.+.+..| ++.|+..+|.
T Consensus 318 ~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred CCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 9999999999754 665 66668999999999999877 9999888875
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.53 E-value=0.00019 Score=50.50 Aligned_cols=56 Identities=16% Similarity=-0.004 Sum_probs=38.7
Q ss_pred CEEeCCCCCcc--cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcccc
Q 027116 105 ESLDLTWNSIA--GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLN 167 (228)
Q Consensus 105 ~~L~ls~n~l~--~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 167 (228)
..++.+++.++ ..+.. -.++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-------lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-------FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-------CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-------CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888776 43322 1346788888888887665666777788888888888664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00025 Score=49.88 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=41.4
Q ss_pred EEEcCCCCcc--cccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccC
Q 027116 77 KLDLAQIRKW--ESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN 143 (228)
Q Consensus 77 ~L~l~~n~l~--~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 143 (228)
.++.++++++ .... . --++|++|+|++|+|+.+.+.. |..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-----~---lp~~l~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-----A---FPVDTTELVLTGNNLTALPPGL----LDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-----C---CCTTCSEEECTTSCCSSCCTTT----GGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-----C---CCcCCCEEECCCCcCCccChhh----hhhccccCEEEecCCCee
Confidence 6788888874 3221 1 1236889999999998877765 788889999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.81 E-value=31 Score=22.21 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=25.7
Q ss_pred cCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC
Q 027116 93 MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN 140 (228)
Q Consensus 93 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n 140 (228)
+....|..+..|+.+.+-.+ ++.+...+ |.++.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~a----F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGM----FSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTS----STTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHH----HhccCCccEEEEcCC
Confidence 34456777777777776654 44433333 666777777766543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.31 E-value=23 Score=22.86 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=26.2
Q ss_pred cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCc
Q 027116 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN 164 (228)
Q Consensus 126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 164 (228)
|.++..|+.+.+..+ ++......|.++.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 777888888877664 33344456777778877777654
Done!