Query 027117
Match_columns 228
No_of_seqs 88 out of 90
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zqs_A E3 ubiquitin-protein li 100.0 5.1E-75 1.7E-79 495.0 17.2 174 14-187 1-174 (186)
2 3k1l_B Fancl; UBC, ring, RWD, 100.0 8.3E-55 2.8E-59 400.1 16.1 204 17-227 109-331 (381)
3 2a7l_A Hypothetical ubiquitin- 96.5 0.017 5.8E-07 46.0 9.6 83 17-99 25-135 (136)
4 2fo3_A Ubiquitin-conjugating e 96.3 0.046 1.6E-06 42.5 10.8 85 16-100 8-117 (125)
5 2h2y_A Ubiquitin-conjugating e 96.3 0.063 2.2E-06 42.4 11.7 86 14-99 20-130 (136)
6 2aak_A UBC1, ubiquitin conjuga 96.1 0.051 1.7E-06 43.5 10.2 84 16-99 6-113 (152)
7 2ayv_A Ubiquitin-conjugating e 96.0 0.076 2.6E-06 43.4 11.2 88 12-99 19-130 (166)
8 1zdn_A Ubiquitin-conjugating e 96.0 0.069 2.4E-06 43.1 10.9 89 11-99 10-122 (158)
9 4gpr_A Ubiquitin-conjugating e 96.0 0.07 2.4E-06 42.7 10.6 85 16-100 6-114 (151)
10 3rcz_B SUMO-conjugating enzyme 95.9 0.056 1.9E-06 44.1 10.0 87 13-99 9-126 (163)
11 2r0j_A Ubiquitin carrier prote 95.9 0.065 2.2E-06 42.8 10.2 83 17-99 4-110 (149)
12 2c4o_A Ubiquitin-conjugating e 95.9 0.09 3.1E-06 42.9 11.0 86 14-99 19-128 (165)
13 1z2u_A Ubiquitin-conjugating e 95.9 0.073 2.5E-06 42.5 10.2 84 16-99 6-113 (150)
14 2awf_A Ubiquitin-conjugating e 95.8 0.12 4.1E-06 42.4 11.4 92 8-99 11-140 (172)
15 2e2c_A Ubiquitin conjugating e 95.7 0.11 3.6E-06 41.9 10.7 87 13-99 8-118 (156)
16 1jat_A Ubiquitin-conjugating e 95.7 0.073 2.5E-06 42.8 9.7 83 17-99 8-114 (155)
17 2bep_A Ubiquitin-conjugating e 95.7 0.11 3.9E-06 41.8 10.8 84 16-99 10-121 (159)
18 3h8k_A Ubiquitin-conjugating e 95.7 0.11 3.9E-06 41.9 10.8 84 16-99 5-126 (164)
19 2c2v_B Ubiquitin-conjugating e 95.6 0.08 2.7E-06 42.6 9.6 84 16-99 7-114 (154)
20 1ayz_A UBC2, ubiquitin-conjuga 95.6 0.1 3.4E-06 42.8 10.2 84 16-99 6-113 (169)
21 3bzh_A Ubiquitin-conjugating e 95.6 0.091 3.1E-06 44.2 10.1 87 13-99 47-157 (194)
22 1zuo_A Hypothetical protein LO 95.5 0.12 4.2E-06 43.0 10.8 89 12-100 25-154 (186)
23 2pwq_A Ubiquitin conjugating e 95.5 0.11 3.7E-06 44.5 10.4 95 5-99 14-133 (216)
24 1fxt_A Ubiquitin-conjugating e 95.5 0.12 4.1E-06 41.2 10.1 83 17-99 4-112 (149)
25 1wzv_A Ubiquitin-conjugating e 95.4 0.13 4.3E-06 41.3 9.9 83 16-99 6-114 (155)
26 2ucz_A UBC7, ubiquitin conjuga 95.3 0.18 6.1E-06 40.9 10.8 84 16-99 6-127 (165)
27 3k9o_A Ubiquitin-conjugating e 95.3 0.18 6.3E-06 42.1 11.1 84 16-99 7-118 (201)
28 4ds2_A Ubiquitin-conjugating e 95.2 0.13 4.6E-06 41.8 9.6 83 16-99 10-131 (167)
29 1yh2_A HSPC150 protein similar 95.1 0.27 9.2E-06 40.1 11.4 86 14-99 4-117 (169)
30 1i7k_A Ubiquitin-conjugating e 95.1 0.16 5.6E-06 42.0 10.2 88 12-99 28-139 (179)
31 2grr_A Ubiquitin-conjugating e 95.1 0.12 4.1E-06 41.8 8.9 85 15-99 8-123 (161)
32 1yrv_A Ubiquitin-conjugating l 95.0 0.19 6.5E-06 41.2 10.2 86 14-99 23-135 (169)
33 2q0v_A Ubiquitin-conjugating e 95.0 0.21 7.1E-06 40.5 10.2 84 16-99 23-136 (156)
34 2gjd_A Ubiquitin-conjugating e 94.9 0.2 7E-06 40.3 9.9 84 16-99 6-120 (157)
35 1c4z_D UBCH7, ubiquitin conjug 94.9 0.13 4.4E-06 41.2 8.6 83 17-99 5-112 (154)
36 1jat_B Ubiquitin-conjugating e 94.8 0.41 1.4E-05 37.6 11.3 83 17-99 9-121 (138)
37 3rz3_A Ubiquitin-conjugating e 94.7 0.36 1.2E-05 39.8 11.2 86 14-99 7-130 (183)
38 3o2u_A NEDD8-conjugating enzym 94.6 0.3 1E-05 40.7 10.5 91 9-99 24-142 (190)
39 1y8x_A Ubiquitin-conjugating e 94.5 0.32 1.1E-05 39.3 10.2 87 13-99 5-113 (160)
40 2f4w_A Ubiquitin-conjugating e 94.4 0.37 1.3E-05 40.1 10.7 89 11-99 11-124 (187)
41 3ceg_A Baculoviral IAP repeat- 94.4 0.31 1.1E-05 44.2 10.9 91 9-99 71-202 (323)
42 3e46_A Ubiquitin-conjugating e 94.4 0.31 1.1E-05 42.6 10.6 86 14-99 57-170 (253)
43 2a4d_A Ubiquitin-conjugating e 94.3 0.5 1.7E-05 38.5 11.0 84 16-99 27-141 (160)
44 2f4z_A Tgtwinscan_2721 - E2 do 94.3 0.34 1.2E-05 40.6 10.1 86 14-99 32-155 (193)
45 3fn1_B NEDD8-conjugating enzym 94.2 0.32 1.1E-05 39.4 9.6 91 9-99 9-129 (167)
46 2onu_A Ubiquitin-conjugating e 94.0 0.28 9.5E-06 39.4 8.7 80 17-96 5-106 (152)
47 2nvu_C NEDD8-conjugating enzym 93.6 0.55 1.9E-05 38.8 10.1 89 10-99 22-133 (180)
48 2z5d_A Ubiquitin-conjugating e 93.4 0.26 9.1E-06 40.9 7.8 86 14-99 25-131 (179)
49 2y9m_A Ubiquitin-conjugating e 93.3 0.89 3E-05 37.1 10.7 84 16-99 8-130 (172)
50 1tte_A Ubiquitin-conjugating e 92.9 0.27 9.3E-06 41.9 7.3 83 17-99 5-113 (215)
51 1yf9_A Ubiquitin carrier prote 92.8 0.65 2.2E-05 38.0 9.3 79 17-95 15-114 (171)
52 2hlw_A Ubiquitin-conjugating e 92.5 0.96 3.3E-05 37.1 9.8 85 15-99 36-151 (170)
53 4ddg_A Ubiquitin-conjugating e 92.4 0.82 2.8E-05 42.1 10.4 84 16-99 5-112 (399)
54 2ebm_A RWD domain-containing p 86.9 2.9 0.0001 31.6 7.9 59 14-72 10-76 (128)
55 3obq_A Tumor susceptibility ge 86.5 2.4 8.1E-05 34.2 7.4 52 49-100 65-137 (146)
56 1ukx_A GCN2, GCN2 EIF2alpha ki 85.9 8.7 0.0003 29.2 10.3 61 12-72 8-84 (137)
57 2ebk_A RWD domain-containing p 81.0 6.3 0.00022 29.9 7.5 59 15-73 8-78 (128)
58 2yz0_A Serine/threonine-protei 80.4 9.1 0.00031 29.3 8.3 60 14-73 10-84 (138)
59 2day_A Ring finger protein 25; 75.0 17 0.00057 27.3 8.3 56 18-73 12-81 (128)
60 2daw_A RWD domain containing p 73.6 5.8 0.0002 31.5 5.5 24 52-75 76-99 (154)
61 3r3q_A Suppressor protein STP2 69.1 5.5 0.00019 32.5 4.5 47 53-99 83-154 (162)
62 2dax_A Protein C21ORF6; RWD do 62.9 13 0.00043 29.1 5.4 24 52-75 74-97 (152)
63 2z6o_A UFM1-conjugating enzyme 61.0 9.9 0.00034 31.5 4.6 21 52-72 84-104 (172)
64 3ipj_A PTS system, iiabc compo 42.3 19 0.00064 26.7 3.1 34 16-49 6-40 (95)
65 4f98_A Hypothetical protein; P 28.5 74 0.0025 22.5 4.1 32 30-61 27-63 (69)
66 3bp3_A Glucose-specific phosph 26.5 30 0.001 24.7 1.9 27 23-49 11-38 (82)
67 3kpa_A Probable ubiquitin fold 24.5 46 0.0016 27.4 2.7 21 52-72 86-106 (168)
No 1
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-75 Score=495.01 Aligned_cols=174 Identities=31% Similarity=0.614 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHhccceeeeecCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCccCcHHHHHH
Q 027117 14 SFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQ 93 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~~l~~id~~ls~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~dlP~~f~~~w~~~ssL~~v~~ 93 (228)
+||++|++||++|||+||+++|++|++|+|+++|++||+|.|+|+|+++||+++|+|++|||++|.++|+++|||+++++
T Consensus 1 ~~y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~~w~~~ssL~~v~~ 80 (186)
T 3zqs_A 1 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYS 80 (186)
T ss_dssp CCSCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSSCCCCCCCTTCCHHHHHH
T ss_pred ChHHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCCCcccccCCCccHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeCCchhhHHHHHHHh
Q 027117 94 QFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQ 173 (228)
Q Consensus 94 qF~~~Le~lq~Fwd~ldeID~~~wVLEP~~Ptrs~t~RRIaLg~~~sl~i~VdP~~P~~lPe~~FlG~~~~V~~Lr~~l~ 173 (228)
||+++||+||+|||+||+||++||||||++||||+++||||||+||||+|+|||+||+|+|+|+|+||+++|++||++|+
T Consensus 81 qF~~~Le~lq~Fwd~ldeID~~~wVleP~~Ptr~~~~RRIalg~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~ 160 (186)
T 3zqs_A 81 QFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLS 160 (186)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHSCEEESSSCCTTCCEEEEEEETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcceeccCCCCCccCcEEEEEECCCcEEEEEECCCCCCcCCceEEECChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcee
Q 027117 174 RNSKRCASSSSFCL 187 (228)
Q Consensus 174 ~n~~~Wd~~~si~e 187 (228)
+|+++||+++++++
T Consensus 161 ~nl~~Wd~~~~i~~ 174 (186)
T 3zqs_A 161 RNIHLWDPENSVLQ 174 (186)
T ss_dssp HHGGGCCTTSCHHH
T ss_pred hhHhhcCCCCCHHH
Confidence 99999999999998
No 2
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.3e-55 Score=400.08 Aligned_cols=204 Identities=18% Similarity=0.249 Sum_probs=182.1
Q ss_pred HHHHHHHHHhc--cceeeeecCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceec---ccCccCcHHHH
Q 027117 17 RSVYSEIEEVG--WEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNL---KWSRKSRLKDL 91 (228)
Q Consensus 17 s~li~Eie~iG--W~~l~~id~~ls~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~dlP~~f~~---~w~~~ssL~~v 91 (228)
+.|+.||.+|. -+..+++|.++++|+|..++. .|+|+|+++++ ...+++++||..+.+ --.+++||++|
T Consensus 109 ~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~~-~~~h~Lel~~~-----~~~v~~h~LP~~~~~~e~l~k~~ssL~~v 182 (381)
T 3k1l_B 109 GNIYYDILALYKSNEYCLQVDEACSMIRFSEFTD-FEQHYLELKIP-----SLLLLDHSLPDCVSLGEMLTKSAGNLEEA 182 (381)
T ss_dssp CCHHHHHHHHHSCSSCEEEECGGGCEEEEEEETT-EEEEEEEEETT-----TCCEEEESSCTTSCHHHHHHHHCCSHHHH
T ss_pred hhHHHHHHHhcCccceEEEecCCccEEEeccccC-ccceEEEEecC-----ceEEecccCCcchhHHHHhcCccccHHHH
Confidence 45678999998 458899999999999999965 99999999998 367999999965422 12458999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEE-cCCCCCCCCceeeeCCchhhHHHHH
Q 027117 92 LQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRK 170 (228)
Q Consensus 92 ~~qF~~~Le~lq~Fwd~ldeID~~~wVLEP~~Ptrs~t~RRIaLg~~~sl~i~V-dP~~P~~lPe~~FlG~~~~V~~Lr~ 170 (228)
++||+++||+||+|||+||+||++||||||++|+||+++||||||++|||+|+| ||++|+|+|+|+|+||+++|++||+
T Consensus 183 ~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~kPtrs~t~RRIaLgn~vSl~IeV~DP~~Pr~lPe~~FlGpd~~V~~Lr~ 262 (381)
T 3k1l_B 183 LNLFRKLLEDLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRH 262 (381)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHSCCCBSSSCCTTCCEEEEEEETTEEEEEEESCTTSTTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEEeCCCeEEEEEeCCCCCCCcCceeEEECChhHhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhccCCCCCCCCcee-------e-eccccchhhcc----ccCCCCcee-eeEeecCCCCCCCcccccC
Q 027117 171 TWQRNSKRCASSSSFCL-------L-RVPIGLRLRCR----LSVTEGECR-CYCFNKKKTSTLPPPKCET 227 (228)
Q Consensus 171 ~l~~n~~~Wd~~~si~e-------~-~fP~~~~~~~~----~~~~~~~C~-C~~~r~~~~~~lP~~~C~~ 227 (228)
+|++|+++||++++|++ + +||++...+.. +.++..+|+ ||+++.. ...+|+++|+|
T Consensus 263 ~l~~Nl~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~-~g~lPdk~C~n 331 (381)
T 3k1l_B 263 VLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLD-GGEVPLVSCDN 331 (381)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCT-TCCCCCBCCSC
T ss_pred HHhhhhhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeecC-CCCCccccccC
Confidence 99999999999999998 4 89999887532 445678999 9999843 24599999875
No 3
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=96.53 E-value=0.017 Score=46.01 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccee--e-----eecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCc---ee--
Q 027117 17 RSVYSEIEEVGWEHL--V-----RLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI---FN-- 79 (228)
Q Consensus 17 s~li~Eie~iGW~~l--~-----~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~~---f~-- 79 (228)
.+|.+|+.++.-+.. + -.+.|+...++.+.... |....++|.+|.+||.+||.+...=|.- .+
T Consensus 25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~ 104 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY 104 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence 899999999853321 1 23567888888887443 5899999999999999999987544431 11
Q ss_pred -----------cccCccCcHHHHHHHHHHHH
Q 027117 80 -----------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 80 -----------~~w~~~ssL~~v~~qF~~~L 99 (228)
-.|+|..++..|+...+..|
T Consensus 105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL 135 (136)
T 2a7l_A 105 SNGHICLSILTEDWSPALSVQSVCLSIISML 135 (136)
T ss_dssp TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEchhcCCCCCCCCcHHHHHHHHHHHh
Confidence 17999989998888777654
No 4
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=96.31 E-value=0.046 Score=42.54 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCce--e----
Q 027117 16 SRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--N---- 79 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~~f--~---- 79 (228)
-.+|.+|+.++.=+. +.-.+.++...+..+.... |....++|.++.+||.+||.+...=|..+ +
T Consensus 8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~ 87 (125)
T 2fo3_A 8 NYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSN 87 (125)
T ss_dssp -CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCC
Confidence 368999999984331 2223567888888887432 68999999999999999999875544211 1
Q ss_pred ---------cccCccCcHHHHHHHHHHHHH
Q 027117 80 ---------LKWSRKSRLKDLLQQFREHLE 100 (228)
Q Consensus 80 ---------~~w~~~ssL~~v~~qF~~~Le 100 (228)
-.|++..++..|+...+..|.
T Consensus 88 G~iCl~iL~~~W~P~~~i~~vl~si~~ll~ 117 (125)
T 2fo3_A 88 GDICLSLLGDDYNPSLSISGLVLSIISMLS 117 (125)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred CEEEchhcCCCCCCCCcHHHHHHHHHHHHh
Confidence 179999999999888877764
No 5
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=96.30 E-value=0.063 Score=42.45 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCce--e--
Q 027117 14 SFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--N-- 79 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~~f--~-- 79 (228)
.--.+|.+|+.++.-+. +.-.+.++...+..+.... |....++|.+|.+||.+||.+...=|..+ +
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 99 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY 99 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 44689999999985331 2223567888888887432 78999999999999999999875544211 1
Q ss_pred -----------cccCccCcHHHHHHHHHHHH
Q 027117 80 -----------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 80 -----------~~w~~~ssL~~v~~qF~~~L 99 (228)
-.|+|..++..|+...+..|
T Consensus 100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll 130 (136)
T 2h2y_A 100 SNGDICLSVLGDDYNPSLSISGLILSIISML 130 (136)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEECccccCCCCCCCcHHHHHHHHHHHH
Confidence 17999999999888877766
No 6
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=96.08 E-value=0.051 Score=43.55 Aligned_cols=84 Identities=12% Similarity=0.313 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
-.+|.+|+.++.=+ .+.-.+.++...+..+... .|....++|.+|.+||.+||.+...=|.
T Consensus 6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 85 (152)
T 2aak_A 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCC
Confidence 47899999998432 1233466788888888753 4788999999999999999998754431
Q ss_pred c-----eecccCccCcHHHHHHHHHHHH
Q 027117 77 I-----FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ~-----f~~~w~~~ssL~~v~~qF~~~L 99 (228)
. +.-.|+|..+|..|+...+..|
T Consensus 86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (152)
T 2aak_A 86 SICLDILQNQWSPIYDVAAILTSIQSLL 113 (152)
T ss_dssp BBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred EEechhhcCCCCCCCcHHHHHHHHHHHH
Confidence 0 0116999889988877766655
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=96.03 E-value=0.076 Score=43.44 Aligned_cols=88 Identities=15% Similarity=0.333 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-----
Q 027117 12 SSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----- 76 (228)
Q Consensus 12 ~~~~ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----- 76 (228)
.+.--.+|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 334568999999998433 22234567888888888432 789999999999999999998754442
Q ss_pred ----c-----eecccCccCcHHHHHHHHHHHH
Q 027117 77 ----I-----FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----~-----f~~~w~~~ssL~~v~~qF~~~L 99 (228)
. +.-.|+|..+|..|+...+..|
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 130 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLSISSLL 130 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHHHHHHH
Confidence 0 0117999999988887777665
No 8
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=96.03 E-value=0.069 Score=43.13 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=64.9
Q ss_pred CChhhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 11 NSSSFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 11 ~~~~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
-++..-++|.+|+.++.-+. +.-.+.++...+..+.... |....++|.+|.+||.+||.+...=|.
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 89 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN 89 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence 34566789999999985331 2223567888888887433 678999999999999999999865552
Q ss_pred -----ce-----ecccCccCcHHHHHHHHHHHH
Q 027117 77 -----IF-----NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -----~f-----~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+ .-.|+|..++..|+...+..|
T Consensus 90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 122 (158)
T 1zdn_A 90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLL 122 (158)
T ss_dssp BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHH
Confidence 00 117999889988877766655
No 9
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=95.99 E-value=0.07 Score=42.73 Aligned_cols=85 Identities=15% Similarity=0.336 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
.++|.+|+.++.-+ .+.-.+.++...+..+... .|....++|.++.+||.+||.+...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 85 (151)
T 4gpr_A 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNG 85 (151)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCC
Confidence 57999999998543 2223456799999998843 2788999999999999999998755442
Q ss_pred c-----eecccCccCcHHHHHHHHHHHHH
Q 027117 77 I-----FNLKWSRKSRLKDLLQQFREHLE 100 (228)
Q Consensus 77 ~-----f~~~w~~~ssL~~v~~qF~~~Le 100 (228)
. +.-.|++..+|..|+...+..|.
T Consensus 86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~ 114 (151)
T 4gpr_A 86 VICLDILKDQWSPALTLSRVLLSISSLLT 114 (151)
T ss_dssp BBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred EEEcccccCCCCCCCcHHHHHHHHHHHhc
Confidence 0 11279999999988877766653
No 10
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=95.95 E-value=0.056 Score=44.13 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHhcccee-----eeecC-----CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-
Q 027117 13 SSFSRSVYSEIEEVGWEHL-----VRLSE-----DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY- 76 (228)
Q Consensus 13 ~~~ys~li~Eie~iGW~~l-----~~id~-----~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~- 76 (228)
.+=-.+|.+|+.++.-+.. .-.+. ++......+.... |....++|.++.+||.+||.|...=|.
T Consensus 9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~ 88 (163)
T 3rcz_B 9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88 (163)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 3446799999999865522 12222 6777788887543 688999999999999999998755441
Q ss_pred --------ce-----ec--ccCccCcHHHHHHHHHHHH
Q 027117 77 --------IF-----NL--KWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 --------~f-----~~--~w~~~ssL~~v~~qF~~~L 99 (228)
.+ .- .|++..+|..|+...+..|
T Consensus 89 HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll 126 (163)
T 3rcz_B 89 HPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126 (163)
T ss_dssp STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHH
Confidence 01 11 3999999988877766655
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=95.94 E-value=0.065 Score=42.82 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027117 17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------I 77 (228)
Q Consensus 17 s~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---------~ 77 (228)
++|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.+...=|. .
T Consensus 4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~ 83 (149)
T 2r0j_A 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGR 83 (149)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCE
Confidence 6899999998433 22234566888888876432 789999999999999999998765442 0
Q ss_pred -----eecccCccCcHHHHHHHHHHHH
Q 027117 78 -----FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 -----f~~~w~~~ssL~~v~~qF~~~L 99 (228)
+.-.|+|..+|..|+...+..|
T Consensus 84 iCl~iL~~~W~p~~~i~~vl~~i~~ll 110 (149)
T 2r0j_A 84 ICLDILKDKWSPALQIRTVLLSIQALL 110 (149)
T ss_dssp BCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred EechhcCCCCCCCCcHHHHHHHHHHHH
Confidence 0117999999988887776665
No 12
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=95.89 E-value=0.09 Score=42.91 Aligned_cols=86 Identities=16% Similarity=0.359 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027117 14 SFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------- 76 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~------- 76 (228)
.--++|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 19 ~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~ 98 (165)
T 2c4o_A 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98 (165)
T ss_dssp HHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC
Confidence 3458999999998533 22234567888888887432 688999999999999999998765552
Q ss_pred -------ceecccCccCcHHHHHHHHHHHH
Q 027117 77 -------IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -------~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|+|..+|..|+...+..|
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~si~~ll 128 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLSICSLL 128 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHHHHHHH
Confidence 01117999999988887776665
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=95.85 E-value=0.073 Score=42.52 Aligned_cols=84 Identities=19% Similarity=0.419 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
-++|.+|+.++.=+ .+.-.+.++...+..+... .|....++|.+|.+||.+||.+...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 85 (150)
T 1z2u_A 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 85 (150)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCC
Confidence 37899999998433 2223456788888887743 2788999999999999999998765442
Q ss_pred -----ceecccCccCcHHHHHHHHHHHH
Q 027117 77 -----IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -----~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|+|..+|..|+...+..|
T Consensus 86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (150)
T 1z2u_A 86 SICLDILRSQWSPALTISKVLLSICSLL 113 (150)
T ss_dssp BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred eEeeccccCCCCCCCCHHHHHHHHHHHh
Confidence 01117999999988887776665
No 14
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=95.77 E-value=0.12 Score=42.44 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=66.0
Q ss_pred ccCCChhhHHHHHHHHHHhccce-----eeeec-CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC
Q 027117 8 ESANSSSFSRSVYSEIEEVGWEH-----LVRLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY 76 (228)
Q Consensus 8 ~~~~~~~~ys~li~Eie~iGW~~-----l~~id-~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~ 76 (228)
.++.......+|.+|+.+|.-+. +.-.+ .++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 11 ~~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i 90 (172)
T 2awf_A 11 SSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90 (172)
T ss_dssp --CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence 35566777889999999984331 22234 57888888887533 789999999999999999998754442
Q ss_pred --------------cee-------------cccCccCcHHHHHHHHHHHH
Q 027117 77 --------------IFN-------------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 --------------~f~-------------~~w~~~ssL~~v~~qF~~~L 99 (228)
.+. -.|+|..+|..|+...+..|
T Consensus 91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll 140 (172)
T 2awf_A 91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140 (172)
T ss_dssp CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence 011 25999889988887776665
No 15
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=95.72 E-value=0.11 Score=41.90 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCCc-----
Q 027117 13 SSFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYI----- 77 (228)
Q Consensus 13 ~~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~~----- 77 (228)
..--.+|.+|+.++.-+. +.-.+.++......+... .|....++|.+|.+||.+||.|...=|.-
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 345689999999885331 122345788888888743 27889999999999999999987654421
Q ss_pred ---------eecccCccCcHHHHHHHHHHHH
Q 027117 78 ---------FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 ---------f~~~w~~~ssL~~v~~qF~~~L 99 (228)
+.-.|+|..+|..|+...+..|
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll 118 (156)
T 2e2c_A 88 QSGNICLDILKENWTASYDVRTILLSLQSLL 118 (156)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred cCceEECccccccCCCCCcHHHHHHHHHHHH
Confidence 0116999999988887766655
No 16
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=95.71 E-value=0.073 Score=42.79 Aligned_cols=83 Identities=14% Similarity=0.333 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027117 17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------I 77 (228)
Q Consensus 17 s~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~---------~ 77 (228)
.+|.+|+.++.=+ .+.-.+.++...+..+... .|....++|.+|.+||.+||.|...=|. .
T Consensus 8 ~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~ 87 (155)
T 1jat_A 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGR 87 (155)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCE
Confidence 7899999988433 2223456688888888743 2788999999999999999998754441 0
Q ss_pred e-----ecccCccCcHHHHHHHHHHHH
Q 027117 78 F-----NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 f-----~~~w~~~ssL~~v~~qF~~~L 99 (228)
+ .-.|++..+|..|+...+..|
T Consensus 88 iCl~iL~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1jat_A 88 ICLDVLKTNWSPALQIRTVLLSIQALL 114 (155)
T ss_dssp BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred EEchhhccCCCCCCCHHHHHHHHHHHH
Confidence 0 117999999988887766655
No 17
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=95.69 E-value=0.11 Score=41.82 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c-
Q 027117 16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I- 77 (228)
Q Consensus 16 ys~li~Eie~iGW~--------~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~----~- 77 (228)
-++|.+|+.++.-+ .+.-.+.++...+..+... .|....++|.+|.+||.+||.|...=|. .
T Consensus 10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 89 (159)
T 2bep_A 10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 89 (159)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCC
Confidence 47899999988531 2233456789999888742 2778999999999999999998765431 0
Q ss_pred -----e--e---cccCccCcHHHHHHHHHHHH
Q 027117 78 -----F--N---LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 -----f--~---~~w~~~ssL~~v~~qF~~~L 99 (228)
+ . -.|++..++..|+...+..|
T Consensus 90 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 121 (159)
T 2bep_A 90 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL 121 (159)
T ss_dssp TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEeChhhhccCCCCCcHHHHHHHHHHHH
Confidence 1 1 15999999988887777666
No 18
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=95.69 E-value=0.11 Score=41.94 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccce-----eeeecC-CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027117 16 SRSVYSEIEEVGWEH-----LVRLSE-DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~id~-~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~-------- 76 (228)
-++|.+|+.++.-+. +.-.+. ++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~ 84 (164)
T 3h8k_A 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPD 84 (164)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCC
Confidence 578999999985431 222344 8999999888432 688999999999999999998754441
Q ss_pred ------cee-------------cccCccCcHHHHHHHHHHHH
Q 027117 77 ------IFN-------------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------~f~-------------~~w~~~ssL~~v~~qF~~~L 99 (228)
.+. -.|+|..+|..|+...+..|
T Consensus 85 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll 126 (164)
T 3h8k_A 85 GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 126 (164)
T ss_dssp SBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred CcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHH
Confidence 011 25999889998887777665
No 19
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=95.64 E-value=0.08 Score=42.60 Aligned_cols=84 Identities=17% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
-++|.+|+.++.-+. +.-.+.++...+..+.... |....++|.+|.+||.+||.+...=|.
T Consensus 7 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 86 (154)
T 2c2v_B 7 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 86 (154)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCC
Confidence 378999999985331 2234567888888887422 788999999999999999998765542
Q ss_pred c-----eecccCccCcHHHHHHHHHHHH
Q 027117 77 I-----FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ~-----f~~~w~~~ssL~~v~~qF~~~L 99 (228)
. +.-.|+|..+|..|+...+..|
T Consensus 87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 114 (154)
T 2c2v_B 87 RICLDILKDKWSPALQIRTVLLSIQALL 114 (154)
T ss_dssp BBCCHHHHTSCCTTCCHHHHHHHHHHHT
T ss_pred eEEchhccCCCCCCCcHHHHHHHHHHHH
Confidence 0 0127999889988877666554
No 20
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=95.58 E-value=0.1 Score=42.84 Aligned_cols=84 Identities=13% Similarity=0.341 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
-.+|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G 85 (169)
T 1ayz_A 6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANG 85 (169)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCC
Confidence 47999999998533 12334567888877777432 788999999999999999998755442
Q ss_pred -----ceecccCccCcHHHHHHHHHHHH
Q 027117 77 -----IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -----~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|+|..+|..|+...+..|
T Consensus 86 ~ICl~iL~~~WsP~~~i~~vL~si~~ll 113 (169)
T 1ayz_A 86 EICLDILQNRWTPTYDVASILTSIQSLF 113 (169)
T ss_dssp BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred eEeehhhccCCCCcCcHHHHHHHHHHHH
Confidence 01116999889988877665554
No 21
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=95.58 E-value=0.091 Score=44.15 Aligned_cols=87 Identities=16% Similarity=0.334 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027117 13 SSFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (228)
Q Consensus 13 ~~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~------ 76 (228)
+.--.+|.+|+.++.=+. +.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 345789999999985332 2223567888888887543 789999999999999999998754442
Q ss_pred --------ceecccCccCcHHHHHHHHHHHH
Q 027117 77 --------IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 --------~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|++..+|..|+...+..|
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 157 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLL 157 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHH
Confidence 01116999989988887766655
No 22
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=95.55 E-value=0.12 Score=43.03 Aligned_cols=89 Identities=16% Similarity=0.331 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHHhccc--------eeeeecCCcceEEEEEEe--CC----C-----------CEEEEEEEecCCCCCC
Q 027117 12 SSSFSRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVID--KK----G-----------RVHCMEIQLDKNYPRS 66 (228)
Q Consensus 12 ~~~~ys~li~Eie~iGW~--------~l~~id~~ls~i~l~~~D--~~----g-----------R~H~l~v~l~~~yp~~ 66 (228)
+..--.+|.+|+.++.-+ .+.-.+.++...++.+.. .. | ....++|.+|.+||.+
T Consensus 25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~ 104 (186)
T 1zuo_A 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD 104 (186)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence 344578999999987532 233346678888888874 21 2 6788999999999999
Q ss_pred CCceeecCCCc------------ee-c---ccCccCcHHHHHHHHHHHHH
Q 027117 67 PPSISADVPYI------------FN-L---KWSRKSRLKDLLQQFREHLE 100 (228)
Q Consensus 67 ~P~~~~dlP~~------------f~-~---~w~~~ssL~~v~~qF~~~Le 100 (228)
||.|..-=|.- +. + .|+|..++..|+...+..|.
T Consensus 105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~ 154 (186)
T 1zuo_A 105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV 154 (186)
T ss_dssp CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHc
Confidence 99887544421 01 1 59999999999888887764
No 23
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.49 E-value=0.11 Score=44.49 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=66.0
Q ss_pred cccccCCChhhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecC
Q 027117 5 RCRESANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADV 74 (228)
Q Consensus 5 ~~~~~~~~~~~ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dl 74 (228)
|-+.....+.--.+|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=
T Consensus 14 ~~~~~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T 93 (216)
T 2pwq_A 14 RENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT 93 (216)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred hhccccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccC
Confidence 4444555556678999999998543 22334667999999887433 6889999999999999999987544
Q ss_pred CC----c------eec-----ccCccCcHHHHHHHHHHHH
Q 027117 75 PY----I------FNL-----KWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 75 P~----~------f~~-----~w~~~ssL~~v~~qF~~~L 99 (228)
|. . +.+ .|+|..+|..|+...+..|
T Consensus 94 ~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL 133 (216)
T 2pwq_A 94 KIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALL 133 (216)
T ss_dssp CCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHH
Confidence 31 1 111 5999989988877766655
No 24
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=95.48 E-value=0.12 Score=41.20 Aligned_cols=83 Identities=27% Similarity=0.394 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccc-----eeeeecC-CcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c----
Q 027117 17 RSVYSEIEEVGWE-----HLVRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I---- 77 (228)
Q Consensus 17 s~li~Eie~iGW~-----~l~~id~-~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~----~---- 77 (228)
++|.+|+.++.=+ .+.-.+. ++...+..+... .|....++|.+|.+||.+||.+...=+. .
T Consensus 4 ~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~ 83 (149)
T 1fxt_A 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT 83 (149)
T ss_dssp HHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCC
Confidence 6889999988433 2223344 788999888742 2788999999999999999998765431 0
Q ss_pred ee-------cccCccCcHHHHHHHHHHHH
Q 027117 78 FN-------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 f~-------~~w~~~ssL~~v~~qF~~~L 99 (228)
-. -.|+|..++..|+...+..|
T Consensus 84 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 112 (149)
T 1fxt_A 84 GAICLDILKNAWSPVITLKSALISLQALL 112 (149)
T ss_dssp CCBCCHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred CeEeCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence 01 16999889988887766655
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=95.36 E-value=0.13 Score=41.32 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhccc-----ee-eeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027117 16 SRSVYSEIEEVGWE-----HL-VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~-----~l-~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~-------- 76 (228)
-.+|.+|+.++.-+ .+ .-.+.++...+..+. .. |....++|.++.+||.+||.|...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~ 84 (155)
T 1wzv_A 6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN 84 (155)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCC
Confidence 36899999988533 12 223567888888887 43 578899999999999999998755442
Q ss_pred ------ce-ecccCccCcHHHHHHHHHHHH
Q 027117 77 ------IF-NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------~f-~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+ .-.|+|..+|..|+...+..|
T Consensus 85 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1wzv_A 85 GQICLPIISSENWKPCTKTCQVLEALNVLV 114 (155)
T ss_dssp CBCCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEeecCCCccCCCCCCcHHHHHHHHHHHH
Confidence 11 126999889988887766655
No 26
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=95.32 E-value=0.18 Score=40.85 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccce-----eeeec-CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027117 16 SRSVYSEIEEVGWEH-----LVRLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~id-~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~-------- 76 (228)
-++|.+|+.++.=+. +.-.+ .++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~ 85 (165)
T 2ucz_A 6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPN 85 (165)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCC
Confidence 478999999885332 22234 57888888887543 688999999999999999998754431
Q ss_pred ------ce-------------ecccCccCcHHHHHHHHHHHH
Q 027117 77 ------IF-------------NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------~f-------------~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+ .-.|+|..++..|+...+..|
T Consensus 86 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 127 (165)
T 2ucz_A 86 GEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 127 (165)
T ss_dssp SBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred CcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 11 126999889988887776665
No 27
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=95.31 E-value=0.18 Score=42.14 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c-
Q 027117 16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I- 77 (228)
Q Consensus 16 ys~li~Eie~iGW~--------~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----~- 77 (228)
-++|.+|+.++.-+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|. .
T Consensus 7 ~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 86 (201)
T 3k9o_A 7 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 86 (201)
T ss_dssp HHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCc
Confidence 47899999988432 23344678999999988432 788999999999999999998755431 0
Q ss_pred ----------eecccCccCcHHHHHHHHHHHH
Q 027117 78 ----------FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 ----------f~~~w~~~ssL~~v~~qF~~~L 99 (228)
+.-.|+|..+|..|+...+..|
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 118 (201)
T 3k9o_A 87 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL 118 (201)
T ss_dssp TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCeeeCcccccCCCCCCCHHHHHHHHHHHh
Confidence 1127999999988877666555
No 28
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=95.17 E-value=0.13 Score=41.77 Aligned_cols=83 Identities=12% Similarity=0.317 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhccce-----------------eeeecCCcceEEEEEEeCC-------CCEEEEEEEecCCCCCCCCcee
Q 027117 16 SRSVYSEIEEVGWEH-----------------LVRLSEDLKFLSFRVIDKK-------GRVHCMEIQLDKNYPRSPPSIS 71 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----------------l~~id~~ls~i~l~~~D~~-------gR~H~l~v~l~~~yp~~~P~~~ 71 (228)
-++|.+|+.++.=+. +.-.+.++...++.+.... |....++|.++.+||.+||.|.
T Consensus 10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~ 89 (167)
T 4ds2_A 10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVR 89 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEE
Confidence 468888888875433 2223667899999988433 7889999999999999999987
Q ss_pred ecCCCcee---------------cccCccCcHHHHHHHHHHHH
Q 027117 72 ADVPYIFN---------------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 72 ~dlP~~f~---------------~~w~~~ssL~~v~~qF~~~L 99 (228)
..=|. |. -.|++..++..++-+....|
T Consensus 90 f~t~i-~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l 131 (167)
T 4ds2_A 90 FVTPV-YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRV 131 (167)
T ss_dssp ESSCC-CCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred EeCCc-ccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHH
Confidence 65552 11 17999888888766555544
No 29
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=95.15 E-value=0.27 Score=40.09 Aligned_cols=86 Identities=15% Similarity=0.273 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027117 14 SFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------- 76 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~------- 76 (228)
+--.+|.+|+.++.-+. +.-.+.++...+..+.... |....++|.++.+||.+||.|...=|.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~ 83 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc
Confidence 34579999999985331 2223567888888887532 789999999999999999998755442
Q ss_pred -------cee----cccCccCcHHHHHHHHHHHH
Q 027117 77 -------IFN----LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -------~f~----~~w~~~ssL~~v~~qF~~~L 99 (228)
.+. -.|++..+|..|+...+..|
T Consensus 84 ~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll 117 (169)
T 1yh2_A 84 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM 117 (169)
T ss_dssp TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred CCeEecccccCCcccCCCCCCcHHHHHHHHHHHH
Confidence 111 26999889988876666555
No 30
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=95.12 E-value=0.16 Score=42.04 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHHhccce-----eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCc----
Q 027117 12 SSSFSRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI---- 77 (228)
Q Consensus 12 ~~~~ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~~---- 77 (228)
+..--.+|.+|+.++.-+. +.-.+.++......+.... |....++|.++.+||.+||.|...=|.-
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 107 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV 107 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcc
Confidence 3455789999999885331 1223456777777777433 6899999999999999999987654420
Q ss_pred ----------eecccCccCcHHHHHHHHHHHH
Q 027117 78 ----------FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 ----------f~~~w~~~ssL~~v~~qF~~~L 99 (228)
+.-.|++..+|..|+...+..|
T Consensus 108 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 139 (179)
T 1i7k_A 108 DTQGNISLDILKEKWSALYDVRTILLSIQSLL 139 (179)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred ccCCeEEcccCcCcCCCCCCHHHHHHHHHHHH
Confidence 0116999989988877666655
No 31
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=95.05 E-value=0.12 Score=41.85 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcccee-----eee-----cCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---
Q 027117 15 FSRSVYSEIEEVGWEHL-----VRL-----SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--- 76 (228)
Q Consensus 15 ~ys~li~Eie~iGW~~l-----~~i-----d~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~--- 76 (228)
--++|.+|+.++.-+.. .-. +.++...+..+... .|....++|.+|.+||.+||.|...=|.
T Consensus 8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 87 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccC
Confidence 35799999999864421 111 24677777777643 2688899999999999999999765442
Q ss_pred -----------ceec--ccCccCcHHHHHHHHHHHH
Q 027117 77 -----------IFNL--KWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -----------~f~~--~w~~~ssL~~v~~qF~~~L 99 (228)
.+.- .|++..+|..|+...+..|
T Consensus 88 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 123 (161)
T 2grr_A 88 NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123 (161)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHH
Confidence 1111 5999989988877766654
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=95.02 E-value=0.19 Score=41.20 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c--
Q 027117 14 SFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I-- 77 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----~-- 77 (228)
.-..+|.+|+.++.=+ .+.-.+.++...++.+.... |....++|.+|.+||.+||.|...=|. .
T Consensus 23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 102 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence 3468999999998432 22334677889999887432 788999999999999999998754431 1
Q ss_pred ---------ee--cccCccCcHHHHHHHHHHHH
Q 027117 78 ---------FN--LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 78 ---------f~--~~w~~~ssL~~v~~qF~~~L 99 (228)
+. -.|+|..+|..|+...+..|
T Consensus 103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll 135 (169)
T 1yrv_A 103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVML 135 (169)
T ss_dssp TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHH
Confidence 11 26999888888877766655
No 33
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=95.01 E-value=0.21 Score=40.50 Aligned_cols=84 Identities=25% Similarity=0.435 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccce-----eeee-c-C--CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-----
Q 027117 16 SRSVYSEIEEVGWEH-----LVRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~i-d-~--~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----- 76 (228)
-.+|.+|+.++.-+. -+.. + . ++...+..+.... |....++|.++.+||.+||.+...=|.
T Consensus 23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV 102 (156)
T 2q0v_A 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV 102 (156)
T ss_dssp HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCC
Confidence 479999999986441 1222 2 2 4888888887432 789999999999999999998754431
Q ss_pred ----ce-----e--cccCccCcHHHHHHHHHHHH
Q 027117 77 ----IF-----N--LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----~f-----~--~~w~~~ssL~~v~~qF~~~L 99 (228)
.+ . -.|+|..+|..|+...+..|
T Consensus 103 ~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll 136 (156)
T 2q0v_A 103 DNCGRVIKNNLHILKNWNRNYTIETILISLRQEM 136 (156)
T ss_dssp CTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHT
T ss_pred ccCCeEehhhcccccCCCCcCcHHHHHHHHHHHH
Confidence 11 1 16999999988877766655
No 34
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=94.90 E-value=0.2 Score=40.28 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcccee----ee-e-c----CCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 16 SRSVYSEIEEVGWEHL----VR-L-S----EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~l----~~-i-d----~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
.++|.+|+.++.-+.. +. . + .++...+..+.... |....++|.++.+||.+||.|...=+.
T Consensus 6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (157)
T 2gjd_A 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN 85 (157)
T ss_dssp HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCC
Confidence 4789999999864422 11 1 1 35666777776422 678899999999999999998754331
Q ss_pred ----------ceec--ccCccCcHHHHHHHHHHHH
Q 027117 77 ----------IFNL--KWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----------~f~~--~w~~~ssL~~v~~qF~~~L 99 (228)
.+.- .|+|..+|..|+...+..|
T Consensus 86 v~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 120 (157)
T 2gjd_A 86 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120 (157)
T ss_dssp BCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHH
Confidence 1111 5999999988877766655
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=94.88 E-value=0.13 Score=41.25 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=58.7
Q ss_pred HHHHHHHHHhccce-----eee-ecCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027117 17 RSVYSEIEEVGWEH-----LVR-LSEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (228)
Q Consensus 17 s~li~Eie~iGW~~-----l~~-id~~ls~i~l~~~D~----~gR~H~l~v~l~~~yp~~~P~~~~dlP~---------- 76 (228)
.+|.+|+.++.-+. ++. -+.++...++.+.-. .|....++|.+|.+||.+||.|...=|.
T Consensus 5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~ 84 (154)
T 1c4z_D 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ 84 (154)
T ss_dssp TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCE
Confidence 47889999885332 233 345788888887611 2678889999999999999998765442
Q ss_pred ----cee-cccCccCcHHHHHHHHHHHH
Q 027117 77 ----IFN-LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----~f~-~~w~~~ssL~~v~~qF~~~L 99 (228)
.+. -.|++..++..|+...+..|
T Consensus 85 iCl~iL~~~~W~p~~~i~~vl~~i~~ll 112 (154)
T 1c4z_D 85 VCLPVISAENWKPATKTDQVIQSLIALV 112 (154)
T ss_dssp BCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 011 26999889988877766555
No 36
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=94.80 E-value=0.41 Score=37.64 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccce-e----eee-c-C--CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC------
Q 027117 17 RSVYSEIEEVGWEH-L----VRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (228)
Q Consensus 17 s~li~Eie~iGW~~-l----~~i-d-~--~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~------ 76 (228)
.+|.+|+.++.-+. . +.. + . ++...+..+.... |....++|.++.+||.+||.+...=|.
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 88 (138)
T 1jat_B 9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN 88 (138)
T ss_dssp HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEe
Confidence 69999999986441 1 222 2 2 3778888877332 788999999999999999988654331
Q ss_pred ----c----ee--cccCccCcHHHHHHHHHHHH
Q 027117 77 ----I----FN--LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----~----f~--~~w~~~ssL~~v~~qF~~~L 99 (228)
. +. -.|++..+|..|+...+..|
T Consensus 89 ~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll 121 (138)
T 1jat_B 89 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121 (138)
T ss_dssp TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEeeecccCCCCCCcCcHHHHHHHHHHHH
Confidence 1 11 16999889988887776666
No 37
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=94.70 E-value=0.36 Score=39.83 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC------
Q 027117 14 SFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------ 76 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~~l----~~-i-d~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~------ 76 (228)
.--++|.+|+.++.-+.. +. . +.++...++.+... .|....++|.+|.+||.+||.|...=|.
T Consensus 7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 86 (183)
T 3rz3_A 7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86 (183)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence 346899999999854321 22 2 35788899988733 2688999999999999999998755442
Q ss_pred --------cee-------------cccCccCcHHHHHHHHHHHH
Q 027117 77 --------IFN-------------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 --------~f~-------------~~w~~~ssL~~v~~qF~~~L 99 (228)
.+. -.|+|..++..|+...+..|
T Consensus 87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 130 (183)
T 3rz3_A 87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130 (183)
T ss_dssp TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHH
T ss_pred CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHH
Confidence 111 35999888988887777666
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=94.60 E-value=0.3 Score=40.70 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=63.9
Q ss_pred cCCChhhHHHHHHHHHHhccc---eee----eecCCcc---eEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeecC
Q 027117 9 SANSSSFSRSVYSEIEEVGWE---HLV----RLSEDLK---FLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISADV 74 (228)
Q Consensus 9 ~~~~~~~ys~li~Eie~iGW~---~l~----~id~~ls---~i~l~~~D~~----gR~H~l~v~l~~~yp~~~P~~~~dl 74 (228)
....+.--.+|.+|+.++.=. .+. -.+.|+. ...+.+.... |....++|.+|.+||.+||.+...-
T Consensus 24 ~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 103 (190)
T 3o2u_A 24 QPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK 103 (190)
T ss_dssp SCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred CCCccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence 344456688999999998511 111 1245677 7777776432 6888999999999999999987654
Q ss_pred CC--------------ceecccCccCcHHHHHHHHHHHH
Q 027117 75 PY--------------IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 75 P~--------------~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
|. .+.-.|+|..++..|+...+..|
T Consensus 104 ~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 142 (190)
T 3o2u_A 104 KIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF 142 (190)
T ss_dssp CCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHH
Confidence 42 01126999999988877766555
No 39
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=94.50 E-value=0.32 Score=39.31 Aligned_cols=87 Identities=13% Similarity=0.295 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHhccce--eee--ecCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC--------
Q 027117 13 SSFSRSVYSEIEEVGWEH--LVR--LSEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY-------- 76 (228)
Q Consensus 13 ~~~ys~li~Eie~iGW~~--l~~--id~~ls~i~l~~~D~----~gR~H~l~v~l~~~yp~~~P~~~~dlP~-------- 76 (228)
+.--.+|.+|+.++.=.. -+. .+.++....+.+--. .|....++|.+|.+||.+||.+...=|.
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 84 (160)
T 1y8x_A 5 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLE 84 (160)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCC
Confidence 345689999999983111 112 246688887776221 1677899999999999999998765542
Q ss_pred -c--e---ecccCccCcHHHHHHHHHHHH
Q 027117 77 -I--F---NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -~--f---~~~w~~~ssL~~v~~qF~~~L 99 (228)
. + .-.|++..+|..|+...+..|
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 113 (160)
T 1y8x_A 85 GNVCLNILREDWKPVLTINSIIYGLQYLF 113 (160)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEEcccchhhccCCCCHHHHHHHHHHHH
Confidence 0 1 126999889988887776655
No 40
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=94.44 E-value=0.37 Score=40.08 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 11 NSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 11 ~~~~~ys~li~Eie~iGW~-----~l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
.+..--.+|.+|+.++.=+ .+.-.+.++...+..+.... |....++|.+|.+||.+||.|...=|.
T Consensus 11 ~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~ 90 (187)
T 2f4w_A 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFK 90 (187)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBC
T ss_pred CccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceec
Confidence 3445678999999998633 22223567888888887332 778899999999999999998754441
Q ss_pred --------ce---ecccCccCcHHHHHHHHHHHH
Q 027117 77 --------IF---NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 --------~f---~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+ .-.|+|..+|..|+...+..|
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll 124 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM 124 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHHHHH
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHh
Confidence 11 126999889988866655554
No 41
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=94.42 E-value=0.31 Score=44.22 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=65.6
Q ss_pred cCCChhhHHHHHHHHHHhccce---------eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecC
Q 027117 9 SANSSSFSRSVYSEIEEVGWEH---------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADV 74 (228)
Q Consensus 9 ~~~~~~~ys~li~Eie~iGW~~---------l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dl 74 (228)
...++.-..+|.+|+..+.=+. +.-.+.++...++.+.... |....++|.+|.+||.+||.|...=
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 3456678899999999985331 1123567888888887533 6889999999999999999998654
Q ss_pred CC----cee----------------------cccCccC-cHHHHHHHHHHHH
Q 027117 75 PY----IFN----------------------LKWSRKS-RLKDLLQQFREHL 99 (228)
Q Consensus 75 P~----~f~----------------------~~w~~~s-sL~~v~~qF~~~L 99 (228)
|. .|. -.|+|.. +|..|+...+..|
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL 202 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI 202 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHT
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHH
Confidence 41 111 1598875 7888877766665
No 42
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=94.42 E-value=0.31 Score=42.61 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 14 SFSRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~--------~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
.--++|.+|+.+|.-+ .+.-.+.++...+..+... .|....++|.+|.+||.+||.|...=|.
T Consensus 57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 136 (253)
T 3e46_A 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 136 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence 3478999999998432 2334467899999998833 2788999999999999999998754431
Q ss_pred c------e-----ecccCccCcHHHHHHHHHHHH
Q 027117 77 I------F-----NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ~------f-----~~~w~~~ssL~~v~~qF~~~L 99 (228)
. + .-.|+|..+|..|+...+..|
T Consensus 137 V~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 170 (253)
T 3e46_A 137 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 170 (253)
T ss_dssp BCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCCeeecccccCCCCCCCCHHHHHHHHHHHh
Confidence 0 1 127999999988877666555
No 43
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=94.30 E-value=0.5 Score=38.48 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccce-----eeee-cC-C--cceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-----
Q 027117 16 SRSVYSEIEEVGWEH-----LVRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~i-d~-~--ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----- 76 (228)
-.+|++|+.++.-+. .+.. +. + +...+..+.... |....++|.++.+||.+||.+...=|.
T Consensus 27 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV 106 (160)
T 2a4d_A 27 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGV 106 (160)
T ss_dssp HHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCE
Confidence 479999999986431 1222 33 3 788888887432 688999999999999999988754331
Q ss_pred -----c-----ee--cccCccCcHHHHHHHHHHHH
Q 027117 77 -----I-----FN--LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 -----~-----f~--~~w~~~ssL~~v~~qF~~~L 99 (228)
. +. -.|++..++..|+...+..|
T Consensus 107 ~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll 141 (160)
T 2a4d_A 107 NSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM 141 (160)
T ss_dssp CTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred ECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHH
Confidence 0 11 26999889988877766655
No 44
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=94.27 E-value=0.34 Score=40.64 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcccee------------------eeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCce
Q 027117 14 SFSRSVYSEIEEVGWEHL------------------VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSI 70 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~~l------------------~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~ 70 (228)
.-.++|.+|+.++.-+.. .-.+.++...+..+.... |....++|.+|.+||.+||.|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 346899999998854322 224566888888887432 688999999999999999998
Q ss_pred eecCCC----c------e-----ecccCccCcHHHHHHHHHHHH
Q 027117 71 SADVPY----I------F-----NLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 71 ~~dlP~----~------f-----~~~w~~~ssL~~v~~qF~~~L 99 (228)
...=|. . + .-.|+|..+|..|+...+..|
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 155 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHH
Confidence 754431 1 0 115999999988877766655
No 45
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=94.23 E-value=0.32 Score=39.38 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=62.9
Q ss_pred cCCChhhHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC----CCCEEEEEEEecCCCCCCCCceeecCCC--
Q 027117 9 SANSSSFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY-- 76 (228)
Q Consensus 9 ~~~~~~~ys~li~Eie~iGW~~l----~~-i-d~~ls~i~l~~~D~----~gR~H~l~v~l~~~yp~~~P~~~~dlP~-- 76 (228)
....+.--++|.+|+.++.-+.. +. . +.++....+.+-.. .|....++|.++.+||.+||.|...-|.
T Consensus 9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 34556667899999999864421 22 2 34577777776322 2678889999999999999998755441
Q ss_pred ------------ceec------ccCccCcHHHHHHHHHHHH
Q 027117 77 ------------IFNL------KWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------------~f~~------~w~~~ssL~~v~~qF~~~L 99 (228)
.+.- .|++..++..|+...+..|
T Consensus 89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll 129 (167)
T 3fn1_B 89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129 (167)
T ss_dssp SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 0111 5999989988877666554
No 46
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=94.00 E-value=0.28 Score=39.38 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccc--eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----c------ee
Q 027117 17 RSVYSEIEEVGWE--HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I------FN 79 (228)
Q Consensus 17 s~li~Eie~iGW~--~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~----~------f~ 79 (228)
++|.+|+.++.-+ .+.-.+.++...++.+... .|....++|.+|.+||.+||.+...=|. . +.
T Consensus 5 ~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iC 84 (152)
T 2onu_A 5 TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVC 84 (152)
T ss_dssp CHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBC
T ss_pred HHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEe
Confidence 4677777766322 2333467788888888632 2788999999999999999998754331 0 00
Q ss_pred -----cccCccCcHHHHHHHHH
Q 027117 80 -----LKWSRKSRLKDLLQQFR 96 (228)
Q Consensus 80 -----~~w~~~ssL~~v~~qF~ 96 (228)
-.|+|..++..|+..+.
T Consensus 85 l~il~~~W~p~~~i~~vl~~ii 106 (152)
T 2onu_A 85 LDVINQTWTPLYSLVNVFEVFL 106 (152)
T ss_dssp HHHHHHHCCTTCCHHHHHHTHH
T ss_pred cccccccCCCCCCHHHHHHHHH
Confidence 15998888888887653
No 47
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=93.60 E-value=0.55 Score=38.77 Aligned_cols=89 Identities=12% Similarity=0.293 Sum_probs=62.2
Q ss_pred CCChhhHHHHHHHHHHhccc--eeee--ecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 10 ANSSSFSRSVYSEIEEVGWE--HLVR--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 10 ~~~~~~ys~li~Eie~iGW~--~l~~--id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
...+.--.+|.+|+.++.=. .-+. .+.++....+.+ ... |....++|.+|.+||.+||.|...=|.
T Consensus 22 ~~~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 22 KKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CSCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred CCccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 34455678999999998311 1122 246688888776 322 677889999999999999998765442
Q ss_pred ----------ceecccCccCcHHHHHHHHHHHH
Q 027117 77 ----------IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ----------~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|+|..++..|+...+..|
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll 133 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLF 133 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHHHHHHH
Confidence 01126999889988887776655
No 48
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=93.41 E-value=0.26 Score=40.87 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHhccc-eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCC----Ccee----
Q 027117 14 SFSRSVYSEIEEVGWE-HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVP----YIFN---- 79 (228)
Q Consensus 14 ~~ys~li~Eie~iGW~-~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP----~~f~---- 79 (228)
.--.+|.+|+.++.=+ .-+....++....+.+... .|....++|.+|.+||.+||.+...=| -...
T Consensus 25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 3467999999988411 1122234677778777642 278899999999999999999875443 1111
Q ss_pred -------cccCccCcHHHHHHHHHHHH
Q 027117 80 -------LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 80 -------~~w~~~ssL~~v~~qF~~~L 99 (228)
-.|+|..++..|+..|...|
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~L 131 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQL 131 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHH
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHH
Confidence 16998888888887744433
No 49
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=93.26 E-value=0.89 Score=37.11 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcc---------------ceeee--ecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeec
Q 027117 16 SRSVYSEIEEVGW---------------EHLVR--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD 73 (228)
Q Consensus 16 ys~li~Eie~iGW---------------~~l~~--id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~d 73 (228)
-.+|.+|+.++.- -..+. -+.++...+..+.... |....++|.+|.+||.+||.+...
T Consensus 8 ~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 87 (172)
T 2y9m_A 8 MSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM 87 (172)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEe
Confidence 4688888877643 22222 2456888888887433 788999999999999999998765
Q ss_pred C-----CCc-----------ee-cccCccCcHHHHHHHHHHHH
Q 027117 74 V-----PYI-----------FN-LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 74 l-----P~~-----------f~-~~w~~~ssL~~v~~qF~~~L 99 (228)
= |-. +. -.|+|..+|..|+...+..|
T Consensus 88 t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll 130 (172)
T 2y9m_A 88 QNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130 (172)
T ss_dssp TTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHH
T ss_pred eCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHH
Confidence 5 211 11 26999889988887776655
No 50
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=92.86 E-value=0.27 Score=41.94 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccce-----eeeecC-CcceEEEEEEe---CC--CCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 17 RSVYSEIEEVGWEH-----LVRLSE-DLKFLSFRVID---KK--GRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 17 s~li~Eie~iGW~~-----l~~id~-~ls~i~l~~~D---~~--gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
.+|.+|+.++.-+. +.-.+. ++...+..+.. +- |....++|.+|.+||.+||.|...=|.
T Consensus 5 ~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~ 84 (215)
T 1tte_A 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT 84 (215)
T ss_dssp HHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCC
Confidence 68999999985332 122233 46677766543 21 567789999999999999998754431
Q ss_pred ------ceecccCccCcHHHHHHHHHHHH
Q 027117 77 ------IFNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------~f~~~w~~~ssL~~v~~qF~~~L 99 (228)
.+.-.|+|..+|..|+...+..|
T Consensus 85 G~ICL~iL~~~WsP~~ti~~VL~sI~sLL 113 (215)
T 1tte_A 85 GAICLDILRNAWSPVITLKSALISLQALL 113 (215)
T ss_dssp SCCCSSTTTCCSCTTCCHHHHHHHHHHHH
T ss_pred CEEECccCCCCCCCcCcHHHHHHHHHHHH
Confidence 00116999989988877766655
No 51
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=92.82 E-value=0.65 Score=38.02 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccce-eeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----c------ee-
Q 027117 17 RSVYSEIEEVGWEH-LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I------FN- 79 (228)
Q Consensus 17 s~li~Eie~iGW~~-l~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~----~------f~- 79 (228)
.+|.+|+..+.-+. -+..+.++....+.+.... |....++|.++.+||.+||.|...=+. . +.
T Consensus 15 ~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl 94 (171)
T 1yf9_A 15 RRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94 (171)
T ss_dssp HHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEec
Confidence 78999999876442 1245778999999887432 788999999999999999998754331 0 00
Q ss_pred ----cccCccCcHHHHHHHH
Q 027117 80 ----LKWSRKSRLKDLLQQF 95 (228)
Q Consensus 80 ----~~w~~~ssL~~v~~qF 95 (228)
-.|++..+|..|+..+
T Consensus 95 ~iL~~~W~p~~~i~~vL~si 114 (171)
T 1yf9_A 95 DVINQTWTPMYQLENIFDVF 114 (171)
T ss_dssp HHHHHHCCTTCCTHHHHHTH
T ss_pred cccccCCCCCCcHHHHHHHH
Confidence 1698888888887765
No 52
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=92.47 E-value=0.96 Score=37.06 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhccce-----eeee-cCC---cceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----
Q 027117 15 FSRSVYSEIEEVGWEH-----LVRL-SED---LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---- 76 (228)
Q Consensus 15 ~ys~li~Eie~iGW~~-----l~~i-d~~---ls~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~dlP~---- 76 (228)
--.+|++|+.++.-+. .+.. +.+ +...+..+.... |....++|.++.+||.+||.+...=|.
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 3589999999985431 1222 432 788888887432 678899999999999999988654331
Q ss_pred ------c-----ee--cccCccCcHHHHHHHHHHHH
Q 027117 77 ------I-----FN--LKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ------~-----f~--~~w~~~ssL~~v~~qF~~~L 99 (228)
. +. -.|++..+|..|+...+..|
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll 151 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM 151 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHH
Confidence 0 11 26999889988887766665
No 53
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=92.42 E-value=0.82 Score=42.10 Aligned_cols=84 Identities=15% Similarity=0.358 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccce-----eeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027117 16 SRSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (228)
Q Consensus 16 ys~li~Eie~iGW~~-----l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~dlP~--------- 76 (228)
-++|.+|+.++.-+. +.-.+.++...+..+... .|....++|.+|.+||.+||.|...=|.
T Consensus 5 ~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 84 (399)
T 4ddg_A 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 84 (399)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCC
Confidence 468999999985432 223456788888888743 2688899999999999999998755442
Q ss_pred c-----eecccCccCcHHHHHHHHHHHH
Q 027117 77 I-----FNLKWSRKSRLKDLLQQFREHL 99 (228)
Q Consensus 77 ~-----f~~~w~~~ssL~~v~~qF~~~L 99 (228)
. +.-.|+|..++..|+...+..|
T Consensus 85 ~iCl~il~~~W~p~~~i~~vL~~i~~ll 112 (399)
T 4ddg_A 85 SISLDILRSQWSPALTISKVLLSICSLL 112 (399)
T ss_dssp BBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred eEeCcccccCCCccccHHHHHHHHHHHH
Confidence 0 1127999989988876666555
No 54
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.87 E-value=2.9 Score=31.65 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhc---cceeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceee
Q 027117 14 SFSRSVYSEIEEVG---WEHLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISA 72 (228)
Q Consensus 14 ~~ys~li~Eie~iG---W~~l~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~ 72 (228)
.+-.....||++|. =+.+..++..-..+++++... ..-.-.|.|.+|.+||.++|.+..
T Consensus 10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l 76 (128)
T 2ebm_A 10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEI 76 (128)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEE
Confidence 45677788887774 245555554445667766532 123456899999999999998764
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=86.47 E-value=2.4 Score=34.17 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCCEEE--EEEEecCCCCCCCCceeecC-------CCce-------e----cccCc-cCcHHHHHHHHHHHHH
Q 027117 49 KGRVHC--MEIQLDKNYPRSPPSISADV-------PYIF-------N----LKWSR-KSRLKDLLQQFREHLE 100 (228)
Q Consensus 49 ~gR~H~--l~v~l~~~yp~~~P~~~~dl-------P~~f-------~----~~w~~-~ssL~~v~~qF~~~Le 100 (228)
+|..+. |.|-++.+||.++|.|.+.- +.+. . -+|++ .++|.++++..+.++.
T Consensus 65 ~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 65 RGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp SSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHH
T ss_pred cCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHh
Confidence 355555 69999999999999998754 2111 0 18986 7889888877776654
No 56
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=85.87 E-value=8.7 Score=29.20 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHHHHhc---cceeeeecCC-------cceEEEEEEe--CCC----CEEEEEEEecCCCCCCCCceee
Q 027117 12 SSSFSRSVYSEIEEVG---WEHLVRLSED-------LKFLSFRVID--KKG----RVHCMEIQLDKNYPRSPPSISA 72 (228)
Q Consensus 12 ~~~~ys~li~Eie~iG---W~~l~~id~~-------ls~i~l~~~D--~~g----R~H~l~v~l~~~yp~~~P~~~~ 72 (228)
...+-.....||++|. =+.+..++.. -..+++++.- ..+ -.-.|.|.+|.+||.++|.+..
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l 84 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDL 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEE
Confidence 3466777888887774 2444444432 2456666652 111 2346788889999999888764
No 57
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.98 E-value=6.3 Score=29.85 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhc--c-c--eeeeec---CCcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeec
Q 027117 15 FSRSVYSEIEEVG--W-E--HLVRLS---EDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD 73 (228)
Q Consensus 15 ~ys~li~Eie~iG--W-~--~l~~id---~~ls~i~l~~~D~~----gR~H~l~v~l~~~yp~~~P~~~~d 73 (228)
+......||++|. . + .+..++ .+...+++++.... .-.-.|.|.+|.+||.++|.+...
T Consensus 8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4445677887764 1 2 333333 22346777765332 234568899999999998887754
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=80.42 E-value=9.1 Score=29.27 Aligned_cols=60 Identities=12% Similarity=0.289 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhc--c-ceeeeecC--------CcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCceeec
Q 027117 14 SFSRSVYSEIEEVG--W-EHLVRLSE--------DLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD 73 (228)
Q Consensus 14 ~~ys~li~Eie~iG--W-~~l~~id~--------~ls~i~l~~~D~~----gR~H~l~v~l~~~yp~~~P~~~~d 73 (228)
.|-..-..||++|. . +.+..++. .-..+++++.... .-.-.|.|.+|.+||.++|.+...
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 84 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEE
T ss_pred chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEe
Confidence 34555677887764 2 34444443 2356677766322 234468888999999999988753
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=74.99 E-value=17 Score=27.28 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHhc---cceeeeecC----CcceEEEEEEeC----C---CCEEEEEEEecCCCCCCCCceeec
Q 027117 18 SVYSEIEEVG---WEHLVRLSE----DLKFLSFRVIDK----K---GRVHCMEIQLDKNYPRSPPSISAD 73 (228)
Q Consensus 18 ~li~Eie~iG---W~~l~~id~----~ls~i~l~~~D~----~---gR~H~l~v~l~~~yp~~~P~~~~d 73 (228)
....||++|. =+.+..++. .-..+++++.-. . .-.-.|.|.+|.+||.++|.+...
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~ 81 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIR 81 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEE
Confidence 3456776654 244444442 345677777411 1 124457899999999998887643
No 60
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=73.61 E-value=5.8 Score=31.49 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=20.4
Q ss_pred EEEEEEEecCCCCCCCCceeecCC
Q 027117 52 VHCMEIQLDKNYPRSPPSISADVP 75 (228)
Q Consensus 52 ~H~l~v~l~~~yp~~~P~~~~dlP 75 (228)
.-.|.|.+|.+||.++|.+.+.-+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 578999999999999998886654
No 61
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=69.06 E-value=5.5 Score=32.52 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=34.9
Q ss_pred EEEEEEecCCCCCCCCceeecCC----------Cc--eec------------ccCc-cCcHHHHHHHHHHHH
Q 027117 53 HCMEIQLDKNYPRSPPSISADVP----------YI--FNL------------KWSR-KSRLKDLLQQFREHL 99 (228)
Q Consensus 53 H~l~v~l~~~yp~~~P~~~~dlP----------~~--f~~------------~w~~-~ssL~~v~~qF~~~L 99 (228)
.-|.|.++.+||.+||.|.+..+ .. -.+ +|++ .++|.++++..+..+
T Consensus 83 ~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf 154 (162)
T 3r3q_A 83 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLL 154 (162)
T ss_dssp EEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTT
T ss_pred ccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHh
Confidence 66999999999999999988541 10 011 8998 579998887776654
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=62.94 E-value=13 Score=29.13 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEEEecCCCCCCCCceeecCC
Q 027117 52 VHCMEIQLDKNYPRSPPSISADVP 75 (228)
Q Consensus 52 ~H~l~v~l~~~yp~~~P~~~~dlP 75 (228)
.-.|.|.+|.+||.++|.+.+.-+
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 456788999999999998875544
No 63
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=61.03 E-value=9.9 Score=31.55 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.1
Q ss_pred EEEEEEEecCCCCCCCCceee
Q 027117 52 VHCMEIQLDKNYPRSPPSISA 72 (228)
Q Consensus 52 ~H~l~v~l~~~yp~~~P~~~~ 72 (228)
...|++.+|.+||..||.|..
T Consensus 84 ~F~L~~~fPe~YP~~PPeV~F 104 (172)
T 2z6o_A 84 EFDIEFDIPITYPTTAPEIAV 104 (172)
T ss_dssp EEEEEEECCTTTTTSCCCCBC
T ss_pred EEEEEEECCCCCCCCCCeeee
Confidence 778999999999999999874
No 64
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural genomics, MCSG, structure initiative; 1.20A {Clostridium difficile}
Probab=42.27 E-value=19 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHHHH-HHHhccceeeeecCCcceEEEEEEeCC
Q 027117 16 SRSVYSE-IEEVGWEHLVRLSEDLKFLSFRVIDKK 49 (228)
Q Consensus 16 ys~li~E-ie~iGW~~l~~id~~ls~i~l~~~D~~ 49 (228)
|..+.++ |+.||.+++.+++...+.|+|++.|.+
T Consensus 6 y~~~A~~Ii~~lG~eNI~~v~~C~TRLR~~lkD~~ 40 (95)
T 3ipj_A 6 YNKIANELIKIIGEDNIISITHCATRLRVMVKDRE 40 (95)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSEEEEEESCGG
T ss_pred HHHHHHHHHHHHCHHHhhhhhhccceeEEEEeCcc
Confidence 5555444 455699999999999999999999984
No 65
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=28.47 E-value=74 Score=22.47 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=25.6
Q ss_pred eeeeecCC-----cceEEEEEEeCCCCEEEEEEEecC
Q 027117 30 HLVRLSED-----LKFLSFRVIDKKGRVHCMEIQLDK 61 (228)
Q Consensus 30 ~l~~id~~-----ls~i~l~~~D~~gR~H~l~v~l~~ 61 (228)
|+++++.. +-..+++-+|++|+.|.|+-....
T Consensus 27 kVis~t~~~~~C~Vvpa~MtY~DS~G~~~~l~Y~~~g 63 (69)
T 4f98_A 27 NVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWG 63 (69)
T ss_dssp EEEEECCCTTCCSEEEEEEEEECTTSCEEEEEEEEEC
T ss_pred eEEEecCCCCccceEccEEEEEcCCCCEEEEEEEeec
Confidence 88888855 446788999999999999876643
No 66
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=26.46 E-value=30 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHhc-cceeeeecCCcceEEEEEEeCC
Q 027117 23 IEEVG-WEHLVRLSEDLKFLSFRVIDKK 49 (228)
Q Consensus 23 ie~iG-W~~l~~id~~ls~i~l~~~D~~ 49 (228)
|+.+| .+++.+++...+.++|++.|.+
T Consensus 11 i~~lGG~~NI~~v~~C~TRLR~~lkD~~ 38 (82)
T 3bp3_A 11 VAAFGGKENITNLDACITRLRVSVADVS 38 (82)
T ss_dssp HHHTTCGGGEEEEEECSSEEEEEESCGG
T ss_pred HHHhCCHHHHhhhccccceEEEEEeCcc
Confidence 67787 9999999999999999999985
No 67
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=24.53 E-value=46 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.3
Q ss_pred EEEEEEEecCCCCCCCCceee
Q 027117 52 VHCMEIQLDKNYPRSPPSISA 72 (228)
Q Consensus 52 ~H~l~v~l~~~yp~~~P~~~~ 72 (228)
+-.|++.+|.+||..||.+..
T Consensus 86 eFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 86 EFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp EEEEEEECCTTTTTSCCCCBC
T ss_pred EEEEEEeCCccCCCCCCEeec
Confidence 556899999999999999873
Done!