BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027117
         (228 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1
           SV=1
          Length = 375

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%)

Query: 12  SSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
           S SF + + +EI  +GW+ L  +      +  +  D  GR H + ++L   YP  PP   
Sbjct: 107 SCSFCKDLLTEIGAIGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCV 166

Query: 72  ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
            D P  F++ W+ +S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R
Sbjct: 167 VDFPVPFSVSWTPQSSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATAR 226

Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSL 168
           +I LG N  I + +    P+ LPE  F+G+D +   L
Sbjct: 227 RIALGKNVSIAIEVDPRHPTMLPEFCFLGADHVTKPL 263


>sp|Q9NW38|FANCL_HUMAN E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1
           SV=2
          Length = 375

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
           F  S+  EI  +GW+ LV        +  +  D  GR H + ++L   YP   P    D 
Sbjct: 110 FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 169

Query: 75  PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
           P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I 
Sbjct: 170 PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 229

Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRN 175
           LG N  I + +    P+ LPEC F+G+D +V  L     RN
Sbjct: 230 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRN 270


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,478,624
Number of Sequences: 539616
Number of extensions: 3253937
Number of successful extensions: 8554
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8551
Number of HSP's gapped (non-prelim): 9
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)